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Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling

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AllenInstitute/mfishtools

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AllenInstitute

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AllenInstitute/human_patchseq_excitatory

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AllenInstitute/skeleton_keys

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AllenInstitute/ccf_streamlines

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matthewMallory/morph_utils

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Tools found in the code: AllenSDK, ggplot2, h5py, Matplotlib, NumPy, pandas, scikit-image, scikit-learn, scikit-posthocs, SciPy, seaborn, SimpleITK, statannotations, statsmodels, WGCNA

Overview

Authors: Rachel Dalley, Sarah Walling-Bell, Jeremy A. Miller, Femke Waleboer, Julian Thijssen, Audrey McCutcheon, Emily Gelfand, Matt Mallory, Cristina Radaelli, Xiao-Ping Liu, Scott Sawchuk, Lauren Alfiler, Julia Andrade, Jeanelle Ariza, Angela Ayala, Katherine Baker, Eliza Barkan, Stuard Barta, Kyla Berry, Darren Bertagnolli
and 120 other authorsKris Bickley, Madeline Bixby, Krista Blake, Jasmine Bomben, Krissy Brouner, Agata Budzillo, Jazmin Campos, Trangthanh Cardenas, Daniel Carey, Tamara Casper, Anish Bhaswanth Chakka, Michael Clark, Tom V. Coopmans, Kirsten Crichton, Nick Dee, Nadezhda I. Dotson, Stan L.W. Driessens, Tom Egdorf, Lauren Ellingwood, Chris English, Rachel Enstrom, Rebecca de Frates, Anna A. Galakhova, Amanda Gary, Jessica Gloe, Jeff Goldy, Hong Gu, Kristen Hadley, Samantha D. Hastings, Tim S. Heistek, Dijon Hill, Windy Ho, Alvin Huang, Daan C. Jol, Atlas Jordan, Zoe C. Juneau, Matthew Jungert, Madhav Kannan, Sara Kebede, Ayoub J. Khalil, Lisa Kim, Mean-Hwan Kim, Megan Koch, Ágnes Katalin Kocsis, Matthew Kroll, Aditi Kumar, Gabriela Leon, Jocelin Malone, Rusty Mann, Michelle Maxwell, Medea McGraw, Delissa A. McMillen, Eline J. Mertens, Verjinia D. Metodieva, Miranda R. Moore, Alice Mukora, Kamiliam Nasirova, Lindsay Ng, Aaron Oldre, Alana Oyama, Daniel Park, Elliot Phillips, Christina Alice Pom, Lydia Potekhina, Ramkumar Rajanbabu, Shea T. Ransford, Ingrid Redford, Christine Rimorin, Dana Rocha, Augustin Ruiz, David Sandman, Natia Shamugia, Ana Rios Sigler, Josef Sulc, Tjerk P. Swinkels, Michael Tieu, Éva Toth, Alex Tran, Jessica Trinh, Herman Tung, Marshall VanNess, Sara Vargas, Maria Camila Vergara, Katherine Wadhwani, Grace Williams, Laurens Witter, Anubhav G. Amin, Charles Cobbs, Richard Ellenbogen, Samuel Emerson, Manuel Ferreira, Nathan W. Gouwens, Benjamin Grannan, Ryder P. Gwinn, Jason S. Hauptman, Sander Idema, Andrew L. Ko, Lauren Kruse, Brian Long, David Noske, Jeffrey G. Ojemann, Anoop Patel, Jacob J. Ruzevick, Dan L. Silbergeld, Kimberly A. Smith, Niels Verburg, Jack Waters, Tim Jarsky, Boudewijn Lelieveldt, Gábor Tamás, Huibert D. Mansvelder, Natalia A. Goriounova, Christiaan P.J. de Kock, Nikolai C. Dembrow, Jonathan T. Ting, Hongkui Zeng, Ed S. Lein, Brian Kalmbach, Staci A. Sorensen, Brian R. Lee
Journal: bioRxiv (preprint)
Published: 8 January 2026
Type: Preprint
Status: code verified (how the code is found and verified)
DOI: 10.64898/2026.01.08.698257
License: CC BY-NC-ND
Institutions: Allen Institute for Brain Science (United States), Vrije Universiteit Amsterdam (Netherlands), Leiden University Medical Center (Netherlands), University of Washington (United States), University of Szeged (Hungary), Swedish Medical Center (United States), Seattle Children's Hospital (United States), Amsterdam UMC Location Vrije Universiteit Amsterdam (Netherlands), Delft University of Technology (Netherlands)
Categories: genetics / omics (modality), human (organism)

Data

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