Brain Bases for Navigating Acoustic Features.
The 3 matches · 1 of them tie a paragraph to a whole file, not to given lines: a weak match, whose lines are not tinted
- [1] § Materials and Methods › MRI Data Acquisition ↔ +gadgetron/+types/+xml/serialize.m, lines 131–189 · score 0.73 · flip angle, acceleration factor, TR, TE, double, sequence
- [2] § Materials and Methods › MRI Data Acquisition ↔ +gadgetron/+types/+xml/deserialize.m, lines 185–206 · score 0.66 · flip angle, TR, bandwidth, sequence, weighted, echo
- [3] § Materials and Methods › Multivariate fMRI Analyses ↔ +gadgetron/+FIL/+utils/morse_estimate_sensitivities.m, the whole file · a weak match · score 0.53 · diagonal, variances, smoothed, weights, matrices, voxel
Paper
Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC
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The authors' code
MATLAB · 314 lines · 13 KB · BSD-3-Clause · 1 match
- function [xml_doc] = serialize( header)
- %SERIALIZE Summary of this function goes here
- % Detailed explanation goes here
- docNode = com.mathworks.xml.XMLUtils.createDocument('ismrmrdHeader');
- docRootNode = docNode.getDocumentElement;
- docRootNode.setAttribute('xmlns','http://www.ismrm.org/ISMRMRD');
- docRootNode.setAttribute('xmlns:xsi','http://www.w3.org/2001/XMLSchema-instance');
- docRootNode.setAttribute('xmlns:xs','http://www.w3.org/2001/XMLSchema');
- docRootNode.setAttribute('xsi:schemaLocation','http://www.ismrm.org/ISMRMRD ismrmrd.xsd');
- append_optional(docNode,docRootNode,header,'version',@int2str)
- if isfield(header,'subjectInformation')
- subjectInformation = header.subjectInformation;
- subjectInformationNode = docNode.createElement('subjectInformation');
- append_optional(docNode,subjectInformationNode,subjectInformation,'patientName');
- append_optional(docNode,subjectInformationNode,subjectInformation,'patientWeight_kg',@num2str);
- append_optional(docNode,subjectInformationNode,subjectInformation,'patientID');
- append_optional(docNode,subjectInformationNode,subjectInformation,'patientBirthdate');
- append_optional(docNode,subjectInformationNode,subjectInformation,'patientGender');
- docRootNode.appendChild(subjectInformationNode);
- end
- if isfield(header,'studyInformation')
- studyInformation = header.studyInformation;
- studyInformationNode = docNode.createElement('studyInformation');
- append_optional(docNode,studyInformationNode,studyInformation,'studyDate');
- append_optional(docNode,studyInformationNode,studyInformation,'studyTime');
- append_optional(docNode,studyInformationNode,studyInformation,'studyID');
- append_optional(docNode,studyInformationNode,studyInformation,'accessionNumber',@int2str);
- append_optional(docNode,studyInformationNode,studyInformation,'referringPhysicianName');
- append_optional(docNode,studyInformationNode,studyInformation,'studyDescription');
- append_optional(docNode,studyInformationNode,studyInformation,'studyInstanceUID');
- docRootNode.appendChild(studyInformationNode);
- end
- if isfield(header,'measurementInformation')
- measurementInformation = header.measurementInformation;
- measurementInformationNode = docNode.createElement('measurementInformation');
- append_optional(docNode,measurementInformationNode,measurementInformation,'measurementID');
- append_optional(docNode,measurementInformationNode,measurementInformation,'seriesDate');
- append_optional(docNode,measurementInformationNode,measurementInformation,'seriesTime');
- append_node(docNode,measurementInformationNode,measurementInformation,'patientPosition');
- append_optional(docNode,measurementInformationNode,measurementInformation,'initialSeriesNumber',@int2str);
- append_optional(docNode,measurementInformationNode,measurementInformation,'protocolName');
- append_optional(docNode,measurementInformationNode,measurementInformation,'seriesDescription');
- if isfield(measurementInformation, 'measurementDependency')
- measurementDependency = measurementInformation.measurementDependency;
- for dep = measurementDependency(:)
- node = docNode.createElement('measurementDependency');
- append_node(docNode,node,dep,'dependencyType');
- append_node(docNode,node,dep,'measurementID');
- measurementInformationNode.appendChild(node)
- end
- end
- append_optional(docNode,measurementInformationNode,measurementInformation,'seriesInstanceUIDRoot');
- append_optional(docNode,measurementInformationNode,measurementInformation,'frameOfReferenceUID');
- if isfield(measurementInformation, 'referencedImageSequence')
- referencedImageSequence = measurementInformation.referencedImageSequence;
- referencedImageSequenceNode = docNode.createElement('referencedImageSequence');
- for ref = referencedImageSequence(:)
- append_node(docNode,referencedImageSequenceNode,ref,'referencedSOPInstanceUID');
- end
- end
- docRootNode.appendChild(measurementInformationNode);
- end
- if isfield(header,'acquisitionSystemInformation')
- acquisitionSystemInformation = header.acquisitionSystemInformation;
- acquisitionSystemInformationNode = docNode.createElement('acquisitionSystemInformation');
- append_optional(docNode,acquisitionSystemInformationNode,acquisitionSystemInformation,'systemVendor');
- append_optional(docNode,acquisitionSystemInformationNode,acquisitionSystemInformation,'systemModel');
- append_optional(docNode,acquisitionSystemInformationNode,acquisitionSystemInformation,'systemFieldStrength_T',@num2str);
- append_optional(docNode,acquisitionSystemInformationNode,acquisitionSystemInformation,'relativeReceiverNoiseBandwidth',@num2str);
- append_optional(docNode,acquisitionSystemInformationNode,acquisitionSystemInformation,'receiverChannels',@int2str);
- if isfield(acquisitionSystemInformation, 'coilLabel')
- coilLabel = acquisitionSystemInformation.coilLabel;
- for coil = 1:length(coilLabel)
- coilLabelNode = docNode.createElement('coilLabel');
- append_node(docNode,coilLabelNode,coilLabel(coil),'coilNumber',@num2str);
- append_node(docNode,coilLabelNode,coilLabel(coil),'coilName');
- acquisitionSystemInformationNode.appendChild(coilLabelNode);
- end
- end
- append_optional(docNode,acquisitionSystemInformationNode,acquisitionSystemInformation,'institutionName');
- append_optional(docNode,acquisitionSystemInformationNode,acquisitionSystemInformation,'stationName',@num2str);
- docRootNode.appendChild(acquisitionSystemInformationNode);
- end
- experimentalConditions = header.experimentalConditions;
- experimentalConditionsNode = docNode.createElement('experimentalConditions');
- append_node(docNode,experimentalConditionsNode,experimentalConditions,'H1resonanceFrequency_Hz',@int2str);
- docRootNode.appendChild(experimentalConditionsNode);
- if ~isfield(header,'encoding')
- error('Illegal header: missing encoding section');
- end
- for enc = header.encoding(:)
- node = docNode.createElement('encoding');
- append_encoding_space(docNode,node,'encodedSpace',enc.encodedSpace);
- append_encoding_space(docNode,node,'reconSpace',enc.reconSpace);
- n2 = docNode.createElement('encodingLimits');
- append_encoding_limits(docNode,n2,'kspace_encoding_step_0',enc.encodingLimits);
- append_encoding_limits(docNode,n2,'kspace_encoding_step_1',enc.encodingLimits);
- append_encoding_limits(docNode,n2,'kspace_encoding_step_2',enc.encodingLimits);
- append_encoding_limits(docNode,n2,'average',enc.encodingLimits);
- append_encoding_limits(docNode,n2,'slice',enc.encodingLimits);
- append_encoding_limits(docNode,n2,'contrast',enc.encodingLimits);
- append_encoding_limits(docNode,n2,'phase',enc.encodingLimits);
- append_encoding_limits(docNode,n2,'repetition',enc.encodingLimits);
- append_encoding_limits(docNode,n2,'set',enc.encodingLimits);
- append_encoding_limits(docNode,n2,'segment',enc.encodingLimits);
- node.appendChild(n2);
- append_node(docNode,node,enc,'trajectory');
- node.appendChild(n2);
- % sometimes the encoding has the fields, but they are empty
- if isfield(enc,'trajectoryDescription')
- if ~isempty(fieldnames(enc.trajectoryDescription))
- n2 = docNode.createElement('trajectoryDescription');
- append_node(docNode,n2,enc.trajectoryDescription,'identifier');
- append_user_parameter(docNode,n2,enc.trajectoryDescription,'userParameterLong',@int2str);
- append_user_parameter(docNode,n2,enc.trajectoryDescription,'userParameterDouble',@num2str);
- append_optional(docNode,n2,enc.trajectoryDescription,'comment');
- node.appendChild(n2);
- end
- end
- if isfield(enc,'parallelImaging')
- if ~isempty(fieldnames(enc.parallelImaging))
- n2 = docNode.createElement('parallelImaging');
- n3 = docNode.createElement('accelerationFactor');
- parallelImaging = enc.parallelImaging;
- append_node(docNode,n3,parallelImaging.accelerationFactor,'kspace_encoding_step_1',@int2str);
- append_node(docNode,n3,parallelImaging.accelerationFactor,'kspace_encoding_step_2',@int2str);
- n2.appendChild(n3);
- append_optional(docNode,n2,parallelImaging,'calibrationMode');
- append_optional(docNode,n2,parallelImaging,'interleavingDimension',@int2str);
- node.appendChild(n2);
- end
- end
- if isfield(enc,'echoTrainLength')
- if ~isempty(enc.echoTrainLength)
- append_optional(docNode,node,enc,'echoTrainLength',@int2str);
- end
- end
- docRootNode.appendChild(node);
- end
- if isfield(header,'sequenceParameters')
- n1 = docNode.createElement('sequenceParameters');
- sequenceParameters = header.sequenceParameters;
- append_optional(docNode,n1,sequenceParameters,'TR',@num2str);
- append_optional(docNode,n1,sequenceParameters,'TE',@num2str);
- append_optional(docNode,n1,sequenceParameters,'TI',@num2str);
- append_optional(docNode,n1,sequenceParameters,'flipAngle_deg',@num2str);
- append_optional(docNode,n1,sequenceParameters,'sequence_type');
- append_optional(docNode,n1,sequenceParameters,'echo_spacing',@num2str);
- docRootNode.appendChild(n1);
- end
- if isfield(header,'userParameters')
- n1 = docNode.createElement('userParameters');
- userParameters = header.userParameters;
- if isfield(userParameters,'userParameterLong')
- append_user_parameter(docNode,n1,userParameters,'userParameterLong',@int2str);
- end
- if isfield(userParameters,'userParameterDouble')
- append_user_parameter(docNode,n1,userParameters,'userParameterDouble',@num2str);
- end
- if isfield(userParameters,'userParameterString')
- append_user_parameter(docNode,n1,userParameters,'userParameterString');
- end
- if isfield(userParameters,'userParameterBase64')
- append_user_parameter(docNode,n1,userParameters,'userParameterBase64');
- end
- docRootNode.appendChild(n1);
- end
- if isfield(header,'waveformInformation')
- n1 = docNode.createElement('waveformInformation')
- waveformInformation = header.waveformInformation;
- append_node(docNode,n1,waveformInformation,'waveformName');
- append_node(docNode,n1,waveformInformation,'waveformType');
- if isfield(waveformInformation,'userParameters')
- n2 = n1.createElement('userParameters')
- userParameters = waveformInformation.userParameters;
- if isfield(userParameters,'userParameterLong')
- append_user_parameter(docNode,n2,userParameters,'userParameterLong',@int2str);
- end
- if isfield(userParameters,'userParameterDouble')
- append_user_parameter(docNode,n2,userParameters,'userParameterDouble',@num2str);
- end
- if isfield(userParameters,'userParameterString')
- append_user_parameter(docNode,n2,userParameters,'userParameterString');
- end
- if isfield(userParameters,'userParameterBase64')
- append_user_parameter(docNode,n2,userParameters,'userParameterBase64');
- end
- end
- end
- xml_doc = xmlwrite(docNode);
- end
- function append_user_parameter(docNode,subNode,values,name,tostr)
- for v = 1:length(values.(name))
- n2 = docNode.createElement(name);
- append_node(docNode,n2,values.(name)(v),'name');
- if nargin > 4
- append_node(docNode,n2,values.(name)(v),'value',tostr);
- else
- append_node(docNode,n2,values.(name)(v),'value');
- end
- subNode.appendChild(n2);
- end
- end
- function append_encoding_limits(docNode,subNode,name,limit)
- if isfield(limit,name)
- n2 = docNode.createElement(name);
- append_node(docNode,n2,limit.(name),'minimum',@int2str);
- append_node(docNode,n2,limit.(name),'maximum',@int2str);
- append_node(docNode,n2,limit.(name),'center',@int2str);
- subNode.appendChild(n2);
- end
- end
- function append_encoding_space(docNode,subnode,name,encodedSpace)
- n2 = docNode.createElement(name);
- n3 = docNode.createElement('matrixSize');
- append_node(docNode,n3,encodedSpace.matrixSize,'x',@int2str);
- append_node(docNode,n3,encodedSpace.matrixSize,'y',@int2str);
- append_node(docNode,n3,encodedSpace.matrixSize,'z',@int2str);
- n2.appendChild(n3);
- n3 = docNode.createElement('fieldOfView_mm');
- append_node(docNode,n3,encodedSpace.fieldOfView_mm,'x',@num2str);
- append_node(docNode,n3,encodedSpace.fieldOfView_mm,'y',@num2str);
- append_node(docNode,n3,encodedSpace.fieldOfView_mm,'z',@num2str);
- n2.appendChild(n3);
- subnode.appendChild(n2);
- end
- function append_optional(docNode,subnode,subheader,name,tostr)
- if isfield(subheader,name)
- if nargin > 4
- append_node(docNode,subnode,subheader,name,tostr);
- else
- append_node(docNode,subnode,subheader,name);
- end
- end
- end
- function append_node(docNode,subnode,subheader,name,tostr)
- if ischar(subheader.(name))
- n1 = docNode.createElement(name);
- n1.appendChild...
- (docNode.createTextNode(subheader.(name)));
- subnode.appendChild(n1);
- else
- val = subheader.(name)(:);
- for thisval = 1:length(val)
- n1 = docNode.createElement(name);
- n1.appendChild...
- (docNode.createTextNode(tostr(val(thisval))));
- subnode.appendChild(n1);
- end
- end
- end
serialize.m at commit 09c53ca, under BSD-3-Clause · at the source
Overview
- UCL Ear Institute University College London London UK
- Translational and Clinical Research Institute, Faculty of Medical Sciences Newcastle University Newcastle upon Tyne UK
- Department of Radiology The University of Iowa Iowa City Iowa USA
- Department of Neurosurgery The University of Iowa Iowa City Iowa USA
- Department of Imaging Neuroscience University College London London UK
- Biosciences Institute, Faculty of Medical Sciences Newcastle University Newcastle upon Tyne UK
Abstract
Whether physical navigation shares neural substrates with mental travel in other behaviourally relevant domains is debated. With respect to sound, pure‐tone working memory in humans elicits hippocampal as well as auditory cortical and inferior frontal activity, and rodent work suggests that hippocampal cells that usually track an animal's physical location can also map to tone frequency when task‐relevant. We generated a sound dimension based on the density of random‐frequency tones in a stack, resulting in a percept ranging from low‐ (‘beepy’) to high‐density (‘noisy’). We established that unlike tone frequency, which listeners automatically associate with vertical position, this density dimension elicited no consistent spatial mapping. During functional magnetic resonance imaging, human participants held in mind the density of a series of tone stacks and, after a short maintenance period, adjusted further stacks to match the target (‘navigation’). Density of the currently heard sound was represented most strongly in bilateral non‐primary auditory cortex, specifically bilateral planum polare, whereas density of the maintained target was represented in right anterior hippocampus and left inferior temporal gyrus. Encoding and maintenance activity in bilateral hippocampus, inferior frontal gyrus, planum polare and posterior cingulate was positively associated with subsequent navigation success. Bilateral inferior frontal gyrus and hippocampus were among regions with elevated activity during adjustment, compared to a parity‐judgement condition with closely matched acoustics and motor demands. Bilateral orbitofrontal cortex was more active when navigation was toward a target density than when participants adjusted density in a control condition with no particular target. We find that self‐initiated travel along a non‐spatial auditory dimension engages a brain system overlapping with that supporting physical navigation.
Reproduced under the paper's license (CC BY), from the paper cited above.
Repository
Its files are read in the Code ↔ Paper reader above, with 3 matches between paragraphs and lines of code.
fil-physics/gadgetron-matlab
09c53cade9012d948350b75e7013bf259b782244, 9 September 2026Availability: 1 check, the latest on 30 September 2026: the link answers
- 30 September 2026: the link answers
122 files
- +gadgetron/
+FIL/ , MATLAB, 90 lines+steps/ BSS_classic_or_GLM_B1map .m - +gadgetron/
+FIL/ , MATLAB, 20 lines+steps/ ESPIRiT_calc_sens.m - +gadgetron/
+FIL/ , MATLAB, 28 lines+steps/ ESPIRiT_unfold.m - +gadgetron/
+FIL/ , MATLAB, 283 lines+steps/ accumulate_volume.m - +gadgetron/
+FIL/ , MATLAB, 89 lines+steps/ cosine_filter.m - +gadgetron/
+FIL/ , MATLAB, 153 lines+steps/ create_ismrmrd_3Dvol_and _send.m - +gadgetron/
+FIL/ , MATLAB, 70 lines+steps/ morse_calc_sens.m - +gadgetron/
+FIL/ , MATLAB, 90 lines+steps/ morse_unfold.m - +gadgetron/
+FIL/ , MATLAB, 114 lines+steps/ morse_unfold_unaccelerat ed.m - +gadgetron/
+FIL/ , MATLAB, 59 lines+steps/ tukey_filter.m - +gadgetron/
+FIL/ , MATLAB, 35 lines+steps/ write_to_disk.m - +gadgetron/
+FIL/ , MATLAB, 42 lines+utils/ ComputeBSSB1Map.m - +gadgetron/
+FIL/ , MATLAB, 111 lines+utils/ ESPIRiT.m - +gadgetron/
+FIL/ , MATLAB, 13 lines+utils/ ESPIRiT_calc_sens.m - +gadgetron/
+FIL/ , MATLAB, 91 lines+utils/ EstimateParameters_GLM_B SS.m - +gadgetron/
+FIL/ , MATLAB, 85 lines+utils/ ROMEO.m - +gadgetron/
+FIL/ , MATLAB, 23 lines+utils/ cifftn.m - +gadgetron/
+FIL/ , MATLAB, 44 lines+utils/ get_PPI_params.m - +gadgetron/
+FIL/ , MATLAB, 75 lines+utils/ morse_calc_pinv.m - +gadgetron/
+FIL/ , MATLAB, 103 lines, 1 match+utils/ morse_estimate_sensitivi ties.m - +gadgetron/
+FIL/ , MATLAB, 53 lines+utils/ morse_pseudoinvert_sensi tivities.m - +gadgetron/
+FIL/ , MATLAB, 41 lines+utils/ mysmooth.m - +gadgetron/
+FIL/ , MATLAB, 39 lines+utils/ readcfl.m - +gadgetron/
+FIL/ , MATLAB, 108 lines+utils/ vrc_phase_correction.m - +gadgetron/
+FIL/ , MATLAB, 41 lines+utils/ writecfl.m - +gadgetron/
+examples/ , MATLAB, 39 lines+steps/ accumulate_slice.m - +gadgetron/
+examples/ , MATLAB, 9 lines+steps/ basic_reconstruction.m - +gadgetron/
+examples/ , MATLAB, 10 lines+steps/ combine_channels.m - +gadgetron/
+examples/ , MATLAB, 14 lines+steps/ create_ismrmrd_image.m - +gadgetron/
+examples/ , MATLAB, 27 lines+steps/ create_slice_from_bucket .m - +gadgetron/
+examples/ , MATLAB, 13 lines+steps/ create_slice_from_recon_ data.m - +gadgetron/
+examples/ , MATLAB, 37 lines+steps/ noise_adjust.m - +gadgetron/
+examples/ , MATLAB, 21 lines+steps/ remove_oversampling.m - +gadgetron/
+examples/ , MATLAB, 9 lines+steps/ send_image_to_client.m - +gadgetron/
+examples/ , MATLAB, 20 lines+steps/ set_image_index.m - +gadgetron/
+examples/ , MATLAB, 13 linesbucket_recon.m - +gadgetron/
+examples/ , MATLAB, 12 linesbuffer_recon.m - +gadgetron/
+examples/ , MATLAB, 5 linespassthrough.m - +gadgetron/
+examples/ , MATLAB, 18 linessimple_recon.m - +gadgetron/
+examples/ , MATLAB, 37 linestiny_recon.m - +gadgetron/
+external/ , MATLAB, 3 lines+readers/ as_interleaved_complex.m - +gadgetron/
+external/ , MATLAB, 42 lines+readers/ decode_acquisition_heade rs.m - +gadgetron/
+external/ , MATLAB, 42 lines+readers/ decode_image_headers.m - +gadgetron/
+external/ , MATLAB, 19 lines+readers/ decode_waveform_headers. m - +gadgetron/
+external/ , MATLAB, 25 lines+readers/ read_acquisition.m - +gadgetron/
+external/ , MATLAB, 23 lines+readers/ read_array.m - +gadgetron/
+external/ , MATLAB, 115 lines+readers/ read_bucket.m - +gadgetron/
+external/ , MATLAB, 3 lines+readers/ read_config.m - +gadgetron/
+external/ , MATLAB, 15 lines+readers/ read_config_file.m - +gadgetron/
+external/ , MATLAB, 3 lines+readers/ read_header.m - +gadgetron/
+external/ , MATLAB, 5 lines+readers/ read_header_array.m - +gadgetron/
+external/ , MATLAB, 50 lines+readers/ read_image.m - +gadgetron/
+external/ , MATLAB, 43 lines+readers/ read_image_array.m - +gadgetron/
+external/ , MATLAB, 3 lines+readers/ read_message_id.m - +gadgetron/
+external/ , MATLAB, 9 lines+readers/ read_optional.m - +gadgetron/
+external/ , MATLAB, 48 lines+readers/ read_recon_data.m - +gadgetron/
+external/ , MATLAB, 60 lines+readers/ read_recon_data_and_sepa rated_density_weights.m - +gadgetron/
+external/ , MATLAB, 4 lines+readers/ read_string.m - +gadgetron/
+external/ , MATLAB, 4 lines+readers/ read_vector.m - +gadgetron/
+external/ , MATLAB, 17 lines+readers/ read_waveform.m - +gadgetron/
+external/ , MATLAB, 71 lines+writers/ +streams/ ByteStream.m - +gadgetron/
+external/ , MATLAB, 41 lines+writers/ +streams/ Segment.m - +gadgetron/
+external/ , MATLAB, 57 lines+writers/ encode_acquisition_heade rs.m - +gadgetron/
+external/ , MATLAB, 42 lines+writers/ encode_image_headers.m - +gadgetron/
+external/ , MATLAB, 7 lines+writers/ encode_waveform_headers. m - +gadgetron/
+external/ , MATLAB, 64 lines+writers/ write_acquisition.m - +gadgetron/
+external/ , MATLAB, 26 lines+writers/ write_array.m - +gadgetron/
+external/ , MATLAB, 5 lines+writers/ write_header_array.m - +gadgetron/
+external/ , MATLAB, 61 lines+writers/ write_image.m - +gadgetron/
+external/ , MATLAB, 61 lines+writers/ write_image_array.m - +gadgetron/
+external/ , MATLAB, 9 lines+writers/ write_optional.m - +gadgetron/
+external/ , MATLAB, 8 lines+writers/ write_recon_data.m - +gadgetron/
+external/ , MATLAB, 10 lines+writers/ write_string.m - +gadgetron/
+external/ , MATLAB, 6 lines+writers/ write_vector.m - +gadgetron/
+external/ , MATLAB, 28 lines+writers/ write_waveform.m - +gadgetron/
+external/ , MATLAB, 227 linesConnection.m - +gadgetron/
+external/ , MATLAB, 28 lineslisten.m - +gadgetron/
+external/ , MATLAB, 25 linesmain.m - +gadgetron/
+external/ , MATLAB, 4 linestest_available.m - +gadgetron/
+lib/ , MATLAB, 3 lines+fft/ cfft.m - +gadgetron/
+lib/ , MATLAB, 3 lines+fft/ cfftn.m - +gadgetron/
+lib/ , MATLAB, 3 lines+fft/ cifft.m - +gadgetron/
+lib/ , MATLAB, 3 lines+fft/ cifftn.m - +gadgetron/
+lib/ , MATLAB, 64 linesLinkedList.m - +gadgetron/
+lib/ , MATLAB, 19 linesNil.m - +gadgetron/
+lib/ , MATLAB, 5 lineslist.m - +gadgetron/
+types/ , MATLAB, 10 lines+lazy/ AcquisitionStats.m - +gadgetron/
+types/ , MATLAB, 261 lines, 1 match+xml/ deserialize.m - +gadgetron/
+types/ , MATLAB, 314 lines, 1 match+xml/ serialize.m - +gadgetron/
+types/ , MATLAB, 73 linesAcquisition.m - +gadgetron/
+types/ , MATLAB, 30 linesBucket.m - +gadgetron/
+types/ , MATLAB, 56 linesImage.m - +gadgetron/
+types/ , MATLAB, 20 linesImageArray.m - +gadgetron/
+types/ , MATLAB, 94 linesMeta.m - +gadgetron/
+types/ , MATLAB, 12 linesReconData.m - +gadgetron/
+types/ , MATLAB, 25 linesWaveform.m - +gadgetron/
+types/ , MATLAB, 64 linesprivate/ create_image_header.m - +gadgetron/
Constants.m , MATLAB, 26 lines - +gadgetron/
consume.m , MATLAB, 10 lines - +socket/
Socket.m , MATLAB, 48 lines - +socket/
connect.m , MATLAB, 4 lines - +socket/
listen.m , MATLAB, 29 lines - FIL-recon/
ReconBSS.m , MATLAB, 49 lines - FIL-recon/
ReconMPM.m , MATLAB, 110 lines - FIL-recon/
docker-containers/ , Shell, 49 linescontainer-files/ create_container.sh - FIL-recon/
docker-containers/ , Shell, 79 linescontainer-files/ integration-tests/ create_ref_data_3T.sh - FIL-recon/
docker-containers/ , Shell, 87 linescontainer-files/ integration-tests/ create_ref_data_7T.sh - FIL-recon/
docker-containers/ , Shell, 35 linescontainer-files/ integration-tests/ run_tests_outside_contai ner.sh - FIL-recon/
docker-containers/ , Shell, 41 linescontainer-files/ setup_container.sh - FIL-recon/
docker-containers/ , Shell, 48 linescontainer-files/ utils/ reco_offline_B1_maps.sh - FIL-recon/
docker-containers/ , Shell, 5 linescontainer-files/ utils/ remove_container.sh - FIL-recon/
docker-containers/ , Shell, 18 linescontainer-files/ utils/ run_gadgetron_in_contain er.sh - FIL-recon/
docker-containers/ , Shell, 5 linescontainer-files/ utils/ shell_in_container.sh - FIL-recon/
docker-containers/ , Shell, 4 linescontainer-files/ utils/ version.sh - FIL-recon/
docker-containers/ , Shell, 72 linesimage-files/ build_image.sh - FIL-recon/
h5_to_nifti.m , MATLAB, 83 lines - FIL-recon/
integration-tests/ , Shell, 25 linesrun_tests_in_container.s h - FIL-recon/
run_gadgetron.sh , Shell, 5 lines - java/
create_jar.sh , Shell, 8 lines - java/
gadgetron/ , Java, 33 linesexternal/ SocketWrapper.java - LICENSE, License, 29 lines
- README.txt, Text, 1 line
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 120 scripts, each with its path and the digest of its content;
- 3 matches between paragraphs of the paper and lines of the code (method lexical-v1);
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
Datasets cited
- openneuro:ds006211, at OpenNeuro; found in “Data Availability Statement”
Data Availability Statement
The data that support the findings of this study are openly available in BIDS format at OpenNeuro at https://
Reproduced under the paper's license (CC BY), from the paper cited above.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 1, 30 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 9 authors, 6 keywords, 13 MeSH terms, 2 funders, 60 references.
Cite
This paper
Billig, A. J., Sedley, W., Gander, P. E., Kumar, S., Lad, M., Chait, M., Mohammadi, Y., Berger, J. I., & Griffiths, T. D. (2026). Brain Bases for Navigating Acoustic Features. Human brain mapping, 47(4), e70492. https://
BibTeX
@article{billig2026brain
author = {Billig, Alexander J. and Sedley, William and Gander, Phillip E. and Kumar, Sukhbinder and Lad, Meher and Chait, Maria and Mohammadi, Yousef and Berger, Joel I. and Griffiths, Timothy D.},
title = {{Brain Bases for Navigating Acoustic Features}},
journal = {Human brain mapping},
year = {2026},
month = mar,
volume = {47},
number = {4},
pages = {e70492},
publisher = {Wiley},
issn = {1065-9471},
doi = {10.1002/
url = {https://
pmid = {41797407},
pmcid = {PMC12968464}
}
RIS
TY - JOUR
AU - Billig, Alexander J.
AU - Sedley, William
AU - Gander, Phillip E.
AU - Kumar, Sukhbinder
AU - Lad, Meher
AU - Chait, Maria
AU - Mohammadi, Yousef
AU - Berger, Joel I.
AU - Griffiths, Timothy D.
TI - Brain Bases for Navigating Acoustic Features
T2 - Human brain mapping
J2 - Hum Brain Mapp
PY - 2026
DA - 2026/
VL - 47
IS - 4
SP - e70492
SN - 1065-9471
PB - Wiley
DO - 10.1002/
UR - https://
LA - en
ER -
CSL-JSON
{
"id": "10.1002/
"type": "article-journal",
"title": "Brain Bases for Navigating Acoustic Features",
"container-title": "Human brain mapping",
"author": [
{
"family": "Billig",
"given": "Alexander J."
},
{
"family": "Sedley",
"given": "William"
},
{
"family": "Gander",
"given": "Phillip E."
},
{
"family": "Kumar",
"given": "Sukhbinder"
},
{
"family": "Lad",
"given": "Meher"
},
{
"family": "Chait",
"given": "Maria"
},
{
"family": "Mohammadi",
"given": "Yousef"
},
{
"family": "Berger",
"given": "Joel I."
},
{
"family": "Griffiths",
"given": "Timothy D."
}
],
"container-title-short":
"volume": "47",
"issue": "4",
"page": "e70492",
"DOI": "10.1002/
"PMID": "41797407",
"PMCID": "PMC12968464",
"ISSN": "1065-9471",
"publisher": "Wiley",
"URL": "https://
"language": "en",
"issued": {
"date-parts": [
[
2026,
3,
1
]
]
}
}
The tracing map gets a citation of its own once an author has validated it and it has a DOI.
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Contribute
The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.
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Correct its record
Say what each link of this record is, remove the ones that are not the paper's, add the ones that are missing. The correction becomes a new version of the record, in its Versions section.
Validate its tracing map
You validate the map as this page shows it: 1 repository of the authors' code, each at its verified commit and with its license, 120 scripts, and 3 matches between paragraphs and code (see the Code and Map sections). It then receives a DOI on Zenodo, with you (your ORCID iD) and OSCR as its creators; the code itself is not deposited.
The map's fingerprint: sha256:e9706fbe2238d083…
Add the badge to its README
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Markdown
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Discussion, reproductions, activity
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