OSCR

Open Scientific Code Registry

OSCR lists the code that the authors of open-access neuroscience papers published with their work. A program reads each paper for links to that code, visits each repository where it is hosted, and records the commit it found and its licence. Each paper's page shows the code beside the paper in the Code ↔ Paper reader, which marks the lines of code that match each paragraph. The site is free and needs no account to read.

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Catalogue of 13 November 2026, 10:21 UTC.

221,291
open-access neuroscience papers read
24,189
with their authors' code; 15% of the research articles have it
33,267
code repositories, 31,639 answering at the last check
1,478,831
scripts read at the source
16,061
papers with Code ↔ Paper matches (105,686 matches)

The latest papers with their authors' code

The 98 papers of the catalogue's 20 latest days of publication, from 21 October 2026 to 12 November 2026. Every older paper is in the list by date.

Thursday, 12 November 2026 (2 papers)

[1] Code ↔ Paper doi: [paper, repository]
TSCNet: transformer-simplicial convolutional network for functional brain network classification
Journal: Frontiers in medicine
Authors' code: 922397935/tscnet_main_v1 (no license)
Status: code verified, 30 files readable, 2 matches
[2] Code ↔ Paper doi: [paper, repository]
Cholinergic blockade reveals a role for human hippocampal theta in memory encoding but not retrieval
Journal: eLife
Authors' code: tgedankien/AR_scopolamine (MIT)
Status: empty repository, 2 files readable

Wednesday, 11 November 2026 (3 papers)

[3] Code ↔ Paper doi:10.1083/jcb.202604185 [paper, repository]
The Cxcl14 chemokine defines pioneer axon guidance and early circuit assembly in the inner ear.
Journal: The Journal of cell biology
Authors' code: anechipor/Rumbo_et_al_2026 (no license)
Status: code verified, 1 file readable, 2 matches
[4] Code ↔ Paper doi:10.1098/rsos.261544 [paper, repository]
Structurally related Ca<sup>2+</sup>-release activated Ca<sup>2+</sup> channel inhibitors exhibit distinct extracellular and intracellular modes of action.
Journal: Royal Society open science
Authors' code: Zenodo 21357627 (CC-BY-4.0), doi:10.6084/m9.figshare.c.8775182 (no license)
Status: code verified
[5] Code ↔ Paper doi: [paper, repository]
Two minds, one body: neural correlates of processing of We-information during shared control over a humanoid robot
Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences
Authors' code: doi:10.6084/m9.figshare.c.8718634 (no license)
Status: code found, still to be checked

Tuesday, 10 November 2026 (5 papers)

[6] Code ↔ Paper doi:10.1093/nargab/lqag140 [paper, repository]
scMINA: an interpretable workflow for paired scRNA-scATAC multiome integration and regulatory prioritization.
Journal: NAR genomics and bioinformatics
Authors' code: quon-titative-biology/scpair (MIT), bioFAM/mofapy2 (LGPL-3.0), bioFAM/mofax (MIT), ShuwenZhangswz/scMINA (MIT), Zenodo 19582768 (MIT)
Status: code verified, 113 files readable, 9 matches
[7] Code ↔ Paper doi:10.1186/s12874-026-03050-5 [paper, repository]
A comprehensive simulation study evaluating the predictive performance of Cox proportional hazards model and machine learning methods for time-to-event data.
Journal: BMC medical research methodology
Authors' code: Josline90/Cox-vs-ML-models-for-time-to-event-data_A-simulation-study (no license)
Status: code verified, 9 files readable, 4 matches
[8] Code ↔ Paper doi:10.1371/journal.pone.0338580 [paper, repository]
Testing for interactions in multivariate data.
Journal: PloS one
Authors' code: wpennyUEA/MLC (no license)
Status: code verified, 134 files readable, 12 matches
[9] Code ↔ Paper doi:10.1523/eneuro.0146-26.2026 [paper, repository]
Remembered Event Features Shape Default Mode Network Engagement during Emotional Memory Recall.
Journal: eNeuro
Authors' code: memobc/reframe-detail-paper (no license)
Status: code verified, 7 files readable, 1 match
[10] Code ↔ Paper doi:10.7554/elife.106826 [paper, repository]
Midbrain somatostatin-expressing cells control pain-suppression during defensive states.
Journal: eLife
Authors' code: djercog/TestoFreez (MIT)
Status: code verified, 3 files readable

Monday, 9 November 2026 (3 papers)

[11] Code ↔ Paper doi:10.1038/s41467-026-77651-5 [paper, repository]
Single-cell machine learning uncovers genetically anchored, cell-type specific programs of Alzheimer's disease.
Journal: Nature communications
Authors' code: AdiVM/TriSCOPE_RNASeq_Alzheimers_Analysis (MIT), Zenodo 21793738 (MIT)
Status: code verified, 220 files readable, 40 matches
[12] Code ↔ Paper doi:10.1038/s41467-026-79055-x [paper, repository]
Calpain-mediated TBP cleavage disturbs neuronal AMOT-YAP1 signalling.
Journal: Nature communications
Authors' code: Zenodo 22231266 (CC-BY-4.0)
Status: code verified
[13] Code ↔ Paper doi:10.1162/imag.a.1447 [paper, repository]
The MTL200: A surface-based, probabilistic atlas of the medial temporal lobe.
Journal: Imaging neuroscience (Cambridge, Mass.)
Authors' code: SocialMemoryLab/MTL200 (CC-BY-4.0)
Status: code verified, 14 files readable, 4 matches

Friday, 6 November 2026 (10 papers)

[14] Code ↔ Paper doi:10.1007/s00422-026-01074-0 [paper, repository]
Multiple mechanisms of rhythm switching in recurrent neural networks with adaptive time constants.
Journal: Biological cybernetics
Authors' code: cncs-fit/rnn-rhythm (MIT), Zenodo 21900320 (MIT)
Status: code verified, 54 files readable, 30 matches
[15] Code ↔ Paper doi:10.1038/s41467-026-78777-2 [paper, repository]
Redundancy maximization as a principle of associative memory learning in Hopfield networks.
Journal: Nature communications
Authors' code: Priesemann-Group/Infomorphic_Networks (BSD-3-Clause)
Status: code verified, 41 files readable, 4 matches
[16] Code ↔ Paper doi:10.1038/s41746-026-03424-5 [paper, repository]
Evaluation of PainWaive: a consumer-grade EEG headset for remote EEG monitoring and neurofeedback research in chronic pain.
Journal: NPJ digital medicine
Authors' code: DrNahianC/PainWaive-Evaluation-Paper (no license)
Status: code verified, 2 files readable, 6 matches
[17] Code ↔ Paper doi:10.1126/sciadv.aej4381 [paper, repository]
CD8<sup>+</sup> T cells induce RIPK1-regulated brain endothelial cell death in cerebral malaria.
Journal: Science advances
Authors' code: Zenodo 22685549 (no license)
Status: dead link
[18] Code ↔ Paper doi:10.1371/journal.pone.0353088 [paper, repository]
Intravenous midazolam alters short-interval paired-pulse TMS responses differently in younger and older adults.
Journal: PloS one
Authors' code: Zenodo 20734853 (CC-BY-4.0)
Status: code verified, 1 file readable, 1 match
[19] Code ↔ Paper doi:10.7554/elife.109742 [paper, repository]
Simple methods to acutely measure multiple timing metrics among the sexual repertoire of male <i>Drosophila</i>.
Journal: eLife
Authors' code: hcls-kimlab/drosomating (MIT), liuxiao916/Fruit_Flies (MIT)
Status: code verified, 24 files readable
[20] Code ↔ Paper doi:10.7554/elife.110315 [paper, repository]
Expectation-driven gain modulation of preparatory spatial attention.
Journal: eLife
Authors' code: OSF 46a3x (no license), dvanmoorselaar/DvM (MIT), dvanmoorselaar/open_dvm (MIT)
Status: code verified, 150 files readable, 11 matches
[21] Code ↔ Paper doi: [paper, repository]
Common transcriptional changes in the brain during hibernation and Alzheimer’s disease
Journal: Science advances
Authors' code: aertslab/create_cisTarget_databases (no license), Zenodo 5751297 (other-open), vib-singlecell-nf/scenic (no license), vib-singlecell-nf/vsn-pipelines (GPL-3.0)
Status: code verified, 185 files readable, 5 matches
[22] Code ↔ Paper doi: [paper, repository]
A functional connectome identifies vulnerability to cognitive decline and Alzheimer’s disease progression
Journal: Science advances
Authors' code: Zenodo 20073656 (CC-BY-4.0), zhangyubrain/Alzheimers-resilient-connectome (no license)
Status: code verified, 4 files readable, 3 matches
[23] Code ↔ Paper doi: [paper, repository]
Ultrasound neural interface enabling acute spinal cord monitoring and blood flow modulation
Journal: Science advances
Authors' code: Zenodo 22908234 (no license), Zenodo 22907737 (Apache-2.0), Zenodo 22908477 (no license)
Status: code verified, 282 files readable, 2 matches

Thursday, 5 November 2026 (1 paper)

[24] Code ↔ Paper doi: [paper, repository]
Anisotropic conductivity modeling for tDCS in Parkinson’s disease using multidimensional diffusion MRI
Journal: Frontiers in human neuroscience
Authors' code: santioso-hue/MRE-tDCS-PD (MIT)
Status: code verified, 40 files readable, 21 matches

Wednesday, 4 November 2026 (1 paper)

[25] Code ↔ Paper doi:10.1088/1741-2552/aeb82d [paper, repository]
NeuroTest: a benchtop testbed for evaluating sensing-capable electrophysiology and neurostimulation systems.
Journal: Journal of neural engineering
Authors' code: uw-herron-lab/NeuroTest-Board (other)
Status: code verified, 11 files readable

Tuesday, 3 November 2026 (1 paper)

[26] Code ↔ Paper doi:10.1088/1741-2552/aeb331 [paper, repository]
GROND: automated characterization of periodic and rhythmic EEG patterns.
Journal: Journal of neural engineering
Authors' code: bdsp-core/grond (CC-BY-NC-4.0)
Status: code verified, 436 files readable, 40 matches

Monday, 2 November 2026 (3 papers)

[27] Code ↔ Paper doi:10.1038/s41467-026-78908-9 [paper, repository]
Reconstructing the single-cell spatiotemporal dynamics of glioblastoma invasion.
Journal: Nature communications
Authors' code: Gliomethods/GlioTrace (Apache-2.0), doi:10.5281/zenodo-21996609 (no license)
Status: code verified, 45 files readable, 17 matches
[28] Code ↔ Paper doi:10.1172/jci195110 [paper, repository]
Cerebellar and frontal lobe alterations in pulmonary hypertension implicate an inflammatory lung vascular/brain axis.
Journal: The Journal of clinical investigation
Authors' code: PittVMIOSB/Okawa_et_al (no license)
Status: code verified, 5 files readable, 2 matches
[29] Code ↔ Paper doi:10.7554/elife.107110 [paper, repository]
Behavioural and neurogenetic evidence for emotion primitives in the fruit fly <i>Drosophila</i> from an open field test.
Journal: eLife
Authors' code: r-project.org (no license), supp:PMC13727074/elife-107110-code1.zip (no license), supp:PMC13727074/elife-107110-code2.zip (no license)
Status: code verified

Sunday, 1 November 2026 (16 papers)

[30] Code ↔ Paper doi:10.1002/acm2.70886 [paper, repository]
Technical development and implementation of 3D-QALAS on a 1.5T MR-Linac for the brain: A prospective R-IDEAL stage 0/1 technology development report.
Journal: Journal of applied clinical medical physics
Authors' code: Lucas-Mc/QALAS-MRL_R-IDEAL_0-1 (GPL-3.0)
Status: code verified, 3 files readable
[31] Code ↔ Paper doi:10.1002/ctm2.70862 [paper, repository]
The microbiome and brain metastasis in non-small cell lung cancer: A graded appraisal and a framework for prevention-oriented research.
Journal: Clinical and translational medicine
Authors' code: sjdlabgroup/SAHMI (other)
Status: code verified, 11 files readable
[32] Code ↔ Paper doi:10.1002/glia.70220 [paper, repository]
Müller Glia Subtypes Define Neuro-Glial Associations and Spatial Morphogen Axes in the Zebrafish Retina.
Journal: Glia
Authors' code: s-storey/storey-muller-glia-heterogeneity-2026 (no license)
Status: code verified, 9 files readable, 16 matches
[33] Code ↔ Paper doi:10.1002/glia.70230 [paper, repository]
Glial Dysfunction and Memory Impairments in a Model of Pediatric Obstructive Sleep Apnea.
Journal: Glia
Authors' code: cjy8s/Glial-Dysfunction-POSA (no license)
Status: code verified, 2 files readable, 2 matches
[34] Code ↔ Paper doi:10.1002/hipo.70137 [paper, repository]
Temporal Interference Modulates Medial Temporal and Frontoparietal Activity During Mnemonic Discrimination: A High-Resolution Whole-Brain fMRI Investigation.
Journal: Hippocampus
Authors' code: celstark/MST (no license)
Status: code verified, 21 files readable
[35] Code ↔ Paper doi:10.1002/hipo.70139 [paper, repository]
Quantitative Assessment of Mesoscale Cellular Order and Organization in the Mouse Hippocampus.
Journal: Hippocampus
Authors' code: gitlab.mpcdf.mpg.de/konmi/image-analysis-ui (no license)
Status: code verified, 8 files readable, 3 matches
[36] Code ↔ Paper doi:10.1002/hipo.70141 [paper, repository]
The Strength of Target Representations Drives Mnemonic Discrimination: Evidence From Extended Delay and Hippocampal Damage.
Journal: Hippocampus
Authors' code: OSF sw69d (no license)
Status: code found, still to be checked
[37] Code ↔ Paper doi:10.1002/hipo.70144 [paper, repository]
Hippocampal Subfield Volumes and Spatial Memory Performance in Older Adults At-Risk for Type 2 Diabetes.
Journal: Hippocampus
Authors' code: Zenodo 7577008 (other-open), dpalmer9/touchcog (GPL-3.0)
Status: code verified, 55 files readable
[38] Code ↔ Paper doi:10.1093/bib/bbag601 [paper, repository]
ADInteractome: discovering Alzheimer's disease-associated gene interactions from single-nucleus RNA-seq data through neural interaction states.
Journal: Briefings in bioinformatics
Authors' code: Evan810828/ADInteractome (no license)
Status: code verified, 49 files readable, 6 matches
[39] Code ↔ Paper doi:10.1093/brain/awag105 [paper, repository]
Medial temporal lobe tau-neurodegeneration mismatch from structural imaging and plasma biomarkers.
Journal: Brain : a journal of neurology
Authors' code: xueying-lyu/mismatch (MIT), pyushkevich/cmrep (GPL-3.0)
Status: code verified, 116 files readable, 6 matches
[40] Code ↔ Paper doi:10.1093/brain/awag114 [paper, repository]
Quantitative pathology and APOE genotype reveal dementia risk and progression in Lewy body disease.
Journal: Brain : a journal of neurology
Authors' code: Zenodo 18315069 (CC-BY-4.0)
Status: code verified, 6 files readable, 7 matches
[41] Code ↔ Paper doi:10.1093/brain/awag204 [paper, repository]
Tyrosyl-tRNA sequestration triggers tyrosyl-tRNA synthetase-associated peripheral neuropathy.
Journal: Brain : a journal of neurology
Authors' code: AlexanderBartholomaeus/MiMB_ribosome_profiling (MIT)
Status: code verified, 16 files readable
[42] Code ↔ Paper doi:10.1111/cogs.70271 [paper, repository]
Computation or Weight Adaptation? Rethinking the Role of Plasticity in Learning.
Journal: Cognitive science
Authors' code: colab.research.google.com/drive/1llf_gxk9zq4yl6c7f3gnaz7fqsateimf (no license)
Status: code verified
[43] Code ↔ Paper doi:10.1111/jne.70298 [paper, repository]
Arcuate kisspeptin neurons display two types of calcium events: Regulation by sex, gonads, and senktide.
Journal: Journal of neuroendocrinology
Authors' code: syncytium2/KNDy-Ca-1 (MIT), gibson-amandag/ArcKissCa_analysis (no license)
Status: code verified, 301 files readable, 5 matches
[44] Code ↔ Paper doi:10.1111/mec.70614 [paper, repository]
Brain Transcriptomic Changes Associated With the Socially Regulated Behavioural Specialisation of Ant Queens.
Journal: Molecular ecology
Authors' code: supp:PMC13724878/MEC-35-e70614-s003.zip (no license)
Status: code verified, 1 file readable, 9 matches
[45] Code ↔ Paper doi: [paper, repository]
The human hippocampus supports auditory coding and multisensory integration
Journal: PLoS biology
Authors' code: omriraccah/multimem_fMRI_expt (no license), omriraccah/multimem_fMRI_analysis (MIT), Zenodo 22150287 (MIT)
Status: code verified, 63 files readable, 16 matches

Saturday, 31 October 2026 (2 papers)

[46] Code ↔ Paper doi: [paper, repository]
An automated EEG–ECG framework for CAP–HRV analysis: enabling brain–heart coupling studies in sleep disorders
Journal: Frontiers in physiology
Authors' code: ahsankhandoker/CAP-HRV (CC-BY-4.0)
Status: code verified, 7 files readable, 8 matches
[47] Code ↔ Paper doi: [paper, repository]
Brain PDGFRβ+ Cells Exhibit Diverse Reactive Phenotypes After Stroke Without Requiring KLF4
Journal: Glia
Authors' code: Zenodo 13948420 (CC-BY-4.0), elalilab/stroke_pdgfr-b_reactivity (no license)
Status: code verified, 71 files readable, 21 matches

Friday, 30 October 2026 (10 papers)

[48] Code ↔ Paper doi:10.1007/s12975-026-01503-z [paper, repository]
High Spatial Resolution <sup>23</sup>Na-MRI for Ischemic Brain Injury Detection.
Journal: Translational stroke research
Authors' code: tnnc.mgh.harvard.edu/method (no license)
Status: code verified
[49] Code ↔ Paper doi:10.1038/s41746-026-03406-7 [paper, repository]
AnySleep: a channel-agnostic deep learning system for high-resolution sleep staging in multi-center cohorts.
Journal: NPJ digital medicine
Authors' code: dslaborg/AnySleep (MIT), Zenodo 23764134 (MIT), Zenodo 23764135 (MIT)
Status: code verified, 96 files readable, 20 matches
[50] Code ↔ Paper doi:10.1126/sciadv.ady5085 [paper, repository]
Decoder-FFPE-seq enables sensitive, genome-wide spatial transcriptomics of archival tissues at single-cell resolution.
Journal: Science advances
Authors' code: HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite (MIT), Zenodo 19872452 (CC-BY-4.0), Zenodo 19873057 (GPL-3.0), DynamicBiosystems/DynamicST (GPL-3.0), DynamicBiosystems/DynamicST-Assist (no license), Zenodo 19872995 (CC-BY-4.0), MIW-91/Decoder-FFPE-seq (no license), miw-91/dynamicst-assist (no license)
Status: code verified, 122 files readable, 22 matches
[51] Code ↔ Paper doi:10.1126/sciadv.aef9907 [paper, repository]
Intrinsic cellular persistent firing sustains hippocampal spatial representations during working memory.
Journal: Science advances
Authors' code: Zenodo 21775727 (CC-BY-4.0)
Status: code verified, 61 files readable, 9 matches
[52] Code ↔ Paper doi:10.1371/journal.pcbi.1014906 [paper, repository]
Interpretable embeddings of speech explain and enhance the brain encoding performance of audio models.
Journal: PLoS computational biology
Authors' code: Zenodo 22296432 (CC-BY-4.0)
Status: code verified, 61 files readable, 15 matches
[53] Code ↔ Paper doi:10.1371/journal.pone.0360923 [paper, repository]
An integrated machine learning framework for cerebral aneurysm rupture status classification using clinical, morphological, and hemodynamic features.
Journal: PloS one
Authors' code: mstf229/Cerebral-Aneurysm-Rupture-Prediction (no license)
Status: code verified, 3 files readable, 19 matches
[54] Code ↔ Paper doi:10.1371/journal.pone.0361502 [paper, repository]
BitterBuster: A virtual world for understanding naturalistic patch foraging.
Journal: PloS one
Authors' code: CoAxLab/BitterBusterTIER (no license), CoAxLab/BitterBusterForagingPaperRelease (CC-BY-NC-SA-4.0)
Status: code verified, 19 files readable, 1 match
[55] Code ↔ Paper doi:10.7554/elife.102095 [paper, repository]
Distinct gradients of cortical architecture capture visual representations and behavior across the lifespan.
Journal: eLife
Authors' code: BNUCNL/VisualCortexGradient (GPL-3.0), gomezj/entorhinal_prf (no license)
Status: code verified, 55 files readable, 11 matches
[56] Code ↔ Paper doi:10.7554/elife.108212 [paper, repository]
Oxytocin neurons signal state-dependent transitions from rest to thermogenesis and behavioral arousal.
Journal: eLife
Authors' code: Zenodo 2652896 (other-open), j-landen/seq_process (MIT), j-landen/SGBS (MIT), OSF x9kcj (no license), gtatters/thermimagej (MIT)
Status: code verified, 24 files readable, 7 matches
[57] Code ↔ Paper doi: [paper, repository]
Intrinsic cellular persistent firing sustains hippocampal spatial representations during working memory
Journal: Science advances
Authors' code: Zenodo 21775727 (CC-BY-4.0)
Status: code verified, 61 files readable, 9 matches

Thursday, 29 October 2026 (2 papers)

[58] Code ↔ Paper doi:10.1371/journal.pone.0360526 [paper, repository]
Sex- and age-specific development of ssRNA virus receptor expression in the human brain.
Journal: PloS one
Authors' code: OSF 4fgka (no license)
Status: code verified, 16 files readable, 26 matches
[59] Code ↔ Paper doi:10.1371/journal.pone.0360617 [paper, repository]
Understanding Glymphatic's Role In Proteinopathies (GRIP): A single centre case-control study protocol.
Journal: PloS one
Authors' code: jorgenriseth/grip-mixed (MIT)
Status: code verified, 4 files readable

Wednesday, 28 October 2026 (9 papers)

[60] Code ↔ Paper doi:10.1002/advs.78528 [paper, repository]
Disrupted Top-Down Modulation as a Mechanism of Impaired Multisensory Processing in Autistic Children.
Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)
Authors' code: tvanneau/SFARI-AVSRT (no license)
Status: dead link
[61] Code ↔ Paper doi:10.1038/s41467-026-78769-2 [paper, repository]
Computational modeling and preclinical evaluation support targeting somatic instability for Huntington's disease treatment.
Journal: Nature communications
Authors' code: LatusBio/HD_Model_NatComm_Publication (no license), Zenodo 22118021 (CC-BY-4.0), Zenodo 22118020 (CC-BY-4.0)
Status: code verified, 15 files readable, 7 matches
[62] Code ↔ Paper doi:10.1126/sciadv.aei2661 [paper, repository]
Presynaptic filopodia form kinapses and promote convective membrane flow to sustain synchronous neurotransmitter release.
Journal: Science advances
Authors' code: Zenodo 19667730 (CC-BY-4.0), jliu187/presynaptic-terminal-flow (no license)
Status: code verified, 8 files readable, 3 matches
[63] Code ↔ Paper doi:10.1371/journal.pcbi.1014878 [paper, repository]
Modeling reaction-diffusion processes in simplified to complex astroglial branchlet geometries using different simulation tools.
Journal: PLoS computational biology
Authors' code: google/neuroglancer (Apache-2.0), Zenodo 22041896 (GPL-3.0)
Status: code verified, 936 files readable, 21 matches
[64] Code ↔ Paper doi:10.1371/journal.pdig.0001127 [paper, repository]
Longitudinal patterns of digital parenting restrictions and adolescent screen use: Insights from the Adolescent Brain Cognitive Development (ABCD) study.
Journal: PLOS digital health
Authors' code: Daniel-Adan-Lopez/ABCD_ParentProfiles (no license)
Status: empty repository
[65] Code ↔ Paper doi:10.1523/jneurosci.2108-25.2026 [paper, repository]
Synchronous Activity in the Auditory Forebrain Represents Temporal Landmarks in Vocal Communication Signals.
Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience
Authors' code: gentnerlab/pyoperant (BSD-3-Clause), robince/gcmi (GPL-3.0), amirmasoud92/ZF_Neural_Decoding (no license)
Status: code verified, 197 files readable, 9 matches
[66] Code ↔ Paper doi:10.34133/cbsystems.0701 [paper, repository]
Beyond Static Representations: Learning Electroencephalogram Spatiotemporal Dynamics for Enhanced Emotion Recognition.
Journal: Cyborg and bionic systems (Washington, D.C.)
Authors' code: Raizeroko/DSE-TAM (no license)
Status: code verified, 16 files readable, 9 matches
[67] Code ↔ Paper doi:10.7554/elife.100827 [paper, repository]
Ultrasound neuromodulation hypotheses on the directionality of effects and community resource.
Journal: eLife
Authors' code: OSF arqp8 (no license)
Status: code verified, 3 files readable, 2 matches
[68] Code ↔ Paper doi:10.7554/elife.110314 [paper, repository]
Loose coupling between Ca&lt;sup&gt;2+&lt;/sup&gt; channels and release sensors as a synaptic correlate of higher-order brain function.
Journal: eLife
Authors' code: Hartmut-Schmidt/eLife2026 (MIT)
Status: code verified, 7 files readable

Tuesday, 27 October 2026 (11 papers)

[69] Code ↔ Paper doi:10.1038/s41421-026-00928-y [paper, repository]
A droplet-based long-read single-cell epigenome sequencing method for the high-throughput profiling of multidimensional regulatory elements within individual cells.
Journal: Cell discovery
Authors' code: mskilab-org/gUtils (GPL-2.0), LuJiansen/dscNanoSeq (MIT), Zenodo 15102690 (CC-BY-4.0), LuJiansen/AS-C.Origami (no license), Zenodo 21389362 (CC-BY-4.0)
Status: code verified, 43 files readable, 8 matches
[70] Code ↔ Paper doi:10.1038/s42003-026-11157-0 [paper, repository]
A NEST-based framework unlocks massively parallel simulation of networks of multi-compartment neurons with customizable subcellular dynamics.
Journal: Communications biology
Authors' code: Zenodo 22878144 (CC-BY-4.0), willemwybo/wta-states (no license), jugit.fz-juelich.de/w.wybo/ca-adex (no license), Zenodo 10125416 (GPL-2.0), Zenodo 20757797 (GPL-2.0)
Status: code verified, 16 files readable, 5 matches
[71] Code ↔ Paper doi:10.1084/jem.20260104 [paper, repository]
Alzheimer's genetic risk factor CASS4 controls microglial focal adhesion biology and amyloidosis.
Journal: The Journal of experimental medicine
Authors' code: LukensLab (no license)
Status: code verified
[72] Code ↔ Paper doi:10.1162/imag.a.1397 [paper, repository]
Hemisphere fingerprinting: Identifying left and right hemispheres using functional connectivity.
Journal: Imaging neuroscience (Cambridge, Mass.)
Authors' code: TrevorKMDay/hemidentification (no license), TrevorKMDay/glasser_LR_overlap (no license)
Status: code verified, 97 files readable, 10 matches
[73] Code ↔ Paper doi:10.1162/imag.a.1411 [paper, repository]
Bayesian brain mapping: A population-informed framework for personalized functional network topography and connectivity.
Journal: Imaging neuroscience (Cambridge, Mass.)
Authors' code: statMINDlab/BBM-demo (no license), mandymejia/BayesBrainMap (no license)
Status: code verified, 67 files readable, 16 matches
[74] Code ↔ Paper doi:10.1162/imag.a.1415 [paper, repository]
A generative framework for estimating brain energy landscapes from continuous neuroimaging observations.
Journal: Imaging neuroscience (Cambridge, Mass.)
Authors' code: psalmhim/pMEM-EEGMEG (no license)
Status: code verified, 6 files readable, 7 matches
[75] Code ↔ Paper doi:10.1162/imag.a.1420 [paper, repository]
Substantial evidence against sex differences in bed nucleus of the stria terminalis volume in the human brain.
Journal: Imaging neuroscience (Cambridge, Mass.)
Authors' code: mattelisi/mlisi (no license), El-Suri/Substantial-evidence-against-sex-differences-in-bed-nucleus-of-the-stria-terminalis-volume (MIT)
Status: code verified, 61 files readable, 9 matches
[76] Code ↔ Paper doi:10.1371/journal.pcbi.1014879 [paper, repository]
Evolutionary and dynamic constraints converge on a conserved coupling sector in thermally adapted GH1 β-glucosidases.
Journal: PLoS computational biology
Authors' code: zh-l-t/GH1--Glucosidase (no license)
Status: code verified, 117 files readable, 4 matches
[77] Code ↔ Paper doi:10.1371/journal.pone.0360636 [paper, repository]
Causality-enhanced and symmetry-preserving PINNs for damped elastodynamic PDEs.
Journal: PloS one
Authors' code: shahbaz1982/Symmetry-PINNs- (MIT)
Status: code verified, 6 files readable, 3 matches
[78] Code ↔ Paper doi:10.1523/eneuro.0394-25.2026 [paper, repository]
ACORN: Adaptive Consensus of Repeated Clusterings Identifies Pyramidal Neurons and Interneurons in the Primate Motor Cortex Based on Extracellular Spike Waveforms.
Journal: eNeuro
Authors' code: zolts/ACORN (no license)
Status: code verified, 7 files readable, 3 matches
[79] Code ↔ Paper doi:10.3758/s13423-026-03037-9 [paper, repository]
Does the reading brain possess top-down connections from morphemes to letters?
Journal: Psychonomic bulletin & review
Authors' code: OSF 8z43h (no license)
Status: code verified, 7 files readable, 4 matches

Monday, 26 October 2026 (2 papers)

[80] Code ↔ Paper doi:10.1038/s41392-026-02794-2 [paper, repository]
Spatiotemporally resolved single-nucleus transcriptomics reveals cellular and regional vulnerability in the midbrain in Parkinson's disease.
Journal: Signal transduction and targeted therapy
Authors' code: whistle-ch0i/SNUH_PD_analysis (no license)
Status: code verified, 10 files readable, 5 matches
[81] Code ↔ Paper doi: [paper, repository]
Maternal microbiota shapes brain and neuroendocrine development in piglets
Journal: iMeta
Authors' code: minwenl203-ctrl/Brain-gut-axis-in-germ-free-piglets (MIT)
Status: code verified, 17 files readable, 12 matches

Saturday, 24 October 2026 (2 papers)

[82] Code ↔ Paper doi: [paper, repository]
Macroscopic cerebral energy efficiency corresponds to neuron reorganization in awake and anesthetized mice
Journal: Frontiers in neuroscience
Authors' code: soltanianzadeh/STNeuroNet (Apache-2.0)
Status: code verified, 59 files readable
[83] Code ↔ Paper doi: [paper, repository]
Large language models poorly capture how word order shapes representations of sentence meaning in the human brain
Journal: eLife
Authors' code: Fods12/sentence-meaning-in-the-brain (Apache-2.0)
Status: code verified, 24 files readable, 14 matches

Friday, 23 October 2026 (3 papers)

[84] Code ↔ Paper doi:10.1126/sciadv.adx5564 [paper, repository]
Biophysically constrained learning from healthy neural priors improves motor decoding in pathological cortical networks.
Journal: Science advances
Authors' code: Zenodo 20363750 (CC-BY-4.0)
Status: code verified, 2 files readable
[85] Code ↔ Paper doi:10.1126/sciadv.aeg5791 [paper, repository]
Retroviral insertions contributed to the divergence of human and chimpanzee brains.
Journal: Science advances
Authors' code: PatricJernLab/RetroTector (MIT), Molecular-Neurogenetics/LINC00662_PTERV_Gerdes2025 (no license), Zenodo 21493999 (CC-BY-4.0)
Status: code verified, 76 files readable, 23 matches
[86] Code ↔ Paper doi:10.7554/elife.108442 [paper, repository]
Large language models poorly capture how word order shapes representations of sentence meaning in the human brain.
Journal: eLife
Authors' code: Fods12/sentence-meaning-in-the-brain (Apache-2.0)
Status: code verified, 24 files readable, 14 matches

Thursday, 22 October 2026 (2 papers)

[87] Code ↔ Paper doi:10.1007/s00429-026-03213-6 [paper, repository]
Quantifying dexterity and grip strength associations between age, cognitive function (MoCA), and cerebellar gray matter volume in healthy adults across the adult lifespan.
Journal: Brain structure & function
Authors' code: Zenodo 21246441 (CC-BY-NC-4.0), rnorlund/brainWhiz (CC-BY-NC-4.0)
Status: code verified, 77 files readable, 6 matches
[88] Code ↔ Paper doi:10.1371/journal.pbio.3003820 [paper, repository]
A cortical semantic map integrates fractions and integers in the human brain.
Journal: PLoS biology
Authors' code: OSF jqcna (no license), OSF 267s5 (no license)
Status: code verified, 26 files readable, 9 matches

Wednesday, 21 October 2026 (10 papers)

[89] Code ↔ Paper doi:10.1002/gps3.70062 [paper, repository]
Astrocyte-enriched and cilia-related genetic signatures in dementia: A whole-exome sequencing study.
Journal: General psychiatry
Authors' code: bcbio/bcbio-nextgen (MIT)
Status: code verified, 318 files readable, 4 matches
[90] Code ↔ Paper doi:10.1038/s41467-026-79114-3 [paper, repository]
Author Correction: Solving the Hubbard model with neural quantum states.
Journal: Nature communications
Authors' code: codeocean:8740417 (no license), bytedance/laqx (MIT)
Status: code verified, 53 files readable
[91] Code ↔ Paper doi:10.1126/sciadv.aee1955 [paper, repository]
Predicting upcoming visual features during eye movements yields scene representations aligned with human visual cortex.
Journal: Science advances
Authors' code: KietzmannLab/GPN (MIT)
Status: code verified, 15 files readable, 18 matches
[92] Code ↔ Paper doi:10.1126/sciadv.aeh3885 [paper, repository]
Voice patches in the marmoset auditory cortex revealed by multimodal optical imaging.
Journal: Science advances
Authors' code: x-song-x/XINTRINSIC (no license), OSF 6hb2w (no license)
Status: code verified, 11 files readable
[93] Code ↔ Paper doi:10.1126/sciadv.aeh5819 [paper, repository]
Neurophysiological dynamics related to perception, action, and language in schizophrenia.
Journal: Science advances
Authors' code: srikash/presurfer (no license), Zenodo 21401588 (CC-BY-4.0)
Status: code verified, 6 files readable, 1 match
[94] Code ↔ Paper doi:10.1126/sciadv.aei5171 [paper, repository]
Differential sex-dependent responses of circulating steroid hormones and cortical gene expression in a traumatic brain injury model.
Journal: Science advances
Authors' code: Zenodo 21726001 (Apache-2.0), plaisier-lab/sex_specific_tbi (Apache-2.0)
Status: code verified, 30 files readable, 8 matches
[95] Code ↔ Paper doi:10.1523/jneurosci.0398-26.2026 [paper, repository]
Molecular Disambiguation of Heart Rate Control by the Nucleus Ambiguus.
Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience
Authors' code: Zenodo 22864368 (CC-BY-4.0)
Status: code verified, 5 files readable, 5 matches
[96] Code ↔ Paper doi:10.1523/jneurosci.2058-25.2026 [paper, repository]
The Influence of Contralesional Brain Age Gradients on Chronic Stroke Aphasia Severity and Treatment Response.
Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience
Authors' code: NickRiccardi/brain_age_factors (GPL-3.0)
Status: code verified, 3 files readable
[97] Code ↔ Paper doi:10.7554/elife.109678 [paper, repository]
Strong mnemonic prediction errors increase cognitive control, attention, and arousal.
Journal: eLife
Authors' code: alicexue/mpe-attention-cog-ctrl (GPL-3.0)
Status: code verified, 22 files readable, 3 matches
[98] Code ↔ Paper doi:10.7554/elife.109757 [paper, repository]
A mechanistic theory of planning in prefrontal cortex.
Journal: eLife
Authors' code: KrisJensen/pysta (MIT)
Status: code verified, 50 files readable, 12 matches

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