OSCR

Shared striatal neurons exhibit context-specific dynamics for internally and externally driven actions.

Overview

  1. Department of Psychiatry and Neuroscience, New York University Grossman School of Medicine, New York, NY 10016, USA
  2. Allen Institute, Allen Institute for Neural Dynamics, Seattle, WA 98109, USA
  3. Zuckerman Mind Brain Behavior Institute, Departments of Neuroscience and Neurology, Columbia University, New York, NY 10027, USA
Institutions: New York University (United States); Allen Institute (United States); Allen Institute for Neural Dynamics (United States); Mortimer B. Zuckerman Mind Brain Behavior Institute (United States); Columbia University (United States)
Journal: Science advances, volume 12, issue 31, article eaed9386
Dates: received 14 November 2025; accepted 22 June 2026; published online 29 July 2026; in print July 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1126/sciadv.aed9386 · PMID 42525769 · PMCID PMC13418543 · OpenAlex W7171630984
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: mouse (organism)
Methods: Spectral & time-frequency, Statistics, Smoothing, state filtering, decompositions, Machine learning, Preprocessing, fMRI & imaging, Single-unit activity, calcium imaging
MeSH: Corpus Striatum*, Neurons*, Animals, Cues, Male, Medium Spiny Neurons, Mice, Movement, Receptors, Dopamine D1, Receptors, Dopamine D2 (* major topic)
Journal subjects: Neuroscience, Machine Learning
Topic: Neural dynamics and brain function (Cognitive Neuroscience, Neuroscience), according to OpenAlex
Funding: NIH (R01 NS126391); Burroughs Wellcome Fund (BBRF CAMS 1018390); Deutsche Forschungsgemeinschaft (Walter Benjamin Programme); Whitehall Foundation Research Project (2021-12-091)
Citations: cited by 1 paper (Europe PMC); 46 references in the paper

Abstract

Animals can initiate movements either in response to external cues or from internal drive, yet how the brain flexibly supports both remains unclear. Disorders such as Parkinson’s disease disrupt these modes differently, suggesting distinct underlying mechanisms. These differences could arise from specialized circuits or from shared neuronal populations that shift their dynamics across contexts. To distinguish between these possibilities, we performed two-photon calcium imaging in the dorsolateral striatum as mice executed the same lever press either spontaneously or in response to a cue. Unsupervised clustering identified neurons modulated during cue, movement, or postaction periods. Critically, the same neurons encoded movement across initiation contexts, but their population dynamics diverged before movement. Both D1- and D2-expressing spiny projection neurons contributed to these dynamics, with D1-SPNs more active at the time of the sensory stimulus. These results show that context shapes neural dynamics within a shared movement-encoding population, revealing a context-generalizable striatal code that supports flexible movement initiation across internal and external drives.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

No file of the authors' code could be read here: it is described below, and read at its source.

Zenodo 16333867

License: CC-BY-4.0
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Size: 1 file
Software Heritage: not checked
Found in: “Data, code, and materials availability:”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
  • 27 September 2026: the link answers (HTTP 200)

The paper's code and data availability statement is in the Data section.

Tracing map

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  • 0 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

Data, code, and materials availability

All data and code needed to evaluate and reproduce the results in the paper are present in the paper and/or the Supplementary Materials. Additional datasets generated and analyzed during the current study, along with code for data analysis and figure production, are available at Zenodo (https://zenodo.org/uploads/16333867). The data are organized in a structured database format on which the analysis code directly operates, enabling full reproduction of the results and figures presented in this study. The deposited dataset includes processed calcium imaging data, behavioral data, and all scripts used for clustering, decoding, and statistical analyses. Materials used in this study are available from the vendors and distributors listed in Materials and Methods. No new materials were generated in this study.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 8 authors, 10 MeSH terms, 4 funders, 45 references.

Cite

This paper

Klee, J. L., Fernando-Peiris, S., Suresh, S., Rodrigues-Vaz, I., Peterka, D. S., Costa, R. M., Athalye, V. R., & Sippy, T. (2026). Shared striatal neurons exhibit context-specific dynamics for internally and externally driven actions. Science advances, 12(31), eaed9386. https://doi.org/10.1126/sciadv.aed9386

BibTeX

@article{klee2026shared,
author = {Klee, Jan L. and Fernando-Peiris, Sulekh and Suresh, Sahil and Rodrigues-Vaz, Ines and Peterka, Darcy S. and Costa, Rui M. and Athalye, Vivek R. and Sippy, Tanya},
title = {{Shared striatal neurons exhibit context-specific dynamics for internally and externally driven actions}},
journal = {Science advances},
year = {2026},
month = jul,
volume = {12},
number = {31},
pages = {eaed9386},
publisher = {American Association for the Advancement of Science},
issn = {2375-2548},
doi = {10.1126/sciadv.aed9386},
url = {https://doi.org/10.1126/sciadv.aed9386},
pmid = {42525769},
pmcid = {PMC13418543}
}

RIS

TY - JOUR
AU - Klee, Jan L.
AU - Fernando-Peiris, Sulekh
AU - Suresh, Sahil
AU - Rodrigues-Vaz, Ines
AU - Peterka, Darcy S.
AU - Costa, Rui M.
AU - Athalye, Vivek R.
AU - Sippy, Tanya
TI - Shared striatal neurons exhibit context-specific dynamics for internally and externally driven actions
T2 - Science advances
J2 - Sci Adv
PY - 2026
DA - 2026/07/29
VL - 12
IS - 31
SP - eaed9386
SN - 2375-2548
PB - American Association for the Advancement of Science
DO - 10.1126/sciadv.aed9386
UR - https://doi.org/10.1126/sciadv.aed9386
LA - en
ER -

CSL-JSON

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