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Alternative splicing across the C. elegans nervous system.

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cei/bulk_align

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cengenproject/novel_junctions

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cengenproject/stringtie_quantif

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cengenproject/splicing_browser

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cengenproject/das_by_neuron

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cengenproject/isoform_compare

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cengenproject/suppa_events

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cengenproject/reanalysis_tissue

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cengenproject/quantif_exon_skipping

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cengenproject/projectNPN

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cengenproject

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cengenproject/bulk_align

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Zenodo 14206313

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Tools found in the code: BEDTools, circlize, ComplexHeatmap, cowplot, ggplot2, glmnet, igraph, Nextflow, patchwork, pheatmap, Plotly, SAMtools, STAR, Subread (featureCounts), tidyverse

Overview

Authors: Alexis Weinreb, Erdem Varol, Alec Barrett, Rebecca M McWhirter, Seth R Taylor, Isabel Courtney, Manasa Basavaraju, Abigail Poff, John A Tipps, Becca Collings, The CeNGEN Consortium, Smita Krishnaswamy, David M Miller III, Marc Hammarlund
Journal: Nature communications
Published: 16 May 2025
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.1038/s41467-025-58293-5
License: CC BY-NC-ND
Institutions: Yale University (United States), New York University (United States), Vanderbilt University (United States), Brigham Young University (United States)
Categories: genetics / omics (modality), C. elegans (organism), cellular / molecular (subfield)

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