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Human cortical networks trade communication efficiency for computational reliability.

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Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

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The authors' code

Python · 31 lines · 1.2 KB · MIT

  1. # Configuration file for the Sphinx documentation builder.
  2. #
  3. # For the full list of built-in configuration values, see the documentation:
  4. # https://www.sphinx-doc.org/en/master/usage/configuration.html
  5. # -- Project information -----------------------------------------------------
  6. # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
  7. import os
  8. import sys
  9. sys.path.insert(0, os.path.abspath('..'))
  10. import yanat
  11. project = 'YANAT'
  12. copyright = '2024, Kayson Fakhar, Shrey Dixit'
  13. author = 'Kayson Fakhar, Shrey Dixit'
  14. release = yanat.__version__
  15. # -- General configuration ---------------------------------------------------
  16. # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
  17. extensions = ["sphinx.ext.todo", "sphinx.ext.viewcode", "sphinx.ext.autodoc", "myst_parser", "nbsphinx", "sphinx.ext.napoleon"]
  18. templates_path = ['_templates']
  19. exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
  20. # -- Options for HTML output -------------------------------------------------
  21. # https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
  22. html_theme = 'sphinx_rtd_theme'
  23. html_static_path = ['_static']

conf.py at commit 25ee298, under MIT · at the source

Overview

  1. MRC Cognition and Brain Sciences Unit, University of Cambridge, Cambridge, UK
  2. Institute of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
  3. Department of Electrical and Electronic Engineering, Imperial College London, London, UK
  4. Imperial-X, Imperial College London, London, UK
  5. Centre for Eudaimonia and Human Flourishing, Linacre College and Department of Psychiatry, University of Oxford, Oxford, UK
  6. St. John’s College, University of Cambridge, Cambridge, UK
  7. Montreal Neurological Institute, Montreal, Canada
  8. Developmental Imaging, Murdoch Children’s Research Institute, Parkville, Australia
  9. School of Psychological Sciences, The Turner Institute for Brain and Mental Health, Monash University, Clayton, Australia
  10. Department of Psychiatry, University of Cambridge, Cambridge, UK
  11. Institute of Psychiatry, Psychology & Neuroscience, King’s College London, London, UK
  12. Department of Health Sciences, Boston University, Boston, MA, USA
Journal: Science advances, volume 12, issue 36, article eaef2894
Dates: received 7 January 2026; accepted 28 July 2026; published online 2 September 2026; in print September 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1126/sciadv.aef2894 · PMID 42685191 · PMCID PMC13537246 · OpenAlex W7115011065
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: computational modeling (no new data) (modality), human (organism)
Methods: Statistics, Smoothing, state filtering, decompositions, Connectivity, Graphs, Machine learning, fMRI & imaging, Physiology & signal measures, Preprocessing
MeSH: Cerebral Cortex*, Communication*, Models, Neurological*, Nerve Net*, Computer Simulation, Humans (* major topic)
Topic: Neural Networks and Reservoir Computing (Artificial Intelligence, Computer Science), according to OpenAlex
Funding: Wellcome Trust (226924/Z/23/Z, 309245/Z/24/Z); National Institute for Health Research (NIHR) (NIHR203312)
Citations: not cited yet (Europe PMC); 114 references in the paper

Abstract

Brains are often described as cost-efficient communication networks that optimally balance long-connection costs against fast communication. Inspired by the “use it or lose it” principle, we present a game-theoretic model of self-organizing neural units showing the brain is suboptimal in both regards. Regional competition for connectivity under propagative dynamics yields networks resembling the human cortex yet more efficient and economical. In addition, using a reservoir computing framework, we find comparable information processing capacity, but synthetic optimal communication networks show lower computational reliability. Last, virtual lesions reveal why these networks are fragile: To optimize communication, they funnel information through a spatially clustered “oligarchy” of transmodal hubs. The human brain instead uses a distributed “rich-club” backbone that better resists targeted attacks, despite higher wiring costs and less efficient communication. Cortical networks thus trade both cost and efficiency for reliable computation, highlighting computational reliability as an overlooked and perhaps even more prominent driver of brain connectivity than wiring cost or communication efficiency.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repositories

Its files are read in the Code ↔ Paper reader above.

fabridamicelli.github.io/echoes

License: none: the authors keep all their rights
State: the link answers, verified on 26 September 2026
Evidence: the link answers
Software Heritage: not checked
Found in: “Data, code, and materials availability:”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 26 September 2026: the link answers (HTTP 200)
  • 26 September 2026: the link answers (HTTP 200)

netneurotools.readthedocs.io

License: none: the authors keep all their rights
State: the link answers, verified on 26 September 2026
Evidence: the link answers
Software Heritage: not checked
Found in: “Data, code, and materials availability:”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 26 September 2026: the link answers (HTTP 200)
  • 26 September 2026: the link answers (HTTP 200)

netneurolab.github.io/neuromaps

License: none: the authors keep all their rights
State: the link answers, verified on 26 September 2026
Evidence: the link answers
Software Heritage: not checked
Found in: “Data, code, and materials availability:”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 26 September 2026: the link answers (HTTP 200)
  • 26 September 2026: the link answers (HTTP 200)

kuffmode/yanat

License: MIT
State: the link answers, verified on 26 September 2026
Evidence: files inventoried
Commit: 25ee29860814679592de8c43ebc9d5c9bb720989, 2 December 2025
Languages: Python (13), Jupyter (2)
Size: 29 files, 15 scripts
Software Heritage: not archived
Found in: “Data, code, and materials availability:”
Holds: README, license file, CITATION.cff, environment (pyproject.toml), tests, continuous integration, documentation, 2 notebooks
Tools: Matplotlib (2 files), netneurotools (2 files), NumPy (2 files), SciPy (2 files), seaborn (2 files)
Availability: 1 check, the latest on 26 September 2026: the link answers
  • 26 September 2026: the link answers
5 files

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 4 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 3 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

Data, code, and materials availability

All data and code needed to evaluate and reproduce the conclusions in the paper are present in the paper and/or the Supplementary Materials. This study did not generate new materials. Specifically, the simulated optimal communication networks are available at: https://doi.org/10.5281/zenodo.20446126. The dataset used in this work is available at: www.humanconnectome.org/study/hcp-young-adult/document/900-subjects-data-release, and the following open-source Python libraries were used: YANAT (Yet Another Network Analysis Toolkit; https://kuffmode.github.io/YANAT/) for the game-theoretic framework, Echoes (https://fabridamicelli.github.io/echoes/) for neuromorphic modeling, Netneurotools (https://netneurotools.readthedocs.io/en/latest/) for thresholding empirical networks, Brain Connectivity Toolbox (BCT; https://github.com/aestrivex/bctpy) for constructing degree-preserved null models, Networkx (https://networkx.org/) for constructing fully random networks, and Neuromaps (https://netneurolab.github.io/neuromaps/) for comparing brain maps. A plug-and-play tutorial for the game-theoretic generative model, including features that were not explored here, is also available at: https://github.com/kuffmode/YANAT/blob/main/examples/generative_game_theoric.ipynb.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 9 authors, 6 MeSH terms, 2 funders, 99 references.

Cite

This paper

Fakhar, K., Akarca, D., Luppi, A. I., Oldham, S., Hadaeghi, F., Vértes, P. E., Bullmore, E., Hilgetag, C., & Astle, D. (2026). Human cortical networks trade communication efficiency for computational reliability. Science advances, 12(36), eaef2894. https://doi.org/10.1126/sciadv.aef2894

BibTeX

@article{fakhar2026human,
author = {Fakhar, Kayson and Akarca, Danyal and Luppi, Andrea I and Oldham, Stuart and Hadaeghi, Fatemeh and Vértes, Petra E and Bullmore, Ed and Hilgetag, Claus and Astle, Duncan},
title = {{Human cortical networks trade communication efficiency for computational reliability}},
journal = {Science advances},
year = {2026},
month = sep,
volume = {12},
number = {36},
pages = {eaef2894},
publisher = {American Association for the Advancement of Science},
issn = {2375-2548},
doi = {10.1126/sciadv.aef2894},
url = {https://doi.org/10.1126/sciadv.aef2894},
pmid = {42685191},
pmcid = {PMC13537246}
}

RIS

TY - JOUR
AU - Fakhar, Kayson
AU - Akarca, Danyal
AU - Luppi, Andrea I
AU - Oldham, Stuart
AU - Hadaeghi, Fatemeh
AU - Vértes, Petra E
AU - Bullmore, Ed
AU - Hilgetag, Claus
AU - Astle, Duncan
TI - Human cortical networks trade communication efficiency for computational reliability
T2 - Science advances
J2 - Sci Adv
PY - 2026
DA - 2026/09/02
VL - 12
IS - 36
SP - eaef2894
SN - 2375-2548
PB - American Association for the Advancement of Science
DO - 10.1126/sciadv.aef2894
UR - https://doi.org/10.1126/sciadv.aef2894
LA - en
ER -

CSL-JSON

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