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Genome-wide association studies of brain diffusion kurtosis imaging phenotypes.

Code ↔ Paper

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Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

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The authors' code

Python · 12 lines · 316 B · BSD-2-Clause

  1. import gl
  2. gl.resetdefaults()
  3. gl.azimuthelevation(70, 15)
  4. gl.meshload('BrainMesh_ICBM152Right.mz3')
  5. gl.overlayload('motor_4t95vol.nii.gz')
  6. gl.overlayminmax(1,2,12)
  7. gl.overlayload('motor_4t95vol.nii.gz')
  8. gl.overlayminmax(2,-1,-2)
  9. gl.colorbarvisible(1)
  10. gl.overlaytransparencyonbackground(25)
  11. gl.meshcurv()

basic_paint_surface.py at commit 69f80b6, under BSD-2-Clause · at the source

Overview

Authors: Jilian Fu1, Jianhua Wang2, Hui Xue1, Meiyun Wang3,4, Bing Zhang5, Wenzhen Zhu6, Shijun Qiu7, Zuojun Geng8, Guangbin Cui9, Quan Zhang10, Yongqiang Yu11, Weihua Liao12,13,14, Bo Gao15,16, Xiaojun Xu17, Tong Han18, Zhenwei Yao19, Mulin Jun Li2, Feng Liu1, Meng Liang20, Sijia Wang1
and 26 other authorsQiang Xu1, Jiayuan Xu1, Peng Zhang21, Wei Li21, Dapeng Shi3, Caihong Wang22, Su Lui23,24, Zhihan Yan25, Feng Chen26, Jing Zhang27,28, Jiance Li29, Wen Shen30, Yanwei Miao31, Dawei Wang32, Junfang Xian33, Jia-Hong Gao34, Xiaochu Zhang35, Kai Xu36, Xi-Nian Zuo37,38, Longjiang Zhang39, Zhaoxiang Ye21, Jingliang Cheng22, Wen Qin1, Hui Zhang40, Chunshui Yu1,41, The CHIMGEN Consortium
41 affiliations
  1. Department of Radiology, Tianjin Key Laboratory of Functional Imaging, and State Key Laboratory of Experimental Hematology, Tianjin Medical University General Hospital, 300052, Tianjin, China
  2. Department of Bioinformatics, The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, School of Basic Medical Sciences, Tianjin Medical University, 300070, Tianjin, China
  3. Department of Radiology, Henan Provincial People's Hospital & Zhengzhou University People's Hospital, 450003, Zhengzhou, China
  4. Biomedical Institute, Henan Academy of Sciences, 450199, Zhengzhou, China
  5. Department of Radiology, Drum Tower Hospital, Medical School of Nanjing University, 210008, Nanjing, China
  6. Department of Radiology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, 430030, Wuhan, China
  7. Department of Medical Imaging, The First Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine, 510405, Guangzhou, China
  8. Department of Medical Imaging, The Second Hospital of Hebei Medical University, 050000, Shijiazhuang, China
  9. Functional and Molecular Imaging Key Lab of Shaanxi Province & Department of Radiology, Tangdu Hospital, Air Force Medical University, 710038, Xi'an, China
  10. Department of Radiology, Characteristic Medical Center of Chinese People's Armed Police Force, 300162, Tianjin, China
  11. Department of Radiology, The First Affiliated Hospital of Anhui Medical University, 230022, Hefei, China
  12. Department of Radiology, Xiangya Hospital, Central South University, 410008, Changsha, China
  13. Molecular Imaging Research Center of Central South University, 410008, Changsha, China
  14. National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, 410008 Changsha, China
  15. Department of Radiology, The Affiliated Hospital of Guizhou Medical University, 550004 Guiyang, China
  16. Department of Radiology, Yantai Yuhuangding Hospital, 264000, Yantai, China
  17. Department of Radiology, The Second Affiliated Hospital of Zhejiang University, School of Medicine, 310009 Hangzhou, China
  18. Department of Radiology, Tianjin Huanhu Hospital, 300350, Tianjin, China
  19. Department of Radiology, Huashan Hospital, Fudan University, 200040, Shanghai, China
  20. School of Medical Imaging and Tianjin Key Laboratory of Functional Imaging, Tianjin Medical University, 300203, Tianjin, China
  21. Department of Radiology, Tianjin Medical University Cancer Institute & Hospital, National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University, Ministry of Education, Key Laboratory of Cancer Prevention and Therapy, Tianjin, 300060, China
  22. Department of Magnetic Resonance Imaging, The First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, China
  23. Department of Radiology, Huaxi MR Research Center (HMRRC), Functional and Molecular Imaging key Laboratory of Sichuan Province, West China Hospital of Sichuan University, 610041, Chengdu, China
  24. Research Unit of Psychoradiology, Chinese Academy of Medical Sciences, 610041 Chengdu, China
  25. Department of Radiology, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, 325027, Wenzhou, China
  26. Department of Radiology, Hainan General Hospital (Hainan Affiliated Hospital of Hainan Medical University), 570311, Haikou, China
  27. Department of Magnetic Resonance, Lanzhou University Second Hospital, 730030, Lanzhou, China
  28. Gansu Province Clinical Research Center for Functional and Molecular Imaging, 730030, Lanzhou, China
  29. Department of Radiology, The First Affiliated Hospital of Wenzhou Medical University, 325000, Wenzhou, China
  30. Department of Radiology, Tianjin First Center Hospital, 300192, Tianjin, China
  31. Department of Radiology, The First Affiliated Hospital of Dalian Medical University, 116011, Dalian, China
  32. Department of Radiology, Qilu Hospital of Shandong University, 250012, Jinan, China
  33. Department of Radiology, Beijing Tongren Hospital, Capital Medical University, 100730, Beijing, China
  34. Center for MRI Research, Academy for Advanced Interdisciplinary Studies, Peking University, 100871, Beijing, China
  35. Division of Life Science and Medicine, University of Science & Technology of China, 230027, Hefei, China
  36. Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, 221006, Xuzhou, China
  37. Developmental Population Neuroscience Research Center at IDG/McGovern Institute for Brain Research, Beijing Normal University, 100875, Beijing, China
  38. Institute of Psychology, Chinese Academy of Sciences, 100101, Beijing, China
  39. Department of Radiology, Jinling Hospital, Affiliated Hospital of Medical School, Nanjing University, 210002, Nanjing, China
  40. Department of Radiology, The First Hospital of Shanxi Medical University, 030001, Taiyuan, China
  41. CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, 200031, Shanghai, China
Institutions: Tianjin Medical University General Hospital (China); State Key Laboratory of Experimental Hematology; Tianjin Medical University (China); Zhengzhou University (China); Henan Academy of Sciences (China); Henan Provincial People's Hospital (China); Nanjing Drum Tower Hospital (China); Nanjing University (China); Tongji Hospital (China); Huazhong University of Science and Technology (China); Guangzhou University of Chinese Medicine (China); Guangzhou University (China); First Affiliated Hospital of Guangzhou University of Chinese Medicine (China); Hebei Medical University (China); Second Hospital of Hebei Medical University (China); Tang Du Hospital (China); Air Force Medical University (China); Chinese People's Armed Police Force; Anhui Medical University (China); First Affiliated Hospital of Anhui Medical University (China); Central South University (China); Xiangya Hospital Central South University (China); Yuhuangding Hospital (China); Affiliated Hospital of Guizhou Medical University (China); Second Affiliated Hospital of Zhejiang University (China); Zhejiang University (China); Tianjin Huanhu Hospital (China); Fudan University (China); Huashan Hospital (China); Tianjin Medical University Cancer Institute and Hospital (China); First Affiliated Hospital of Zhengzhou University (China); Chinese Academy of Medical Sciences & Peking Union Medical College (China); West China Medical Center of Sichuan University (China); West China Hospital of Sichuan University (China); Wenzhou Medical University (China); Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University (China); Hainan General Hospital (China); Hainan Medical University (China); Lanzhou University Second Hospital (China); Lanzhou University (China); First Affiliated Hospital of Wenzhou Medical University (China); Tianjin First Center Hospital (China); Dalian Medical University (China); First Affiliated Hospital of Dalian Medical University (China); Qilu Hospital of Shandong University (China); Beijing Tongren Hospital (China); Capital Medical University (China); Peking University (China); University of Science and Technology of China (China); Affiliated Hospital of Xuzhou Medical College (China); Chinese Academy of Sciences (China); Beijing Normal University (China); Institute of Psychology, Chinese Academy of Sciences (China); Nanjing General Hospital of Nanjing Military Command (China)
Journal: EBioMedicine, volume 127, article 106261
Dates: received 20 May 2025; accepted 2 April 2026; published online 17 April 2026; in print May 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1016/j.ebiom.2026.106261 · PMID 42000319 · PMCID PMC13099350 · OpenAlex W7154696589
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: genetics / omics (modality), structural MRI / diffusion (modality), human (organism), clinical / translational (subfield)
Methods: Connectivity, Statistics, Smoothing, state filtering, decompositions, Machine learning, Preprocessing, fMRI & imaging
Keywords: Diffusional kurtosis imaging, Genome-wide association analysis, Diffusion tensor imaging, Brain health-related outcomes, Mental disorders
MeSH: Brain*, Diffusion Tensor Imaging*, Genome-Wide Association Study*, Phenotype*, Female, Genetic Predisposition to Disease, Genetic Risk Score, Humans, Male, Middle Aged, Polymorphism, Single Nucleotide (* major topic)
Topic: Advanced Neuroimaging Techniques and Applications (Radiology, Nuclear Medicine and Imaging, Medicine), according to OpenAlex
Funding: National Natural Science Foundation of China (82430063, 82030053, 81425013, 82402253); National Key Research and Development Program of China (2018YFC1314300); Tianjin Key Medical Discipline Construction Project; Tianjin Natural Science Foundation (25JCQNJC00020)
Citations: not cited yet (Europe PMC); 47 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Repositories

Its files are read in the Code ↔ Paper reader above.

neurolabusc/surf-ice

License: BSD-2-Clause
State: the link answers, verified on 29 September 2026
Evidence: files inventoried
Commit: 69f80b6e676ce56d1d99825c3579e59fc1e7e419, 27 April 2026
Languages: Python (37), MATLAB (5), JavaScript (1)
Size: 537 files, 43 scripts
Software Heritage: archived
Found in: the text, “Introduction”
Holds: README, license file
Not found: CITATION.cff, environment file, tests, continuous integration, documentation
Tools: GIfTI library for MATLAB (1 file), SPM (1 file)
Availability: 1 check, the latest on 29 September 2026: the link answers
  • 29 September 2026: the link answers
45 files

precision-medicine-um/ComBatHarmonization

License: Artistic-2.0
State: the link answers, verified on 29 September 2026
Evidence: files inventoried
Commit: fe0ff46fe722e79d044af02067d7aa517856ab23, 26 June 2018
Languages: MATLAB (7), R (7)
Size: 21 files, 14 scripts
Software Heritage: not archived
Found in: “Data sharing statement”
Holds: README, license file
Not found: CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 29 September 2026: the link answers
  • 29 September 2026: the link answers
16 files

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 2 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 57 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Code and data availability statement

The paper has a code and data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

Read it in the paper: doi.org/10.1016/j.ebiom.2026.106261.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 29 September 2026: the first record

Recorded: type, language, journal, volume, pages, dates, 46 authors, 5 keywords, 11 MeSH terms, 4 funders, 44 references.

Cite

This paper

Fu, J., Wang, J., Xue, H., Wang, M., Zhang, B., Zhu, W., Qiu, S., Geng, Z., Cui, G., Zhang, Q., Yu, Y., Liao, W., Gao, B., Xu, X., Han, T., Yao, Z., Li, M. J., Liu, F., Liang, M., . . . The CHIMGEN Consortium. (2026). Genome-wide association studies of brain diffusion kurtosis imaging phenotypes. EBioMedicine, 127, 106261. https://doi.org/10.1016/j.ebiom.2026.106261

BibTeX

@article{fu2026genome,
author = {Fu, Jilian and Wang, Jianhua and Xue, Hui and Wang, Meiyun and Zhang, Bing and Zhu, Wenzhen and Qiu, Shijun and Geng, Zuojun and Cui, Guangbin and Zhang, Quan and Yu, Yongqiang and Liao, Weihua and Gao, Bo and Xu, Xiaojun and Han, Tong and Yao, Zhenwei and Li, Mulin Jun and Liu, Feng and Liang, Meng and Wang, Sijia and Xu, Qiang and Xu, Jiayuan and Zhang, Peng and Li, Wei and Shi, Dapeng and Wang, Caihong and Lui, Su and Yan, Zhihan and Chen, Feng and Zhang, Jing and Li, Jiance and Shen, Wen and Miao, Yanwei and Wang, Dawei and Xian, Junfang and Gao, Jia-Hong and Zhang, Xiaochu and Xu, Kai and Zuo, Xi-Nian and Zhang, Longjiang and Ye, Zhaoxiang and Cheng, Jingliang and Qin, Wen and Zhang, Hui and Yu, Chunshui and {The CHIMGEN Consortium}},
title = {{Genome-wide association studies of brain diffusion kurtosis imaging phenotypes}},
journal = {EBioMedicine},
year = {2026},
month = apr,
volume = {127},
pages = {106261},
publisher = {Elsevier},
issn = {2352-3964},
doi = {10.1016/j.ebiom.2026.106261},
url = {https://doi.org/10.1016/j.ebiom.2026.106261},
pmid = {42000319},
pmcid = {PMC13099350}
}

RIS

TY - JOUR
AU - Fu, Jilian
AU - Wang, Jianhua
AU - Xue, Hui
AU - Wang, Meiyun
AU - Zhang, Bing
AU - Zhu, Wenzhen
AU - Qiu, Shijun
AU - Geng, Zuojun
AU - Cui, Guangbin
AU - Zhang, Quan
AU - Yu, Yongqiang
AU - Liao, Weihua
AU - Gao, Bo
AU - Xu, Xiaojun
AU - Han, Tong
AU - Yao, Zhenwei
AU - Li, Mulin Jun
AU - Liu, Feng
AU - Liang, Meng
AU - Wang, Sijia
AU - Xu, Qiang
AU - Xu, Jiayuan
AU - Zhang, Peng
AU - Li, Wei
AU - Shi, Dapeng
AU - Wang, Caihong
AU - Lui, Su
AU - Yan, Zhihan
AU - Chen, Feng
AU - Zhang, Jing
AU - Li, Jiance
AU - Shen, Wen
AU - Miao, Yanwei
AU - Wang, Dawei
AU - Xian, Junfang
AU - Gao, Jia-Hong
AU - Zhang, Xiaochu
AU - Xu, Kai
AU - Zuo, Xi-Nian
AU - Zhang, Longjiang
AU - Ye, Zhaoxiang
AU - Cheng, Jingliang
AU - Qin, Wen
AU - Zhang, Hui
AU - Yu, Chunshui
AU - The CHIMGEN Consortium
TI - Genome-wide association studies of brain diffusion kurtosis imaging phenotypes
T2 - EBioMedicine
J2 - eBioMedicine
PY - 2026
DA - 2026/04/17
VL - 127
SP - 106261
SN - 2352-3964
PB - Elsevier
DO - 10.1016/j.ebiom.2026.106261
UR - https://doi.org/10.1016/j.ebiom.2026.106261
LA - en
ER -

CSL-JSON

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