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Igneous: Distributed dense 3D segmentation meshing, neuron skeletonization, and hierarchical downsampling.

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seung-lab/igneous

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seung-lab/zmesh

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google/neuroglancer

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hsidky/neurogen

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SridharJagannathan/pyroglancer

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janelia-flyem/neutu

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funkey/skeletopyze

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seung-lab/skeletonization

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saalfeldlab/n5

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saalfeldlab/render

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janelia-flyem/dvid

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jhuapl-boss/ingest-client

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scalableminds/webknossos-libs

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seung-lab/python-task-queue

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seung-lab/cloud-files

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zarr-developers/zarr-python

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dcwatson/deflate

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ebiggers/libdeflate

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seung-lab/pyspng-seunglab

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nurpax/pyspng

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jfolz/simplejpeg

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seung-lab/compressedseg

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seung-lab/tinybrain

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zlateski/zi_lib

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seung-lab/DracoPy

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aplbrain/saber

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JaneliaSciComp/SharkViewer

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saalfeldlab/paintera

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Tools found in the code: CuPy, h5py, imageio, Keras, Matplotlib, NetworkX, NiBabel, Numba, NumPy, OpenCV, pandas, Pillow, PyTorch, scikit-image, scikit-learn, SciPy, SimpleITK, tifffile

Overview

Authors: William Silversmith, Aleksandar Zlateski, J. Alexander Bae, Ignacio Tartavull, Nico Kemnitz, Jingpeng Wu, H. Sebastian Seung
Journal: Frontiers in neural circuits
Published: 25 November 2022
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.3389/fncir.2022.977700
License: CC BY
Institutions: Princeton University (United States), Massachusetts Institute of Technology (United States)
Categories: histology / microscopy (modality)

Data

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