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Volume-inflation registration (INFREG) for morphometric analysis of human focal cortical dysplasia type II.

Code ↔ Paper

2 matches between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 2 matches
  1. [1] § STAR★Methods › Method details › Neuroimaging normalization ↔ src/MRI_func_brain.m, lines 111–136 · score 0.60 · intensity normalization, SANLM, nonlocal, denoising, CAT, filtering
  2. [2] § STAR★Methods › Method details › Assessment of feature maps for FCD lesions diagnosis and prediction ↔ vox2organ/utils/eval_metrics.py, lines 176–207 · score 0.57 · Dice score, ground truth, metrics, predicting

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

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The authors' code

MATLAB · 169 lines · 4.5 KB · no license · 1 match

The registry keeps no copy of this file: its repository has no license, so its authors keep all their rights to it. Your browser shows it from its source, with JavaScript.

It can be read at the source: src/MRI_func_brain.m.

Overview

Authors: Yongsheng Zhang1, Haojie Han1, Fang Chen2, Hongen Liao1,2
ORCID iDs: Yongsheng Zhang
  1. School of Biomedical Engineering, Tsinghua University, Beijing 100084, China
  2. School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
Institutions: Tsinghua University (China); Shanghai Jiao Tong University (China)
Journal: iScience, volume 29, issue 9, article 117446
Dates: received 31 October 2025; accepted 20 August 2026; published online 9 September 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1016/j.isci.2026.117446 · PMID 42755994 · PMCID PMC13582014 · OpenAlex W7212078393
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: structural MRI / diffusion (modality), human (organism), epilepsy (population)
Methods: Connectivity, Statistics, Spectral & time-frequency, Machine learning, fMRI & imaging
Keywords: brain, registration, inflation, focal cortical dysplasia, voxel-based morphometry
Topic: Glioma Diagnosis and Treatment (Genetics, Medicine), according to OpenAlex
Funding: National Natural Science Foundation of China (U22A2051, 82027807, 62201315); Science and Technology Commission of Shanghai Municipality (24511104100); National Key Research and Development Program of China (2022YFC- 2405200)
Citations: not cited yet (Europe PMC); 56 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Repositories

Its files are read in the Code ↔ Paper reader above, with 2 matches between paragraphs and lines of code.

ifsunrise/brain-inflate-registration

License: none: the authors keep all their rights
State: the link answers, verified on 26 September 2026
Evidence: files inventoried
Commit: 9568fddc506662d40ae9f088951b3494efb24bee, 26 July 2026
Languages: MATLAB (24)
Size: 26 files, 24 scripts
Software Heritage: not archived
Found in: “Data and code availability”
Holds: README, 11 notebooks
Not found: license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: Image Processing Toolbox (10 files), Brainstorm (1 file), CAT12 (1 file), Parallel Computing Toolbox (1 file)
Availability: 1 check, the latest on 26 September 2026: the link answers
  • 26 September 2026: the link answers
25 files, not copied: shown from their source

OSCR keeps no copy of these files: this repository has no license that allows it. The reader above shows each one from its source, fetched by your browser at commit 9568fdd, when its fingerprint is the one OSCR verified. How this works.

At the source: github.com/ifsunrise/brain-inflate-registration

ai-med/Vox2Cortex

License: GPL-3.0
State: the link answers, verified on 26 September 2026
Evidence: files inventoried
Commit: ef10ca2cf9999e1698a98a4bf9dce19b0000bd10, 21 May 2025
Languages: Python (49), Shell (3), Jupyter (2)
Size: 93 files, 54 scripts
Software Heritage: not archived
Found in: the resources table
Holds: README, license file, environment (docker/Dockerfile), 2 notebooks
Not found: CITATION.cff, tests, continuous integration, documentation
Tools: PyTorch (27 files), NumPy (24 files), NiBabel (16 files), Matplotlib (5 files), scikit-image (5 files), pandas (4 files), SciPy (3 files), FreeSurfer (2 files), PyTorch Geometric (1 file), SimpleITK (1 file)
Availability: 1 check, the latest on 26 September 2026: the link answers
  • 26 September 2026: the link answers
56 files
At the source: github.com/ai-med/Vox2Cortex

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 2 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 78 scripts, each with its path and the digest of its content;
  • 2 matches between paragraphs of the paper and lines of the code (method lexical-v1);
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

Availability statements

The paper has a data availability statement and a code and data availability statement. Its license (CC BY-NC-ND) does not allow reproducing them here; in short, from what the harvester recognized in them:

Read them in the paper: doi.org/10.1016/j.isci.2026.117446.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 3, 28 September 2026

  • Authors: added Yongsheng Zhang (0000-0002-3086-2168); removed Yongsheng Zhang
  • Funding: added National Natural Science Foundation of China: U22A2051, 82027807, 62201315; Science and Technology Commission of Shanghai Municipality: 24511104100; National Key Research and Development Program of China: 2022YFC- 2405200

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 4 authors, 5 keywords, 56 references.

Cite

This paper

Zhang, Y., Han, H., Chen, F., & Liao, H. (2026). Volume-inflation registration (INFREG) for morphometric analysis of human focal cortical dysplasia type II. iScience, 29(9), 117446. https://doi.org/10.1016/j.isci.2026.117446

BibTeX

@article{zhang2026volume,
author = {Zhang, Yongsheng and Han, Haojie and Chen, Fang and Liao, Hongen},
title = {{Volume-inflation registration (INFREG) for morphometric analysis of human focal cortical dysplasia type II}},
journal = {iScience},
year = {2026},
month = sep,
volume = {29},
number = {9},
pages = {117446},
publisher = {Elsevier},
issn = {2589-0042},
doi = {10.1016/j.isci.2026.117446},
url = {https://doi.org/10.1016/j.isci.2026.117446},
pmid = {42755994},
pmcid = {PMC13582014}
}

RIS

TY - JOUR
AU - Zhang, Yongsheng
AU - Han, Haojie
AU - Chen, Fang
AU - Liao, Hongen
TI - Volume-inflation registration (INFREG) for morphometric analysis of human focal cortical dysplasia type II
T2 - iScience
J2 - iScience
PY - 2026
DA - 2026/09/09
VL - 29
IS - 9
SP - 117446
SN - 2589-0042
PB - Elsevier
DO - 10.1016/j.isci.2026.117446
UR - https://doi.org/10.1016/j.isci.2026.117446
LA - en
ER -

CSL-JSON

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The tracing map gets a citation of its own once an author has validated it and it has a DOI.

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