OSCR

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain.

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Code

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alleninstitute.github.io/abc_atlas_access

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AllenInstitute/scrattch.mapping

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AllenInstitute/scrattch.bigcat

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LTLA/BiocNeighbors

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alleninstitute/abc_atlas_access

License: BSD-2-Clause
State: the link answers
Copies: kept by the registry: this license allows it
Tools found in the code: anndata, cowplot, data.table, ggplot2, igraph, limma, Matplotlib, NumPy, pandas, Pillow, randomForest, reshape2, reticulate, tidyverse, UMAP, WGCNA

Overview

Authors: Zizhen Yao, Cindy T J van Velthoven, Michael Kunst, Meng Zhang, Delissa McMillen, Changkyu Lee, Won Jung, Jeff Goldy, Aliya Abdelhak, Matthew Aitken, Katherine Baker, Pamela Baker, Eliza Barkan, Darren Bertagnolli, Ashwin Bhandiwad, Cameron Bielstein, Prajal Bishwakarma, Jazmin Campos, Daniel Carey, Tamara Casper
and 81 other authorsAnish Bhaswanth Chakka, Rushil Chakrabarty, Sakshi Chavan, Min Chen, Michael Clark, Jennie Close, Kirsten Crichton, Scott Daniel, Peter DiValentin, Tim Dolbeare, Lauren Ellingwood, Elysha Fiabane, Timothy Fliss, James Gee, James Gerstenberger, Alexandra Glandon, Jessica Gloe, Joshua Gould, James Gray, Nathan Guilford, Junitta Guzman, Daniel Hirschstein, Windy Ho, Marcus Hooper, Mike Huang, Madie Hupp, Kelly Jin, Matthew Kroll, Kanan Lathia, Arielle Leon, Su Li, Brian Long, Zach Madigan, Jessica Malloy, Jocelin Malone, Zoe Maltzer, Naomi Martin, Rachel McCue, Ryan McGinty, Nicholas Mei, Jose Melchor, Emma Meyerdierks, Tyler Mollenkopf, Skyler Moonsman, Thuc Nghi Nguyen, Sven Otto, Trangthanh Pham, Christine Rimorin, Augustin Ruiz, Raymond Sanchez, Lane Sawyer, Nadiya Shapovalova, Noah Shepard, Cliff Slaughterbeck, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Nasmil Valera Cuevas, Shane Vance, Katherine Wadhwani, Katelyn Ward, Boaz Levi, Colin Farrell, Rob Young, Brian Staats, Ming-Qiang Michael Wang, Carol L Thompson, Shoaib Mufti, Chelsea M Pagan, Lauren Kruse, Nick Dee, Susan M Sunkin, Luke Esposito, Michael J Hawrylycz, Jack Waters, Lydia Ng, Kimberly Smith, Bosiljka Tasic, Xiaowei Zhuang, Hongkui Zeng
Journal: Nature
Published: 13 December 2023
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.1038/s41586-023-06812-z
License: CC BY
Institutions: Allen Institute for Brain Science (United States), Howard Hughes Medical Institute (United States), Harvard University (United States), University of Pennsylvania (United States), Genentech (United States)
Categories: genetics / omics (modality), histology / microscopy (modality), mouse (organism)

Data

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Markdown
<!-- oscr-badge:start -->
[![OSCR](https://openscicode.org/badge/doi/10.1038/s41586-023-06812-z.svg)](https://openscicode.org/badge/doi/10.1038/s41586-023-06812-z)
<!-- oscr-badge:end -->
reStructuredText
.. oscr-badge:start

.. image:: https://openscicode.org/badge/doi/10.1038/s41586-023-06812-z.svg
   :target: https://openscicode.org/badge/doi/10.1038/s41586-023-06812-z
   :alt: OSCR

.. oscr-badge:end
HTML
<!-- oscr-badge:start -->
<a href="https://openscicode.org/badge/doi/10.1038/s41586-023-06812-z"><img src="https://openscicode.org/badge/doi/10.1038/s41586-023-06812-z.svg" alt="OSCR"></a>
<!-- oscr-badge:end -->

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