OSCR

FLIM quantification of temperature-dependent enzyme-NADH binding dynamics.

Code ↔ Paper

4 matches between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 4 matches
  1. [1] § Methods › FLIM analysis ↔ DynamicTempCode.m, lines 1–13 · score 0.68 · SPCimage, 249–256, raw, dimensions, deconvoluted, artifact
  2. [2] § Methods › FLIM analysis ↔ CodeDynamicSoln.m, lines 1–25 · score 0.64 · SPCimage, 249–256, raw, artifact, summed, positions
  3. [3] § Methods › FLIM of solutions and cells ↔ DynamicTempCode.m, lines 457–481 · score 0.60 · instrument response function, urea crystals, IRF, cell
  4. [4] § Methods › FLIM of solutions and cells ↔ CodeDynamicSoln.m, lines 27–48 · score 0.59 · instrument response function, urea crystals, IRF, NADH

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

The paper is loaded when this pane is shown.

The authors' code

MATLAB · 525 lines · 19 KB · no license · 2 matches

The registry keeps no copy of this file: its repository has no license, so its authors keep all their rights to it. Your browser shows it from its source, with JavaScript.

It can be read at the source: DynamicTempCode.m.

Overview

Authors: Jocelyn Martinez1, Anna Theodossiou1, Linghao Hu1, Alex J Walsh1
ORCID iDs: Jocelyn Martinez, Alex J Walsh
  1. Department of Biomedical Engineering, Texas A&M University, College Station, TX, 77840, USA
Institutions: Texas A&M University (United States)
Journal: Biomedical optics express, volume 17, issue 7, pages 3776-3791
Dates: received 21 April 2026; accepted 2 June 2026; published online 18 June 2026
Type: Research article · Language: English
License: none stated
Identifiers: DOI 10.1364/boe.603469 · PMID 42460335 · PMCID PMC13372349 · OpenAlex W7163700498
Open access: gold, a free copy (OpenAlex)
Status: code verified
Methods: Statistics, Preprocessing, Smoothing, state filtering, decompositions, Connectivity
Topic: Mitochondrial Function and Pathology (Molecular Biology, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: NIGMS NIH HHS (R35 GM142990)
Citations: cited by 1 paper (Europe PMC); 46 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (none stated) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Repository

Its files are read in the Code ↔ Paper reader above, with 4 matches between paragraphs and lines of code.

walshlab/Infrared-Temperature-FLIM

License: none: the authors keep all their rights
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Commit: f5b5071b387a6d675ac8673f0bc0e8ac52fc9a7e, 6 February 2026
Languages: MATLAB (3)
Size: 9 files, 3 scripts
Software Heritage: not archived
Found in: the references
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: Curve Fitting Toolbox (1 file)
Availability: 1 check, the latest on 27 September 2026: the link answers
  • 27 September 2026: the link answers
3 files, not copied: shown from their source

OSCR keeps no copy of these files: this repository has no license that allows it. The reader above shows each one from its source, fetched by your browser at commit f5b5071, when its fingerprint is the one OSCR verified. How this works.

At the source: github.com/walshlab/Infrared-Temperature-FLIM

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 3 scripts, each with its path and the digest of its content;
  • 4 matches between paragraphs of the paper and lines of the code (method lexical-v1);
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Code and data availability statement

The paper has a code and data availability statement. Its license (none stated) does not allow reproducing it here; in short, from what the harvester recognized in it:

  • no repository, dataset or request procedure was recognized in it

Read it in the paper: doi.org/10.1364/boe.603469.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 4 authors, 1 funder, 44 references.

Cite

This paper

Martinez, J., Theodossiou, A., Hu, L., & Walsh, A. J. (2026). FLIM quantification of temperature-dependent enzyme-NADH binding dynamics. Biomedical optics express, 17(7), 3776-3791. https://doi.org/10.1364/boe.603469

BibTeX

@article{martinez2026flim,
author = {Martinez, Jocelyn and Theodossiou, Anna and Hu, Linghao and Walsh, Alex J},
title = {{FLIM quantification of temperature-dependent enzyme-NADH binding dynamics}},
journal = {Biomedical optics express},
year = {2026},
month = jun,
volume = {17},
number = {7},
pages = {3776--3791},
publisher = {Optica Publishing Group},
issn = {2156-7085},
doi = {10.1364/boe.603469},
url = {https://doi.org/10.1364/boe.603469},
pmid = {42460335},
pmcid = {PMC13372349}
}

RIS

TY - JOUR
AU - Martinez, Jocelyn
AU - Theodossiou, Anna
AU - Hu, Linghao
AU - Walsh, Alex J
TI - FLIM quantification of temperature-dependent enzyme-NADH binding dynamics
T2 - Biomedical optics express
J2 - Biomed Opt Express
PY - 2026
DA - 2026/06/18
VL - 17
IS - 7
SP - 3776
EP - 3791
SN - 2156-7085
PB - Optica Publishing Group
DO - 10.1364/boe.603469
UR - https://doi.org/10.1364/boe.603469
LA - en
ER -

CSL-JSON

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"container-title-short": "Biomed Opt Express",
"volume": "17",
"issue": "7",
"page": "3776-3791",
"DOI": "10.1364/boe.603469",
"PMID": "42460335",
"PMCID": "PMC13372349",
"ISSN": "2156-7085",
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The tracing map gets a citation of its own once an author has validated it and it has a DOI.

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