Open Scientific Code Registry

OSCR finds the code that the authors of open-access neuroscience papers published with their work. It reads each paper's own text for links to that code, checks at the source that every link answers, records the exact commit and its licence, and puts the code beside the paper in the Code ↔ Paper reader, which shows the lines of code that match each paragraph. It is free, it asks nobody for an email address, and the source always prevails.

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22,128

open-access neuroscience papers read

2,882

with their authors' code; 18% of the research articles have it

4,386

code repositories, 4,208 answering at the last check

211,077

scripts read at the source

2,065

papers with Code ↔ Paper matches (15,692 matches)

The latest papers with their authors' code

The 96 papers of the catalogue's 19 latest days of publication, from 5 September 2026 to 28 September 2026. Every older paper is in the list by date.

Monday, 28 September 2026 (1 paper)

[1] Code ↔ Paper doi:10.7554/elife.110011 [paper, repository]

Tau hyperphosphorylation impairs cooperative binding to microtubules and perturbs organelle trafficking in neurons.

Journal: eLife

Authors' code: danielbeaudet-McGill/scripts_data_Beaudet_Berger_Hendricks_eLife_2026 (MIT)

Status: code verified, 1 file readable

Sunday, 27 September 2026 (2 papers)

[2] Code ↔ Paper doi:10.1002/advs.77857 [paper, repository]

Brain Network Dynamics of Local and Global Predictive Processing in Aging.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: leonardob92/LBPD-1.0 (GPL-3.0), leonardob92/broadness_meg_auditoryrecognition (no license), MathiasHoueAndersen/Predictive-Processing-In-Aging (no license), leonardob92/BROADNESS_Aging_MMN_AdvancedScience (no license), mathiashoueandersen/hierarchical-predictive-processing (no license)

Status: code verified, 245 files readable, 30 matches

[3] Code ↔ Paper doi:10.1002/advs.77986 [paper, repository]

DUET-seq: An Open-Source Droplet Platform for High-Fidelity Joint Chromatin and Transcriptome Profiling Reveals Temporal Regulatory Decoupling in Single Cells.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: biochengd/DUET-seq (no license)

Status: code verified, 28 files readable, 34 matches

Saturday, 26 September 2026 (3 papers)

[4] Code ↔ Paper doi:10.1007/s00429-026-03166-w [paper, repository]

Autoencoders for unsupervised analysis of rat myeloarchitecture.

Journal: Brain structure & function

Authors' code: UEF-Multiscale-Imaging/AE-and-GMM-myelin-stained-tissue (MIT)

Status: code verified, 53 files readable, 6 matches

[5] Code ↔ Paper doi:10.1038/s41398-026-04492-7 [paper, repository]

Resolving temporal threat uncertainty by observational learning involves the amygdala, hippocampus and anterior insula.

Journal: Translational psychiatry

Authors' code: OSF 653pr (no license), OSF 5ny9u (no license)

Status: code verified, 11 files readable

[6] Code ↔ Paper doi: [paper, repository]

Beyond bacteria: a multi-omics view of the gut–brain axis in Parkinson’s disease

Journal: Frontiers in cellular and infection microbiology

Authors' code: hanhuiyeye/PD (no license), euniceokk/prisma (no license)

Status: code verified, 4 files readable, 4 matches

Friday, 25 September 2026 (9 papers)

[7] Code ↔ Paper doi:10.1126/sciadv.adz9632 [paper, repository]

Population coding under the scale invariance of high-dimensional noise.

Journal: Science advances

Authors' code: Zenodo 19504768 (CC-BY-4.0), Sai-Sumedh/scaling-population-coding (no license)

Status: code verified, 77 files readable, 6 matches

[8] Code ↔ Paper doi:10.1126/sciadv.aef2202 [paper, repository]

MCA1 mechanosensitive channels enable fast communication of wound signals between lateral roots.

Journal: Science advances

Authors' code: Zenodo 20036842 (CC-BY-4.0), angelbaudon/angelbaudon-lateral-root-communication-2026 (no license)

Status: code verified, 22 files readable

[9] Code ↔ Paper doi:10.1371/journal.pone.0357956 [paper, repository]

Early electrophysiological responses reflect precision-weighted prediction errors to face features.

Journal: PloS one

Authors' code: OSF xhmcu (no license)

Status: code verified, 1 file readable

[10] Code ↔ Paper doi:10.1371/journal.pone.0358552 [paper, repository]

High-frequency stimulation-induced secondary hyperalgesia shifts temporal order judgment and increases precuneus nodal degree in healthy adults.

Journal: PloS one

Authors' code: MariusKlug/zapline-plus (GPL-3.0), crisglav/discover-eeg (CC-BY-4.0)

Status: code verified, 77 files readable, 4 matches

[11] Code ↔ Paper doi:10.1371/journal.pone.0359316 [paper, repository]

A neuroevolution-driven agent-based model of coral larvae settlement.

Journal: PloS one

Authors' code: sarahkcw/coral-larvae-abm (MIT)

Status: code verified, 229 files readable, 31 matches

[12] Code ↔ Paper doi:10.7554/elife.110588 [paper, repository]

Opening the black box toward a modular approach to spike sorting.

Journal: eLife

Authors' code: Zenodo 20407862 (CC-BY-4.0), SpikeInterface/sorting_components_benchmark_paper (MIT), SpikeInterface/spikeinterface (MIT)

Status: code verified, 672 files readable, 23 matches

[13] Code ↔ Paper doi:10.7554/elife.110770 [paper, repository]

Retinal curl as a functional signal for heading estimation beyond the focus of expansion.

Journal: eLife

Authors' code: OSF b37rg (no license), supp:PMC13614786/elife-110770-code1.zip (no license)

Status: code verified, 16 files readable, 7 matches

[14] Code ↔ Paper doi: [paper, repository]

Going deeper with morphologically detailed neural networks by simulation-based gradient propagation

Journal: Frontiers in computational neuroscience

Authors' code: MS-GEB/DeepDendrite-modularization (Apache-2.0)

Status: code verified, 1,731 files readable

[15] Code ↔ Paper doi: [paper, repository]

Real-time closed-loop feedback system for mouse mesoscale cortical signal and movement control

Journal: eLife

Authors' code: pankajkgupta/clopy (GPL-3.0)

Status: code verified, 15 files readable, 11 matches

Monday, 21 September 2026 (1 paper)

[16] Code ↔ Paper doi:10.7554/elife.106554 [paper, repository]

Enhanced tactile coding in rat neocortex under darkness.

Journal: eLife

Authors' code: UT-yakusaku/Yamashiro-eLife-2024 (MIT)

Status: code verified, 9 files readable, 2 matches

Saturday, 19 September 2026 (1 paper)

[17] Code ↔ Paper doi:10.1096/fba.2026-00194 [paper, repository]

Glial and Vascular Plasma Biomarkers Across the Alzheimer's Disease Continuum: An ADNI-Based Longitudinal Study.

Journal: FASEB bioAdvances

Authors' code: Khodakaram/adni-glial-vascular-axis (MIT)

Status: code verified, 17 files readable, 17 matches

Friday, 18 September 2026 (7 papers)

[18] Code ↔ Paper doi:10.1007/s00422-026-01061-5 [paper, repository]

Modeling synaptic interactions between mammalian breathing and swallowing central pattern generators.

Journal: Biological cybernetics

Authors' code: ptolmachev/SimplifiedModel_rCPG_swCPG_interaction (MIT)

Status: code verified, 45 files readable, 5 matches

[19] Code ↔ Paper doi:10.1093/braincomms/fcag279 [paper, repository]

Network flexibility facilitates treatment-induced recovery in post-stroke aphasia.

Journal: Brain communications

Authors' code: isaacfalconer/dfc_toolbox (MIT), OSF zja2b (no license)

Status: code verified, 80 files readable, 6 matches

[20] Code ↔ Paper doi:10.1093/nc/niag059 [paper, repository]

Doing the math: detection and neural processing of auditory task-unrelated stimuli while solving arithmetic tasks.

Journal: Neuroscience of consciousness

Authors' code: OSF 5fehs (no license)

Status: code verified, 3 files readable, 2 matches

[21] Code ↔ Paper doi:10.1126/sciadv.adx0731 [paper, repository]

Targeting glial PD-1/PD-L1 restores microglial homeostasis and reduces neuronal hyperactivity in an Alzheimer's disease model.

Journal: Science advances

Authors' code: Zenodo 19411437 (CC-BY-4.0)

Status: code verified, 3 files readable

[22] Code ↔ Paper doi:10.1126/sciadv.aef5358 [paper, repository]

Thalamic modulation of cortical linearity across arousal states.

Journal: Science advances

Authors' code: Zenodo 19905547 (CC-BY-4.0)

Status: code verified, 2 files readable

[23] Code ↔ Paper doi:10.1523/eneuro.0283-26.2026 [paper, repository]

A Cortico-Basal Ganglia-Thalamic Network Model Linking Intermittent Postural Control to Sway-Related Beta-Band Oscillations.

Journal: eNeuro

Authors' code: nomura-taishin/cbgt-intermittent-postural-control (Apache-2.0)

Status: code verified, 12 files readable, 4 matches

[24] Code ↔ Paper doi:10.7554/elife.100880 [paper, repository]

An applicable and efficient retrograde monosynaptic circuit mapping tool for larval zebrafish.

Journal: eLife

Authors' code: navis-org/navis (GPL-3.0), soaringdu/Proj-RVCT (no license)

Status: code verified, 305 files readable, 1 match

Thursday, 17 September 2026 (4 papers)

[25] Code ↔ Paper doi:10.1007/s00422-026-01063-3 [paper, repository]

Increased firing rates monotonically expand neuronal coding bandwidth.

Journal: Biological cybernetics

Authors' code: bendalab/punitmodel (GPL-3.0), doi.gin.g-node.org/10.12751/g-node.5b08du (no license)

Status: code verified, 11 files readable, 10 matches

[26] Code ↔ Paper doi:10.1038/s41514-026-00439-w [paper, repository]

Effects of a three-month exercise programme on cognition, mood and neurogenesis: the NeuroFit randomised controlled trial.

Journal: npj aging

Authors' code: thuretlabkcl/NeuroFit-RCT-Statistical-Code (MIT)

Status: code verified, 5 files readable, 1 match

[27] Code ↔ Paper doi:10.1162/imag.a.1362 [paper, repository]

Human fMRI at 11.7T: Assessing feasibility, stability, and reliability on the Iseult scanner.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zaineb18/tristan_pipeline (MIT)

Status: code verified, 44 files readable, 11 matches

[28] Code ↔ Paper doi:10.1371/journal.pone.0356243 [paper, repository]

Functional organization and natural scene responses across mouse visual cortical areas revealed with encoding manifolds.

Journal: PloS one

Authors' code: dyballa/NeuralEncodingManifolds (BSD-2-Clause)

Status: code verified, 28 files readable, 18 matches

Wednesday, 16 September 2026 (8 papers)

[29] Code ↔ Paper doi:10.1002/advs.77822 [paper, repository]

Temporal Trajectories of the Tau Aggregate Interactome Reveal Stage-Specific Vulnerabilities in Alzheimer's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 17990783 (MIT), dboeken/boeken_tau_aggregate_interactome (MIT)

Status: code verified, 19 files readable, 2 matches

[30] Code ↔ Paper doi:10.1007/s12021-026-09784-3 [paper, repository]

Estimating Mutual Information and Pearson Correlation on Neural Evoked Responses.

Journal: Neuroinformatics

Authors' code: AaltoImagingLanguage/micorr (GPL-3.0)

Status: code verified, 29 files readable, 1 match

[31] Code ↔ Paper doi:10.1007/s12021-026-09817-x [paper, repository]

Circle of Willis-Guided Localization for Simultaneous Detection and Classification of Large Vessel Occlusions in Brain CTA.

Journal: Neuroinformatics

Authors' code: MIC-DKFZ/nnDetection (no license), NIC-VICOROB/CoW-multiclass-segmentation-TopCoW24 (no license)

Status: code verified, 740 files readable, 2 matches

[32] Code ↔ Paper doi:10.1038/s41531-026-01531-4 [paper, repository]

Inconsistent subthalamic local field potential beta activity amid in- and antiphasic neuronal bursts.

Journal: NPJ Parkinson's disease

Authors' code: MaximilianScherer/2026_MS_beta_prevalence (no license), Zenodo 17951551 (CC-BY-4.0), Zenodo 17940236 (CC-BY-4.0)

Status: code verified, 72 files readable, 3 matches

[33] Code ↔ Paper doi:10.1038/s42003-026-10957-8 [paper, repository]

Brain defence by the extracellular matrix protein Cochlin.

Journal: Communications biology

Authors' code: animesh/scripts (GPL-2.0), Raghumoy/Cochlin_manuscript (no license)

Status: code verified, 1,156 files readable, 9 matches

[34] Code ↔ Paper doi:10.1371/journal.pcbi.1014752 [paper, repository]

Hierarchical feature binding in a spiking neural network model of the primate ventral visual pathway.

Journal: PLoS computational biology

Authors' code: BCGardner/feature_binding (AGPL-3.0)

Status: code verified, 187 files readable, 18 matches

[35] Code ↔ Paper doi:10.2147/jir.s633117 [paper, repository]

Single-Nucleus Transcriptomic Mapping Reveals Correlative Microglial Changes Associated with rTMS in the Motor Cortex After Spinal Cord Injury.

Journal: Journal of inflammation research

Authors' code: 10XGenomics/cellranger (MIT)

Status: code verified, 789 files readable, 2 matches

[36] Code ↔ Paper doi:10.7554/elife.101204 [paper, repository]

Larger language models better align with neural representations of natural language.

Journal: eLife

Authors' code: hassonlab/247-pickling (no license), hassonlab/247-encoding (MIT)

Status: code verified, 29 files readable, 4 matches

Tuesday, 15 September 2026 (6 papers)

[37] Code ↔ Paper doi:10.1038/s41467-026-76109-y [paper, repository]

Assistive algorithms influence neural representations in motor brain-computer interfaces.

Journal: Nature communications

Authors' code: pavi-rajes/assistive-sensory-motor-perturbations-influence-learned-neural-representations (no license)

Status: code verified, 53 files readable, 11 matches

[38] Code ↔ Paper doi:10.1038/s44271-026-00524-6 [paper, repository]

Emergent blink rate in early childhood is associated with neural origins of executive function.

Journal: Communications psychology

Authors' code: OSF mrz89 (no license)

Status: code verified, 3 files readable, 6 matches

[39] Code ↔ Paper doi:10.1162/imag.a.1352 [paper, repository]

Brain-age in ultra-low-field MRI: How well does it work?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: james-cole/brainageR (LGPL-3.0), Zenodo 3476365 (other-open), LemuelPuglisi/SynthBA (no license)

Status: code verified, 15 files readable, 2 matches

[40] Code ↔ Paper doi:10.1371/journal.pcbi.1014152 [paper, repository]

Synchronization properties in C. elegans: Relating behavioral circuits to structural and functional neuronal connectivity.

Journal: PLoS computational biology

Authors' code: gourab-sar/C-elegans-synchronization (no license)

Status: code verified, 24 files readable, 7 matches

[41] Code ↔ Paper doi:10.7554/elife.108950 [paper, repository]

Comprehensive RNA velocity by modeling the cascade of gene regulation, transcription, and splicing from single-cell RNA sequencing data with TSvelo.

Journal: eLife

Authors' code: lijc0804/TSvelo (MIT), elenasabbioni/bayvel_notebooks (no license)

Status: code verified, 37 files readable, 8 matches

[42] Code ↔ Paper doi:10.7554/elife.109571 [paper, repository]

Rank- and threat-dependent social modulation of innate defensive behaviors.

Journal: eLife

Authors' code: YatangLiLab/Gao-2026-rank-threat-soical-modulation (Apache-2.0)

Status: code verified, 3 files readable

Monday, 14 September 2026 (2 papers)

[43] Code ↔ Paper doi:10.1038/s41467-026-77800-w [paper, repository]

Learning reorganizes dendritic and stabilizes axon initial segment inhibitory synapses in CA1 pyramidal neurons.

Journal: Nature communications

Authors' code: codeocean:9762429 (no license)

Status: code found, not verified yet

[44] Code ↔ Paper doi:10.1038/s43587-026-01207-x [paper, repository]

A microprotein atlas of the human frontal cortex in Alzheimer's disease.

Journal: Nature aging

Authors' code: huggingface.co/spaces/brmiller/brain-microprotein-atlas-app (MIT), brendan-miller-salk/brain-microprotein-atlas (no license)

Status: code verified, 61 files readable, 29 matches

Saturday, 12 September 2026 (1 paper)

[45] Code ↔ Paper doi:10.1093/braincomms/fcag351 [paper, repository]

Time-resolved aperiodic dynamics in event segmentation in attention-deficit/hyperactivity disorder.

Journal: Brain communications

Authors' code: OSF wexfp (no license)

Status: code verified, 12 files readable, 9 matches

Friday, 11 September 2026 (11 papers)

[46] Code ↔ Paper doi:10.1038/s41598-026-68186-2 [paper, repository]

NeuroStream: spectral-spatio-temporal deep learning for visual stimulus classification from EEG.

Journal: Scientific reports

Authors' code: aim97/Visual-brain-study (GPL-3.0)

Status: code verified, 59 files readable, 10 matches

[47] Code ↔ Paper doi:10.1073/pnas.2608511123 [paper, repository]

Facial palsy reveals the sensorimotor contribution to facial-emotion recognition.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 3yux4 (no license)

Status: code verified, 4 files readable, 2 matches

[48] Code ↔ Paper doi:10.1093/braincomms/fcag333 [paper, repository]

Development and application of a multi-task fusion model using susceptibility-weighted imaging-based substantia nigra and adjacent structures for prognostic prediction of subthalamic nucleus deep brain stimulation in Parkinson's disease.

Journal: Brain communications

Authors' code: ceasorcai/PD (no license)

Status: code verified, 3 files readable, 2 matches

[49] Code ↔ Paper doi:10.1126/sciadv.aeb8889 [paper, repository]

Diverse ancestral myosin motors generate and segregate distinct types of nanocluster-rich domains at the plasma membrane.

Journal: Science advances

Authors' code: Zenodo 21241290 (no license)

Status: dead link

[50] Code ↔ Paper doi:10.1126/sciadv.aec4911 [paper, repository]

Dendritic shaft constrictions shape synaptic integration in neurons.

Journal: Science advances

Authors' code: tonykelly00/DSC_model (no license), tonykelly00/DSC_morphology_pipeline (no license)

Status: code verified, 35 files readable, 4 matches

[51] Code ↔ Paper doi:10.1126/sciadv.aec6658 [paper, repository]

A unifying principle of chromatic coding across biological and artificial systems.

Journal: Science advances

Authors' code: Zenodo 20954249 (CC-BY-4.0)

Status: code verified

[52] Code ↔ Paper doi:10.1126/sciadv.aec9291 [paper, repository]

Computational mechanisms of perception in autism revealed using games inspired by rodent operant tasks.

Journal: Science advances

Authors' code: Zenodo 16998131 (CC0-1.0), Zenodo 20545339 (CC-BY-4.0), ratacad/geode_data (CC0-1.0), ratacad/geode (no license)

Status: code verified, 388 files readable, 9 matches

[53] Code ↔ Paper doi:10.1162/imag.a.1360 [paper, repository]

A dual-fMRI investigation of interpersonal emotion regulation: Predicting strategy selection and implementation success from effective brain connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 8hmrq (no license)

Status: code verified, 4 files readable

[54] Code ↔ Paper doi:10.1162/imag.a.1366 [paper, repository]

MICAFlow: Fast and robust MRI preprocessing bridging research neuroimaging and clinical practice.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MICA-MNI/MICAFlow (GPL-3.0), mica-mni.github.io/micaflow (no license), MICA-MNI/MICAFlow-Models (no license), MICA-MNI/LAMAReg (MIT), MICA-MNI/LAMAR-Models (no license)

Status: code verified, 94 files readable, 17 matches

[55] Code ↔ Paper doi:10.1371/journal.pone.0358044 [paper, repository]

An exploratory fNIRS study on directional asymmetry in segmental discrimination: Lateral-rhotic (/la-ra/) and labial-dorsal (/ba-ga/) contrasts tested in 5- and 9-month-old Japanese infants.

Journal: PloS one

Authors' code: OSF xh6pm (no license)

Status: code verified, 5 files readable, 4 matches

[56] Code ↔ Paper doi:10.1523/eneuro.0328-25.2026 [paper, repository]

Objective Neural Markers of Identity Familiarization via Passive Exposure and Fast Periodic Visual Stimulation EEG.

Journal: eNeuro

Authors' code: OSF 3gxu4 (no license)

Status: empty repository

Thursday, 10 September 2026 (5 papers)

[57] Code ↔ Paper doi:10.1016/j.bbih.2026.101351 [paper, repository]

Associations between chronic placental inflammation, fetal brain development and later autism traits.

Journal: Brain, behavior, & immunity - health

Authors' code: Zenodo 14051966 (CC-BY-4.0), wheelocklab/networklevelanalysis (MIT)

Status: code verified, 197 files readable, 1 match

[58] Code ↔ Paper doi:10.1162/imag.a.1363 [paper, repository]

Social approach-avoidance conflict: Behavioural, emotional, and neural correlates along a depression-social anxiety spectrum.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF uq837 (no license)

Status: code verified, 18 files readable, 2 matches

[59] Code ↔ Paper doi:10.1371/journal.pbio.3003959 [paper, repository]

Recurrent synapses between CO2-sensitive olfactory sensory neurons enable robust CO2 detection in Aedes aegypti mosquitoes.

Journal: PLoS biology

Authors' code: htem/aedes_public (GPL-3.0), Zenodo 21403889 (GPL-3.0)

Status: code verified, 142 files readable, 4 matches

[60] Code ↔ Paper doi:10.1371/journal.pcbi.1013752 [paper, repository]

Calmodulin controls spatial and temporal specificity of calcium-induced calcium release.

Journal: PLoS computational biology

Authors' code: asiaszmek/stochastic_ER (CC-BY-4.0)

Status: code verified, 39 files readable, 2 matches

[61] Code ↔ Paper doi:10.1371/journal.pone.0355902 [paper, repository]

Pericyte-derived cancer-associated fibroblasts correlate with poor survival and are enriched after chemoradiotherapy in glioblastoma.

Journal: PloS one

Authors' code: neuropromotion/CAFs-in-glioblastoma-microenvironment (no license)

Status: code verified, 12 files readable, 5 matches

Wednesday, 9 September 2026 (12 papers)

[62] Code ↔ Paper doi:10.1002/advs.77419 [paper, repository]

Early Spatial and Contextual Coding Deficits in Hippocampal CA1 Precede Performance Decline in an Alzheimer's Disease Model.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: doi:10.5061/dryad.z34tmpgwr (no license)

Status: dead link

[63] Code ↔ Paper doi:10.1016/j.isci.2026.117446 [paper, repository]

Volume-inflation registration (INFREG) for morphometric analysis of human focal cortical dysplasia type II.

Journal: iScience

Authors' code: ifsunrise/brain-inflate-registration (no license), ai-med/Vox2Cortex (GPL-3.0)

Status: code verified, 81 files readable, 2 matches

[64] Code ↔ Paper doi:10.1016/j.isci.2026.117492 [paper, repository]

Neural subspace reorganization reflects value-based decision-making.

Journal: iScience

Authors' code: hdl1115/wmUpdate (no license)

Status: code verified, 5 files readable, 3 matches

[65] Code ↔ Paper doi:10.1016/j.xpro.2026.104833 [paper, repository]

Protocol for mapping frequency-specific information transfer between cortical areas using ECoG and Granger causality.

Journal: STAR protocols

Authors' code: Zenodo 21380181 (CC-BY-4.0)

Status: code verified

[66] Code ↔ Paper doi:10.1073/pnas.2614077123 [paper, repository]

Resolving cell lineages and gene functions in the developing mouse gastrointestinal tract using in utero transduction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: UMarklundLab/Inutero_clonaltracing_E16Gut (MIT)

Status: code verified, 21 files readable, 8 matches

[67] Code ↔ Paper doi:10.1126/sciadv.adq8840 [paper, repository]

Astrocytes mediate the dopaminergic modulation of tonic GABAergic signaling in substantia nigra.

Journal: Science advances

Authors' code: Zenodo 10855006 (CC-BY-4.0), Zenodo 17296457 (CC-BY-4.0)

Status: code verified, 1 file readable

[68] Code ↔ Paper doi:10.1126/sciadv.aeb4205 [paper, repository]

Learning stochastic dynamics and cell-fate landscapes from single-cell snapshots via optimal transport.

Journal: Science advances

Authors' code: allonkleinlab/paper-data (no license), liujuntan/DiffusionOT (MIT), Zenodo 18251638 (CC-BY-4.0)

Status: code verified, 46 files readable, 9 matches

[69] Code ↔ Paper doi:10.1126/sciadv.aee9425 [paper, repository]

Probabilistic inference of homonymous and heteronymous recurrent inhibition in human muscles from large-scale motor neuron recordings.

Journal: Science advances

Authors' code: FrancoisDernoncourt/Mapping_Recurrent_Inhibition (MIT)

Status: code verified, 15 files readable, 21 matches

[70] Code ↔ Paper doi:10.1162/imag.a.1359 [paper, repository]

Distinct roles of brain network flexibility in motor learning across age.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 3fc94 (no license)

Status: code verified, 5 files readable

[71] Code ↔ Paper doi:10.1371/journal.pbio.3003927 [paper, repository]

Brain structural and functional connectivity converge prenatally but diverge after birth.

Journal: PLoS biology

Authors' code: Zenodo 21316924 (CC-BY-4.0), brainlife/BCT (MIT)

Status: code verified, 140 files readable, 4 matches

[72] Code ↔ Paper doi:10.1371/journal.pone.0355826 [paper, repository]

Patent license prediction using deep survival analysis: A comparative study.

Journal: PloS one

Authors' code: takaoarai/PatentLicensePrediction (MIT)

Status: code verified, 10 files readable, 11 matches

[73] Code ↔ Paper doi:10.1523/jneurosci.2178-25.2026 [paper, repository]

Increased Attentive Use Is Linked to More Idiosyncratic Functional Connections.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF g42yd (no license)

Status: empty repository

Tuesday, 8 September 2026 (12 papers)

[74] Code ↔ Paper doi:10.1007/s12021-026-09815-z [paper, repository]

BasNet: Attention U-Net-Based Automated Axon Segmentation in Bielschowsky Silver-Stained Histology.

Journal: Neuroinformatics

Authors' code: Zenodo 19455087 (MIT), lukasschoenenberger/basnet (MIT)

Status: code verified, 28 files readable, 15 matches

[75] Code ↔ Paper doi:10.1038/s41588-026-02737-1 [paper, repository]

Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover.

Journal: Nature genetics

Authors' code: artem-artemov/adrenal (no license), MaksimovDenis/adrenalglandscatlas (MIT), Zenodo 20258071 (CC-BY-4.0)

Status: code verified, 7 files readable, 8 matches

[76] Code ↔ Paper doi:10.1093/braincomms/fcag318 [paper, repository]

Antenatal maternal anaemia and infant brain structure: high-field (3 T) and ultra-low-field (64 mT) MRI findings from South Africa.

Journal: Brain communications

Authors' code: UNITY-Physics (no license), UNITY-Physics/fw-minimorph (MIT), JERingshaw/Khula-Anaemia-Imaging-Analysis (no license)

Status: code verified, 15 files readable, 9 matches

[77] Code ↔ Paper doi:10.1093/braincomms/fcag323 [paper, repository]

Induced epileptic seizures in larval zebrafish reveal a synaptic modulation associated with the post-ictal state.

Journal: Brain communications

Authors' code: OSF sd5jy (no license)

Status: code verified, 24 files readable, 5 matches

[78] Code ↔ Paper doi:10.1162/imag.a.1336 [paper, repository]

Brain network dynamics in the wake-sleep transition reorganize according to task engagement.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF nua4y (no license)

Status: empty repository

[79] Code ↔ Paper doi:10.1162/imag.a.1350 [paper, repository]

Clarifying and extending permutation tests on brain map correspondence through mixed-effects modeling.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: spin-test/spin-test (MIT), frantisekvasa/rotate_parcellation (MIT), qcwang77/brainmap-bootstrap (no license)

Status: code verified, 103 files readable, 2 matches

[80] Code ↔ Paper doi:10.1162/imag.a.1355 [paper, repository]

Taming dimensionality in big neuroimaging data: Efficient orthonormal projective NMF via stochastic learning and data compression.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sotiraslab/csopNMF (Apache-2.0)

Status: code verified, 9 files readable, 2 matches

[81] Code ↔ Paper doi:10.1371/journal.pcbi.1014701 [paper, repository]

Computer models predict differential dendritic vulnerability with ischemia and spreading depression.

Journal: PLoS computational biology

Authors' code: modeldb:244688 (no license), modeldb:185858 (no license), modeldb:2017004 (no license)

Status: code verified

[82] Code ↔ Paper doi:10.1371/journal.pgen.1012126 [paper, repository]

FM-GPT: Bayesian fine mapping for phenome-wide transcriptome-wide association studies.

Journal: PLoS genetics

Authors' code: tacanida/fm-gpt (no license)

Status: code verified, 10 files readable, 2 matches

[83] Code ↔ Paper doi:10.1371/journal.pone.0357448 [paper, repository]

Anatomy-aware, label-informed approach improves image registration for challenging datasets.

Journal: PloS one

Authors' code: raroston/labelImageRegistration_Comparison (no license)

Status: code verified, 8 files readable, 3 matches

[84] Code ↔ Paper doi:10.1523/eneuro.0069-26.2026 [paper, repository]

Electrophysiological Indices of Hierarchical Speech Processing Differentially Reflect the Comprehension of Speech in Noise.

Journal: eNeuro

Authors' code: OSF a285v (no license)

Status: code verified, 8 files readable, 7 matches

[85] Code ↔ Paper doi:10.7554/elife.108021 [paper, repository]

BetaII-spectrin gaps and patches emerge from the patterned assembly of the actin/spectrin membrane skeleton in human motor neuron axons.

Journal: eLife

Authors' code: cibion-conicet/Gollum (GPL-3.0)

Status: code verified, 15 files readable, 1 match

Monday, 7 September 2026 (3 papers)

[86] Code ↔ Paper doi:10.1016/j.isci.2026.117459 [paper, repository]

Behavioral states affect eye position tuning in the parietal cortex of macaques.

Journal: iScience

Authors' code: francescovaccari/NeuralDataAnalysis_MATLAB (BSD-3-Clause)

Status: code verified, 28 files readable, 9 matches

[87] Code ↔ Paper doi:10.1093/braincomms/fcag343 [paper, repository]

Long-term brain volume trajectories and lifestyle associations in cognitively normal adults: the BRAIN-STRIDE study.

Journal: Brain communications

Authors' code: Zenodo 20819668 (MIT)

Status: code verified, 4 files readable, 4 matches

[88] Code ↔ Paper doi:10.7554/elife.110795 [paper, repository]

REM sleep prefrontal high-frequency oscillation chains mediate distinct cortical - hippocampal reactivation patterns compared to NREM sleep.

Journal: eLife

Authors' code: JadhavLab/REMHFOs (MIT)

Status: code verified, 41 files readable, 34 matches

Sunday, 6 September 2026 (2 papers)

[89] Code ↔ Paper doi:10.1002/mco2.70980 [paper, repository]

An Intraoperative EEG Biomarker for Postoperative Delirium Predicting Based on Interpretable Deep Learning Framework.

Journal: MedComm

Authors' code: ncclab-sustech/POD-biomarker (no license)

Status: code verified, 14 files readable, 8 matches

[90] Code ↔ Paper doi:10.1016/j.nicl.2026.104057 [paper, repository]

Tensor-derived diffusion MRI metrics and NODDI in multiple sclerosis classification.

Journal: NeuroImage. Clinical

Authors' code: Zenodo 20512670 (CC-BY-4.0)

Status: code verified

Saturday, 5 September 2026 (6 papers)

[91] Code ↔ Paper doi:10.1002/epi4.70336 [paper, repository]

Quantifying extra-lesional interhemispheric cortical asymmetry in focal cortical dysplasia type II.

Journal: Epilepsia open

Authors' code: faezeheidari/FCD_Asymmetry (MIT)

Status: code verified, 3 files readable, 2 matches

[92] Code ↔ Paper doi:10.1016/j.ebiom.2026.106469 [paper, repository]

Residential early-life air pollution exposure and oculomotor markers of cognitive workload in children: a prospective birth cohort study.

Journal: EBioMedicine

Authors' code: Limburgsgeboortecohort/Residential-air-pollution-oculomotor-markers (no license)

Status: code verified, 13 files readable, 9 matches

[93] Code ↔ Paper doi:10.1038/s41467-026-77377-4 [paper, repository]

Ternary Neurexin-T178-PTPR complexes represent a pre-synaptic core-module of neuronal synapse organization.

Journal: Nature communications

Authors' code: phys2/belki (GPL-3.0)

Status: code verified, 98 files readable, 3 matches

[94] Code ↔ Paper doi:10.1093/nc/niag046 [paper, repository]

Awareness of being: a computational neurophenomenological model of mindfulness, mind-wandering, and meta-attentional control.

Journal: Neuroscience of consciousness

Authors' code: h-idei/mbhrnn (Apache-2.0)

Status: code verified, 6 files readable

[95] Code ↔ Paper doi:10.21769/bioprotoc.5801 [paper, repository]

Quantitative Analysis of Axonal Degeneration and TDP-43 Aggregation in Compartmentalized Human iPSC-Derived Motor Neuron-Myotube Co-cultures.

Journal: Bio-protocol

Authors' code: PerlsonLab/Bioprotocol (MIT)

Status: code verified, 4 files readable

[96] Code ↔ Paper doi:10.3390/diagnostics16172861 [paper, repository]

Microstructural Changes in the Corpus Callosum in Different Forms of Sporadic Age-Related Cerebral Small Vessel Disease.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: mikhail-matrosov/classibundler (no license)

Status: code verified, 15 files readable, 2 matches

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