structural MRI / diffusion

Modality: 592 papers with a page, 394 of them with their authors' code.

Tuesday, 29 September 2026 (1 paper)

[1] doi: [paper, data]

Toward reliable computer-aided brain tumor diagnosis: a contrast-enhanced deep learning approach with hybrid KNN classification

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

Tuesday, 15 September 2026 (2 papers)

[2] Code ↔ Paper doi:10.1162/imag.a.1352 [paper, repository]

Brain-age in ultra-low-field MRI: How well does it work?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: james-cole/brainageR (LGPL-3.0), Zenodo 3476365 (other-open), LemuelPuglisi/SynthBA (no license)

Status: code verified, 15 files readable, 2 matches

[3] doi:10.1212/wnl.0000000000218502 [paper]

Retinal Optical Coherence Tomography-Angiography and Longitudinal Changes in Cognition and Cerebral Small Vessel Disease.

Journal: Neurology

Status: code on request

Saturday, 12 September 2026 (2 papers)

[4] doi:10.1016/j.ynirp.2026.100405 [paper, data]

White matter microstructure and motor function in amnestic mild cognitive impairment and Alzheimer's dementia.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[5] doi:10.1080/01652176.2026.2720640 [paper, data]

Evaluation of a 0.05 T low-field MRI system for canine brain imaging via comparison with images acquired at 1.5 T field strength: a pilot cadaver study.

Journal: The veterinary quarterly

Status: data only, 2 datasets cited

Friday, 11 September 2026 (2 papers)

[6] Code ↔ Paper doi:10.1162/imag.a.1366 [paper, repository]

MICAFlow: Fast and robust MRI preprocessing bridging research neuroimaging and clinical practice.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MICA-MNI/MICAFlow (GPL-3.0), mica-mni.github.io/micaflow (no license), MICA-MNI/MICAFlow-Models (no license), MICA-MNI/LAMAReg (MIT), MICA-MNI/LAMAR-Models (no license)

Status: code verified, 94 files readable, 17 matches

[7] Code ↔ Paper doi:10.1093/braincomms/fcag333 [paper, repository]

Development and application of a multi-task fusion model using susceptibility-weighted imaging-based substantia nigra and adjacent structures for prognostic prediction of subthalamic nucleus deep brain stimulation in Parkinson's disease.

Journal: Brain communications

Authors' code: ceasorcai/PD (no license)

Status: code verified, 3 files readable, 2 matches

Thursday, 10 September 2026 (3 papers)

[8] doi:10.1093/braincomms/fcag341 [paper]

Distinct and shared multimodal neuroimaging patterns in clinical frontotemporal dementia syndromes.

Journal: Brain communications

Status: code on request

[9] doi:10.1162/imag.a.1356 [paper]

Sources of the N15 TMS-evoked potential following motor cortex stimulation localize rostrals to TMS-induced electric fields and depend on dose.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[10] doi:10.1111/joa.70225 [paper]

Immune proteomic associations with indices of cortical development in 5-year-old children.

Journal: Journal of anatomy

Status: code on request

Wednesday, 9 September 2026 (2 papers)

[11] Code ↔ Paper doi:10.1016/j.isci.2026.117446 [paper, repository]

Volume-inflation registration (INFREG) for morphometric analysis of human focal cortical dysplasia type II.

Journal: iScience

Authors' code: ifsunrise/brain-inflate-registration (no license), ai-med/Vox2Cortex (GPL-3.0)

Status: code verified, 81 files readable, 2 matches

[12] Code ↔ Paper doi:10.1371/journal.pbio.3003927 [paper, repository]

Brain structural and functional connectivity converge prenatally but diverge after birth.

Journal: PLoS biology

Authors' code: Zenodo 21316924 (CC-BY-4.0), brainlife/BCT (MIT)

Status: code verified, 140 files readable, 4 matches

Tuesday, 8 September 2026 (6 papers)

[13] doi:10.1162/imag.a.1345 [paper, data]

Causal evidence for dorsal stream involvement in object shape recognition: A tractography-guided ccPAS Registered Report study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[14] Code ↔ Paper doi:10.1162/imag.a.1355 [paper, repository]

Taming dimensionality in big neuroimaging data: Efficient orthonormal projective NMF via stochastic learning and data compression.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sotiraslab/csopNMF (Apache-2.0)

Status: code verified, 9 files readable, 2 matches

[15] Code ↔ Paper doi:10.1162/imag.a.1350 [paper, repository]

Clarifying and extending permutation tests on brain map correspondence through mixed-effects modeling.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: spin-test/spin-test (MIT), frantisekvasa/rotate_parcellation (MIT), qcwang77/brainmap-bootstrap (no license)

Status: code verified, 103 files readable, 2 matches

[16] Code ↔ Paper doi:10.1093/braincomms/fcag318 [paper, repository]

Antenatal maternal anaemia and infant brain structure: high-field (3 T) and ultra-low-field (64 mT) MRI findings from South Africa.

Journal: Brain communications

Authors' code: UNITY-Physics (no license), UNITY-Physics/fw-minimorph (MIT), JERingshaw/Khula-Anaemia-Imaging-Analysis (no license)

Status: code verified, 15 files readable, 9 matches

[17] Code ↔ Paper doi:10.1371/journal.pgen.1012126 [paper, repository]

FM-GPT: Bayesian fine mapping for phenome-wide transcriptome-wide association studies.

Journal: PLoS genetics

Authors' code: tacanida/fm-gpt (no license)

Status: code verified, 10 files readable, 2 matches

[18] Code ↔ Paper doi:10.1371/journal.pone.0357448 [paper, repository]

Anatomy-aware, label-informed approach improves image registration for challenging datasets.

Journal: PloS one

Authors' code: raroston/labelImageRegistration_Comparison (no license)

Status: code verified, 8 files readable, 3 matches

Monday, 7 September 2026 (1 paper)

[19] Code ↔ Paper doi:10.1093/braincomms/fcag343 [paper, repository]

Long-term brain volume trajectories and lifestyle associations in cognitively normal adults: the BRAIN-STRIDE study.

Journal: Brain communications

Authors' code: Zenodo 20819668 (MIT)

Status: code verified, 4 files readable, 4 matches

Sunday, 6 September 2026 (1 paper)

[20] Code ↔ Paper doi:10.1016/j.nicl.2026.104057 [paper, repository]

Tensor-derived diffusion MRI metrics and NODDI in multiple sclerosis classification.

Journal: NeuroImage. Clinical

Authors' code: Zenodo 20512670 (CC-BY-4.0)

Status: code verified

Saturday, 5 September 2026 (2 papers)

[21] Code ↔ Paper doi:10.3390/diagnostics16172861 [paper, repository]

Microstructural Changes in the Corpus Callosum in Different Forms of Sporadic Age-Related Cerebral Small Vessel Disease.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: mikhail-matrosov/classibundler (no license)

Status: code verified, 15 files readable, 2 matches

[22] Code ↔ Paper doi:10.1002/epi4.70336 [paper, repository]

Quantifying extra-lesional interhemispheric cortical asymmetry in focal cortical dysplasia type II.

Journal: Epilepsia open

Authors' code: faezeheidari/FCD_Asymmetry (MIT)

Status: code verified, 3 files readable, 2 matches

Friday, 4 September 2026 (2 papers)

[23] Code ↔ Paper doi:10.1038/s41398-026-04426-3 [paper, repository]

Resting-state brain age is associated with cognitive and sensorimotor abnormalities in schizophrenia spectrum disorders: a validation & longitudinal study.

Journal: Translational psychiatry

Authors' code: rpomponio/neuroHarmonize (MIT)

Status: code verified, 12 files readable, 1 match

[24] Code ↔ Paper doi:10.1007/s00429-026-03172-y [paper, repository]

Differential effects of acute, chronic, and social defeat stress on microglial morphology in the basolateral and central amygdala, and the medial and lateral habenula.

Journal: Brain structure & function

Authors' code: Jorvalgl/Thresholderer (GPL-3.0)

Status: code verified, 2 files readable

Tuesday, 1 September 2026 (18 papers)

[25] doi:10.1111/jon.70146 [paper]

Pitfalls in 2HG Detection With TE-Optimized MRS at 3T.

Journal: Journal of neuroimaging : official journal of the American Society of Neuroimaging

Status: code on request

[26] doi:10.1111/cbdd.70396 [paper, data]

Integrated Multi-Omics and Radiogenomic Analysis Identifies S100B and ITGB5 as Complementary Candidate Biomarkers of Glioblastoma Heterogeneity.

Journal: Chemical biology & drug design

Status: code on request, 1 dataset cited

[27] Code ↔ Paper doi:10.1001/jamanetworkopen.2026.33507 [paper, repository]

Illness Severity and Longitudinal Gray Matter Volumes Among People With Major Depressive Disorder.

Journal: JAMA network open

Authors' code: OSF rcfq7 (no license)

Status: empty repository

[28] Code ↔ Paper doi:10.1016/j.jmro.2026.100225 [paper, repository]

Feasibility, image quality, and analytic usability of mobile 64 mT ultra-low-field MRI for infant brain imaging at 3 and 12 months in southern Malawi.

Journal: Journal of magnetic resonance open

Authors' code: UNITY-Physics (no license)

Status: code verified

[29] Code ↔ Paper doi:10.1002/alz.71822 [paper, repository]

SynthPET: A 3D generative AI approach for FDG-PET image synthesis from T1-weighted MRI and ASL CBF in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: adni.loni.usc.edu/data-samples/access-data (no license)

Status: dead link

[30] doi:10.1111/ejn.70668 [paper, data]

Regional Organisation and Sex-Related Differences in Trigeminal Nerve DTI Metrics in Healthy Young Adults.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[31] Code ↔ Paper doi:10.1016/j.nicl.2026.104053 [paper, repository]

Childhood white matter organization predicts adolescent internalizing problems among youth with and without ADHD.

Journal: NeuroImage. Clinical

Authors' code: chydeDeakin/Hyde_et_al_2026 (no license)

Status: code verified, 1 file readable

[32] Code ↔ Paper doi:10.1093/cercor/bhag132 [paper, repository]

Spatiotemporal white-matter development across early childhood.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: MervSingh/alongtract_fba_wm_dev (no license)

Status: code verified, 67 files readable, 6 matches

[33] Code ↔ Paper doi:10.1162/imag.a.1342 [paper, repository]

Hyperpolarized <sup>13</sup>C-bicarbonate production correlates with excitatory neuron distribution in the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 20575695 (CC-BY-4.0), brinuthayakumar/hpmr-genetranscript_imagingneuroscience (no license)

Status: code verified, 19 files readable, 3 matches

[34] Code ↔ Paper doi:10.1002/hbm.70627 [paper, repository]

Investigating the Contribution of Molecular-Enriched Functional Connectivity to Brain-Age Analysis.

Journal: Human brain mapping

Authors' code: ottaviadipasquale/react-fmri (MIT)

Status: code verified, 5 files readable

[35] doi:10.1002/alz.71811 [paper]

Female vulnerability to microvascular transport dysfunction emerges early across the Alzheimer's disease continuum.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[36] Code ↔ Paper doi:10.1002/hbm.70608 [paper, repository]

Transient Elevation and Subsequent Normalization of Brain Age Gap During the Postpartum Period.

Journal: Human brain mapping

Authors' code: chang-hyun.park/postpartum-brain-age-prediction (MIT)

Status: code verified, 3 files readable, 3 matches

[37] Code ↔ Paper doi:10.1002/hbm.70635 [paper, repository]

Cerebral Cortical Structural Variation and General Cognitive Ability: Evidence From Mendelian Randomization.

Journal: Human brain mapping

Authors' code: jianyang-lab/gsmr (no license)

Status: code verified, 6 files readable, 1 match

[38] doi:10.1002/brb3.71666 [paper, data]

Principal Components Analysis Relates Hippocampal Trisynaptic Circuit to Vividness of Visual Mental Imagery.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[39] Code ↔ Paper doi:10.1002/hipo.70124 [paper, repository]

Association Between Anterior Hippocampal Gyrification and Episodic Memory Performance in Neurotypical Young Adults.

Journal: Hippocampus

Authors' code: khanlab/hippunfold (MIT), mic-dkfz/nnunet (Apache-2.0)

Status: code verified, 259 files readable, 2 matches

[40] Code ↔ Paper doi:10.1002/nbm.70368 [paper, repository]

Intra-MRI Head Motion Tracking and Correction: A Quantitative In Vivo Evaluation Framework.

Journal: NMR in biomedicine

Authors' code: zzariry/pyMocoKit (MIT)

Status: code verified, 17 files readable

[41] Code ↔ Paper doi:10.1093/aje/kwag135 [paper, repository]

Depressive symptoms and neuroimaging markers of brain aging in an ethno-racially diverse sample: a Bayesian analysis.

Journal: American journal of epidemiology

Authors' code: SpatialHealth/KHANDLE-STAR_Depression_MRI (no license)

Status: code verified, 18 files readable, 1 match

[42] Code ↔ Paper doi:10.1093/brain/awag032 [paper, repository]

A rostral prefrontal mediolateral gradient predicts creativity in frontotemporal dementia.

Journal: Brain : a journal of neurology

Authors' code: OSF rtnzw (no license)

Status: code verified, 7 files readable, 2 matches

Monday, 31 August 2026 (4 papers)

[43] doi:10.1038/s41597-026-08133-y [paper, data]

A neuroimaging atlas of the nigrosomes in the substantia nigra based on 3D histology.

Journal: Scientific data

Status: data only, 1 dataset cited

[44] Code ↔ Paper doi:10.1007/s10237-026-02121-2 [paper, repository]

Dynamic image-informed selection of biomechanical tumor growth models.

Journal: Biomechanics and modeling in mechanobiology

Authors' code: PCELab/RecursiveGliomaInference (no license)

Status: code verified, 5 files readable, 1 match

[45] doi:10.3390/diagnostics16172806 [paper]

Brain Tumor Segmentation and Grading on MRI Using Deep Learning: A Systematic Literature Review and Benchmark-Driven Comparative Analysis.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request

[46] doi:10.3389/fmed.2026.1905061 [paper, data]

Performance trade-offs between dense prediction and sparse query mechanisms for brain tumor MRI detection: a comparative study of YOLOv8 and RT-DETR.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

Saturday, 29 August 2026 (3 papers)

[47] Code ↔ Paper doi:10.1016/j.ebiom.2026.106457 [paper, repository]

Balancing privacy and performance: the impact of facial defacing on AI in medical imaging.

Journal: EBioMedicine

Authors' code: YuliWanghust/deface_nih (no license)

Status: empty repository, 1 file readable

[48] Code ↔ Paper doi:10.1038/s41598-026-68393-x [paper, repository]

Volumetric reference data of the orbit: a deep learning MRI analysis in the German national cohort.

Journal: Scientific reports

Authors' code: reisert/eye_model (no license)

Status: empty repository, 1 file readable

[49] Code ↔ Paper doi:10.1093/braincomms/fcag311 [paper, repository]

Multimodal quantitative MRI finds early brain changes in asymptomatic X-linked adrenoleukodystrophy.

Journal: Brain communications

Authors' code: helms-man/MTsat-processing-FSL (CC0-1.0)

Status: code verified, 7 files readable

Thursday, 27 August 2026 (2 papers)

[50] Code ↔ Paper doi:10.1212/wnl.0000000000218472 [paper, repository]

Lesion-Level Subtypes of White Matter Hyperintensity Evolution Beyond Spatial Location.

Journal: Neurology

Authors' code: rglezgz/WMH-subtypes (no license)

Status: code verified, 8 files readable, 9 matches

[51] doi:10.1186/s12987-026-00865-8 [paper, data]

Brain parenchyma deformation and strain in patients with spontaneous intracranial hypotension.

Journal: Fluids and barriers of the CNS

Status: data only, 3 datasets cited

Wednesday, 26 August 2026 (5 papers)

[52] Code ↔ Paper doi:10.1212/wnl.0000000000218519 [paper, repository]

EOAD-Signature Atrophy Predicts Dementia in Early-Onset MCI due to Alzheimer Disease: An MRI-Based Prognostic Biomarker.

Journal: Neurology

Authors' code: thiagoparanhos/EOAD-prognostication (no license)

Status: code verified, 6 files readable, 3 matches

[53] doi:10.1016/j.neuroimage.2026.122186 [paper]

Aging, brain network connectivity, and cognition: evidence from resting-state dynamic arterial spin labeling.

Journal: NeuroImage

Status: code on request

[54] Code ↔ Paper doi:10.1016/j.nicl.2026.104052 [paper, repository]

Beyond one-to-one mappings: Modelling distributed lesion-symptom relationships with multilayer networks.

Journal: NeuroImage. Clinical

Authors' code: jdax34/scripts_article (no license)

Status: code verified, 11 files readable, 8 matches

[55] doi:10.3389/fimmu.2026.1805464 [paper, data]

Chronic low-grade inflammation, genetic susceptibility, and the risk of multiple sclerosis: a prospective cohort study.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[56] Code ↔ Paper doi:10.3390/s26175388 [paper, repository]

Self-Supervised Stacked Masked Denoising Autoencoder (S<sup>2</sup>MDAE) for Brain MRI Denoising and Feature Learning.

Journal: Sensors (Basel, Switzerland)

Authors' code: limou66/S2MDAE (no license)

Status: code verified, 5 files readable, 5 matches

Tuesday, 25 August 2026 (1 paper)

[57] doi:10.1038/s41598-026-49678-7 [paper]

Clinical validation pipeline of a deep learning model for segmenting and quantifying intracranial and ventricular volumes on computed tomography.

Journal: Scientific reports

Status: code on request

Monday, 24 August 2026 (1 paper)

[58] doi:10.1038/s41598-026-60525-7 [paper, data]

Superfast prediction of brain tumours through adaptive incremental pre-training and re-training through transfer learning using state-of-the-art ResNet18 architectural model.

Journal: Scientific reports

Status: data only, 1 dataset cited

Saturday, 22 August 2026 (2 papers)

[59] Code ↔ Paper doi:10.1186/s13244-026-02365-7 [paper, repository]

Super-resolution MRI and 2.5D deep learning for intratumoral-peritumoral radiomics in preoperative prediction of rectal cancer perineural invasion.

Journal: Insights into imaging

Authors' code: OnekeyAI-Platform/onekey (no license)

Status: code verified, 62 files readable, 3 matches

[60] Code ↔ Paper doi:10.3390/jcm15176501 [paper, repository]

Saliency-Curated Deep Learning for Predicting Receptor Status in Breast Cancer Brain Metastases.

Journal: Journal of clinical medicine

Authors' code: Const1357/BCBM-RadioGenomics-Classifier (no license)

Status: code verified, 17 files readable, 12 matches

Friday, 21 August 2026 (2 papers)

[61] Code ↔ Paper doi:10.64898/2026.08.18.26360725 [paper, repository]

Temporal pole blurring in hippocampal sclerosis reflects seizure-disrupted myelination

Journal: medRxiv (preprint)

Authors' code: MELDProject/meld_graph (other), AliAfsharmoqaddam/NeoHipp (MIT)

Status: code verified, 124 files readable, 3 matches

[62] Code ↔ Paper doi:10.1093/braincomms/fcag320 [paper, repository]

MRI derived hippocampal asymmetry identifies hippocampal sclerosis in epilepsy surgical specimens.

Journal: Brain communications

Authors' code: phindagijimana.github.io/neuroinsight_landing_web (no license)

Status: code verified

Wednesday, 19 August 2026 (3 papers)

[63] doi:10.1016/j.ebiom.2026.106438 [paper]

Brain network biomarkers for diagnosis and clinical stratification in multiple sclerosis: a longitudinal study integrating individualised structural covariance MRI with high-density EEG.

Journal: EBioMedicine

Status: code on request

[64] Code ↔ Paper doi:10.1038/s41593-026-02363-4 [paper, repository]

Cortical thickness changes precede high levels of amyloid by at least 7 years.

Journal: Nature neuroscience

Authors' code: jamesmroe/yearsBeforeAB (MIT)

Status: code verified, 17 files readable, 6 matches

[65] Code ↔ Paper doi:10.1162/imag.a.1341 [paper, repository]

Massively parallelized brain tractography using compute clusters, supercomputers, and graphics processing units.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gitlab.inria.fr/cronos/software/tractography (no license), cronos-inria/Tractography.jl (MIT), karanaggarwal1994/life-opt (BSD-3-Clause), arcosuc3m/phardi (GPL-3.0), shashankgugnani/encode (no license), andachamamci/CATractography (GPL-3.0), robbert-harms/MDT (LGPL-3.0), SPMIC-UoN/cudimot (other), daducci/commit (other), jzxu0622/mati (BSD-2-Clause), framagit.org/cpoupon/gkg (other), CHrlS98/aodf-toolkit (MIT), codeocean:7377624 (no license)

Status: code verified, 2,879 files readable, 18 matches

Tuesday, 18 August 2026 (4 papers)

[66] Code ↔ Paper doi:10.1371/journal.pone.0356382 [paper, repository]

Evaluating the impact of segmentation strategies on radiomic feature stability for paediatric brain tumour diagnosis using diffusion weighted imaging.

Journal: PloS one

Authors' code: tmulvanyAC/ADC_Radiomic_Stability (no license)

Status: code verified, 2 files readable, 1 match

[67] Code ↔ Paper doi:10.1093/braincomms/fcag316 [paper, repository]

Structural, functional and neurochemical imaging mapping of non-motor symptoms in Parkinson's disease.

Journal: Brain communications

Authors' code: chiaracamastra/Coordinate-based-network-mapping (no license)

Status: empty repository, 1 file readable

[68] doi:10.3390/biology15161423 [paper]

Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer's Disease Continuum: Cross-Sectional and Progression-Related Associations.

Journal: Biology

Status: code on request

[69] doi:10.3390/life16081356 [paper, data]

Regional Brain Volume Variation Across Adulthood: A Cross-Sectional MRI Analysis of Age, Sex, and Hemispheric Asymmetry.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

Monday, 17 August 2026 (1 paper)

[70] Code ↔ Paper doi:10.1093/braincomms/fcag317 [paper, repository]

Deep learning segmentation of paediatric brain tumours using diffusion-weighted MRI: towards an early, <i>in vivo</i> classification pipeline.

Journal: Brain communications

Authors' code: tmulvanyAC/DWI_DeepMedic (no license)

Status: code verified, 1 file readable

Saturday, 15 August 2026 (1 paper)

[71] Code ↔ Paper doi:10.3390/cancers18162636 [paper, repository]

Exploring the Impact of T2-Weighted MRI Fat Saturation on Radiomics Stability for Brain Radionecrosis Prediction After Skull-Base Proton Therapy: A Pilot Study.

Journal: Cancers

Authors' code: sithin-cnao/t2w_stability (GPL-3.0)

Status: code verified, 17 files readable, 10 matches

Friday, 14 August 2026 (3 papers)

[72] Code ↔ Paper doi:10.64898/2026.08.13.26359403 [paper, repository]

NeuroMorph: A Unified Morphological Reference Space for Cross-Disease Brain Profiling

Journal: medRxiv (preprint)

Authors' code: rockNroll87q/NeuroMorph (no license)

Status: dead link

[73] Code ↔ Paper doi:10.1162/imag.a.1337 [paper, repository]

Data quality biases normative models derived from fetal brain MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: fetpype/fetpype (MIT), fetpype/normative_modeling_data_quality (no license), Zenodo 15696638 (CC-BY-4.0)

Status: code verified, 42 files readable, 8 matches

[74] doi:10.3389/fonc.2026.1806663 [paper, data]

A denoising autoencoder-enhanced ResNet 50 framework for explainable brain tumor classification using MRI.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

Thursday, 13 August 2026 (4 papers)

[75] Code ↔ Paper doi:10.1523/eneuro.0407-25.2026 [paper, repository]

Connectome-Guided Personalization of Optimal TDCS Intervention Selection in Alzheimer's Disease: A Modeling Study.

Journal: eNeuro

Authors' code: CornelisStam/BrainWave (no license)

Status: empty repository, 1 file readable

[76] doi:10.64898/2026.08.12.26360241 [paper, data]

Diffusion kurtosis imaging (gen)omics unravels mechanisms of cerebral small vessel disease

Journal: medRxiv (preprint)

Status: data only, 1 dataset cited

[77] Code ↔ Paper doi:10.1093/braincomms/fcag309 [paper, repository]

Neurovascular effects of tadalafil in patients with cerebral small vessel disease: ETLAS-2 substudy.

Journal: Brain communications

Authors' code: Zenodo 19233779 (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[78] Code ↔ Paper doi:10.1038/s41467-026-76812-w [paper, repository]

Assessing molecular, cellular and transcriptomic bases of laminar perfusion and cytoarchitecture coupling in the human cortex.

Journal: Nature communications

Authors' code: FanhuaGuo/ASL-Bigbrain-CCSI (MIT), Zenodo 21363179 (MIT)

Status: code verified, 70 files readable, 15 matches

Wednesday, 12 August 2026 (2 papers)

[79] Code ↔ Paper doi:10.1126/sciadv.aee2305 [paper, repository]

Prediction of mild cognitive impairment progression using time-sensitive multimodal biomarkers.

Journal: Science advances

Authors' code: Zenodo 19897907 (MIT), openpreventad.loris.ca (no license), mcgill.ca/bic/neuroinformatics (no license), ggsegverse/ggseg (other), Zenodo 19411014 (CC-BY-4.0), jogaru1818/progression_to_mci (no license), villeneuvelab/vlpp (MIT)

Status: code verified, 132 files readable, 11 matches

[80] doi:10.3389/fnins.2026.1908548 [paper, data]

Multimodal DeepSurv model with SHAP-based interpretation for predicting local failure in patients with brain metastases undergoing hypofractionated stereotactic radiotherapy.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

Tuesday, 11 August 2026 (3 papers)

[81] Code ↔ Paper doi:10.7554/elife.107661 [paper, repository]

In vivo mapping of striatal neurodegeneration in Huntington's disease with Soma and Neurite Density Imaging.

Journal: eLife

Authors' code: palombom/SANDI-Matlab-Toolbox-Latest-Release (BSD-2-Clause)

Status: code verified, 90 files readable, 6 matches

[82] Code ↔ Paper doi:10.1093/braincomms/fcag303 [paper, repository]

Sleep spindles are linked to white matter connectivity differentially in older adults with and without cognitive impairment.

Journal: Brain communications

Authors' code: OSF uy7jk (no license)

Status: code verified, 1 file readable, 2 matches

[83] Code ↔ Paper doi:10.1016/j.eclinm.2026.104143 [paper, repository]

Intensive versus standard blood pressure control and overall brain small vessel disease burden: a post-hoc analysis of the SPRINT randomized clinical trial.

Journal: EClinicalMedicine

Authors' code: UTHSCSA-NAL/SPRINT_SVD (no license)

Status: code verified, 2 files readable, 7 matches

Monday, 10 August 2026 (1 paper)

[84] Code ↔ Paper doi:10.21037/qims-2026-0792 [paper, repository]

An nnU-Net-based framework with adaptive feature representation for 3D brain tumor segmentation.

Journal: Quantitative imaging in medicine and surgery

Authors' code: DIAGNijmegen/nnUNet_v2 (Apache-2.0)

Status: code verified, 199 files readable, 8 matches

Saturday, 8 August 2026 (2 papers)

[85] Code ↔ Paper doi:10.1016/j.tjpad.2026.100646 [paper, repository]

Quantifying generalization error in machine learning prediction of cognitive decline.

Journal: The journal of prevention of Alzheimer's disease

Authors' code: rhuepp/gemacode (MIT)

Status: code verified, 4 files readable, 4 matches

[86] Code ↔ Paper doi:10.1038/s41598-026-64405-y [paper, repository]

Evaluating clinical and neuroimaging predictors for cognitive-behavioral therapy outcome in obsessive-compulsive disorder.

Journal: Scientific reports

Authors' code: ritterlab/EPOC_outcome_prediction (no license)

Status: code verified, 47 files readable, 10 matches

Friday, 7 August 2026 (1 paper)

[87] Code ↔ Paper doi:10.1162/imag.a.1328 [paper, repository]

A robust and reproducible automated MRI pipeline for quantifying tissue outcomes after experimental stroke in multi-center preclinical networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: cabeen/span-mri (other)

Status: code verified, 37 files readable, 13 matches

Thursday, 6 August 2026 (4 papers)

[88] Code ↔ Paper doi:10.1162/imag.a.1322 [paper, repository]

Fine-scale individualized gyral folding-based cortical similarity networks reveal distinct organizational patterns in Alzheimer's disease and Lewy body dementia.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: m1nhengChen/Gyral-Folding-Network (MIT)

Status: code verified, 6 files readable, 9 matches

[89] Code ↔ Paper doi:10.3389/fonc.2026.1886395 [paper, repository]

Resources are associated with functional outcome and brain morphometry in childhood cancer survivors.

Journal: Frontiers in oncology

Authors' code: SCAN-NRAD/DL-DiReCT (BSD-3-Clause)

Status: code verified, 15 files readable, 2 matches

[90] doi:10.3389/fcvm.2026.1859362 [paper, data]

The association between reduced hypothalamic subregion volume and aortic aneurysm risk: a Mendelian randomization and multi-omics study with clinical MRI validation.

Journal: Frontiers in cardiovascular medicine

Status: data only, 1 dataset cited

[91] Code ↔ Paper doi:10.3389/frai.2026.1891883 [paper, repository]

RN-D<sup>3</sup>: detection, differentiation, and delineation of radiation necrosis on post-contrast MRI.

Journal: Frontiers in artificial intelligence

Authors' code: chamseddine-lab/rn-d3 (other)

Status: code verified, 14 files readable, 2 matches

Wednesday, 5 August 2026 (7 papers)

[92] Code ↔ Paper doi:10.1016/j.ebiom.2026.106400 [paper, repository]

Data-driven trajectories of atrophy explain clinical heterogeneity across Lewy body diseases.

Journal: EBioMedicine

Authors' code: ucl-usyd-transcend.github.io (no license)

Status: code verified

[93] Code ↔ Paper doi:10.1016/j.bpr.2026.100280 [paper, repository]

Morphometric analysis reveals that the chick cranial neural tube expands as an active shell.

Journal: Biophysical reports

Authors' code: nchahare/spatchcocking (MIT)

Status: code verified, 23 files readable, 16 matches

[94] doi:10.1038/s41598-026-63915-z [paper, data]

A novel hybrid transformer-based framework (H-ConvNeXt-Swin) to classify brain tumors using MRI.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[95] Code ↔ Paper doi:10.1080/20002297.2026.2705667 [paper, repository]

Oral microbiota dysbiosis related to the cortical thinning and cognitive impairment in cerebral small vessel disease.

Journal: Journal of oral microbiology

Authors' code: zhuozhizheng/Chinese_normative_reference_and_downstream_clinical_applications (no license)

Status: code verified, 29 files readable, 1 match

[96] doi:10.3390/s26154963 [paper, data]

NeuroSPFNet: Vision-Language Semantic Prior-Guided Frequency-Enhanced Network for Brain Tumor Segmentation in Multimodal MRI.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[97] doi:10.1093/braincomms/fcag300 [paper]

Assessing CT-based volumetric analysis via deep learning for idiopathic normal pressure hydrocephalus.

Journal: Brain communications

Status: code on request

[98] Code ↔ Paper doi:10.1038/s41467-026-76306-9 [paper, repository]

Non-invasive characterization of perivascular subarachnoid spaces.

Journal: Nature communications

Authors' code: ninafultz/csf_donuts (no license)

Status: code verified, 131 files readable, 7 matches

Tuesday, 4 August 2026 (4 papers)

[99] Code ↔ Paper doi:10.1002/mrm.70496 [paper, repository]

A Deep Nonlinear Subspace Modeling and Reconstruction for Diffusion-Weighted Imaging Using Denoising Auto-Encoder.

Journal: Magnetic resonance in medicine

Authors' code: ZhengguoTan/sigpy (BSD-3-Clause), JuliusGlaser/LASER (no license)

Status: code verified, 144 files readable, 5 matches

[100] doi:10.1038/s41598-026-61891-y [paper, data]

A class-wise quantum relational calibration network for brain tumor diagnosis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[101] Code ↔ Paper doi:10.1162/imag.a.1325 [paper, repository]

Decoding everyday levels of musical training from subcortical white-matter architecture.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MassimoLumaca/neuroARC (no license), MassimoLumaca/neuroTraining (no license)

Status: code verified, 15 files readable, 7 matches

[102] Code ↔ Paper doi:10.1162/imag.a.1326 [paper, repository]

RAVEN: Robust, generalizable, multi-resolution structural MRI upsampling using autoencoders.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: richzhang/PerceptualSimilarity (BSD-2-Clause), waadgo/raven (MIT)

Status: code verified, 363 files readable, 9 matches

Monday, 3 August 2026 (3 papers)

[103] doi:10.1007/s00415-026-14034-2 [paper, data]

Similarities and differences in the late-onset GM2 gangliosidoses: Tay-Sachs and Sandhoff diseases.

Journal: Journal of neurology

Status: data only, 8 datasets cited

[104] doi:10.1016/j.isci.2026.117015 [paper]

Dynamic functional connectivity variability may explain hypoxia-induced cognitive impairment at high-altitude.

Journal: iScience

Status: code on request

[105] doi:10.3389/fneur.2026.1879894 [paper]

Perivascular diffusion and white matter free water improve identification of cognitive impairment in cerebral small vessel disease.

Journal: Frontiers in neurology

Status: code on request

Saturday, 1 August 2026 (10 papers)

[106] Code ↔ Paper doi:10.1002/nbm.70349 [paper, repository]

Susceptibility Source Separation Unveils Paramagnetic and Diamagnetic Trajectories in Healthy Brains From 5 to 90 Years.

Journal: NMR in biomedicine

Authors' code: SNU-LIST/chi-separation (no license), SNU-LIST/chi_sepnet (other), AMRI-Lab/APART-QSM (no license)

Status: code verified, 23 files readable, 4 matches

[107] doi:10.1002/alz.71651 [paper]

Longitudinal effects of physical activity on sleep in association with hippocampal-amygdala subfield structure and functional connectivity in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[108] doi:10.1002/hbm.70629 [paper, data]

Characterising the Diffusion Functional Signature of Negative BOLD With Interleaved TMS-fMRI in the Human Brain.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[109] doi:10.1002/cns.71043 [paper]

Multimodal Neuroimaging-Based Machine Learning Models Leveraging Cerebral Morphometry and Glymphatic Parameters Predict Short-Term Post-Programming STN-DBS Motor Response in Parkinson's Disease.

Journal: CNS neuroscience & therapeutics

Status: code on request

[110] Code ↔ Paper doi:10.1002/brb3.71667 [paper, repository]

Exploring Gray Matter Alterations in Post-Stroke Patients: A Structural Covariance Analysis.

Journal: Brain and behavior

Authors' code: JLhos-fmri/BrainCovarianceConnectToolkitV2.1 (GPL-3.0)

Status: code verified, 189 files readable

[111] doi:10.1111/acel.70659 [paper]

Effects of Physical Activity on Brain White Matter Integrity Are Region-, Dose-, and Age-Dependent: Findings From the Population-Based Rhineland Study.

Journal: Aging cell

Status: code on request

[112] Code ↔ Paper doi:10.1002/mp.70599 [paper, repository]

Accurate estimation of intravoxel incoherent motion parameters based on implicit neural representation.

Journal: Medical physics

Authors' code: Kent0n-Li/IVIM-INR (no license)

Status: code verified, 2 files readable, 4 matches

[113] Code ↔ Paper doi:10.1002/brb3.71581 [paper, repository]

Blunted Reward Responsiveness During Social Feedback: Associations with Peer Victimization and Anhedonia in Socially Anxious Adolescents.

Journal: Brain and behavior

Authors' code: daisylabhub/ARSA (no license)

Status: code verified, 6 files readable, 3 matches

[114] doi:10.1002/nbm.70355 [paper]

High-Resolution Diffusion Kurtosis Imaging of Hippocampus Subfields Across the Healthy Lifespan.

Journal: NMR in biomedicine

Status: code on request

[115] Code ↔ Paper doi:10.1002/nbm.70353 [paper, repository]

Automated Surface-Based Segmentation of Deep Gray Matter Regions Based on Diffusion Tensor Images Reveals Unique Age Trajectories Over the Healthy Lifespan.

Journal: NMR in biomedicine

Authors' code: LittleBrainLab/microbrain (MIT)

Status: code verified, 20 files readable, 6 matches

Friday, 31 July 2026 (4 papers)

[116] doi:10.3390/diagnostics16152428 [paper, data]

PCA-Enhanced Deep Features for Alzheimer's Disease Stage Classification with EFMM.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[117] doi:10.3389/fonc.2026.1834400 [paper, data]

BrainFusionNet: an attention-augmented deep convolutional framework with hybrid loss optimisation and test-time augmentation for multi-class brain tumour detection in magnetic resonance images.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[118] Code ↔ Paper doi:10.3389/fmed.2026.1875760 [paper, repository]

Adaptive multi-stage domain unlearning for white-matter lesion segmentation.

Journal: Frontiers in medicine

Authors' code: MIC-DKFZ/nnUNet (Apache-2.0), Pubec/nnunetv2-unlearning (Apache-2.0)

Status: code verified, 420 files readable, 3 matches

[119] doi:10.1186/s12888-026-08472-5 [paper]

Neuroscience-guided bilateral thalamic MRI deep learning for obstructive sleep apnea diagnosis: a dual-center translational study.

Journal: BMC psychiatry

Status: code on request

Thursday, 30 July 2026 (5 papers)

[120] doi:10.1038/s41597-026-07746-7 [paper, data]

A longitudinal resource for mapping interindividual variation in the aging connectome.

Journal: Scientific data

Status: data only, 1 dataset cited

[121] Code ↔ Paper doi:10.1038/s41593-026-02359-0 [paper, repository]

The cross-site reproducibility of MRI morphometric phenotypes in psychiatric disorders.

Journal: Nature neuroscience

Authors' code: NSBLab/reproducibility_grey_matter_differences_in_disorders (no license)

Status: code verified, 343 files readable, 6 matches

[122] Code ↔ Paper doi:10.1162/imag.a.1316 [paper, repository]

Longitudinal MRI template of the baboon brain from birth to adolescence.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: arnaudletroter/BABACOOL (no license)

Status: code verified, 23 files readable, 6 matches

[123] doi:10.3390/diagnostics16152407 [paper, data]

BG-YOLO11s: Boundary-Guided YOLO11 with Bézier Contour Augmentation for Brain Tumour Segmentation in T1-CE MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request, 1 dataset cited

[124] Code ↔ Paper doi:10.1038/s41398-026-04292-z [paper, repository]

Regional juxtacortical microstructural changes and gene expression provide insights into neurodegeneration in Alzheimer's disease.

Journal: Translational psychiatry

Authors' code: Sahuhu-Sun/Imaging-transcriptomics (no license)

Status: code verified, 5 files readable, 2 matches

Wednesday, 29 July 2026 (3 papers)

[125] doi:10.3390/diagnostics16152385 [paper, data]

POWDR: Pathology-Preserving Outpainting with Wavelet Diffusion for 3D MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[126] doi:10.3389/fnins.2026.1875642 [paper, data]

Convolutional neural networks in brain disease diagnosis: a unified review of Alzheimer's, Parkinson's, and brain tumor classification.

Journal: Frontiers in neuroscience

Status: data only, 7 datasets cited

[127] Code ↔ Paper doi:10.3389/fnbeh.2026.1878769 [paper, repository]

<i>ADAMTS18</i> as a candidate gene linking social stress and depression: a cross-species study in African wild dogs (<i>Lycaon pictus</i>) and humans.

Journal: Frontiers in behavioral neuroscience

Authors' code: ncbi/sra-tools (other)

Status: code verified, 1,652 files readable, 2 matches

Tuesday, 28 July 2026 (3 papers)

[128] Code ↔ Paper doi:10.1177/13872877261471049 [paper, repository]

Predicting future brain atrophy based on longitudinal MRI.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: MaryamHadji/Future-prediction (MIT)

Status: code verified, 14 files readable, 2 matches

[129] doi:10.1002/mrm.70512 [paper]

Regularized Joint Reconstruction and Slab Combination for Accelerated Three-Dimensional Multi-Slab Diffusion-Weighted Imaging Using Multi-Scale Energy Models.

Journal: Magnetic resonance in medicine

Status: code on request

[130] Code ↔ Paper doi:10.3389/fnins.2026.1795744 [paper, repository]

Structural brain alterations associated with brain age may link to social dysfunction in male adults with autism spectrum disorder.

Journal: Frontiers in neuroscience

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable, 1 match

Monday, 27 July 2026 (4 papers)

[131] Code ↔ Paper doi:10.1371/journal.pcbi.1014555 [paper, repository]

Body surface potential driven personalisation of electrophysiological digital twins in hypertrophic cardiomyopathy.

Journal: PLoS computational biology

Authors' code: stelong/GPErks (MIT), CEMRG-publications (no license), Slicer/Slicer (other), wasserth/TotalSegmentator (Apache-2.0), aneic/meshtool (GPL-3.0)

Status: code verified, 1,620 files readable

[132] Code ↔ Paper doi:10.1007/s00415-026-13884-0 [paper, repository]

Spatial analysis of paraneoplastic cerebellar degeneration in ovarian cancer with anti-Yo syndrome and SCA1.

Journal: Journal of neurology

Authors' code: tamelenak/pcd-spatial-analysis (no license)

Status: code verified, 6 files readable, 12 matches

[133] Code ↔ Paper doi:10.1162/imag.a.1317 [paper, repository]

Bayesian insights into exchange and restriction in gray matter diffusion MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mjallais/NEXI_SANDIX_uGUIDE (no license)

Status: code verified, 9 files readable, 1 match

[134] doi:10.1016/j.nicl.2026.104042 [paper, data]

Altered white matter network topology is associated with more profound language impairment in children with autism spectrum disorder.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

Sunday, 26 July 2026 (1 paper)

[135] doi:10.1186/s40708-026-00325-x [paper, data]

CAE-BrainNet: a statistically validated class-adaptive attention ensemble model for explainable brain tumor classification from MRI.

Journal: Brain informatics

Status: data only, 4 datasets cited

Friday, 24 July 2026 (1 paper)

[136] doi:10.1007/s00415-026-13999-4 [paper, data]

Right hemisphere involvement in intensive aphasia therapy outcomes: a multimodal neuroimaging concept study.

Journal: Journal of neurology

Status: data only, 1 dataset cited

Thursday, 23 July 2026 (2 papers)

[137] Code ↔ Paper doi:10.1002/advs.76596 [paper, repository]

DDSurfer: A Weakly-Supervised Dual-Stream Deep Learning Framework for Cortical Surface Reconstruction From Diffusion MRI.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: ChengjinLii/DDSurfer (no license), pnlbwh/pnlpipe (other)

Status: code verified, 96 files readable, 13 matches

[138] Code ↔ Paper doi:10.1002/mrm.70439 [paper, repository]

Group-Patch Joint Compression: Compressing Dynamic B<sub>0</sub> and Static RF Spatial Modulations Across k-Space Subregion Groups for Highly Accelerated MRI.

Journal: Magnetic resonance in medicine

Authors' code: Zenodo 20533698 (BSD-3-Clause), ruitianwater/GroupPatchJCS_v1.0 (BSD-3-Clause), harmonizedmri.github.io/projects (no license)

Status: code verified, 216 files readable, 10 matches

Wednesday, 22 July 2026 (7 papers)

[139] Code ↔ Paper doi:10.1371/journal.pcbi.1013441 [paper, repository]

Large vision model framework for automated C. elegans analysis: From static morphometry to dynamic neural activity.

Journal: PLoS computational biology

Authors' code: lillyguisnet/TWARDISv0.1 (MIT), huggingface.co/lillyguisnet/celegans-classifier-vit-h-14-finetuned (no license)

Status: code verified, 19 files readable, 13 matches

[140] doi:10.21203/rs.3.rs-10117408/v1 [paper]

Individualised mapping of living human brain mitochondria by MRI reveals signatures of bioenergetic defects.

Journal: Research Square (preprint)

Status: code on request

[141] Code ↔ Paper doi:10.1038/s41593-026-02358-1 [paper, repository]

Cerebral venous blood flow regulates intracerebral pressure and brain clearance via meningeal lymphatic vessels.

Journal: Nature neuroscience

Authors' code: Zenodo 17453925 (no license)

Status: code verified, 1 file readable

[142] Code ↔ Paper doi:10.1002/mrm.70488 [paper, repository]

Advancing the Volumetric Analysis of Ultra-Low-Field Brain MRI Using Image-to-Image Translation.

Journal: Magnetic resonance in medicine

Authors' code: peterjhsu/CycleGAN-3D-ULF (MIT)

Status: code verified, 19 files readable, 5 matches

[143] doi:10.1162/imag.a.1307 [paper]

Accelerated maturation of brain circuits and executive function in adolescents who experienced the COVID-19 pandemic.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[144] Code ↔ Paper doi:10.3390/bioengineering13070844 [paper, repository]

Mapping Neuroanatomical Heterogeneity of Brain Aging Within a Clinically Defined Aging Reference Cohort.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: zhijian-yang/SurrealGAN (MIT)

Status: code verified, 15 files readable, 2 matches

[145] Code ↔ Paper doi:10.1093/braincomms/fcag283 [paper, repository]

Enhancing brain age estimation with structural MRI and synthesized cerebral blood volume maps.

Journal: Brain communications

Authors' code: jzjomsky/DeepCBV-BrainAGE (no license)

Status: code verified, 7 files readable, 2 matches

Tuesday, 21 July 2026 (2 papers)

[146] Code ↔ Paper doi:10.1371/journal.pmed.1004860 [paper, repository]

Brain aging patterns among nine neurological disorders: A case-control study.

Journal: PLoS medicine

Authors' code: liangchuang11/Brain-age-prediction (no license), Zenodo 20743298 (CC-BY-4.0), liangchuang11/brain_age_de-identified-minimal_data (no license), Zenodo 20743260 (CC-BY-4.0)

Status: code verified, 156 files readable, 6 matches

[147] Code ↔ Paper doi:10.1016/j.nicl.2026.104039 [paper, repository]

The quest for the best: manual, atlas- and spatial prior-based delineation of locus coeruleus.

Journal: NeuroImage. Clinical

Authors' code: dmiolga/LC_delineation (no license)

Status: dead link

Monday, 20 July 2026 (4 papers)

[148] doi:10.1159/000553651 [paper, data]

Covert Embolic Brain Infarcts, Remote Cortical Thinning, and Cognitive Impairment in Atrial Fibrillation: An Analysis of the Swiss-AF Cohort.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[149] Code ↔ Paper doi:10.1038/s41592-026-03159-x [paper, repository]

Siibra: a software tool suite for realizing a Multilevel Human Brain Atlas from complex data resources.

Journal: Nature methods

Authors' code: siibra-python.readthedocs.io (no license), HumanBrainProject/hbp-spatial-backend (Apache-2.0), FZJ-INM1-BDA/siibra-tutorials (Apache-2.0), FZJ-INM1-BDA/siibra-python (Apache-2.0), FZJ-INM1-BDA/siibra-explorer (Apache-2.0), FZJ-INM1-BDA/siibra-api (Apache-2.0), apache.org/licenses (no license), Zenodo 21127648 (CC-BY-4.0)

Status: code verified, 1,317 files readable, 25 matches

[150] doi:10.1016/j.isci.2026.116623 [paper]

Clinical 2D MRI radiomics for infant brain age and trajectory modeling.

Journal: iScience

Status: code on request

[151] Code ↔ Paper doi:10.1162/netn.a.553 [paper, repository]

MIND versus MSN: A systematic evaluation of test-retest reliability and age sensitivity for T1-weighted structural similarity networks.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: younghoo/paper-scripts (MIT)

Status: code verified, 33 files readable, 5 matches

Saturday, 18 July 2026 (3 papers)

[152] Code ↔ Paper doi:10.1002/mrm.70514 [paper, repository]

Brain Clearance of Contrast Agent in Intravenous DCE-MRI Is Measurable and Cannot Be Explained by Clearance Across the BBB Alone.

Journal: Magnetic resonance in medicine

Authors' code: nimo-group/DCE-MRI-brain-clearance-2025 (no license)

Status: code verified, 6 files readable, 2 matches

[153] Code ↔ Paper doi:10.1007/s00429-026-03163-z [paper, repository]

Toward reliable thalamic segmentation: an evaluation of automated methods for structural MRI.

Journal: Brain structure & function

Authors' code: Zenodo 13918589 (CC-BY-NC-SA-4.0), arnaudletroter/7TAMIBrain (MIT)

Status: code verified, 3 files readable

[154] Code ↔ Paper doi:10.1038/s41380-026-03691-4 [paper, repository]

Breaking the norm: population-scale deviations of brain structure in depression and anxiety.

Journal: Molecular psychiatry

Authors' code: wiegertj/DeepNormativeModeling (GPL-3.0)

Status: code verified, 23 files readable, 15 matches

Friday, 17 July 2026 (4 papers)

[155] Code ↔ Paper doi:10.64898/2026.07.15.26357954 [paper, repository]

Portable Ultra-Low Field MRI Deep-Learning Algorithms for White Matter Lesion Segmentation Improve Accuracy and Reflect Clinical Disability in Multiple Sclerosis

Journal: medRxiv (preprint)

Authors' code: MIC-DKFZ/nnUNet (Apache-2.0)

Status: code verified, 225 files readable

[156] Code ↔ Paper doi:10.1126/sciadv.aed4944 [paper, repository]

Focused ultrasound blood-brain barrier opening reveals a paradoxical remote metabolic response in the primate brain.

Journal: Science advances

Authors' code: Zenodo 19188809 (apgl-v3)

Status: code verified, 4 files readable, 3 matches

[157] Code ↔ Paper doi:10.1093/pnasnexus/pgag245 [paper, repository]

Reduced integrity in the frontal aslant tract's premotor connections is associated with dysfluency severity in stuttering.

Journal: PNAS nexus

Authors' code: OSF jmb6f (no license)

Status: empty repository

[158] doi:10.1162/imag.a.1303 [paper, data]

Composite reaction time and variability correlate with whole-brain white-matter characteristics.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

Thursday, 16 July 2026 (3 papers)

[159] Code ↔ Paper doi:10.1038/s41467-026-75582-9 [paper, repository]

Biophysical modeling of anatomically realistic prenatal cortical folding development.

Journal: Nature communications

Authors' code: BioDMX-UGA/BiophysicalCorticalMorphogenesis (no license)

Status: code verified, 36 files readable, 4 matches

[160] Code ↔ Paper doi:10.1002/mrm.70507 [paper, repository]

Comparative Systematic Analysis of Gray Matter Biophysical Models on a Public Dataset.

Journal: Magnetic resonance in medicine

Authors' code: QuentinUhl/graymatter_swissknife (Apache-2.0)

Status: code verified, 71 files readable

[161] doi:10.3389/fnagi.2026.1767582 [paper]

Structural brain changes in the development of essential tremor: toward early diagnosis.

Journal: Frontiers in aging neuroscience

Status: code on request

Wednesday, 15 July 2026 (2 papers)

[162] Code ↔ Paper doi:10.7554/elife.109461 [paper, repository]

The effect of physical activity on brain structure and cognitive function in the population-based cohort of LIFE-Adult Study.

Journal: eLife

Authors' code: PolonaCa/PA_LIFE (AGPL-3.0)

Status: code verified, 5 files readable, 1 match

[163] doi:10.1371/journal.pone.0351667 [paper, data]

MamNet-PT: A Mamba-enhanced hybrid architecture with selective state-space modeling for uncertainty-aware brain tumor segmentation.

Journal: PloS one

Status: data only, 1 dataset cited

Tuesday, 14 July 2026 (5 papers)

[164] doi:10.1080/01652176.2026.2696026 [paper, data]

Canine brain imaging with a new low-field portable (0.05 T) MRI scanner: a pilot <i>in vivo</i> comparison to conventional 1.5 T.

Journal: The veterinary quarterly

Status: data only, 1 dataset cited

[165] Code ↔ Paper doi:10.1002/advs.202515913 [paper, repository]

Intravital Multimodal Imaging of Human Cortical Organoid Transplantation in a Mouse Model of Chronic Stroke.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: liangy10/MIPOT (no license)

Status: empty repository, 1 file readable

[166] doi:10.1371/journal.pone.0352353 [paper, data]

Deep convolutional GAN and hypernet-based neural architecture search for brain tumor diagnosis detection and classification.

Journal: PloS one

Status: data only, 1 dataset cited

[167] doi:10.3390/jcm15145508 [paper, data]

Region-Wise Bézier Intensity Augmentation for Domain-Generalized Brain Tumor Segmentation with a Mamba U-Net.

Journal: Journal of clinical medicine

Status: code on request, 1 dataset cited

[168] Code ↔ Paper doi:10.3389/fnins.2026.1843319 [paper, repository]

Humanized APOE mouse brain volume increases over age irrespective of sex and APOE genotype: implications for translational validity to the human.

Journal: Frontiers in neuroscience

Authors' code: CoBrALab/minc-toolkit-extras (other), CoBrALab/optimized_antsMultivariateTemplateConstruction (other)

Status: code verified, 60 files readable, 3 matches

Monday, 13 July 2026 (4 papers)

[169] doi:10.1007/s11682-026-01175-1 [paper]

Longitudinal surface-based morphometry reveals potential MRI biomarkers correlated with multidimensional brain health measures.

Journal: Brain imaging and behavior

Status: code on request

[170] Code ↔ Paper doi:10.1002/acn3.70469 [paper, repository]

Quantitative MRI Uncovers Subtle Cortical Damage in Myelin Oligodendrocyte Glycoprotein Antibody-Associated Disease.

Journal: Annals of clinical and translational neurology

Authors' code: petergoodin/myelin_map (no license)

Status: code verified, 4 files readable, 1 match

[171] Code ↔ Paper doi:10.1162/imag.a.1293 [paper, repository]

PANDA: Patch-based unsupervised deep learning for brain anomaly detection via age prediction in fetal MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: yingqihao2022/PANDA (MIT), birthlab/PANDA (MIT)

Status: code verified, 14 files readable, 2 matches

[172] Code ↔ Paper doi:10.1093/braincomms/fcag269 [paper, repository]

Distinct brain regions are affected by neurodevelopmental or pre-dementia changes in Down syndrome.

Journal: Brain communications

Authors' code: ricardomar/Lilia-journal-2026 (no license)

Status: code verified, 2 files readable

Friday, 10 July 2026 (3 papers)

[173] Code ↔ Paper doi:10.1126/sciadv.aec2348 [paper, repository]

Congenital blindness reduces myelination in human visual cortex.

Journal: Science advances

Authors' code: Zenodo 20395292 (CC-BY-4.0), Zenodo 1442584 (MIT), lenastroh/blindnessmyelination (no license)

Status: code verified, 25 files readable

[174] Code ↔ Paper doi:10.1038/s41591-026-04497-1 [paper, repository]

Health system learning enables generalist neuroimaging models.

Journal: Nature medicine

Authors' code: MLNeurosurg/neurovfm (MIT)

Status: code verified, 57 files readable, 15 matches

[175] Code ↔ Paper doi:10.1162/imag.a.1290 [paper, repository]

Calibration of MRI-based reference intervals to new samples.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: andy1764/ReForm (no license)

Status: code verified, 3 files readable, 1 match

Thursday, 9 July 2026 (6 papers)

[176] Code ↔ Paper doi:10.1002/epi4.70306 [paper, repository]

Transcriptional signatures of cortical morphometric variability in temporal lobe epilepsy.

Journal: Epilepsia open

Authors' code: pyls.readthedocs.io (no license)

Status: code verified

[177] Code ↔ Paper doi:10.1038/s41597-026-07676-4 [paper, repository]

A neuroimaging dataset combining movie-watching, eye-tracking, sensorimotor mapping, and cognitive tasks.

Journal: Scientific data

Authors' code: Zenodo 19471544 (BSD-3-Clause), levchenkoegor/movieproject2 (BSD-3-Clause)

Status: code verified, 118 files readable, 20 matches

[178] Code ↔ Paper doi:10.1002/mrm.70468 [paper, repository]

A Realistic In Silico Brain Phantom for Quantifying Susceptibility Anisotropy-Induced Error in Susceptibility Separation.

Journal: Magnetic resonance in medicine

Authors' code: neuropoly/Susceptibility-Separation-Phantom (MIT)

Status: code verified, 17 files readable, 5 matches

[179] doi:10.3389/fgene.2026.1814786 [paper, data]

Global-local feature fusion: a robust hybrid deep learning model for multiclass brain tumor classification with Grad-CAM++ interpretation.

Journal: Frontiers in genetics

Status: data only, 2 datasets cited

[180] Code ↔ Paper doi:10.3389/fnins.2026.1870124 [paper, repository]

An end-to-end pipeline for automated fetal brain segmentation and biometry from 3D SSFP MRI.

Journal: Frontiers in neuroscience

Authors' code: DrSussmanLab/fetal-brain-seg (no license)

Status: code verified, 229 files readable, 13 matches

[181] Code ↔ Paper doi:10.3389/fcell.2026.1833866 [paper, repository]

A discovery protein panel for brain predicted age discordance using MRI in neurologically healthy individuals.

Journal: Frontiers in cell and developmental biology

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

Wednesday, 8 July 2026 (1 paper)

[182] doi:10.1038/s44400-026-00115-6 [paper, data]

Brain age gradients as intermediate phenotypes linking plasma p-tau217 to cognition in community-dwelling older adults.

Journal: NPJ dementia

Status: code on request, 1 dataset cited

Tuesday, 7 July 2026 (1 paper)

[183] doi:10.1159/000553421 [paper, data]

Linking Affective Symptoms and Brain Morphology in Cocaine Use Disorder: An Integrated Network Approach.

Journal: European addiction research

Status: data only, 4 datasets cited

Monday, 6 July 2026 (9 papers)

[184] Code ↔ Paper doi:10.1007/s00234-026-04103-8 [paper, repository]

Enhanced detection of subtle cortical abnormalities in focal epilepsy using 7 T MRI surface-based models and graph neural networks.

Journal: Neuroradiology

Authors' code: MELDProject/meld_graph (other)

Status: code verified, 108 files readable, 6 matches

[185] Code ↔ Paper doi:10.1186/s40708-026-00316-y [paper, repository]

Generalizable and explainable deep learning for brain MRI: a multi-cohort evaluation of 3D architectures for age and sex prediction.

Journal: Brain informatics

Authors' code: jrad9921/RadBrainDL (no license)

Status: code verified, 7 files readable, 2 matches

[186] Code ↔ Paper doi:10.1016/j.ebiom.2026.106367 [paper, repository]

Linking maternal blood pressure with fetal cerebral haemodynamics and cortical growth in congenital heart disease.

Journal: EBioMedicine

Authors' code: FNNDSC (no license)

Status: code verified

[187] doi:10.1186/s13073-026-01702-1 [paper, data]

Tandem repeat polymorphisms are associated with brain structure: results of two large population-based studies.

Journal: Genome medicine

Status: data only, 2 datasets cited

[188] Code ↔ Paper doi:10.1016/j.isci.2026.116671 [paper, repository]

A high-resolution functional network-organized atlas of human superficial white matter from ultra-high-field diffusion MRI.

Journal: iScience

Authors' code: mushroomer1823/swm_atlas (no license), mushroomer1823/connectomic_cluster (no license)

Status: code verified, 54 files readable, 5 matches

[189] doi:10.3389/fncom.2026.1834764 [paper, data]

Topology-aware hybrid graph-transformer network for Alzheimer's disease diagnosis from structural magnetic resonance imaging.

Journal: Frontiers in computational neuroscience

Status: code on request, 1 dataset cited

[190] Code ↔ Paper doi:10.3389/fpsyt.2026.1837909 [paper, repository]

Preliminary testing of a prespecified liability architecture for autism: theory-guided pathogenetic triad models outperform strength-matched alternatives.

Journal: Frontiers in psychiatry

Authors' code: OSF sg8ad (no license)

Status: code verified, 7 files readable, 12 matches

[191] Code ↔ Paper doi:10.3389/fnimg.2026.1873040 [paper, repository]

A rapid streamline-based extension of Tractfinder for white matter tract segmentation.

Journal: Frontiers in neuroimaging

Authors' code: tractfinder/tractfinder (no license), fionaEyoung/tractfinder (no license)

Status: code verified, 14 files readable

[192] doi:10.1016/j.bpsgos.2026.100785 [paper, data]

Noninvasive Mapping of Striosome-Matrix Imbalance in Early Psychosis.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

Saturday, 4 July 2026 (4 papers)

[193] doi:10.1007/s10916-026-02436-8 [paper, data]

Security Analysis of a Federated Learning Framework for Medical Image-to-Image Translation.

Journal: Journal of medical systems

Status: data only, 1 dataset cited

[194] Code ↔ Paper doi:10.1016/j.dcn.2026.101775 [paper, repository]

Neonatal brain-age models in full- and preterm infants.

Journal: Developmental cognitive neuroscience

Authors' code: lukassnoek/mvca (MIT)

Status: code verified, 21 files readable

[195] Code ↔ Paper doi:10.1038/s41467-026-74957-2 [paper, repository]

Joint trajectories of brain atrophy, white matter hyperintensities and cognition quantify brain maintenance.

Journal: Nature communications

Authors' code: neuroprognosis/brain-maintenance-lgcm (GPL-3.0)

Status: code verified, 13 files readable, 1 match

[196] doi:10.1038/s41598-026-60334-y [paper, data]

Enhancing brain tumor detection through deep learning and explainable AI techniques.

Journal: Scientific reports

Status: data only, 2 datasets cited

Friday, 3 July 2026 (1 paper)

[197] Code ↔ Paper doi:10.1002/mrm.70497 [paper, repository]

Suppression of Oscillation and Ghosting in RF-Spoiled Gradient-Echo-Based Dynamic Imaging.

Journal: Magnetic resonance in medicine

Authors' code: Goldrmat/MRM_RF-phase-cycle-adapted-cine-averaging (no license)

Status: code verified, 6 files readable

Thursday, 2 July 2026 (3 papers)

[198] doi:10.1371/journal.pone.0344291 [paper, data]

Deep learning based two-way feature depiction model for brain tumor detection.

Journal: PloS one

Status: data only, 1 dataset cited

[199] Code ↔ Paper doi:10.1111/cge.70204 [paper, repository]

Phenotypic Characterization of Five Children With PACS1-NDD: Longitudinal Insights Into Development, Behavior, and Brain.

Journal: Clinical genetics

Authors' code: danizoeller/myMixed-ModelsTrajectories (no license)

Status: dead link

[200] Code ↔ Paper doi:10.1016/j.ynirp.2026.100377 [paper, repository]

Accelerated brain aging in Veterans with posttraumatic stress symptoms and mild traumatic brain injury.

Journal: Neuroimage. Reports

Authors' code: vishnubashyam/DeepBrainNet (no license)

Status: code verified, 4 files readable

Wednesday, 1 July 2026 (15 papers)

[201] doi:10.1093/brain/awaf432 [paper, data]

Global network and local vulnerabilities underlie brain atrophy across Parkinson's disease stages.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[202] doi: [paper, data]

Orientation-Aware Diffusion Super-Resolution for 3T-Like Fetal MRI from Routine 1.5T Scans.

Journal: Proceedings of machine learning research

Status: data only, 1 dataset cited

[203] Code ↔ Paper doi:10.1002/nbm.70331 [paper, repository]

Dipolar Order Mapping Based on Spin-Lock Magnetic Resonance Imaging.

Journal: NMR in biomedicine

Authors' code: zjgao-spin/Dipolar-order-mapping (MIT), MIC-DKFZ/TractSeg (Apache-2.0)

Status: code verified, 125 files readable, 13 matches

[204] doi:10.1038/s41598-026-59884-y [paper, data]

Brain-structural differences underlying dialect competence in the bilingual network.

Journal: Scientific reports

Status: data only, 1 dataset cited

[205] Code ↔ Paper doi:10.1002/alz.71630 [paper, repository]

Genetic architecture of the limbic white matter microstructure in aging and Alzheimer's Disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Zenodo 13863955 (CC-BY-4.0)

Status: code verified

[206] Code ↔ Paper doi:10.1002/alz.71649 [paper, repository]

Postmortem brain MRI reveals differential associations of subcortical and limbic volumes with cortical thinning and neurodegenerative pathologies.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Pulkit-Khandelwal/purple-mri (no license), Pulkit-Khandelwal/postmortem-subcortical-limbic-pathologies (no license)

Status: code verified, 74 files readable, 11 matches

[207] Code ↔ Paper doi:10.1111/jcmm.71280 [paper, repository]

Rapamycin Partially Reverts Cavernoma Endothelial Cell Phenotype and, When Combined With Lapatinib, Ameliorates Chronic Lesions.

Journal: Journal of cellular and molecular medicine

Authors' code: dvidmd/GSE298723_Differential_Gene_Expression_Analysis_Garcia_Colomer_et_al (no license)

Status: code verified, 12 files readable, 2 matches

[208] Code ↔ Paper doi:10.1093/braincomms/fcag254 [paper, repository]

Brain age gap as a diffusion MRI-based marker of traumatic brain injury-related brain changes and associated outcomes.

Journal: Brain communications

Authors' code: diciphr-lab (no license)

Status: code verified

[209] doi:10.1002/ejp.70331 [paper, data]

Structural and Functional Neuroimaging Findings in Fibromyalgia: A Systematic Review.

Journal: European journal of pain (London, England)

Status: data only, 1 dataset cited

[210] Code ↔ Paper doi:10.3389/fnagi.2026.1847611 [paper, repository]

APOE ε4-associated hippocampal atrophy trajectories across the Alzheimer's disease continuum: a systematic review, meta-analysis, and longitudinal validation.

Journal: Frontiers in aging neuroscience

Authors' code: wyqmath/admeta (no license)

Status: code verified, 4 files readable, 4 matches

[211] Code ↔ Paper doi:10.3389/fpain.2026.1850836 [paper, repository]

Diffusion tensor imaging in chronic tension-type headache.

Journal: Frontiers in pain research (Lausanne, Switzerland)

Authors' code: dicemt/DTI-NODDI (AGPL-3.0)

Status: code verified, 5 files readable

[212] doi: [paper, data]

Structural and Quantitative MRI Signal Features in Pediatric Focal Cortical Dysplasia: Clinical Relevance.

Journal: Physiological research

Status: data only, 2 datasets cited

[213] Code ↔ Paper doi:10.1093/schbul/sbag045 [paper, repository]

Cortical Iron and Mesostriatal Dopamine Function in Schizophrenia: A Positron Emission Tomography and Magnetic Resonance Imaging Study.

Journal: Schizophrenia bulletin

Authors' code: lukevano/KCL_Neuromelanin-MRI (CC-BY-NC-4.0)

Status: code verified, 4 files readable, 2 matches

[214] Code ↔ Paper doi:10.1162/nol.a.265 [paper, repository]

Structural Brain Correlates of Poor Reading Comprehension.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 2ng57 (no license)

Status: code verified, 1 file readable, 2 matches

[215] Code ↔ Paper doi:10.1002/trc2.70304 [paper, repository]

Thalamic volume alterations mediate glymphatic function and cognitive dysfunction in Alzheimer's disease.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: OSF wgtn7 (no license)

Status: code verified, 2 files readable, 5 matches

Tuesday, 30 June 2026 (3 papers)

[216] doi:10.1016/j.xpro.2026.104667 [paper, data]

Protocol for diffusion magnetic resonance imaging and tractography in ex vivo mouse models.

Journal: STAR protocols

Status: data only, 2 datasets cited

[217] Code ↔ Paper doi:10.1016/j.neurobiolaging.2026.06.012 [paper, repository]

Brain structure in the cingulate cortex and locus coeruleus in late life is associated with engagement in complex mental activities across the life span.

Journal: Neurobiology of aging

Authors' code: OSF 63ays (no license)

Status: code verified, 2 files readable, 3 matches

[218] doi:10.1016/j.isci.2026.116581 [paper]

Peripheral inflammation impairs glymphatic function, contributing to neurodegeneration in Alzheimer's disease.

Journal: iScience

Status: code on request

Monday, 29 June 2026 (7 papers)

[219] Code ↔ Paper doi:10.1136/svn-2025-004471 [paper, repository]

Characteristics of brain structural damage related to cerebral small vessel disease in general population with intracranial artery stenosis.

Journal: Stroke and vascular neurology

Authors' code: anniepan-pumc/TBSS-ICAS (MIT)

Status: code verified, 7 files readable, 2 matches

[220] Code ↔ Paper doi:10.1073/pnas.2604111123 [paper, repository]

Multiscale characterization of the human claustrum from histology to MRI.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: navonacalarco/Claustrum (CC-BY-4.0)

Status: code verified, 5 files readable, 2 matches

[221] Code ↔ Paper doi:10.1038/s41598-026-58789-0 [paper, repository]

Metaheuristic hyperparameter optimization of deep neural networks for demographic-aware autism spectrum disorder classification.

Journal: Scientific reports

Authors' code: mohammedaly-tech/Demographic-Aware-ASD-Classification).An (no license), Zenodo 20419300 (CC-BY-4.0), mohammedaly-tech/demographic-aware-asd-classification (other)

Status: code verified, 24 files readable, 1 match

[222] Code ↔ Paper doi:10.3389/fonc.2026.1816015 [paper, repository]

Modality-level attribution and redundancy-aware radiomics for MRI-based differentiation of melanoma and NSCLC brain metastases.

Journal: Frontiers in oncology

Authors' code: georgeDV2002/metastasis_radiomics (BSD-3-Clause)

Status: code verified, 25 files readable, 11 matches

[223] doi:10.3390/jimaging12070288 [paper, data]

GDNet: A Robust 2.5D Multimodal MRI Brain Tumor Segmentation Framework with EMA Stabilization and Tumor-Aware Sampling.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[224] Code ↔ Paper doi:10.3390/biomedicines14071475 [paper, repository]

ETDACVO: Structural-Fidelity-Aware Evolutionary Co-Optimization for Robust and Explainable Brain Tumor MRI Classification.

Journal: Biomedicines

Authors' code: IndrakumarK/Evolutionary-Co-Optimization-of-Data-Augmentation-and-Learning-Dynamics-for-BT-MRI-Classification (other)

Status: code verified, 47 files readable, 18 matches

[225] Code ↔ Paper doi:10.1093/braincomms/fcag253 [paper, repository]

Disease detection and classification in temporal lobe epilepsy: step-wise versus simultaneous AI decision models in a multisite neuroimaging study.

Journal: Brain communications

Authors' code: meta-pytorch/captum (BSD-3-Clause)

Status: code verified, 274 files readable, 4 matches

Saturday, 27 June 2026 (1 paper)

[226] Code ↔ Paper doi:10.1002/mrm.70490 [paper, repository]

Dependence of the Extra-Cellular Diffusion Coefficient on the Fractions of Neurites and Cell Bodies in Gray Matter.

Journal: Magnetic resonance in medicine

Authors' code: Connectome20 (no license)

Status: code verified

Friday, 26 June 2026 (4 papers)

[227] doi:10.1038/s41386-026-02471-6 [paper]

Investigating the effect of increased dopamine signaling on cerebral blood flow in Major Depressive Disorder: a double-blind randomized placebo-controlled study.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: code on request

[228] doi:10.1007/s10072-026-09188-w [paper, data]

Mapping integrated care for brain tumour-related epilepsy in the Italian RIN-IRCCS network.

Journal: Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology

Status: data only, 2 datasets cited

[229] Code ↔ Paper doi:10.1038/s41467-026-74515-w [paper, repository]

Advancing fair and explainable machine learning for neuroimaging dementia pattern classification in multi-racial and multi-ethnic populations.

Journal: Nature communications

Authors' code: UTHSCSA-NAL/explainable_and_fair_ML_for_ADRD (no license)

Status: code verified, 16 files readable, 8 matches

[230] doi:10.3390/ijms27135758 [paper, data]

Diffusion Tensor Imaging Along the Perivascular Space (DTI-ALPS) as a Neuroimaging Biomarker of Glymphatic Function in Neurodegenerative Diseases: A Systematic Review.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 25 June 2026 (2 papers)

[231] Code ↔ Paper doi:10.1186/s40359-026-05043-x [paper, repository]

Reinforcement learning-driven adaptive game therapy for cognitive impairment patients with improved vision transformer based detection model.

Journal: BMC psychology

Authors' code: kaggle.com/code/ahmedashrafahmed (no license)

Status: dead link

[232] doi:10.3389/frai.2026.1852196 [paper, data]

FuzzyFed-CNN: secure and explainable multimodal federated learning for early Alzheimer's diagnosis.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

Wednesday, 24 June 2026 (7 papers)

[233] Code ↔ Paper doi:10.1038/s43587-026-01149-4 [paper, repository]

The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome.

Journal: Nature aging

Authors' code: omics-x/BloodMetabolomics_Genes_Gut_Exposome (no license)

Status: code verified, 26 files readable, 22 matches

[234] Code ↔ Paper doi:10.1186/s12916-026-05014-4 [paper, repository]

Targeting the posterior thalamic hub: hemispheric-specific encoding of pain-depression comorbidity after hemorrhagic stroke.

Journal: BMC medicine

Authors' code: demianw/tract_querier (BSD-3-Clause)

Status: code verified, 39 files readable

[235] Code ↔ Paper doi:10.1016/j.ynirp.2026.100365 [paper, repository]

Analysis of acute stroke-like lesions in MELAS: Distribution, potential boundaries and spreading pattern.

Journal: Neuroimage. Reports

Authors' code: Marius1311/Non-negative-ICA (BSD-3-Clause), DlutMedimgGroup/Chinese-Brain-PET-Template (MIT)

Status: code verified, 15 files readable

[236] Code ↔ Paper doi:10.1093/braincomms/fcag235 [paper, repository]

Association between glymphatic dysfunction and glucose hypometabolism in chronic disorders of consciousness: a multimodal PET/MRI study.

Journal: Brain communications

Authors' code: gbarisano/alps (MIT)

Status: code verified, 3 files readable, 2 matches

[237] doi:10.3389/fneur.2026.1808769 [paper, data]

Pre-treatment structural brain biomarkers predict response to repetitive transcranial magnetic stimulation in subjective tinnitus.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[238] Code ↔ Paper doi:10.1093/braincomms/fcag238 [paper, repository]

Substantia Nigra MRI markers are lower in Alzheimer's disease and are linked to general cognitive function.

Journal: Brain communications

Authors' code: frikro/SN-Novelty-Brain-Comm (no license)

Status: code verified, 7 files readable

[239] Code ↔ Paper doi:10.3390/jimaging12070276 [paper, repository]

Hyperelastic Regularization for Near-Diffeomorphic Transformer-Based Brain MRI Registration.

Journal: Journal of imaging

Authors' code: Zzxmh/HypEReg-TransMorph (MIT), Zenodo 19888526 (MIT), Zenodo 20113717 (MIT)

Status: code verified, 287 files readable, 20 matches

Tuesday, 23 June 2026 (2 papers)

[240] Code ↔ Paper doi:10.1038/s41398-026-04189-x [paper, repository]

Decomposing neuroanatomical heterogeneity in depression: insights from an ENIGMA major depressive disorder working group study in 5146 individuals.

Journal: Translational psychiatry

Authors' code: lusemp/decomposing-neuroanatomical-heterogeneity-in-depression-preprocessing-harmonization-code- (no license)

Status: code verified, 2 files readable, 2 matches

[241] doi:10.1016/j.ynirp.2026.100375 [paper, data]

Deep learning-based identification of causative genes in lissencephaly using 3D-MRI volumetric datasets.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

Monday, 22 June 2026 (7 papers)

[242] Code ↔ Paper doi:10.1242/bio.062604 [paper, repository]

Cat brains age like humans: translating time shows pet cats live to be natural models for human aging.

Journal: Biology open

Authors' code: supp:PMC13382973/biolopen-15-062604-Dataset1.zip (no license), supp:PMC13382973/biolopen-15-062604-Dataset2.zip (no license), supp:PMC13382973/biolopen-15-062604-Dataset3.zip (no license), supp:PMC13382973/biolopen-15-062604-Dataset4.zip (no license)

Status: code verified, 3 files readable, 5 matches

[243] doi:10.1371/journal.pone.0349951 [paper, data]

Disentangling crossing fibers with advanced dMRI methods reveals bundle-specific degeneration across the visual system in asymmetric glaucoma.

Journal: PloS one

Status: data only, 1 dataset cited

[244] Code ↔ Paper doi:10.1371/journal.pone.0351953 [paper, repository]

GL-Net: A knowledge-guided Gaussian-gated and layered refinement network for 3D MRI segmentation of brain gliomas.

Journal: PloS one

Authors' code: Turing17/GL-Net (no license)

Status: empty repository, 1 file readable

[245] doi:10.1073/pnas.2530123123 [paper, data]

Individual differences in speech monitoring: Functional and structural correlates of delayed auditory feedback.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[246] Code ↔ Paper doi:10.1038/s41598-026-58491-1 [paper, repository]

Cross-attention guided explainable deep transformer model for multi-level classification of rare neurological disorders using MRI images.

Journal: Scientific reports

Authors' code: researcher010-debug/NeurologicalDisorderClassification (no license)

Status: code verified, 5 files readable, 3 matches

[247] Code ↔ Paper doi:10.1162/imag.a.1282 [paper, repository]

Metabolic syndrome severity and the energetic cost of brain network transitions: A normative modeling study of accelerated brain aging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: phs9416/UKB_MetS_NCT (no license)

Status: code verified, 13 files readable, 10 matches

[248] doi:10.3389/frai.2026.1849051 [paper, data]

Query-guided learning for efficient and interpretable multi-class brain tumor classification in MRI.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

Sunday, 21 June 2026 (2 papers)

[249] Code ↔ Paper doi:10.1007/s44192-026-00521-5 [paper, repository]

Associations between anterior hypothalamic subunits and ADHD and autistic traits revealed by deep learning MRI segmentation.

Journal: Discover mental health

Authors' code: BBillot/hypothalamus_seg (Apache-2.0)

Status: code verified, 39 files readable

[250] Code ↔ Paper doi:10.1038/s41598-026-56778-x [paper, repository]

Chiari malformation type 1 is associated with a smaller fourth ventricle volume - a multi-cohort replication study.

Journal: Scientific reports

Authors' code: jarodroland/FourthVentricleVolumeCM1 (no license), SCAN-NRAD/DL-DiReCT (BSD-3-Clause)

Status: code verified, 15 files readable, 1 match

Saturday, 20 June 2026 (2 papers)

[251] doi:10.1016/j.ajcnut.2026.101401 [paper]

Brain and physiological responses to flavored waters with different sweeteners: a randomized crossover study in healthy young adults.

Journal: The American journal of clinical nutrition

Status: code on request

[252] Code ↔ Paper doi:10.1038/s41467-026-73714-9 [paper, repository]

The genetic architecture of cortical similarity networks.

Journal: Nature communications

Authors' code: jrs95/geni.plots (GPL-3.0), Zenodo 7974716 (other-open), isebenius/mind (no license)

Status: code verified, 23 files readable, 5 matches

Friday, 19 June 2026 (3 papers)

[253] doi:10.1038/s41398-026-04168-2 [paper]

Multimodal predictors of spoken vocabulary development in autism: the role of early childhood brain and behavior.

Journal: Translational psychiatry

Status: code on request

[254] doi:10.1186/s12874-026-02911-3 [paper, data]

Widening participation in cognitive neuroscience: a mixed-methods study of age-related motivators, barriers and attitudes towards imaging methods.

Journal: BMC medical research methodology

Status: data only, 1 dataset cited

[255] doi:10.3389/fpsyt.2026.1848053 [paper, data]

Neuroanatomical substrates of perivascular space index: a morphometric and tractography study.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

Thursday, 18 June 2026 (4 papers)

[256] Code ↔ Paper doi:10.1017/s0033291726104838 [paper, repository]

Variations of structural-functional coupling in post-traumatic stress disorder are associated with underlying molecular and transcriptional features.

Journal: Psychological medicine

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 1 match

[257] doi:10.1080/07853890.2026.2662776 [paper, data]

Unveiling the cognitive fog in lung cancer patients: non-invasive exploration of blood-brain barrier disruption and brain structural changes.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[258] doi:10.1371/journal.pbio.3003861 [paper, data]

Learning engages transient and sustained cellular mechanisms in the human brain.

Journal: PLoS biology

Status: data only, 1 dataset cited

[259] Code ↔ Paper doi:10.1093/braincomms/fcag232 [paper, repository]

Dynamic multivariate patterns of brain structure-neuropsychiatric symptom associations in long COVID.

Journal: Brain communications

Authors' code: anaston/cca_pls_toolkit (GPL-3.0)

Status: code verified, 104 files readable

Wednesday, 17 June 2026 (3 papers)

[260] Code ↔ Paper doi:10.1080/07853890.2026.2685416 [paper, repository]

Pulmonary and cerebral damage in COVID-19 survivors: is there any association?

Journal: Annals of medicine

Authors' code: JoHof/lungmask (Apache-2.0), antonioguj/bronchinet (MIT), FAIR-Unipd/dsc-mri-toolbox (MIT)

Status: code verified, 140 files readable, 2 matches

[261] doi:10.1186/s12883-026-05085-z [paper, data]

The use of routinely collected structural neuroimaging to identify cognitive impairment in multiple sclerosis.

Journal: BMC neurology

Status: data only, 1 dataset cited

[262] Code ↔ Paper doi:10.1093/braincomms/fcag193 [paper, repository]

Acute and longitudinal magnetic resonance imaging abnormalities in antibody-mediated encephalitis.

Journal: Brain communications

Authors' code: nabilseery/Antibody-mediated-encephalitis-MRI-analysis-code (no license)

Status: code verified, 2 files readable

Tuesday, 16 June 2026 (2 papers)

[263] Code ↔ Paper doi:10.3348/kjr.2026.0103 [paper, repository]

Deep Learning-Based Automated Detection and Burden Assessment of Paramagnetic Rim Lesions on Quantitative Susceptibility Mapping in Patients With Multiple Sclerosis.

Journal: Korean journal of radiology

Authors' code: olnsnlyy/PRL_segmentation (no license)

Status: empty repository, 1 file readable

[264] Code ↔ Paper doi:10.3389/fnins.2026.1841093 [paper, repository]

Brain protein burden is related to intravoxel incoherent motion: PET-MR imaging study.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 20560360 (CC-BY-4.0), PostonLab/IVIM_fit (MIT)

Status: code verified, 52 files readable

Monday, 15 June 2026 (7 papers)

[265] Code ↔ Paper doi:10.1007/s00429-026-03129-1 [paper, repository]

Brain structure and function in Homo naledi.

Journal: Brain structure & function

Authors' code: Zenodo 20136569 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[266] Code ↔ Paper doi:10.1371/journal.pone.0351431 [paper, repository]

Revisiting the role of structural connectivity-based parcellation in thalamic nuclei segmentation: Benchmarking against recent state-of-the-art methods.

Journal: PloS one

Authors' code: Zenodo 20473971 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[267] Code ↔ Paper doi:10.1371/journal.pbio.3003856 [paper, repository]

Aging and metabolism contribute separately to brain-body health.

Journal: PLoS biology

Authors' code: netneurolab/Farahani_Age_Metabolism (no license), Zenodo 20412555 (CC-BY-4.0), physimals/HCP-asl (Apache-2.0), thomasyeolab/cbig (MIT)

Status: code verified, 2,089 files readable, 8 matches

[268] Code ↔ Paper doi:10.1038/s41598-026-52797-w [paper, repository]

Aging macaques bridge the translational gap in perivascular space biology.

Journal: Scientific reports

Authors' code: ohsu.edu/alzheimers-disease-research-center/data-resources (no license)

Status: code verified

[269] doi:10.1038/s41598-026-57930-3 [paper, data]

Accurately modeling resting-brain functional connectivity using hypergraph neural field-Fourier deep neural network.

Journal: Scientific reports

Status: data only, 1 dataset cited

[270] doi:10.1162/imag.a.1270 [paper, data]

Disentangling the unique associations of age, pubertal stage, and pubertal hormones with white matter microstructure in childhood and adolescence.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[271] doi:10.3390/s26123804 [paper, data]

A Centralized AI Lakehouse Framework for Brain Tumor MRI Classification and Segmentation, University KPI Forecasting, and Water Potability Prediction.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

Sunday, 14 June 2026 (2 papers)

[272] doi:10.1038/s41598-026-54109-8 [paper, data]

A computational model to describe multi-regional brain architecture during neurodegeneration in Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[273] Code ↔ Paper doi:10.1038/s41598-026-53279-9 [paper, repository]

Depression detection from multimodalities based on LeNet with hunter-geese optimization.

Journal: Scientific reports

Authors' code: kaggle.com/code/rizkyyk (no license)

Status: dead link

Saturday, 13 June 2026 (3 papers)

[274] Code ↔ Paper doi:10.1038/s41398-026-04157-5 [paper, repository]

Association of glymphatic function with 40-Hz neural oscillations, systemic metabolic markers, and cognitive performance in healthy aging adults: An EEG and MRI study.

Journal: Translational psychiatry

Authors' code: HALFpipe/HALFpipe (GPL-3.0)

Status: code verified, 462 files readable, 1 match

[275] Code ↔ Paper doi:10.1038/s41467-026-74274-8 [paper, repository]

Regional sex differences in human cortical anatomy vary in their morphometric bases and overlap with sex chromosomal and gonadal influences.

Journal: Nature communications

Authors' code: TheHyoLee/sex_differences_in_human_cortical_anatomy (no license)

Status: code verified, 9 files readable, 10 matches

[276] doi:10.1186/s13195-026-02110-8 [paper]

Cognitive, biomarker, and neuroimaging indices associated with traumatic encephalopathy syndrome across two independent athlete cohorts.

Journal: Alzheimer's research & therapy

Status: code on request

Friday, 12 June 2026 (5 papers)

[277] Code ↔ Paper doi:10.1002/epi.70296 [paper, repository]

Fully automated three-dimensional deep learning-based magnetic resonance imaging segmentation of brain cavities in epilepsy surgery.

Journal: Epilepsia

Authors' code: penn-cnt/DeepResection (no license), rfcasseb/resectvol_dl (BSD-3-Clause)

Status: code verified, 34 files readable

[278] Code ↔ Paper doi:10.1371/journal.pone.0351405 [paper, repository]

Unimodal vs. multimodal deep learning for non-invasive MGMT promoter methylation prediction in glioblastoma: A systematic evaluation on the BraTS 2021 dataset.

Journal: PloS one

Authors' code: kaggle.com/competitions/rsna-miccai-brain-tumor-radiogenomic-classification (no license), freddy-oulia/MGMT_Promoter_Methylation_Prediction (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[279] Code ↔ Paper doi:10.1212/wnl.0000000000218164 [paper, repository]

Race and Ethnicity, Hypertension, and Neuroimaging Markers of Brain Aging: A Causal Mediation Analysis in the HABS-HD Study.

Journal: Neurology

Authors' code: michelle-caunca/HABS_CM_RaceEthHTNImg (no license)

Status: code verified, 12 files readable, 3 matches

[280] Code ↔ Paper doi:10.1038/s41598-026-55397-w [paper, repository]

Fast surface reconstruction of human brain MRI: benchmarking deep-learning based morphometry tools.

Journal: Scientific reports

Authors' code: SCAN-NRAD/DL-DiReCT-V2 (BSD-3-Clause)

Status: code verified, 27 files readable, 1 match

[281] Code ↔ Paper doi:10.1016/j.isci.2026.116394 [paper, repository]

A dual space MRI radiomic network signature for risk stratification and subtyping of mild cognitive impairment.

Journal: iScience

Authors' code: bearsyep/iscience_R2SN_radiomics (no license)

Status: code verified, 1 file readable, 1 match

Thursday, 11 June 2026 (3 papers)

[282] doi:10.1159/000553009 [paper, data]

State-of-the-Art Imaging and Localization Assessment in Post-Operative Deep Brain Stimulation for Parkinson's Disease: A Review.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[283] doi:10.1162/imag.a.1251 [paper]

Detection of slowly expanding lesions in people with multiple sclerosis using MRI: A scoping review.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[284] Code ↔ Paper doi:10.1093/braincomms/fcag220 [paper, repository]

When pain becomes self: limbic-default mode network hyperconnectivity predicts microvascular decompression failure in trigeminal neuralgia.

Journal: Brain communications

Authors' code: Zenodo 19106465 (CC-BY-4.0)

Status: code verified, 8 files readable, 5 matches

Wednesday, 10 June 2026 (6 papers)

[285] Code ↔ Paper doi:10.1038/s41593-026-02289-x [paper, repository]

Cerebellar aging is spatially heterogeneous and supports cognitive resilience in later life.

Journal: Nature neuroscience

Authors' code: fdoleireuquillas/AgingCerebellum (no license)

Status: code verified, 1 file readable, 4 matches

[286] Code ↔ Paper doi:10.1038/s41531-026-01428-2 [paper, repository]

The degenerome-a novel streamline-wise approach for white matter integrity in neurodegeneration.

Journal: NPJ Parkinson's disease

Authors' code: reisert/globaltracking (no license), reisert/degenerome (no license)

Status: code verified, 102 files readable

[287] doi:10.1155/ijbi/5318118 [paper, data]

Brain Tumor Segmentation Using U-Net With ResNet50 Encoder for Enhanced MRI Analysis.

Journal: International journal of biomedical imaging

Status: data only, 2 datasets cited

[288] Code ↔ Paper doi:10.1016/j.ynirp.2026.100360 [paper, repository]

CIVET-Chimp: An automated pipeline for MRI-based cortical surface extraction in chimpanzees.

Journal: Neuroimage. Reports

Authors' code: visionandcognition/nhp-freesurfer (MIT), neurabenn/precon_all (MIT), CoBrALab/iterativeN4_multispectral (other)

Status: code verified, 41 files readable, 1 match

[289] doi:10.3390/diagnostics16121791 [paper, data]

An Explainable Multi-Scale Deep Learning Framework for Multi-Class Brain MRI Classification.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[290] Code ↔ Paper doi:10.3389/fncir.2026.1814667 [paper, repository]

A modular and flexible pipeline for intraoperative electrode reconstruction and localization in patients with brain lesions.

Journal: Frontiers in neural circuits

Authors' code: Center-For-Neurotechnology/BrainInterface3D (MIT), PerkLab/SlicerFreeSurfer (BSD-3-Clause), isl-org/MiDaS (MIT), cnr-isti-vclab/PyMeshLab (GPL-3.0)

Status: code verified, 202 files readable, 3 matches

Tuesday, 9 June 2026 (5 papers)

[291] Code ↔ Paper doi:10.21203/rs.3.rs-9914920/v1 [paper, repository]

Prediction of cognitive performance by demographics, sleep, and brain morphometry: machine learning findings from ENIGMA-Sleep Working Group

Journal: Research Square (preprint)

Authors' code: OSF nhbkq (no license), harveybi/ENIGMA-Sleep-Cognitive-Performance (MIT)

Status: code verified, 317 files readable, 17 matches

[292] doi:10.1038/s41598-026-57292-w [paper, data]

Beyond structural MRI: combined diffusion metric improve delineation of epileptogenic tissue in focal cortical dysplasia.

Journal: Scientific reports

Status: data only, 2 datasets cited

[293] Code ↔ Paper doi:10.1002/mrm.70469 [paper, repository]

Laterally Oscillating Trajectory for Undersampling Slices: LOTUS.

Journal: Magnetic resonance in medicine

Authors' code: cfmm/matlab/matmri (MIT), Zenodo 4495476 (CC-BY-4.0)

Status: code verified, 67 files readable, 10 matches

[294] doi:10.3389/fmed.2026.1849122 [paper, data]

An intelligent gradient-guided hybrid inpainting framework for brain MRI reconstruction and Alzheimer's disease classification in connected healthcare systems.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[295] doi:10.3390/jimaging12060255 [paper]

A Multimodal Dense Parallel Global Attention Mechanism for Brain Tumor Image Segmentation.

Journal: Journal of imaging

Status: code on request

Monday, 8 June 2026 (2 papers)

[296] doi:10.1038/s41597-026-07540-5 [paper, data]

A multimodal epilepsy dataset of paired 3-Tesla and 7-Tesla MRI and intracranial EEG.

Journal: Scientific data

Status: data only, 1 dataset cited

[297] Code ↔ Paper doi:10.1038/s41598-026-56387-8 [paper, repository]

Alterations in topological and dynamical parameters correlate with disease biomarkers and neuropsychological scores in prodromic stages of dementia.

Journal: Scientific reports

Authors' code: Anita-93/TVB_rww_tutorial (no license), wiki.ebrains.eu/bin/view (no license)

Status: code verified, 2 files readable, 1 match

Saturday, 6 June 2026 (1 paper)

[298] Code ↔ Paper doi:10.1186/s10194-026-02419-7 [paper, repository]

Transcriptional correlates of structure-function coupling plasticity in trigeminal neuralgia: unveiling the synaptic and metabolic associations.

Journal: The journal of headache and pain

Authors' code: starz0275/TN_SF_Code (no license)

Status: code verified, 4 files readable, 2 matches

Friday, 5 June 2026 (5 papers)

[299] Code ↔ Paper doi:10.1038/s41598-026-51531-w [paper, repository]

Multimodal age-dependent diffusion-MRI analysis of the neocortex in a rat model of cortical dysplasia.

Journal: Scientific reports

Authors' code: Biomedical-Imaging-Group/OrientationJ (GPL-3.0), paulinajv/Vertex-wise-LMM-analysis (no license), lconcha/Displasias (no license)

Status: code verified, 228 files readable, 5 matches

[300] doi:10.1002/epi.70254 [paper]

Use of artificial intelligence in magnetic resonance imaging across the epileptic patient's journey: A meta-analysis of four clinical applications.

Journal: Epilepsia

Status: code on request

[301] Code ↔ Paper doi:10.1038/s41398-026-04143-x [paper, repository]

Neighborhood opportunity, white matter, and cognition in a large pediatric neuroimaging study.

Journal: Translational psychiatry

Authors' code: neslihanyildizozhan/ABCD-COI (CC-BY-4.0), pnlbwh/dMRIharmonization (other), Zenodo 2584275 (CC-BY-4.0)

Status: code verified, 79 files readable, 8 matches

[302] doi:10.3390/diagnostics16111745 [paper, data]

Brain Tumor Classification and Segmentation in MR Images Using EfficientNet and U-Net++ Models.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

[303] doi:10.3390/diagnostics16111749 [paper, data]

A Dual-Branch Frequency-Aware Attention Framework for Rare Neurological Disease Classification from Brain MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

Thursday, 4 June 2026 (6 papers)

[304] doi:10.1038/s41598-026-55847-5 [paper, data]

Federated MobileNetV2 with ensemble meta-learning for privacy-preserving brain tumor classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[305] doi:10.1038/s41598-026-56165-6 [paper, data]

Assessment of neurotransmitter-related structural brain changes in borderline personality disorder: an MRI study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[306] doi:10.1017/s0033291726104711 [paper, data]

Cell-type and spatiotemporal transcriptional signatures of white matter morphometric similarity network alterations in major depressive disorder.

Journal: Psychological medicine

Status: data only, 1 dataset cited

[307] doi:10.1038/s41538-026-00914-4 [paper, data]

Green tea catechin EGCG attenuates hippocampal atrophy and cognitive impairment in obesity via autophagy signaling.

Journal: NPJ science of food

Status: data only, 1 dataset cited

[308] Code ↔ Paper doi:10.1038/s41598-026-55855-5 [paper, repository]

Byzantine robust federated learning for heterogeneous brain MRI using multisignal gradient fingerprinting and adaptive trust aggregation.

Journal: Scientific reports

Authors' code: mohammadkarami79/OptiGradTrust (MIT)

Status: code verified, 54 files readable, 32 matches

[309] Code ↔ Paper doi:10.1162/imag.a.1264 [paper, repository]

Data-driven subtyping and staging of ALS: A multicenter, longitudinal, deformation-based morphometry study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: BIC-MNI/minc-tools (other), VANDAlab/Preprocessing_Pipeline (no license), ucl-pond/pySuStaIn (MIT)

Status: code verified, 325 files readable, 6 matches

Wednesday, 3 June 2026 (4 papers)

[310] Code ↔ Paper doi:10.1371/journal.pone.0349778 [paper, repository]

Manga reading on paper vs. digital devices: Prospective effects on core and supportive integration processes in the brain.

Journal: PloS one

Authors' code: neuropowertools.org/neuropower/neuropowerstart (no license)

Status: code found, not verified yet

[311] Code ↔ Paper doi:10.1038/s41467-026-73996-z [paper, repository]

Genetic architecture of white matter microstructure captured by unsupervised deep representation learning of fractional anisotropy maps.

Journal: Nature communications

Authors' code: ZhiGroup/UDIP-FA (MIT), Zenodo 19739801 (CC-BY-4.0)

Status: code verified, 17 files readable, 22 matches

[312] Code ↔ Paper doi:10.1038/s41598-026-54446-8 [paper, repository]

Deep learning-based Desikan-Killiany parcellation of the brain using diffusion MRI.

Journal: Scientific reports

Authors' code: xmindflow/DKParcellationdMRI (Apache-2.0)

Status: code verified, 18 files readable, 6 matches

[313] Code ↔ Paper doi:10.3389/fnins.2026.1833695 [paper, repository]

Transcriptional signatures of the cortical morphometric similarity network gradient in left temporal lobe epilepsy with different seizure symptoms.

Journal: Frontiers in neuroscience

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 3 matches

Tuesday, 2 June 2026 (8 papers)

[314] Code ↔ Paper doi:10.1016/j.crmeth.2026.101473 [paper, repository]

AmygdalaGo-BOLT for boundary-aware segmentation of the human amygdala.

Journal: Cell reports methods

Authors' code: zuoxinian/ccs (GPL-2.0)

Status: code verified, 732 files readable, 2 matches

[315] doi:10.1007/s00062-026-01675-z [paper]

DICOM-Based Quantification of MRI Artifact from Auditory Implants: a Technical Note Comparing Bone-Conduction- and Cochlear Implants.

Journal: Clinical neuroradiology

Status: code on request

[316] Code ↔ Paper doi:10.1038/s41398-026-04072-9 [paper, repository]

Myo-inositol concentration in the medial prefrontal cortex is associated with changes in brain white matter microstructure in early psychosis.

Journal: Translational psychiatry

Authors' code: Mic-map/WMTI-Watson_Python (no license)

Status: code verified, 4 files readable, 2 matches

[317] Code ↔ Paper doi:10.1186/s40478-026-02252-8 [paper, repository]

Temporal dynamics of neuroplasticity and neurodegeneration in the central auditory system following noise-induced hearing loss: a multimodal imaging and histological study.

Journal: Acta neuropathologica communications

Authors' code: ChariteExpMri/rodentDtiConnectomics (no license), doi:10.12751/g-node.yx9wb4 (no license)

Status: code verified, 11 files readable, 2 matches

[318] Code ↔ Paper doi:10.1093/braincomms/fcag169 [paper, repository]

Clinicoanatomic localization of iron-rich gliosis in aphasic presentations of globular glial tauopathy.

Journal: Brain communications

Authors' code: picsl-ftdc-computational-pathology/ftdc_ggt_paper (no license)

Status: code verified, 2 files readable, 1 match

[319] Code ↔ Paper doi:10.1162/imag.a.1183 [paper, repository]

Learning-based segmentation of diffusion-weighted MR images with arbitrary <i>q</i>-space samplings.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: liziyu0929/DeepAnat (MIT), zhangfanmark/DDParcel (Unlicense), Deep-MI/DISCUSseg (Apache-2.0)

Status: code verified, 63 files readable, 11 matches

[320] doi:10.1016/j.ynirp.2026.100354 [paper]

AI-Powered MRI Radiomics and Deep Learning for Preoperative Prediction of Cavernous Sinus Invasion in Pituitary Adenomas: A Clinically Oriented Review of Current Evidence.

Journal: Neuroimage. Reports

Status: code on request

[321] doi:10.1016/j.ajcnut.2026.101350 [paper]

Early-Life Cumulative Intake of Ultra-Processed Foods and Subcortical Brain Volume at Age Six Years: A Prospective Cohort Study.

Journal: The American journal of clinical nutrition

Status: code on request

Monday, 1 June 2026 (28 papers)

[322] Code ↔ Paper doi:10.1093/brain/awaf413 [paper, repository]

Estimating the time course of biomarker changes in Alzheimer's disease.

Journal: Brain : a journal of neurology

Authors' code: larslau/progmod (no license)

Status: code verified, 3 files readable, 2 matches

[323] Code ↔ Paper doi:10.1109/tmi.2026.3664328 [paper, repository]

Axon Diameter Mapping From Myelin Water Diffusion MRI.

Journal: IEEE transactions on medical imaging

Authors' code: Connectome20/MyCaliber (MIT)

Status: code verified, 25 files readable, 16 matches

[324] Code ↔ Paper doi:10.1158/1078-0432.ccr-25-4419 [paper, repository]

Framework for Statistical Parametric Mapping of the Interactions between Glioblastoma Location, Treatment, Prognostic Variables, and Survival Using a Phase III Trial.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research

Authors' code: BTIL-UCLA/COX_open (Apache-2.0)

Status: code verified, 50 files readable, 3 matches

[325] Code ↔ Paper doi:10.1002/nbm.70276 [paper, repository]

Input Layer Regularization and Automated Regularization Hyperparameter Tuning for Myelin Water Estimation Using Deep Learning.

Journal: NMR in biomedicine

Authors' code: ShashankSule/ILR-for-MWF (no license)

Status: code verified, 17 files readable, 1 match

[326] Code ↔ Paper doi:10.1002/nbm.70296 [paper, repository]

Quantitative Susceptibility Mapping of the Cervical Spinal Cord at 3T and Application to Multiple Sclerosis.

Journal: NMR in biomedicine

Authors' code: gitlab.inria.fr/amasson/longiseg4ms (no license)

Status: dead link

[327] Code ↔ Paper doi:10.1002/nbm.70301 [paper, repository]

Reducing Variability in Deep Gray Matter QSM Using Differential ROI Referencing: A Phantom and In Vivo Evaluation.

Journal: NMR in biomedicine

Authors' code: HUFS-AIIMST/Differential-ROI-referencing-QSM (no license)

Status: empty repository, 1 file readable

[328] Code ↔ Paper doi:10.1002/nbm.70305 [paper, repository]

Reducing Noise Induced by Cardiac Pulsatility in Brain Maps of R<sub>2</sub>* and Magnetic Susceptibility Using Tailored k-space Sampling.

Journal: NMR in biomedicine

Authors' code: mchiew/grappa-tools (no license), fil-physics/MPM_QSM (GPL-3.0)

Status: code verified, 358 files readable, 2 matches

[329] Code ↔ Paper doi:10.1002/nbm.70277 [paper, repository]

Hierarchical Bayesian Modelling Improves Microstructural Parameter Mapping in Diffusion and Exchange MRI Data.

Journal: NMR in biomedicine

Authors' code: e-powell/hbm-matlab (MIT), e-powell/hbm-dmipy (MIT)

Status: code verified, 151 files readable, 10 matches

[330] Code ↔ Paper doi:10.1002/hbm.70546 [paper, repository]

ComBat-Predict Enhances Generalizability of Neuroimaging Models to New Sites.

Journal: Human brain mapping

Authors' code: andy1764/ComBatFamily (no license), ntustison/CrossLong (no license), brainchart/Lifespan (no license), Munchkin-233/ComBat-Predict_eval (no license)

Status: code verified, 100 files readable, 5 matches

[331] doi:10.1002/brb3.71515 [paper, data]

Structural Connectivity of Functionally Defined Episodic Memory Networks: A Large-Scale Connectome-Behavior Study.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[332] Code ↔ Paper doi:10.1177/0271678x261455452 [paper, repository]

Meningeal CSF transport varies across parasagittal dura subregions with age in humans.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: vmalis/TimeSLIP-CSF-transport (MIT)

Status: code verified, 70 files readable, 4 matches

[333] Code ↔ Paper doi:10.1186/s12880-026-02481-2 [paper, repository]

Deep learning-based neuroanatomical profiling reveals population-specific brain changes in multiple sclerosis: a large-scale Middle Eastern study.

Journal: BMC medical imaging

Authors' code: Mahdi-Bashiri/MS-DeepBrain-Study (MIT)

Status: code verified, 32 files readable, 23 matches

[334] Code ↔ Paper doi:10.1186/s40644-026-01052-6 [paper, repository]

Microstructure mapping with time-dependent diffusion MRI differentiates primary central nervous system lymphoma from glioblastoma.

Journal: Cancer imaging : the official publication of the International Cancer Imaging Society

Authors' code: zjuzzl/prostate_mri (MIT)

Status: code verified, 2 files readable

[335] Code ↔ Paper doi:10.1002/hbm.70548 [paper, repository]

Improved Multiscale Structural Mapping with Supervertex Vision Transformer for the Detection of Alzheimer's Disease Neurodegeneration.

Journal: Human brain mapping

Authors' code: labhai/MSSMplus (no license), adni.loni.usc.edu/wp-content/uploads (no license)

Status: code verified, 6 files readable, 1 match

[336] Code ↔ Paper doi:10.1002/hbm.70562 [paper, repository]

Distinct Physiological Mechanisms Drive Grey Matter Plasticity in Complex Versus Simple Sequence Learning.

Journal: Human brain mapping

Authors' code: neuralabc/Structural_Physiology_MSLplasticity (no license)

Status: code verified, 7 files readable, 7 matches

[337] Code ↔ Paper doi:10.1002/hbm.70553 [paper, repository]

Axon Diameter Mapping in the Living Human Brain with Ultra-High-Gradient Diffusion MRI at 500 mT/m Gradient Strength.

Journal: Human brain mapping

Authors' code: yixinma9/diffusion_preproc_C2 (no license), kschan0214/gacelle (GPL-3.0)

Status: code verified, 230 files readable, 5 matches

[338] Code ↔ Paper doi:10.1002/hbm.70519 [paper, repository]

Lifespan Trajectories of Asymmetry in White Matter Tracts.

Journal: Human brain mapping

Authors' code: masilab/asymmetry (no license)

Status: dead link

[339] Code ↔ Paper doi:10.1002/alz.71530 [paper, repository]

Differential associations of plasma biomarkers with Alzheimer's disease and small vessel disease: A multimodal imaging study.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: miac-research/MARS-WMH (other)

Status: code verified, 9 files readable

[340] doi:10.1002/hbm.70560 [paper, data]

Mitigating the Impact of MR Sequence Parameters: Increasing the Robustness of DL-Based Cortical Thickness Estimates.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[341] Code ↔ Paper doi:10.1002/hbm.70563 [paper, repository]

Network-Level Convergence of Adiposity-Related Gray Matter Alterations: A Coordinate-Based Connectome Mapping Meta-Analysis With Imaging Transcriptomics.

Journal: Human brain mapping

Authors' code: OSF spjzd (no license)

Status: empty repository

[342] Code ↔ Paper doi:10.1002/alz.71587 [paper, repository]

Vulnerability of the locus coeruleus-entorhinal cortex white matter tract in autosomal dominant Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: mrtrix.readthedocs.io (no license)

Status: code verified

[343] Code ↔ Paper doi:10.3389/fnins.2026.1817732 [paper, repository]

Evaluating reliability of automated quantitative brain morphometry from fetal T2-weighted MRI.

Journal: Frontiers in neuroscience

Authors' code: FNNDSC (no license)

Status: code verified

[344] Code ↔ Paper doi:10.1002/alz.71571 [paper, repository]

Vulnerability of anterior medial temporal lobe subregions to early tau-related neurodegeneration in Alzheimer's disease: Converging evidence from tau-PET and plasma p-tau217.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: pyushkevich/cmrep (GPL-3.0)

Status: code verified, 104 files readable

[345] doi:10.1093/cercor/bhag069 [paper, data]

Diencephalic integrity explains aspects of hippocampal amnesia.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[346] Code ↔ Paper doi:10.1002/hbm.70547 [paper, repository]

miniMORPH: A Morphometry Pipeline for Low-Field MRI in Infants.

Journal: Human brain mapping

Authors' code: UNITY-Physics/fw-minimorph (MIT)

Status: code verified, 13 files readable, 5 matches

[347] doi:10.1002/alz.71609 [paper, data]

Cortical gray-white matter contrast alterations precede amyloid-β positivity and macrostructural changes in older adults without dementia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 2 datasets cited

[348] Code ↔ Paper doi:10.1002/brb3.71559 [paper, repository]

The "Brain's Traffic Map" Reveals Neural Pathways Linked to Coronary Microvascular Dysfunction in Women.

Journal: Brain and behavior

Authors' code: ArzuHas/USFC (no license), Zenodo 13997197 (CC-BY-4.0)

Status: code verified, 8 files readable

[349] Code ↔ Paper doi:10.1093/cercor/bhag067 [paper, repository]

Language laterality and cognitive skills: does anatomy matter?

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: andrulyte/language-laterality-cognition (MIT)

Status: code verified, 8 files readable, 8 matches

Saturday, 30 May 2026 (1 paper)

[350] Code ↔ Paper doi:10.1002/mrm.70451 [paper, repository]

Atlas of Brain Glucose Metabolism Using Deuterium Metabolic Imaging at 3 T.

Journal: Magnetic resonance in medicine

Authors' code: figshare 31241707 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

Friday, 29 May 2026 (5 papers)

[351] Code ↔ Paper doi:10.1038/s41597-026-07350-9 [paper, repository]

An open multi-center MEG-EEG dataset for studying conscious visual perception.

Journal: Scientific data

Authors' code: cogitate-consortium/cogitate-experiment-code (MIT), cogitate-consortium/cogitate-msp1 (MIT)

Status: code verified, 266 files readable, 12 matches

[352] Code ↔ Paper doi:10.1038/s41598-026-55163-y [paper, repository]

Autism spectrum disorder identification using machine learning models on MRI data.

Journal: Scientific reports

Authors' code: Zenodo 20196663 (CC-BY-4.0), Suni-Jose/Autism-detection-using-MRI (MIT)

Status: code verified, 9 files readable, 11 matches

[353] Code ↔ Paper doi:10.1162/imag.a.1252 [paper, repository]

Does the brain's E:I balance really shape long-range temporal correlations? Lessons learned from 3T MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: WeberLab/EI_Hurst_Analysis (no license)

Status: code verified, 33 files readable, 9 matches

[354] Code ↔ Paper doi:10.3389/fneur.2026.1815799 [paper, repository]

Gray matter volume alterations in adolescents with ADHD are associated with cell type-specific transcriptional signatures.

Journal: Frontiers in neurology

Authors' code: chrisfilo/alleninf (BSD-3-Clause)

Status: code verified, 10 files readable, 1 match

[355] Code ↔ Paper doi:10.1093/radadv/umag025 [paper, repository]

OpenMAP-BrainAge: generalizable and interpretable brain age predictor from MRI.

Journal: Radiology advances

Authors' code: OishiLab/OpenMAP-BrainAge (no license)

Status: code verified, 42 files readable, 7 matches

Thursday, 28 May 2026 (7 papers)

[356] Code ↔ Paper doi:10.1038/s41398-026-04131-1 [paper, repository]

Multimodal phenotypic classification of generalized anxiety and panic using structural MRI data and psychosocial factors: machine learning results from the German National Cohort (NAKO) study.

Journal: Translational psychiatry

Authors' code: OSF wt9yf (no license)

Status: code verified, 7 files readable, 3 matches

[357] doi:10.1038/s42003-026-10377-8 [paper]

Placebo analgesia persistence: evaluating behavioural stability in repeated trials.

Journal: Communications biology

Status: code on request

[358] Code ↔ Paper doi:10.1038/s41598-026-55136-1 [paper, repository]

CAHA-Net: A novel MR image classification model based on DenseNet incorporating coordinate attention and hybrid augmentation.

Journal: Scientific reports

Authors' code: Jiajun-H/CAHA-Net (GPL-3.0)

Status: code verified, 53 files readable, 3 matches

[359] doi:10.1186/s12911-026-03551-9 [paper, data]

A multi-sequence MRI integration framework using SwinUNETR-v2 for multiple sclerosis lesion segmentation.

Journal: BMC medical informatics and decision making

Status: data only, 3 datasets cited

[360] doi:10.1186/s12974-026-03888-y [paper]

Integrated imaging and molecular profiling reveals APOE4-associated neurovascular and glial disruptions in young adult mice.

Journal: Journal of neuroinflammation

Status: code on request

[361] doi:10.12688/f1000research.181680.1 [paper, data]

An MR-Neuroimaging Study of Structural and Vascular Brain Networks in Elderly Adults with Obesity and Diabetes who Practice Structural Yoga.

Journal: F1000Research

Status: data only, 1 dataset cited

[362] Code ↔ Paper doi:10.3390/jimaging12060233 [paper, repository]

Brain Tumor Classification in MRI Images Using Combined Transfer Learning and Convolutional Neural Networks.

Journal: Journal of imaging

Authors' code: Maisamilens/brain-tumor-classification (no license)

Status: code verified, 3 files readable, 8 matches

Wednesday, 27 May 2026 (6 papers)

[363] Code ↔ Paper doi:10.1126/sciadv.aeb0404 [paper, repository]

MR-AIV reveals in vivo brain-wide fluid flow with physics-informed AI.

Journal: Science advances

Authors' code: jdtoscano94/MR-AIV (no license)

Status: code verified, 15 files readable, 1 match

[364] Code ↔ Paper doi:10.1038/s41467-026-73071-7 [paper, repository]

Brain maintenance biomarkers from structural and functional interactions in aging and neurodegeneration.

Journal: Nature communications

Authors' code: Rainmon2020/Cognitive-Reserve (no license)

Status: code verified, 6 files readable, 2 matches

[365] Code ↔ Paper doi:10.1038/s41467-026-72875-x [paper, repository]

Lifespan normative modeling of brain microstructure.

Journal: Nature communications

Authors' code: villalonreina/ENIGMA-DTI-Normative-Modeling (GPL-3.0), ENIGMA-git/ENIGMA-DTI-Normative-Modeling (GPL-3.0)

Status: code verified, 34 files readable, 4 matches

[366] Code ↔ Paper doi:10.1038/s41531-026-01414-8 [paper, repository]

Targeting based on patient-specific 7 Tesla MRI connectivity analysis improves deep brain stimulation for Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: dgobbi/vtk-dicom (BSD-3-Clause)

Status: code verified, 61 files readable, 5 matches

[367] Code ↔ Paper doi:10.1038/s41531-026-01384-x [paper, repository]

In-vivo iron mapping in patients with Parkinson's disease using deep learning-based susceptibility source separation MRI.

Journal: NPJ Parkinson's disease

Authors' code: SNU-LIST/chi-separation (no license)

Status: empty repository, 1 file readable

[368] Code ↔ Paper doi:10.1186/s12916-026-04948-z [paper, repository]

Putative glymphatic dysfunction links extracellular fluid dysregulation to white matter degeneration and clinical impairment in amyotrophic lateral sclerosis.

Journal: BMC medicine

Authors' code: gbarisano/alps (MIT)

Status: code verified, 3 files readable, 2 matches

Tuesday, 26 May 2026 (7 papers)

[369] Code ↔ Paper doi:10.1186/s12880-026-02434-9 [paper, repository]

Exploring the value of peritumoral brain zone for classification of two malignant brain tumors based on the MRI interpretable models.

Journal: BMC medical imaging

Authors' code: OnekeyAI-Platform (no license)

Status: code verified

[370] Code ↔ Paper doi:10.1186/s12916-026-04956-z [paper, repository]

Handgrip weakness is associated with motor cortex atrophy in rheumatoid arthritis: a cross-sectional study with a hand exercise intervention.

Journal: BMC medicine

Authors' code: KCL-BMEIS/NiftySeg (BSD-3-Clause)

Status: code verified, 65 files readable

[371] Code ↔ Paper doi:10.1162/imag.a.1241 [paper, repository]

Multispectral 7 Tesla MRI as a potential predictor of dopamine transporter deficiency in Parkinson's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mert-o/dat_prediction (MIT)

Status: code verified, 15 files readable, 9 matches

[372] Code ↔ Paper doi:10.1162/imag.a.1242 [paper, repository]

Stable individual differences dominate adult brain volume variation until later life.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: EdvardGrodem/brain-trajectories (no license)

Status: code verified, 10 files readable, 2 matches

[373] doi:10.1162/imag.a.1253 [paper, data]

Mapping the structural connections between the anterior cingulate cortex and the insula/ventrolateral prefrontal cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[374] Code ↔ Paper doi:10.1016/j.nicl.2026.104012 [paper, repository]

Structural-functional multilayer brain network properties and outcome of combined repetitive transcranial magnetic stimulation and psychotherapy for obsessive-compulsive disorder.

Journal: NeuroImage. Clinical

Authors' code: multinetlab-amsterdam/projects (MIT), multinetlab-amsterdam/data_analysis (MIT)

Status: code verified, 86 files readable, 5 matches

[375] Code ↔ Paper doi:10.1093/braincomms/fcag190 [paper, repository]

Quantitative susceptibility mapping reveals widespread brain iron abnormalities in sporadic patients with early-stage amyotrophic lateral sclerosis.

Journal: Brain communications

Authors' code: qsmxt.github.io/qsmxt (no license)

Status: code verified

Monday, 25 May 2026 (5 papers)

[376] Code ↔ Paper doi:10.1038/s41598-026-53337-2 [paper, repository]

Progression-guided spatiotemporal memory transformers for accurate and consistent longitudinal brain tumor segmentation.

Journal: Scientific reports

Authors' code: skbsangeetha/Progression-Guided-Spatiotemporal-Memory-Transformers-for-Brain-Tumor-Segmentation (no license)

Status: code verified, 15 files readable, 3 matches

[377] Code ↔ Paper doi:10.1002/mds.70355 [paper, repository]

Gray Matter Microstructure Measured Using Diffusion Imaging as a Biomarker of Severity in Lewy Body Diseases.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: AngelikaZa/GM_Microstructure (CC0-1.0)

Status: code verified, 12 files readable, 2 matches

[378] Code ↔ Paper doi:10.1111/jcpp.70178 [paper, repository]

What makes a lonely child: environmental, health, and multimodal neuroimaging correlates of prospective loneliness in the ABCD study.

Journal: Journal of child psychology and psychiatry, and allied disciplines

Authors' code: lonilab/abcd_prospective_loneliness (MIT)

Status: code verified, 28 files readable, 11 matches

[379] Code ↔ Paper doi: [paper, repository]

Diffusion-relaxation MRI as virtual histology: separable microstructural signatures of AD pathology in ex vivo human brain

Journal: Research square

Authors' code: pyushkevich/greedy (Apache-2.0), dan-benjamini/madco (no license)

Status: code verified, 854 files readable

[380] doi:10.3389/fpsyg.2026.1813590 [paper, data]

Alterations in cortical surface morphometry in fibromyalgia: a multi-parametric study.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

Sunday, 24 May 2026 (2 papers)

[381] Code ↔ Paper doi:10.1038/s41398-026-04078-3 [paper, repository]

Brain age prediction in generalized anxiety disorder using a convolutional neural network.

Journal: Translational psychiatry

Authors' code: coreyjr2/ENIGMA_BrainAge_GAD_structural (no license)

Status: empty repository

[382] Code ↔ Paper doi:10.1002/mrm.70446 [paper, repository]

TRACC-PHYSIO: Time-Domain Resolution-Aligned Cross-Correlation to Estimate PHYSIOlogical Coupling and Time Delays in Dynamic MRI.

Journal: Magnetic resonance in medicine

Authors' code: Wen-Imaging-Lab/TRACC_PHYSIO (MIT), Zenodo 18762411 (CC-BY-4.0), wright-adam/TRACC_PHYSIO (MIT)

Status: code verified, 28 files readable, 9 matches

Saturday, 23 May 2026 (1 paper)

[383] Code ↔ Paper doi:10.1016/j.nicl.2026.104007 [paper, repository]

A comparative study of deep learning for cortical lesion MRI segmentation with explainability analysis in multiple sclerosis.

Journal: NeuroImage. Clinical

Authors' code: Zenodo 3942042 (Apache-2.0), francescolr/ms-lesion-segmentation (Apache-2.0)

Status: code verified, 4 files readable

Friday, 22 May 2026 (7 papers)

[384] Code ↔ Paper doi:10.1186/s13244-026-02296-3 [paper, repository]

A pre-trained foundation model framework for multiplanar MRI classification of extramural vascular invasion and mesorectal fascia invasion in rectal cancer.

Journal: Insights into imaging

Authors' code: yumengzhang97/foundation-model-rectal-mri (Apache-2.0)

Status: code verified, 59 files readable, 12 matches

[385] Code ↔ Paper doi:10.1038/s41398-026-04130-2 [paper, repository]

White matter structure-function coupling in neonatal brain and its association with Autism-related traits in early childhood.

Journal: Translational psychiatry

Authors' code: zztute/WM-SFC (no license)

Status: code verified, 41 files readable, 4 matches

[386] doi:10.1007/s00415-026-13850-w [paper, data]

No link between piriform cortex subregion resection and seizure freedom in two cohorts with temporal lobe epilepsy.

Journal: Journal of neurology

Status: code on request, 2 datasets cited

[387] Code ↔ Paper doi:10.1162/imag.a.1235 [paper, repository]

Intracranial volume: To adjust or not to adjust? It is not a matter of if, but how.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: VANDAlab/Preprocessing_Pipeline (no license), AgingLab/tiv_adjustment_brzezinskirittner_2026 (no license)

Status: code verified, 63 files readable, 8 matches

[388] Code ↔ Paper doi:10.1016/j.isci.2026.116072 [paper, repository]

Surface-based brain age index reflects hematological impacts on cognitive development in children with beta-thalassemia major.

Journal: iScience

Authors' code: ZhuoshL/SurfGNN (no license)

Status: code verified, 13 files readable

[389] doi:10.3389/fnsys.2026.1766684 [paper, data]

Structural brain lesions and action observation therapy outcomes in unilateral cerebral palsy: an exploratory study.

Journal: Frontiers in systems neuroscience

Status: data only, 1 dataset cited

[390] Code ↔ Paper doi:10.3390/diagnostics16111588 [paper, repository]

Bridging Annotation Gaps: Hierarchical Self-Support Learning for Brain Tumor Segmentation.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: sqbqamar/HAGSS (no license)

Status: code verified, 18 files readable, 15 matches

Thursday, 21 May 2026 (9 papers)

[391] Code ↔ Paper doi:10.1038/s42003-026-10205-z [paper, repository]

Source-space EEG alpha activity reveals brain age gaps due to neurodegeneration and disparity.

Journal: Communications biology

Authors' code: CompNeuroLabUSS/Alpha_Brain_Clocks (no license)

Status: code verified, 2 files readable, 1 match

[392] Code ↔ Paper doi:10.1038/s41467-026-73262-2 [paper, repository]

Robust but independent sex differences in human brain function, structure, and behavior.

Journal: Nature communications

Authors' code: siyuanliu8/HCPsexdifferences (no license)

Status: code verified, 47 files readable, 22 matches

[393] Code ↔ Paper doi:10.1038/s41597-026-07421-x [paper, repository]

The Brain Imaging and Neurophysiology Dataset of large-scale multimodal neural data.

Journal: Scientific data

Authors' code: bdsp-core/BigBrainImagingDatabase (CC-BY-NC-4.0)

Status: code verified, 5 files readable, 4 matches

[394] doi:10.1038/s43856-026-01670-y [paper]

Region-specific vulnerability to vascular risk factors and modifiable protective influences on white matter hyperintensities.

Journal: Communications medicine

Status: code on request

[395] doi:10.1038/s41598-026-52658-6 [paper, data]

A multi-level attention CNN-transformer based framework for the detection of brain tumor using regional dual-score explainability.

Journal: Scientific reports

Status: data only, 1 dataset cited

[396] Code ↔ Paper doi:10.1186/s13195-026-02079-4 [paper, repository]

Predicting future dementia from routine clinical MRI and linked healthcare data.

Journal: Alzheimer's research & therapy

Authors' code: HicResearch/PICTURES-DementiaClassifier (MIT), Zenodo 13921331 (CC-BY-4.0), Zenodo 7089491 (CC-BY-4.0)

Status: code verified, 15 files readable, 5 matches

[397] Code ↔ Paper doi:10.64898/2026.05.18.26353539 [paper, repository]

The Hidden Architecture of Brain Structural Variability in 22q11.2 Deletion Syndrome: A Multi-site Study

Journal: medRxiv (preprint)

Authors' code: ENIGMA-git (no license)

Status: code verified

[398] Code ↔ Paper doi:10.1093/braincomms/fcag181 [paper, repository]

Neuroinflammation and white matter microstructure as mediators of cognitive deficits in offspring of parents with bipolar disorder.

Journal: Brain communications

Authors' code: lixiaoyue8922490/script (no license)

Status: empty repository

[399] Code ↔ Paper doi:10.1093/braincomms/fcag185 [paper, repository]

Functional and structural neuroplasticity of somatosensory system in hemiplegic cerebral palsy.

Journal: Brain communications

Authors' code: shsadra/Brain-Communications-2025 (no license)

Status: code verified, 2 files readable

Wednesday, 20 May 2026 (5 papers)

[400] Code ↔ Paper doi:10.1038/s41598-026-53726-7 [paper, repository]

Integrated anatomical and functional connectivity mapping in episodic migraine: a spectral graph theory approach.

Journal: Scientific reports

Authors' code: ggoncalo02/SpectralConnectivity (no license)

Status: code verified, 17 files readable, 2 matches

[401] doi:10.1186/s13195-026-02074-9 [paper]

Metabolic parameter variability, brain structure, perfusion, and cognition: a population-based study.

Journal: Alzheimer's research & therapy

Status: code on request

[402] Code ↔ Paper doi:10.7554/elife.108109 [paper, repository]

Multimodal MRI marker of cognition explains the association between cognition and mental health in the UK Biobank.

Journal: eLife

Authors' code: HAM-lab-Otago-University/UKBiobank (MIT)

Status: code verified, 14 files readable, 18 matches

[403] Code ↔ Paper doi:10.1371/journal.pmed.1004809 [paper, repository]

Brain morphology in Anorexia Nervosa and its subtypes: A multi-cohort study of individual participant data.

Journal: PLoS medicine

Authors' code: OSF xrjkf (no license)

Status: code verified, 45 files readable, 8 matches

[404] Code ↔ Paper doi:10.1016/j.dcn.2026.101742 [paper, repository]

Linking temporal dynamics of children's natural behavior to brain development.

Journal: Developmental cognitive neuroscience

Authors' code: nda.nih.gov/abcd (no license), OSF 5b6sd (no license)

Status: code verified, 4 files readable, 1 match

Tuesday, 19 May 2026 (7 papers)

[405] doi:10.1038/s41380-026-03641-0 [paper]

Cerebral cortical alterations in adolescent early-onset psychosis: a surface-based morphometry mega-analysis.

Journal: Molecular psychiatry

Status: code on request

[406] Code ↔ Paper doi:10.1038/s42003-026-10256-2 [paper, repository]

Diffusion MRI experimental design optimization for microstructure imaging.

Journal: Communications biology

Authors' code: downloads.cmrr.umn.edu/software (no license)

Status: code verified

[407] doi:10.1038/s41597-026-07461-3 [paper, data]

Multimodal ultra-high-field MRI, clinical, cognitive, and genetic profiles across the ALS-FTD spectrum.

Journal: Scientific data

Status: data only, 2 datasets cited

[408] Code ↔ Paper doi:10.1038/s42003-026-10276-y [paper, repository]

The cellular correlates and adolescent reorganisation of cortical myelination networks in the common marmoset.

Journal: Communications biology

Authors' code: edhutch1/marm_MIND (MIT), Zenodo 19758838 (MIT), TrangeTung/marmoset_gradient (no license), isebenius/MIND (no license)

Status: code verified, 190 files readable, 40 matches

[409] doi:10.1038/s41598-026-52615-3 [paper, data]

MANet: a multimodal attention convolutional neural network for brain tumor classification.

Journal: Scientific reports

Status: data only, 2 datasets cited

[410] Code ↔ Paper doi:10.1186/s12915-026-02635-2 [paper, repository]

Microbial enterotype is linked to episodic and working memories via brain function in the parietal and occipital cortices.

Journal: BMC biology

Authors' code: figshare 32190669 (CC-BY-4.0)

Status: code verified

[411] doi:10.3390/brainsci16050533 [paper, data]

Sparse Multivariate Analysis Reveals Dissociable White Matter Networks for Cognitive and Motor Processing Speed.

Journal: Brain sciences

Status: data only, 1 dataset cited

Monday, 18 May 2026 (3 papers)

[412] Code ↔ Paper doi:10.1007/s12149-026-02218-9 [paper, repository]

Whole-brain histogram analysis and top 20% gray and white matter ratio of amyloid positron emission tomography: A comparison with the centiloid scale.

Journal: Annals of nuclear medicine

Authors' code: MIC-DKFZ/HD-BET (Apache-2.0)

Status: code verified, 7 files readable

[413] Code ↔ Paper doi:10.1038/s43587-026-01121-2 [paper, repository]

Predicting categorical and continuous Alzheimer's disease outcomes from a single MRI scan.

Journal: Nature aging

Authors' code: Tencent/MedicalNet (MIT), darenma/MultitaskCognition (no license)

Status: code verified, 12 files readable

[414] Code ↔ Paper doi:10.3389/fnins.2026.1770672 [paper, repository]

Multivariate age-related variations in quantitative MRI maps: widespread age-related differences revisited.

Journal: Frontiers in neuroscience

Authors' code: CyclotronResearchCentre/qMRI_MSPM_AgeFx (GPL-2.0)

Status: code verified, 68 files readable, 7 matches

Friday, 15 May 2026 (1 paper)

[415] Code ↔ Paper doi:10.1038/s41467-026-73072-6 [paper, repository]

Mapping the spatiotemporal continuum of structural connectivity development across the human connectome in youth.

Journal: Nature communications

Authors' code: CuiLabCIBR/SCDevelopment (no license), Zenodo 19549943 (CC-BY-4.0)

Status: code verified, 52 files readable, 13 matches

Thursday, 14 May 2026 (5 papers)

[416] Code ↔ Paper doi:10.2463/mrms.mp.2024-0149 [paper, repository]

Image Distortion Correction for Diffusion MR Imaging Using a Transformer-based U-Net.

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Authors' code: MASILab/Synb0-DISCO (no license), junyuchen245/transmorph_transformer_for_medical_image_registration (MIT)

Status: code verified, 387 files readable, 6 matches

[417] doi:10.1111/pcn.70075 [paper, data]

Network-level disconnectivity tracks poststroke depressive symptom improvement.

Journal: Psychiatry and clinical neurosciences

Status: data only, 1 dataset cited

[418] doi:10.1038/s41598-026-50240-8 [paper, data]

High-precision brain tumor segmentation with switchable normalization in faster R-CNN architecture.

Journal: Scientific reports

Status: data only, 3 datasets cited

[419] doi:10.1038/s41598-026-51542-7 [paper, data]

Brain tumor classification using fractional Laplacian image enhancement and vision transformer.

Journal: Scientific reports

Status: data only, 1 dataset cited

[420] Code ↔ Paper doi:10.1002/mrm.70431 [paper, repository]

SelExNet: A Self-Supervised Physics-Informed Framework for Multi-Channel Joint RF and Gradient Waveform Optimization in 2D Spatially Selective Excitation.

Journal: Magnetic resonance in medicine

Authors' code: chiew-group/SelExNet (no license)

Status: code verified, 12 files readable, 4 matches

Wednesday, 13 May 2026 (9 papers)

[421] Code ↔ Paper doi:10.21203/rs.3.rs-9188548/v1 [paper, repository]

Automated Longitudinal MRI Assessments of Diffuse Midline Gliomas: A Large Multi-Institutional Study

Journal: Research Square (preprint)

Authors' code: rauschecker-sugrue-labs/DMG-Longitudinal (MIT)

Status: code verified, 15 files readable, 6 matches

[422] Code ↔ Paper doi:10.1186/s41747-026-00735-w [paper, repository]

Dual-conditioned diffusion model with anatomical guidance for geometric distortion correction in prostate MRI.

Journal: European radiology experimental

Authors' code: nainye/DeDistortNet (Apache-2.0)

Status: code verified, 7 files readable, 5 matches

[423] Code ↔ Paper doi:10.1126/sciadv.adz5324 [paper, repository]

High mannose content of mesenchymal glioblastoma correlates with hydroxyl proton transfer-weighted (HPTw) MRI as noninvasive biomarker of tumor aggressiveness.

Journal: Science advances

Authors' code: kennedykrieger.org/kirby-research-center/software-databases (no license)

Status: code verified

[424] doi:10.1007/s10162-026-01052-0 [paper, data]

White Matter Alterations Are More Robust Than Gray Matter Differences in Tinnitus and Hearing Loss: An MRI Study of Military Personnel.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Status: data only, 2 datasets cited

[425] Code ↔ Paper doi:10.1038/s41398-026-04081-8 [paper, repository]

Functional system-specific brain aging across the Alzheimer's disease continuum.

Journal: Translational psychiatry

Authors' code: xuanmer/NetworkBrainAge (MIT), xuanmer/StatisticalAnalysis (MIT)

Status: code verified, 18 files readable, 10 matches

[426] doi:10.1038/s41598-026-48825-4 [paper, data]

YOLO-LS: a novel deep learning framework for brain tumor segmentation in Magnetic Resonance Imaging.

Journal: Scientific reports

Status: data only, 2 datasets cited

[427] Code ↔ Paper doi:10.1038/s41698-026-01475-1 [paper, repository]

Radiomics model integrating MRI and ECV enhances prediction accuracy for progression in high-grade glioma.

Journal: NPJ precision oncology

Authors' code: 410312774/MobHyNet (no license)

Status: code verified, 2 files readable, 2 matches

[428] doi:10.3390/diagnostics16101478 [paper]

Autistic vs. Control Differences in MRI Scan Quality Across ABIDE-II Sites.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request

[429] Code ↔ Paper doi:10.3389/fnut.2026.1837406 [paper, repository]

MIND diet moderates the associations between cerebrovascular and neurodegenerative disease burden and cognition.

Journal: Frontiers in nutrition

Authors' code: desdemps/VioScreen-MIND-scoring-R (no license)

Status: code verified, 3 files readable, 2 matches

Tuesday, 12 May 2026 (3 papers)

[430] Code ↔ Paper doi:10.1073/pnas.2521055123 [paper, repository]

Empirical validation of race-neutral normative brain morphometry models across ethnoracially diverse populations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: centilebrain/centilebrain (no license)

Status: code verified, 10 files readable, 2 matches

[431] doi:10.1038/s41598-026-51236-0 [paper, data]

A minimal-net CNN model for an IoT-based brain tumor detection and monitoring system.

Journal: Scientific reports

Status: data only, 3 datasets cited

[432] Code ↔ Paper doi:10.3389/fradi.2026.1785108 [paper, repository]

BT-CAP: a subcomponent-aware and anatomically constrained data augmentation framework for multi-modal brain tumor MRI segmentation.

Journal: Frontiers in radiology

Authors' code: dramintavallaii/BT-CAP (MIT)

Status: code verified, 15 files readable, 16 matches

Monday, 11 May 2026 (6 papers)

[433] doi:10.2340/1651-226x.2026.45685 [paper]

Improving confidence in MRI-based auto-segmentation via uncertainty assessment.

Journal: Acta oncologica (Stockholm, Sweden)

Status: code on request

[434] Code ↔ Paper doi:10.1017/s003329172610405x [paper, repository]

Cortical morphometric inverse divergence in attention-deficit/hyperactivity disorder correlates with cell-type-specific, laminar-specific and developmental transcriptomic signatures.

Journal: Psychological medicine

Authors' code: isebenius/MIND (no license), SarahMorgan/Morphometric_Similarity_SZ (MIT), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 16 files readable, 2 matches

[435] Code ↔ Paper doi:10.1016/j.ebiom.2026.106289 [paper, repository]

DNA methylation signatures of bilateral hippocampal volume, asymmetry and atrophy: a cross-omics analysis in the general population.

Journal: EBioMedicine

Authors' code: Zenodo 18926492 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[436] Code ↔ Paper doi:10.1038/s41598-026-51725-2 [paper, repository]

AI-powered evaluation of dementia severity based on clinical data and visual scoring systems (MTA, ERICA, GCA) from MRI.

Journal: Scientific reports

Authors' code: l-kuo/mri_visual_scores (MIT)

Status: code verified, 16 files readable, 5 matches

[437] doi:10.1038/s41598-026-51942-9 [paper, data]

Quantum SVM-driven framework for accurate brain stroke classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[438] Code ↔ Paper doi:10.1016/j.nicl.2026.104001 [paper, repository]

Effect of vascular lesion preprocessing on Brain Intensity AbNormality Classification Algorithm (BIANCA) white matter hyperintensity segmentation.

Journal: NeuroImage. Clinical

Authors' code: mendeltem/Bianca_Evaluation (no license)

Status: code verified, 35 files readable, 28 matches

Sunday, 10 May 2026 (4 papers)

[439] Code ↔ Paper doi:10.1038/s41746-026-02708-0 [paper, repository]

Multi-dimensional MRI representation and privileged learning approaches to functional outcome prediction for ischemic stroke patients.

Journal: NPJ digital medicine

Authors' code: kayvanlabs/ischemic_stroke_mrs_prediction (no license)

Status: code verified, 3 files readable, 1 match

[440] Code ↔ Paper doi:10.1038/s41467-026-70018-w [paper, repository]

Geometry of the cumulant series in diffusion MRI.

Journal: Nature communications

Authors' code: NYU-DiffusionMRI/RICE (no license), Zenodo 19698777 (CC-BY-4.0)

Status: code verified, 12 files readable, 5 matches

[441] Code ↔ Paper doi:10.1002/mrm.70416 [paper, repository]

Fast and Robust Diffusion Posterior Sampling for MR Image Reconstruction Using the Preconditioned Unadjusted Langevin Algorithm.

Journal: Magnetic resonance in medicine

Authors' code: gitlab.tugraz.at/ibi/mrirecon/papers/dps-pula (no license)

Status: code verified, 37 files readable, 6 matches

[442] Code ↔ Paper doi:10.1002/mds.70349 [paper, repository]

A Severity-Agnostic Atrophy Pattern in Spinocerebellar Ataxia Type 3: Volumetrics from ENIGMA-Ataxia.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: HardingLab/enigma-ataxia (no license)

Status: dead link

Saturday, 9 May 2026 (2 papers)

[443] Code ↔ Paper doi:10.1038/s41467-026-72934-3 [paper, repository]

Multi-focal ultrasound neuromodulation to the dorsal anterior cingulate cortex disrupts behavioural and neural pain processing.

Journal: Nature communications

Authors' code: OSF vp2gz (no license)

Status: code verified, 3 files readable, 2 matches

[444] Code ↔ Paper doi:10.1186/s12916-026-04903-y [paper, repository]

Structural connectome architecture and biological vulnerability shape cortical atrophy in cocaine use disorder.

Journal: BMC medicine

Authors' code: TianyiYanLab/CUD_Pathology_Modelling (no license)

Status: code verified, 15 files readable, 11 matches

Friday, 8 May 2026 (7 papers)

[445] doi:10.1161/strokeaha.125.054736 [paper, data]

Longitudinal Degeneration of Microstructural and Structural Connectivity Patterns Following Stroke.

Journal: Stroke

Status: data only, 1 dataset cited

[446] Code ↔ Paper doi:10.1002/ana.78203 [paper, repository]

AI-Driven Mapping of Seizure Spread Patterns.

Journal: Annals of neurology

Authors' code: andrewyrevell/revellLab (no license), andyrevell/revellLab (no license)

Status: code verified, 398 files readable, 7 matches

[447] Code ↔ Paper doi:10.1038/s41398-026-04036-z [paper, repository]

Distinct sensory atypicalities bridge the gap between brain chemistry and motor dysfunction in autism.

Journal: Translational psychiatry

Authors' code: OSF 5unmc (no license)

Status: code verified, 10 files readable, 4 matches

[448] doi:10.1002/acn3.70418 [paper, data]

Association Between Motor Pathway Damage and Motor Deficit in Upper and Lower Limb in People With MS.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[449] doi:10.1016/j.neuroimage.2026.121986 [paper]

Automated detection of cerebral microbleeds on ex-vivo MRI scans of community-based older adults.

Journal: NeuroImage

Status: code on request

[450] doi:10.3389/fnins.2026.1817743 [paper, data]

Estimation of head motion in structural MRI and its impact on cortical morphometry.

Journal: Frontiers in neuroscience

Status: data only, 13 datasets cited

[451] Code ↔ Paper doi:10.3389/fradi.2026.1809871 [paper, repository]

Multimodal brain MRI and clinical data in olfactory groove meningioma: a prospective data report.

Journal: Frontiers in radiology

Authors' code: UNFmontreal/Dcm2Bids (GPL-3.0)

Status: code verified, 32 files readable, 2 matches

Thursday, 7 May 2026 (4 papers)

[452] Code ↔ Paper doi:10.1002/ana.78252 [paper, repository]

Diffusion MRI and α-Synuclein Seed Amplification Status in Parkinson's Disease.

Journal: Annals of neurology

Authors' code: stnava.github.io (no license)

Status: code verified

[453] Code ↔ Paper doi:10.1016/j.dcn.2026.101738 [paper, repository]

Timing and tempo of puberty and neurodevelopment following adversity: A registered report.

Journal: Developmental cognitive neuroscience

Authors' code: FERNLabUVM/pubertybrain (no license), karalk07/abcd-ela (MIT)

Status: code verified, 24 files readable, 1 match

[454] doi:10.1016/j.ynirp.2026.100351 [paper]

3D quantitative MRI for cognitive performance: T1 relaxation times of the right putamen and volumes of the left hippocampus as key biomarkers.

Journal: Neuroimage. Reports

Status: code on request

[455] Code ↔ Paper doi:10.64898/2026.05.06.26352540 [paper, repository]

Generating synthetic tau-PET scans in Alzheimer’s disease from MRI, blood biomarkers and demographics with deep learning

Journal: medRxiv (preprint)

Authors' code: DeMONLab-BioFINDER/karlsson_synthetic_taupet (CC-BY-NC-4.0)

Status: code verified, 22 files readable, 7 matches

Wednesday, 6 May 2026 (3 papers)

[456] Code ↔ Paper doi:10.7554/elife.103097 [paper, repository]

Canonical neurodevelopmental trajectories of structural and functional manifolds.

Journal: eLife

Authors' code: alicjamonaghan/neurodevelopmental_gradients (CC-BY-4.0)

Status: code verified, 30 files readable, 40 matches

[457] Code ↔ Paper doi:10.1038/s42003-026-10131-0 [paper, repository]

Shared genetic architecture between the topology of brain white matter structural connectome and fluid intelligence.

Journal: Communications biology

Authors' code: bulik/ldsc (GPL-3.0), precimed/pleiofdr (GPL-3.0), Zenodo 19436734 (CC-BY-4.0), sheeya-dong/wm_intelligence (no license)

Status: code verified, 91 files readable, 6 matches

[458] Code ↔ Paper doi:10.1016/j.nicl.2026.104003 [paper, repository]

Contusions bias cortical thickness estimates after traumatic brain injury: A TRACK-TBI study.

Journal: NeuroImage. Clinical

Authors' code: dbrennan44/ANTsNetCT-Cortical-Thickness-with-Contusion-Post-Processing (no license)

Status: code verified, 2 files readable, 1 match

Tuesday, 5 May 2026 (1 paper)

[459] Code ↔ Paper doi:10.1038/s41531-026-01360-5 [paper, repository]

Hippocampal atrophy in untreated de novo Parkinson's disease with obstructive sleep apnea.

Journal: NPJ Parkinson's disease

Authors' code: josefmana/pdosa (other)

Status: code verified, 28 files readable, 12 matches