Cortex-wide characterization of decision-making neural dynamics during spatial navigation.
Overview
- Department of Neuroscience, University of Minnesota,Minneapolis, MN USA
- Graduate Program in Biomedical Engineering, University of Minnesota,Minneapolis, MN USA
- Department of Mechanical Engineering, University of Minnesota,Minneapolis, MN USA
- Graduate Program in Neuroscience, University of Minnesota,Minneapolis, MN USA
Abstract
The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.
Code
No file of the authors' code could be read here: it is described below, and read at its source.
codeocean:cd462a14-cfb3-4445-b8e2-5a8238f760bf
Availability: 1 check, the latest on 30 September 2026: cannot be verified
- 30 September 2026: cannot be verified
Code availability statement
The paper has a code availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:
- it points to the authors' code: codeocean:cd462a14-cfb3-
4445-b8e2-5a8238f760bf
Read it in the paper: doi.org/10.1038/s41467-026-71074-y.
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 0 scripts, each with its path and the digest of its content;
- no match between paragraphs and code yet;
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
Datasets cited
- doi:10.5061/
dryad.mkkwh71f8 , at Dryad; found in “Data availability”
Data availability statement
The paper has a data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:
- it points to a dataset: Dryad 10.5061/
dryad.mkkwh71f8
Read it in the paper: doi.org/10.1038/s41467-026-71074-y.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 1, 30 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 11 authors, 5 keywords, 10 MeSH terms, 1 funder, 144 references, 1 RRID.
Cite
This paper
Haley, S. P., Surinach, D. A., Nietz, A. K., Popa, L. S., Carter, R. E., Zecker, L. S., Hjort, M. M., Theis, A. M., Gonzales, J. A., Kodandaramaiah, S. B., & Ebner, T. J. (2026). Cortex-wide characterization of decision-making neural dynamics during spatial navigation. Nature communications, 17(1), 4482. https://
BibTeX
@article{haley2026cortex
author = {Haley, Samuel P. and Surinach, Daniel A. and Nietz, Angela K. and Popa, Laurentiu S. and Carter, Russell E. and Zecker, Lucas S. and Hjort, Madelyn M. and Theis, Alexis M. and Gonzales, Julie A. and Kodandaramaiah, Suhasa B. and Ebner, Timothy J.},
title = {{Cortex-wide characterization of decision-making neural dynamics during spatial navigation}},
journal = {Nature communications},
year = {2026},
month = mar,
volume = {17},
number = {1},
pages = {4482},
publisher = {Nature Publishing Group},
issn = {2041-1723},
doi = {10.1038/
url = {https://
pmid = {41876534},
pmcid = {PMC13187261}
}
RIS
TY - JOUR
AU - Haley, Samuel P.
AU - Surinach, Daniel A.
AU - Nietz, Angela K.
AU - Popa, Laurentiu S.
AU - Carter, Russell E.
AU - Zecker, Lucas S.
AU - Hjort, Madelyn M.
AU - Theis, Alexis M.
AU - Gonzales, Julie A.
AU - Kodandaramaiah, Suhasa B.
AU - Ebner, Timothy J.
TI - Cortex-wide characterization of decision-making neural dynamics during spatial navigation
T2 - Nature communications
J2 - Nat Commun
PY - 2026
DA - 2026/
VL - 17
IS - 1
SP - 4482
SN - 2041-1723
PB - Nature Publishing Group
DO - 10.1038/
UR - https://
LA - en
ER -
CSL-JSON
{
"id": "10.1038/
"type": "article-journal",
"title": "Cortex-wide characterization of decision-making neural dynamics during spatial navigation",
"container-title": "Nature communications",
"author": [
{
"family": "Haley",
"given": "Samuel P."
},
{
"family": "Surinach",
"given": "Daniel A."
},
{
"family": "Nietz",
"given": "Angela K."
},
{
"family": "Popa",
"given": "Laurentiu S."
},
{
"family": "Carter",
"given": "Russell E."
},
{
"family": "Zecker",
"given": "Lucas S."
},
{
"family": "Hjort",
"given": "Madelyn M."
},
{
"family": "Theis",
"given": "Alexis M."
},
{
"family": "Gonzales",
"given": "Julie A."
},
{
"family": "Kodandaramaiah",
"given": "Suhasa B."
},
{
"family": "Ebner",
"given": "Timothy J."
}
],
"container-title-short":
"volume": "17",
"issue": "1",
"page": "4482",
"DOI": "10.1038/
"PMID": "41876534",
"PMCID": "PMC13187261",
"ISSN": "2041-1723",
"publisher": "Nature Publishing Group",
"URL": "https://
"language": "en",
"issued": {
"date-parts": [
[
2026,
3,
25
]
]
}
}
The tracing map gets a citation of its own once an author has validated it and it has a DOI.
Similar papers
The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.
- [1] doi:10.1038/s41467-024-51816-6 [code]
- Wide-field calcium imaging of cortical activation and functional connectivity in externally- and internally-driven locomotion.Journal: Nature communicationsIn common: mouse, 21 references, author Timothy J. Ebner
- [2] doi:10.1038/s41467-023-37804-2
- A distributed and efficient population code of mixed selectivity neurons for flexible navigation decisions.Journal: Nature communicationsIn common: cognitive, mouse, 21 references
- [3] doi:10.1038/s41593-022-01245-9 [code]
- Pyramidal cell types drive functionally distinct cortical activity patterns during decision-making.Journal: Nature neuroscienceIn common: cognitive, 19 references
- [4] doi:10.1038/s41467-023-42609-4 [code]
- Emergence of cortical network motifs for short-term memory during learning.Journal: Nature communicationsIn common: mouse, 17 references
- [5] doi:10.1038/s42003-026-09541-x [code]
- Widefield cortical activity and functional connectivity during motorized locomotion.Journal: Communications biologyIn common: mouse, 15 references
- [6] doi:10.7554/elife.76051 [code]
- Cognitive experience alters cortical involvement in goal-directed navigation.Journal: eLifeIn common: mouse, 15 references
- [7] doi:10.7554/elife.109717 [code]
- Retrosplenial cortex enables context-dependent goal-directed sensorimotor transformation.Journal: eLifeIn common: mouse, 14 references
- [8] doi:10.1126/sciadv.adt3634
- Pan-cortical cellular imaging in freely behaving mice using a miniaturized micro-camera array microscope (mini-MCAM).Journal: Science advancesIn common: mouse, 9 references, author Suhasa B. Kodandaramaiah
- [9] doi:10.7554/elife.94167 [code]
- Pan-cortical 2-photon mesoscopic imaging and neurobehavioral alignment in awake, behaving mice.Journal: eLifeIn common: mouse, 14 references
- [10] doi:10.1038/s42003-024-06926-8 [code]
- Divergent subregional information processing in mouse prefrontal cortex during working memory.Journal: Communications biologyIn common: cognitive, mouse, 13 references
Contribute
The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.
Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.
Claim this paper
Correct its record
Say what each link of this record is, remove the ones that are not the paper's, add the ones that are missing. The correction becomes a new version of the record, in its Versions section.
Validate its tracing map
You validate the map as this page shows it: 1 repository of the authors' code, each at its verified commit and with its license, 0 scripts, and 0 matches between paragraphs and code (see the Code and Map sections). It then receives a DOI on Zenodo, with you (your ORCID iD) and OSCR as its creators; the code itself is not deposited.
The map's fingerprint: sha256:1580cd3f3f8bb96e…
Add the badge to the code's README
If you are an author or a maintainer of this paper's code, you can add this badge. It says what OSCR knows of the paper (its code, its validated tracing map) and links the code to this page. Paste one of these snippets under the README's title. Keep the two marks around it, so that the badge can be replaced in place and is never added twice. OSCR changes nothing in your repository.
Markdown
<!-- oscr-badge:start -->
[](https://openscicode.org/badge/doi/10.1038/s41467-026-71074-y)
<!-- oscr-badge:end -->reStructuredText
.. oscr-badge:start
.. image:: https://openscicode.org/badge/doi/10.1038/s41467-026-71074-y.svg
:target: https://openscicode.org/badge/doi/10.1038/s41467-026-71074-y
:alt: OSCR
.. oscr-badge:endHTML
<!-- oscr-badge:start -->
<a href="https://openscicode.org/badge/doi/10.1038/s41467-026-71074-y"><img src="https://openscicode.org/badge/doi/10.1038/s41467-026-71074-y.svg" alt="OSCR"></a>
<!-- oscr-badge:end -->If you choose to, you can have the badge kept up to date for you, with oscr badge --write from the command line or with the GitHub Action in your repository's workflows. Every other form and option (a card, AsciiDoc, LaTeX, shields.io) is on the badge page.
Request its removal
To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).
Discussion, reproductions, activity
Discussion: code errors and mismatches between the code and the paper about this paper and its code, from readers and its authors, beside the paper and its tracing map.
Report a mismatch between the code and the paper · Report a code error (signed in)
Reproductions: reports from readers who ran the authors' code and did not get the paper's result, what they ran, with which environment, commit and data.
Report a reproduction failure (signed in)
Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.
