OSCR

Spatio-Temporal Dynamics of Macroglial Cell Organization and Proximity to Blood Vessels During Postnatal Development.

Code ↔ Paper

4 matches between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 4 matches · 1 of them tie a paragraph to a whole file, not to given lines: a weak match, whose lines are not tinted
  1. [1] § Materials and Methods › Image Analysis ↔ src/main/java/VeCell_Tools/Tools.java, lines 1002–1064 · score 0.76 · standard deviation, Analyze Skeleton, branch length, junctions, neighbour, SDI
  2. [2] § Materials and Methods › Image Analysis ↔ src/main/java/VeCell_Tools/Cellpose/CellposeTask.java, the whole file · a weak match · score 0.73 · flow threshold, stitching threshold, pretrained model, Cellpose, diameter
  3. [3] § Materials and Methods › Image Analysis ↔ src/main/java/VeCell_Tools/Cellpose/CellposeTaskSettings.java, lines 61–126 · score 0.69 · cell probability, flow threshold, stitching threshold, Cellpose
  4. [4] § Materials and Methods › Image Analysis ↔ src/main/java/VeCell_Tools/Tools.java, lines 586–642 · score 0.51 · automated thresholding, Gaussian, median, CLIJ, filter

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

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The authors' code

Java · 1,151 lines · 46 KB · no license · 2 matches

The registry keeps no copy of this file: its repository has no license, so its authors keep all their rights to it. Your browser shows it from its source, with JavaScript.

It can be read at the source: src/main/java/VeCell_Tools/Tools.java.

Overview

Authors: Naomie Guille1, Héloïse Monnet1, Tristan Hourcade1, Philippe Mailly1, Martine Cohen‐Salmon1, Anne‐Cécile Boulay1
ORCID iDs: Naomie Guille, Héloïse Monnet, Tristan Hourcade, Martine Cohen‐Salmon, Anne‐Cécile Boulay
  1. Center for Interdisciplinary Research in Biology (CIRB), Collège de France, CNRS, INSERM, Université Paris Sciences et Lettres (PSL), Paris, France
Institutions: Centre National de la Recherche Scientifique (France); Inserm (France); Collège de France (France); Université Paris Sciences et Lettres (France); Centre Interdisciplinaire de Recherche en Biologie (France)
Journal: International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience, volume 86, issue 5, article e70161
Dates: received 10 December 2025; accepted 2 July 2026; published online 28 July 2026; in print August 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1002/jdn.70161 · PMID 42517543 · PMCID PMC13411183 · OpenAlex W7171572316
Open access: hybrid, a free copy (OpenAlex)
Status: code verified
Categories: human (organism), mouse (organism)
Methods: Statistics, Machine learning, fMRI & imaging
Keywords: astrocyte, blood vessel, cell density, cell distribution, cortical development, oligodendrocyte
MeSH: Blood Vessels*, Neuroglia*, Somatosensory Cortex*, Age Factors, Animals, Animals, Newborn, Astrocytes, Female, Gene Expression Regulation, Developmental, Male, Mice, Mice, Inbred C57BL, Neurodevelopment, SOX9 Transcription Factor, SOXE Transcription Factors (* major topic)
Topic: Neurogenesis and neuroplasticity mechanisms (Developmental Neuroscience, Neuroscience), according to OpenAlex
Funding: Université PSL; France Sclérose en Plaques; ANR (ANR-23-CE16-0030); Fondation pour la Recherche Médicale (EQU202303016292)
Citations: not cited yet (Europe PMC); 52 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Repository

Its files are read in the Code ↔ Paper reader above, with 4 matches between paragraphs and lines of code.

orion-cirb/VeCell

License: none: the authors keep all their rights
State: the link answers, verified on 26 September 2026
Evidence: files inventoried
Commit: a84b0387457d39c2cd91b448712089fbbf9201c0, 10 December 2025
Languages: Java (8), Jupyter (2)
Size: 23 files, 10 scripts
Software Heritage: not archived
Found in: the text, “Image Analysis”
Holds: README, 2 notebooks
Not found: license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: Cellpose (2 files), Matplotlib (2 files), NumPy (2 files), pandas (2 files)
Availability: 1 check, the latest on 26 September 2026: the link answers
  • 26 September 2026: the link answers
11 files, not copied: shown from their source

OSCR keeps no copy of these files: this repository has no license that allows it. The reader above shows each one from its source, fetched by your browser at commit a84b038, when its fingerprint is the one OSCR verified. How this works.

At the source: github.com/orion-cirb/VeCell

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 10 scripts, each with its path and the digest of its content;
  • 4 matches between paragraphs of the paper and lines of the code (method lexical-v1);
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Data availability statement

The paper has a data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

  • it says that the data are available on request

Read it in the paper: doi.org/10.1002/jdn.70161.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 3, 28 September 2026

  • Publisher: — → Wiley

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 6 authors, 6 keywords, 15 MeSH terms, 4 funders, 51 references.

Cite

This paper

Guille, N., Monnet, H., Hourcade, T., Mailly, P., Cohen‐Salmon, M., & Boulay, A. (2026). Spatio-Temporal Dynamics of Macroglial Cell Organization and Proximity to Blood Vessels During Postnatal Development. International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience, 86(5), e70161. https://doi.org/10.1002/jdn.70161

BibTeX

@article{guille2026spatio,
author = {Guille, Naomie and Monnet, Héloïse and Hourcade, Tristan and Mailly, Philippe and Cohen‐Salmon, Martine and Boulay, Anne‐Cécile},
title = {{Spatio-Temporal Dynamics of Macroglial Cell Organization and Proximity to Blood Vessels During Postnatal Development}},
journal = {International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience},
year = {2026},
month = aug,
volume = {86},
number = {5},
pages = {e70161},
publisher = {Wiley},
issn = {0736-5748},
doi = {10.1002/jdn.70161},
url = {https://doi.org/10.1002/jdn.70161},
pmid = {42517543},
pmcid = {PMC13411183}
}

RIS

TY - JOUR
AU - Guille, Naomie
AU - Monnet, Héloïse
AU - Hourcade, Tristan
AU - Mailly, Philippe
AU - Cohen‐Salmon, Martine
AU - Boulay, Anne‐Cécile
TI - Spatio-Temporal Dynamics of Macroglial Cell Organization and Proximity to Blood Vessels During Postnatal Development
T2 - International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience
J2 - Int J Dev Neurosci
PY - 2026
DA - 2026/08/01
VL - 86
IS - 5
SP - e70161
SN - 0736-5748
PB - Wiley
DO - 10.1002/jdn.70161
UR - https://doi.org/10.1002/jdn.70161
LA - en
ER -

CSL-JSON

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"container-title": "International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience",
"author": [
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"DOI": "10.1002/jdn.70161",
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"date-parts": [
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}

The tracing map gets a citation of its own once an author has validated it and it has a DOI.

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