OSCR

Innate Immunocompetent hiPSC-Derived Neurospheroids Capture Early CNS Responses to rAAV.

Overview

Authors: Catarina M. Gomes1,2, Gabriela Silva1,2, Mafalda Aleixo1,2, Marta Gomes1,2, Daniel Simão1,2, Stephan J. Holtkamp3, Diana D. Lobo4, Pradeep Harish5, Rosalind Jenkins5, Lekh N. Dahal5, Rui J. Nobre4,6,7,8, Luís de Pereira de Almeida4,6,9,10, Mark Trautwein3, Paula M. Alves1,2, Catarina Brito1,2,4
  1. iBET Instituto De Biologia Experimental e Biológica Oeiras Portugal
  2. Instituto De Tecnologia Química e Biológica António Xavier Universidade Nova de Lisboa Oeiras Portugal
  3. Drug Discovery Sciences Bayer AG Wuppertal Germany
  4. CNC ‐ Center for Neuroscience and Cell Biology of Coimbra, Molecular Therapy of Brain Disorders Group University of Coimbra Coimbra Portugal
  5. Department of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology University of Liverpool Liverpool UK
  6. Institute For Interdisciplinary Research (III) University of Coimbra Coimbra Portugal
  7. GeneT, Gene Therapy Center of Excellence University of Coimbra Coimbra Portugal
  8. ViraVector–Viral Vectors for Gene Transfer Core Facility University of Coimbra Coimbra Portugal
  9. Center For Innovative Biomedicine and Biotechnology (CIBB) University of Coimbra Coimbra Portugal
  10. Faculty of Pharmacy University of Coimbra Coimbra Portugal
Dates: received 15 October 2025; accepted 24 August 2026; published online 6 September 2026; in print September 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1002/advs.202520408 · PMID 42702874 · PMCID PMC13547711 · OpenAlex W7211880319
Open access: gold, a free copy (OpenAlex)
Status: data only
Categories: human (organism)
Methods: Statistics, Smoothing, state filtering, decompositions, fMRI & imaging
Keywords: central nervous system, gene therapy, glial cells, innate immunity, rAAV
Topic: Virus-based gene therapy research (Genetics, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: Fundação para a Ciência e Tecnologia/Ministério da Educação, Ciência e Inovação (LA/P/0087/2020, UID/04462/2025, UID/PRR/04462/2025, UID/PRR2/04462/2025, UI/BD/151253/2021); Associate Laboratory LS4FUTURE (LA/P/0087/2020); Fundação para a Ciência e a Tecnologia (UI/BD/151253/2021); Innovative Medicine Initiative 2 Joint Undertaking (945473)
Citations: not cited yet (Europe PMC); 135 references in the paper

Abstract

Gene therapies using adeno‐associated viruses (AAVs) for central nervous system (CNS) disorders face challenges because host immune responses are not represented in classical preclinical models. Here, we present a human‐induced pluripotent stem cell (hiPSC)‐derived innate immunocompetent 3D CNS model that recapitulates neuroinflammatory hallmarks, serving as a platform for preclinical gene therapy development. By utilizing various scales of stirred‐tank bioreactor systems, we generated neurospheroids (iNSpheroids) composed of neurons, astrocytes, and oligodendrocytes, alongside microglial cells (iMGLs) to mimic the neuroimmune axis. These systems enabled large‐scale production of iNSpheroids and subsequent miniaturization for co‐culture experiments and screening of inflammatory stimuli, while maintaining a highly controlled environment. The iMGL‐iNSpheroids demonstrated active neuron‐microglia crosstalk and exhibited distinct inflammatory responses to a series of neuroinflammatory factors. iMGL‐iNSpheroids mounted an early response to rAAV9, which is underscored by the activation of inflammatory pathways (e.g., TNF‐via NF‐κB activation) in glial cell populations. This model offers a valuable tool to dissect neuroinflammatory mechanisms, accelerating gene therapy development.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

The paper links to its data, not to its authors' code: see the Data section.

Tracing map

A tracing map links a paper to the code its authors published: this paper has none, so it has no map.

Data

Data links

Data Availability Statement

This study did not generate new unique materials. Single‐nucleus and bulk RNA‐seq data have been deposited at GEO: Bulk RNAseq data accession number GSE299019. snRNA‐Seq data accession number: GSE298806. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE [128] partner repository with the dataset identifier PXD065639.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, pages, dates, 15 authors, 5 keywords, 4 funders, 132 references.

Cite

This paper

Gomes, C. M., Silva, G., Aleixo, M., Gomes, M., Simão, D., Holtkamp, S. J., Lobo, D. D., Harish, P., Jenkins, R., Dahal, L. N., Nobre, R. J., de Pereira de Almeida, L., Trautwein, M., Alves, P. M., & Brito, C. (2026). Innate Immunocompetent hiPSC-Derived Neurospheroids Capture Early CNS Responses to rAAV. Advanced science (Weinheim, Baden-Wurttemberg, Germany), e20408. https://doi.org/10.1002/advs.202520408

BibTeX

@article{gomes2026innate,
author = {Gomes, Catarina M. and Silva, Gabriela and Aleixo, Mafalda and Gomes, Marta and Simão, Daniel and Holtkamp, Stephan J. and Lobo, Diana D. and Harish, Pradeep and Jenkins, Rosalind and Dahal, Lekh N. and Nobre, Rui J. and de Pereira de Almeida, Luís and Trautwein, Mark and Alves, Paula M. and Brito, Catarina},
title = {{Innate Immunocompetent hiPSC-Derived Neurospheroids Capture Early CNS Responses to rAAV}},
journal = {Advanced science (Weinheim, Baden-Wurttemberg, Germany)},
year = {2026},
month = sep,
pages = {e20408},
publisher = {Wiley},
issn = {2198-3844},
doi = {10.1002/advs.202520408},
url = {https://doi.org/10.1002/advs.202520408},
pmid = {42702874},
pmcid = {PMC13547711}
}

RIS

TY - JOUR
AU - Gomes, Catarina M.
AU - Silva, Gabriela
AU - Aleixo, Mafalda
AU - Gomes, Marta
AU - Simão, Daniel
AU - Holtkamp, Stephan J.
AU - Lobo, Diana D.
AU - Harish, Pradeep
AU - Jenkins, Rosalind
AU - Dahal, Lekh N.
AU - Nobre, Rui J.
AU - de Pereira de Almeida, Luís
AU - Trautwein, Mark
AU - Alves, Paula M.
AU - Brito, Catarina
TI - Innate Immunocompetent hiPSC-Derived Neurospheroids Capture Early CNS Responses to rAAV
T2 - Advanced science (Weinheim, Baden-Wurttemberg, Germany)
J2 - Adv Sci (Weinh)
PY - 2026
DA - 2026/09/06
SP - e20408
SN - 2198-3844
PB - Wiley
DO - 10.1002/advs.202520408
UR - https://doi.org/10.1002/advs.202520408
LA - en
ER -

CSL-JSON

{
"id": "10.1002/advs.202520408",
"type": "article-journal",
"title": "Innate Immunocompetent hiPSC-Derived Neurospheroids Capture Early CNS Responses to rAAV",
"container-title": "Advanced science (Weinheim, Baden-Wurttemberg, Germany)",
"author": [
{
"family": "Gomes",
"given": "Catarina M."
},
{
"family": "Silva",
"given": "Gabriela"
},
{
"family": "Aleixo",
"given": "Mafalda"
},
{
"family": "Gomes",
"given": "Marta"
},
{
"family": "Simão",
"given": "Daniel"
},
{
"family": "Holtkamp",
"given": "Stephan J."
},
{
"family": "Lobo",
"given": "Diana D."
},
{
"family": "Harish",
"given": "Pradeep"
},
{
"family": "Jenkins",
"given": "Rosalind"
},
{
"family": "Dahal",
"given": "Lekh N."
},
{
"family": "Nobre",
"given": "Rui J."
},
{
"family": "de Pereira de Almeida",
"given": "Luís"
},
{
"family": "Trautwein",
"given": "Mark"
},
{
"family": "Alves",
"given": "Paula M."
},
{
"family": "Brito",
"given": "Catarina"
}
],
"container-title-short": "Adv Sci (Weinh)",
"page": "e20408",
"DOI": "10.1002/advs.202520408",
"PMID": "42702874",
"PMCID": "PMC13547711",
"ISSN": "2198-3844",
"publisher": "Wiley",
"URL": "https://doi.org/10.1002/advs.202520408",
"language": "en",
"issued": {
"date-parts": [
[
2026,
9,
6
]
]
}
}

Similar papers

The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.

[1] doi:10.1038/s41593-026-02367-0 [code]
A reproducible three-dimensional model of human brain tissue to investigate physiological and disease-associated microglia phenotypes.
Journal: Nature neuroscience
In common: 11 references
[2] doi:10.1016/j.neuron.2026.07.007 [code]
Human-specific SRGAP2 paralogs synchronize neotenic microglial maturation and synaptic development.
Journal: Neuron
In common: 6 references
[3] doi:10.1016/j.stemcr.2026.103053 [code]
Development and validation of a long-term co-maturation protocol for human stem cell-derived microglia and neuronal networks.
Journal: Stem cell reports
In common: 6 references
[4] doi:10.1016/j.isci.2026.116412 [code]
KOLF2.1J iTF-Microglia: A standardized platform to study microglial transcriptional regulatory networks in CNS disease.
Journal: iScience
In common: 6 references
[5] doi:10.1038/s42003-026-09948-6 [code]
A scalable human-zebrafish xenotransplantation model reveals gastrosome-mediated processing of dying neurons by human microglia.
Journal: Communications biology
In common: 5 references
[6] doi:10.1016/j.crmeth.2026.101425
Human cerebral organoids with microglia and vasculature model glioma stem cell interactions and radiotherapy response.
Journal: Cell reports methods
In common: 4 references
[7] doi:10.1038/s41386-026-02406-1 [code]
Functional genomic profiling of schizophrenia-associated genes reveals key microglial regulators.
Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology
In common: 4 references
[8] doi:10.1038/s41467-026-73545-8
Long-term comparative analysis of AAV9-mediated gene replacement therapies for spinal muscular atrophy in mice.
Journal: Nature communications
In common: 3 references
[9] doi:10.1038/s41467-026-74906-z
Youth-associated protein TIMP2 regulates microglial state and function in healthy and aged mice.
Journal: Nature communications
In common: 3 references
[10] doi:10.3389/fnins.2026.1799542
Disease-associated RNA and protein signatures in iPSC-derived microglia model of Alzheimer's disease.
Journal: Frontiers in neuroscience
In common: 3 references

Contribute

The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Request its removal

To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).

Discussion, reproductions, activity

Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.

Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.

Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.