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Brain network localization of anhedonia.

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Paper

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The authors' code

MATLAB · 139 lines · 8.3 KB · no license

  1. %% µÚÒ»²½ ½«spm12¡¢dpabiºÍROI_ball_gen.mº¯Êý£¨ÓÃÀ´»­Ð¡Çò£©¼ÓÈ뵽·¾¶ÖУ¬Çå³ýËùÓл·¾³±äÁ¿
  2. % spm12¡¢dpabiºÍROI_ball_gen.mº¯Êý×Ô¼ºÌí¼Ó
  3. clear,clc
  5. %% µÚ¶þ²½ ¶Áȡÿ¸ö¶ÀÁ¢Ñо¿µÄ»ù±¾ÐÅÏ¢¼°Ì§Í·
  6. %Ò»°ãĬÈÏÎÒÃÇÏÂÔØÁËËùÓÐÄÉÈëÑо¿µÄPDFÎÄÏ×£¬Ã¿ÆªÎÄÏ×½¨Òé½á¹¹Îª P + ±àºÅ + ×÷Õß + ·¢±íÄê·Ý£¬ÀýÈçµÚһƪÎÄÏ×ΪP01Li2017
  7. %Èç¹ûûÓÐÏÂÔØÈ«ËùÓеÄPDFÎÄÏ×£¬È±Ê§µÄÎÄÏ׿ÉÒÔ×Ô¼ºÊÖ¶¯´´½¨Ò»¸öËæÒâµÄPDFÎļþ£¬ÎÒÃÇÕâÀïÖ»ÊÇÐèÒª¶Áȡÿ¸öÎÄÏ׵Ļù±¾ÐÅÏ¢¼°Ì§Í·
  9. path = 'C:\Users\HP\Desktop\FCNM';%·¾¶ÐèÒªÐ޸ģ¬ÕâÀïΪÎÒÃÇÕâ¸öÏîÄ¿µÄËùÓÐÎļþ´æ·ÅµÄÖ÷Îļþ¼Ð·¾¶£¬ÀýÈç¡®¼²²¡_Network_Mapping¡¯¼²²¡ÍøÂçÓ³É䣬°´ÕÕ×Ô¼ºµçÄÔÉϵÄλÖýøÐÐÐÞ¸Ä
  10. mkdir([path,filesep,'Articles_Included']);%н¨Articles_IncludedÎļþ¼Ð£¬½«ÄÉÈëµÄËùÓÐÑо¿µÄPDFÎļþ·ÅÔÚÀïÃæ
  11. Articles_path = [path,filesep,'Articles_Included'];
  12. File = dir(fullfile(Articles_path,'*.pdf'));%¶ÁÈ¡Articles_IncludedËùÓеÄPDFÎļþ£¬¼´ËùÓÐÑо¿£¬ºóÐø£¨end-4£©¼´ÎªµÃµ½³ý'.pdf'µÄÎļþÃû
  13. Filename ={File.name};
  14. [~,col]=size(Filename);
  15. %% µÚÈý²½ Ç°Ò»²½¶ÁÈ¡ÐÅÏ¢ºó½¨Á¢ËùÓÐÎÄÕÂ×ø±êËùÐèÒªµÄexcel±í¸ñ£¬Ö®ºóÊÖ¶¯½«ËùÓÐÎÄÕ¶ÔÓ¦×ø±êÌîÈë¶ÔÓ¦±í¸ñ
  17. mkdir([path,filesep,'Articles_Included_Excel']);%½¨Á¢Articles_Included_ExcelµÄÐÂÎļþ¼Ð
  18. cd([path,filesep,'Articles_Included_Excel']);%½øÈë¸ÃÎļþ¼Ð
  20. for i = 1:col%ÕâÀïÊÇ°Ñÿ¸öÑо¿½¨Á¢ÁËÒ»¸öexcel±í¸ñ£¬ÐèÒªÖ®ºóÊÖ¶¯½«×ø±êÌîÈëµ½excelºó²¢ÇÒ±£´æ£¬ÔÚexcelÎĵµµÄDÁÐÈç¹ûÓÖ¶à¸öROI½á¹û¿ÉÒÔ½«±í¸ñÏÂÀ´×Ô¶¯Ìî³ä
  21. filename=char(Filename(i));
  22. xlswrite([filename(1:end-4),'.xlsx'],cellstr([filename(1:end-4),'_ROI01']),'sheet1','D1')
  23. end
  25. %% µÚËIJ½ ¸ù¾ÝÿƪÑо¿µÄROIÉú³ÉСÇò£¬²¢ÇÒ½«Í¬Ò»¸öÑо¿ÖеÄСÇòºÏ²¢
  27. [row,col]=size(Filename);
  28. for i = 1:col
  29. filename=char(Filename(i));
  30. radius_Seeds_Excel = [path,'\4mm_Seeds_Excel\'];%ÕâÀï×¢ÒâÒ»ÏÂÀûÓò»Í¬°ë¾¶Éú³ÉСÇò¼ÇµÃÐ޸İ뾶´óС£¬ÕâÀïÊÇ4mm
  31. mkdir([ radius_Seeds_Excel, filename(1:end-4)])%´´½¨Ã¿Ò»ÆªÎÄÕÂËùÐèÒªµÄÎļþ¼Ð
  32. cd ([radius_Seeds_Excel, filename(1:end-4)]);
  33. mkdir ROI_Seeds
  34. mkdir(['onesample_',filename(1:end-4)])
  35. mkdir(['zFC_',filename(1:end-4)])
  36. %»­Ã¿¸ö¶ÀÁ¢µÄROIСÇò
  37. [coord, ROIs]=xlsread([path,filesep,'Articles_Included_Excel',filesep,filename(1:end-4),'.xlsx']);%¶ÁÈ¡excelÎļþÀïÃæµÄ×ø±ê
  38. Reference_image_path = 'C:\Users\HP\Desktop\FCNM\Code';%ÕâÀï·¾¶ÐèÒªÐ޸ģ¬»­ROIСÇòµÄʱºòÐèÒªÕÒÒ»¸ö²Î¿¼Îļþ£¬Õâ¸ö²Î¿¼ÎļþµÄ·Ö±æÂÊÒªºÍ·ÖÎöµÄËùÓб»ÊÔͼÏñµÄ·Ö±æÂÊÒªÒ»ÖÂ
  39. ROI_ball_gen(coord,ROIs,[Reference_image_path,filesep,'BrainMask_mm.nii'],4); %BrainMask_mm.niiΪ¶¨ÒåROI·Ö±æÂÊËùÐèͼÏñ£»4Ϊ¶¨ÒåСÇò°ë¾¶4mm£»
  41. %½«Ã¿Ò»ÆªÑо¿µÄ¶ÀÁ¢µÄROIСÇòºÏ²¢³É´óµÄÒ»¸ömask
  42. Combine_file={};
  43. for j = 1:length(ROIs)
  44. combine_file = [radius_Seeds_Excel,filename(1:end-4),'\',filename(1:end-4),'_ROI',num2str(j,'%02d'),'.nii,1'];
  45. Combine_file=[Combine_file;{combine_file}];
  46. end
  47. Combine_ROI=[];
  48. for k = 1:length(ROIs)
  49. combine_ROI=['i',int2str(k)];
  50. Combine_ROI=[Combine_ROI,'+',combine_ROI];
  51. Combine_ROIs=Combine_ROI(2:end);
  52. end
  54. jobs{1}.spm.util.imcalc.input = Combine_file;
  55. jobs{1}.spm.util.imcalc.output = [filename(1:end-4),'_Seeds'];
  56. jobs{1}.spm.util.imcalc.outdir = {[radius_Seeds_Excel,filename(1:end-4),'\ROI_Seeds']};
  57. jobs{1}.spm.util.imcalc.expression = Combine_ROIs;
  58. jobs{1}.spm.util.imcalc.var = struct('name', {}, 'value', {});
  59. jobs{1}.spm.util.imcalc.options.dmtx = 0;
  60. jobs{1}.spm.util.imcalc.options.mask = 0;
  61. jobs{1}.spm.util.imcalc.options.interp = 1;
  62. jobs{1}.spm.util.imcalc.options.dtype = 4;
  63. spm('defaults', 'FMRI')
  64. spm_jobman('run', jobs)
  65. clear jobs
  66. %ʹÓÃspmºÏ³ÉMask²¢ÃüÃû
  67. end
  69. %% µÚÎå²½ ¿ªÊ¼ÓÃdpabi¼ÆË㹦ÄÜÁ¬½Ó
  70. working_directory = 'E:\';%Ê×Ïȶ¨ÒåºÃËùÓб»ÊÔÔÚµÄ×ÜÎļþ¼ÐµÄλÖÃ
  71. %ÕâÀïÐèҪעÒ⣬ÎÒÃÇÐèÒª×Ô¼º´ò¿ªdpabiÈí¼þÊÖ¶¯ÉèÖÃÒ»¸ö²ÎÊýÎļþ£¬µÚÒ»²½Òªµ÷ÓÃÕâ¸ö²ÎÊý£¬ºóÃæµÄ¾Í²»ÓùÜÁË
  72. load('C:\Users\HP\Desktop\FCNM\dpabi.mat');%ÕÒµ½Õâ¸ömatÎļþ²¢ÇÒ¼ÓÔؽøÈ¥
  73. for i = 1:col
  74. filename=char(Filename(i));
  75. Cfg.CalFC.ROIDef{1,1}=[radius_Seeds_Excel,filename(1:end-4),'\ROI_Seeds\',filename(1:end-4),'_Seeds.nii'];
  77. AutoDataProcessParameter = Cfg;
  78. WorkingDir = [];
  79. SubjectListFile = [];
  80. IsAllowGUI= [];
  81. [Error, AutoDataProcessParameter]=DPARSFA_run(AutoDataProcessParameter,WorkingDir,SubjectListFile,IsAllowGUI);%µ½ÕâÒ»²½Ó¦¸ÃÊÇ¿ªÊ¼¼ÆË㹦ÄÜÁ¬½ÓÁË
  83. file = dir([working_directory,filesep,'Results\','FC_',Cfg.StartingDirName,filesep,'zFC*']);
  85. for j = 1:length(file)
  86. movefile([working_directory,filesep,'Results\','FC_',Cfg.StartingDirName,filesep,file(j).name],...
  87. [radius_Seeds_Excel,filename(1:end-4),'\zFC_',filename(1:end-4)]);
  88. end
  89. rmdir([working_directory,filesep,'Masks'],'s');
  90. rmdir([working_directory,filesep,'Results'],'s');%°ÑÅܳöÀ´µÄ½á¹û¸´Öƹýºó¾Í¿ÉÒÔɾµôÁË
  91. movefile([radius_Seeds_Excel,filename(1:end-4),'\P*'],[radius_Seeds_Excel,filename(1:end-4),'\ROI_Seeds'])%ÕûÀíÒ»ÏÂÎļþ
  93. %ÕâÀ￪ʼ¼ÆËãµ¥Ñù±¾T¼ìÑéÁË
  94. %Till_spmT_0001
  95. filename=char(Filename(i));
  96. zFC_namelist = dir([radius_Seeds_Excel,filename(1:end-4),'\zFC_',filename(1:end-4),'\zFC*']);
  97. len = length(zFC_namelist);
  98. for j = 1:len
  99. file_name{j} = [radius_Seeds_Excel,filename(1:end-4),'\zFC_',filename(1:end-4),'\',zFC_namelist(j).name];
  100. end
  101. File_name = file_name(1:end)';
  102. %-----------------------------------------------------------------------
  103. %Factorial design specification
  104. jobs{1}.spm.stats.factorial_design.dir = {[radius_Seeds_Excel,filename(1:end-4),'\onesample_',filename(1:end-4)]};
  105. jobs{1}.spm.stats.factorial_design.des.t1.scans = File_name;
  106. jobs{1}.spm.stats.factorial_design.cov = struct('c', {}, 'cname', {}, 'iCFI', {}, 'iCC', {});
  107. jobs{1}.spm.stats.factorial_design.multi_cov = struct('files', {}, 'iCFI', {}, 'iCC', {});
  108. jobs{1}.spm.stats.factorial_design.masking.tm.tm_none = 1;
  109. jobs{1}.spm.stats.factorial_design.masking.im = 1;
  110. jobs{1}.spm.stats.factorial_design.masking.em = {'C:\Users\HP\Desktop\FCNM\Code\BrainMask_mm.nii,1'};%ÕâÀï×¢Ò⣬Ҫ¸Ä³É²Î¿¼µÄmaskÔڵķ¾¶£¬×Ô¼ºÐ´Ò»ÏÂ
  111. jobs{1}.spm.stats.factorial_design.globalc.g_omit = 1;
  112. jobs{1}.spm.stats.factorial_design.globalm.gmsca.gmsca_no = 1;
  113. jobs{1}.spm.stats.factorial_design.globalm.glonorm = 1;
  115. spm('defaults', 'FMRI');
  116. spm_jobman('run', jobs);
  117. clear jobs
  120. jobs{1}.spm.stats.fmri_est.spmmat = {[radius_Seeds_Excel,filename(1:end-4),'\onesample_',filename(1:end-4),'\SPM.mat']};
  121. jobs{1}.spm.stats.fmri_est.write_residuals = 0;
  122. jobs{1}.spm.stats.fmri_est.method.Classical = 1;
  124. spm('defaults', 'FMRI');
  125. spm_jobman('run', jobs);
  126. clear jobs
  127. %Model estimation
  129. jobs{1}.spm.stats.con.spmmat = {[radius_Seeds_Excel,filename(1:end-4),'\onesample_',filename(1:end-4),'\SPM.mat']};
  130. jobs{1}.spm.stats.con.consess{1}.tcon.name = 'onesample';
  131. jobs{1}.spm.stats.con.consess{1}.tcon.weights = 1;
  132. jobs{1}.spm.stats.con.consess{1}.tcon.sessrep = 'none';
  133. jobs{1}.spm.stats.con.delete = 0;
  135. spm('defaults', 'FMRI');
  136. spm_jobman('run', jobs);
  137. clear jobs
  138. end

Coordinate_network_mapping_main_codes.m, no license · at the source

Overview

Authors: Chenglong Liu1,2,3, Yu Song1,2,3, Xufeng Zhao1,2,3, Zhili Wang1,2,3, Liping Yan1,2,3, Yongqiang Yu1,2,3, Jiajia Zhu1,2,3
ORCID iDs: Chenglong Liu, Yu Song, Yongqiang Yu, Jiajia Zhu
  1. Department of Radiology, The First Affiliated Hospital of Anhui Medical University, Hefei, 230022 China
  2. Research Center of Clinical Medical Imaging, Anhui Province, Hefei, 230032 China
  3. Anhui Provincial Key Laboratory for Brain Bank Construction and Resource Utilization, Hefei, 230032 China
Institutions: First Affiliated Hospital of Anhui Medical University (China); Anhui Medical University (China)
Journal: Translational psychiatry, volume 16, issue 1, article 214
Dates: received 11 December 2025; accepted 16 March 2026; published online 30 March 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1038/s41398-026-04005-6 · PMID 41912491 · PMCID PMC13039395 · OpenAlex W7143392855
Open access: gold, a free copy (OpenAlex)
Status: code verified (how the code is found and verified)
Categories: human (organism), depression (population)
Methods: Spectral & time-frequency, Connectivity, Statistics, Smoothing, state filtering, decompositions, fMRI & imaging, Preprocessing
Keywords: Neuroscience, Psychiatric disorders
MeSH: Anhedonia*, Brain*, Major Depressive Disorder*, Nerve Net*, Adult, Brain Mapping, Female, Gyrus Cinguli, Humans, Magnetic Resonance Imaging, Male (* major topic)
Topic: Functional Brain Connectivity Studies (Cognitive Neuroscience, Neuroscience), according to OpenAlex
Funding: Natural Science Foundation of Anhui Province (Anhui Provincial Natural Science Foundation) (2308085MH277); National Natural Science Foundation of China (National Science Foundation of China) (82371928, 82471952)
Citations: cited by 3 papers (Europe PMC); 99 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Repository

Its files are read in the Code ↔ Paper reader above.

OSF 6h7vj

License: none: the authors keep all their rights
State: the link answers, verified on 30 September 2026
Evidence: files inventoried
Size: 3 files
Software Heritage: not checked
Found in: “Data availability”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: SPM (2 files), DPABI (1 file), Statistics and Machine Learning Toolbox (1 file)
Availability: 1 check, the latest on 30 September 2026: the link answers (HTTP 200)
  • 30 September 2026: the link answers (HTTP 200)
2 files
At the source: osf.io/6h7vj/

The paper's code and data availability statement is in the Data section.

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Data

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Code and data availability statement

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Read it in the paper: doi.org/10.1038/s41398-026-04005-6.

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Version 1, 30 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 7 authors, 2 keywords, 11 MeSH terms, 2 funders, 99 references.

Cite

This paper

Liu, C., Song, Y., Zhao, X., Wang, Z., Yan, L., Yu, Y., & Zhu, J. (2026). Brain network localization of anhedonia. Translational psychiatry, 16(1), 214. https://doi.org/10.1038/s41398-026-04005-6

BibTeX

@article{liu2026brain,
author = {Liu, Chenglong and Song, Yu and Zhao, Xufeng and Wang, Zhili and Yan, Liping and Yu, Yongqiang and Zhu, Jiajia},
title = {{Brain network localization of anhedonia}},
journal = {Translational psychiatry},
year = {2026},
month = mar,
volume = {16},
number = {1},
pages = {214},
publisher = {Nature Publishing Group},
issn = {2158-3188},
doi = {10.1038/s41398-026-04005-6},
url = {https://doi.org/10.1038/s41398-026-04005-6},
pmid = {41912491},
pmcid = {PMC13039395}
}

RIS

TY - JOUR
AU - Liu, Chenglong
AU - Song, Yu
AU - Zhao, Xufeng
AU - Wang, Zhili
AU - Yan, Liping
AU - Yu, Yongqiang
AU - Zhu, Jiajia
TI - Brain network localization of anhedonia
T2 - Translational psychiatry
J2 - Transl Psychiatry
PY - 2026
DA - 2026/03/30
VL - 16
IS - 1
SP - 214
SN - 2158-3188
PB - Nature Publishing Group
DO - 10.1038/s41398-026-04005-6
UR - https://doi.org/10.1038/s41398-026-04005-6
LA - en
ER -

CSL-JSON

{
"id": "10.1038/s41398-026-04005-6",
"type": "article-journal",
"title": "Brain network localization of anhedonia",
"container-title": "Translational psychiatry",
"author": [
{
"family": "Liu",
"given": "Chenglong"
},
{
"family": "Song",
"given": "Yu"
},
{
"family": "Zhao",
"given": "Xufeng"
},
{
"family": "Wang",
"given": "Zhili"
},
{
"family": "Yan",
"given": "Liping"
},
{
"family": "Yu",
"given": "Yongqiang"
},
{
"family": "Zhu",
"given": "Jiajia"
}
],
"container-title-short": "Transl Psychiatry",
"volume": "16",
"issue": "1",
"page": "214",
"DOI": "10.1038/s41398-026-04005-6",
"PMID": "41912491",
"PMCID": "PMC13039395",
"ISSN": "2158-3188",
"publisher": "Nature Publishing Group",
"URL": "https://doi.org/10.1038/s41398-026-04005-6",
"language": "en",
"issued": {
"date-parts": [
[
2026,
3,
30
]
]
}
}

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