cellular / molecular

Subfield: 13,033 papers with a page, 5,138 of them with their authors' code.

Wednesday, 11 November 2026 (2 papers)

[1] Code ↔ Paper doi:10.1098/rsos.261544 [paper, repository]

Structurally related Ca<sup>2+</sup>-release activated Ca<sup>2+</sup> channel inhibitors exhibit distinct extracellular and intracellular modes of action.

Journal: Royal Society open science

Authors' code: Zenodo 21357627 (CC-BY-4.0), doi:10.6084/m9.figshare.c.8775182 (no license)

Status: code verified

[2] doi: [paper, data]

The alarmin IL33 marks a thymocyte dependent shift in the makeup of cortical thymic epithelial cells

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

Tuesday, 10 November 2026 (1 paper)

[3] doi:10.26508/lsa.202603770 [paper, data]

Mitochondrial protein import stress augments α-synuclein aggregation and neural damage.

Journal: Life science alliance

Status: code on request, 1 dataset cited

Monday, 9 November 2026 (3 papers)

[4] Code ↔ Paper doi:10.1038/s41467-026-77651-5 [paper, repository]

Single-cell machine learning uncovers genetically anchored, cell-type specific programs of Alzheimer's disease.

Journal: Nature communications

Authors' code: AdiVM/TriSCOPE_RNASeq_Alzheimers_Analysis (MIT), Zenodo 21793738 (MIT)

Status: code verified, 220 files readable, 40 matches

[5] Code ↔ Paper doi:10.1038/s41467-026-79055-x [paper, repository]

Calpain-mediated TBP cleavage disturbs neuronal AMOT-YAP1 signalling.

Journal: Nature communications

Authors' code: Zenodo 22231266 (CC-BY-4.0)

Status: code verified

[6] doi:10.1002/advs.78714 [paper, data]

LepR-Lineage Cells Represent the Main Target of the Nociceptive CGRP Pathway in White Adipose Tissue Browning.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

Friday, 6 November 2026 (3 papers)

[7] doi:10.1126/sciadv.aea3106 [paper]

Brainstem enkephalinergic neural circuit underlying cold-induced pain relief in mice.

Journal: Science advances

Status: data only

[8] Code ↔ Paper doi:10.1126/sciadv.aej4381 [paper, repository]

CD8<sup>+</sup> T cells induce RIPK1-regulated brain endothelial cell death in cerebral malaria.

Journal: Science advances

Authors' code: Zenodo 22685549 (no license)

Status: dead link

[9] Code ↔ Paper doi: [paper, repository]

Common transcriptional changes in the brain during hibernation and Alzheimer’s disease

Journal: Science advances

Authors' code: aertslab/create_cisTarget_databases (no license), Zenodo 5751297 (other-open), vib-singlecell-nf/scenic (no license), vib-singlecell-nf/vsn-pipelines (GPL-3.0)

Status: code verified, 185 files readable, 5 matches

Monday, 2 November 2026 (2 papers)

[10] Code ↔ Paper doi:10.1038/s41467-026-78908-9 [paper, repository]

Reconstructing the single-cell spatiotemporal dynamics of glioblastoma invasion.

Journal: Nature communications

Authors' code: Gliomethods/GlioTrace (Apache-2.0), doi:10.5281/zenodo-21996609 (no license)

Status: code verified, 45 files readable, 17 matches

[11] doi:10.1002/advs.78530 [paper, data]

Reln mRNA Delivery Drives Neurogenic Bone Regeneration by Orchestrating Schwann Cell-Mediated Exosomal Trafficking.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

Sunday, 1 November 2026 (11 papers)

[12] doi:10.1093/brain/awag085 [paper, data]

Transcriptomic signature of frontotemporal lobar degeneration with TDP-43 type C pathology.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[13] doi:10.1093/brain/awag119 [paper, data]

Collapse of feed-forward inhibition underpins hyperexcitability in GABAA receptor gain-of-function epilepsy.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[14] doi:10.1111/acel.70787 [paper, data]

TOP2A Maintains Heterochromatin Stability by Sustaining LMNB1 Expression to Counteract Senescence.

Journal: Aging cell

Status: data only, 1 dataset cited

[15] Code ↔ Paper doi:10.1111/mec.70614 [paper, repository]

Brain Transcriptomic Changes Associated With the Socially Regulated Behavioural Specialisation of Ant Queens.

Journal: Molecular ecology

Authors' code: supp:PMC13724878/MEC-35-e70614-s003.zip (no license)

Status: code verified, 1 file readable, 9 matches

[16] Code ↔ Paper doi:10.1093/bib/bbag601 [paper, repository]

ADInteractome: discovering Alzheimer's disease-associated gene interactions from single-nucleus RNA-seq data through neural interaction states.

Journal: Briefings in bioinformatics

Authors' code: Evan810828/ADInteractome (no license)

Status: code verified, 49 files readable, 6 matches

[17] Code ↔ Paper doi:10.1002/glia.70220 [paper, repository]

Müller Glia Subtypes Define Neuro-Glial Associations and Spatial Morphogen Axes in the Zebrafish Retina.

Journal: Glia

Authors' code: s-storey/storey-muller-glia-heterogeneity-2026 (no license)

Status: code verified, 9 files readable, 16 matches

[18] doi:10.1002/glia.70238 [paper, data]

Novel Na<sub>V</sub>1.6-Mitochondrial Complexes in Retinal Astrocyte Pockets Sequester GABA.

Journal: Glia

Status: data only, 1 dataset cited

[19] doi:10.1002/glia.70236 [paper, data]

Cell Surface Markers Identify Astrocyte Subpopulations in the Adult Hippocampus With a Heterogeneous Response to Aging.

Journal: Glia

Status: data only, 1 dataset cited

[20] doi:10.1042/bcj20250110 [paper, data]

No lysine? No problem: the surprising roles of WNK kinases in physiology and disease.

Journal: The Biochemical journal

Status: data only, 5 datasets cited

[21] Code ↔ Paper doi:10.1002/hipo.70139 [paper, repository]

Quantitative Assessment of Mesoscale Cellular Order and Organization in the Mouse Hippocampus.

Journal: Hippocampus

Authors' code: gitlab.mpcdf.mpg.de/konmi/image-analysis-ui (no license)

Status: code verified, 8 files readable, 3 matches

[22] Code ↔ Paper doi:10.1111/jne.70298 [paper, repository]

Arcuate kisspeptin neurons display two types of calcium events: Regulation by sex, gonads, and senktide.

Journal: Journal of neuroendocrinology

Authors' code: syncytium2/KNDy-Ca-1 (MIT), gibson-amandag/ArcKissCa_analysis (no license)

Status: code verified, 301 files readable, 5 matches

Saturday, 31 October 2026 (1 paper)

[23] Code ↔ Paper doi: [paper, repository]

Brain PDGFRβ+ Cells Exhibit Diverse Reactive Phenotypes After Stroke Without Requiring KLF4

Journal: Glia

Authors' code: Zenodo 13948420 (CC-BY-4.0), elalilab/stroke_pdgfr-b_reactivity (no license)

Status: code verified, 71 files readable, 21 matches

Friday, 30 October 2026 (1 paper)

[24] Code ↔ Paper doi:10.1126/sciadv.ady5085 [paper, repository]

Decoder-FFPE-seq enables sensitive, genome-wide spatial transcriptomics of archival tissues at single-cell resolution.

Journal: Science advances

Authors' code: HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite (MIT), Zenodo 19872452 (CC-BY-4.0), Zenodo 19873057 (GPL-3.0), DynamicBiosystems/DynamicST (GPL-3.0), DynamicBiosystems/DynamicST-Assist (no license), Zenodo 19872995 (CC-BY-4.0), MIW-91/Decoder-FFPE-seq (no license), miw-91/dynamicst-assist (no license)

Status: code verified, 122 files readable, 22 matches

Thursday, 29 October 2026 (1 paper)

[25] doi:10.1002/advs.78567 [paper, data]

A UBE3A-UTX Proteostasis-Epigenetic Axis Governs Hypothalamic Energy Homeostasis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

Wednesday, 28 October 2026 (2 papers)

[26] Code ↔ Paper doi:10.7554/elife.110314 [paper, repository]

Loose coupling between Ca<sup>2+</sup> channels and release sensors as a synaptic correlate of higher-order brain function.

Journal: eLife

Authors' code: Hartmut-Schmidt/eLife2026 (MIT)

Status: code verified, 7 files readable

[27] Code ↔ Paper doi:10.1126/sciadv.aei2661 [paper, repository]

Presynaptic filopodia form kinapses and promote convective membrane flow to sustain synchronous neurotransmitter release.

Journal: Science advances

Authors' code: Zenodo 19667730 (CC-BY-4.0), jliu187/presynaptic-terminal-flow (no license)

Status: code verified, 8 files readable, 3 matches

Tuesday, 27 October 2026 (3 papers)

[28] Code ↔ Paper doi:10.1038/s41421-026-00928-y [paper, repository]

A droplet-based long-read single-cell epigenome sequencing method for the high-throughput profiling of multidimensional regulatory elements within individual cells.

Journal: Cell discovery

Authors' code: mskilab-org/gUtils (GPL-2.0), LuJiansen/dscNanoSeq (MIT), Zenodo 15102690 (CC-BY-4.0), LuJiansen/AS-C.Origami (no license), Zenodo 21389362 (CC-BY-4.0)

Status: code verified, 43 files readable, 8 matches

[29] doi:10.1371/journal.pbio.3004041 [paper, data]

fruitless is essential for male Aedes aegypti mosquito attraction to female flight sounds.

Journal: PLoS biology

Status: data only, 1 dataset cited

[30] doi:10.7554/elife.111703 [paper, data]

<i>foxQ2</i> marks fast-acting interneurons including dopaminergic neurons of <i>mushroom bodies</i> and <i>central complex</i> in the beetle <i>Tribolium castaneum</i>.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 26 October 2026 (1 paper)

[31] Code ↔ Paper doi:10.1038/s41392-026-02794-2 [paper, repository]

Spatiotemporally resolved single-nucleus transcriptomics reveals cellular and regional vulnerability in the midbrain in Parkinson's disease.

Journal: Signal transduction and targeted therapy

Authors' code: whistle-ch0i/SNUH_PD_analysis (no license)

Status: code verified, 10 files readable, 5 matches

Saturday, 24 October 2026 (1 paper)

[32] doi: [paper, data]

DSP1 regulates planarian (Dugesia japonica) neural regeneration depending on CnB

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

Friday, 23 October 2026 (2 papers)

[33] doi:10.1371/journal.pone.0361026 [paper, data]

Decoding motor imagery EEG signals by a deep learning network integrating multiscale filtering and temporal-channel attention mechanisms.

Journal: PloS one

Status: data only, 2 datasets cited

[34] Code ↔ Paper doi:10.1126/sciadv.aeg5791 [paper, repository]

Retroviral insertions contributed to the divergence of human and chimpanzee brains.

Journal: Science advances

Authors' code: PatricJernLab/RetroTector (MIT), Molecular-Neurogenetics/LINC00662_PTERV_Gerdes2025 (no license), Zenodo 21493999 (CC-BY-4.0)

Status: code verified, 76 files readable, 23 matches

Thursday, 22 October 2026 (1 paper)

[35] doi:10.1007/s00401-026-03103-5 [paper]

TSPO-PET binding in vivo reflects increased phagocytic microglia at post mortem in people with frontotemporal dementia.

Journal: Acta neuropathologica

Status: code on request

Wednesday, 21 October 2026 (4 papers)

[36] Code ↔ Paper doi:10.1126/sciadv.aei5171 [paper, repository]

Differential sex-dependent responses of circulating steroid hormones and cortical gene expression in a traumatic brain injury model.

Journal: Science advances

Authors' code: Zenodo 21726001 (Apache-2.0), plaisier-lab/sex_specific_tbi (Apache-2.0)

Status: code verified, 30 files readable, 8 matches

[37] doi:10.1126/sciadv.aef7786 [paper, data]

p75<sup>NTR</sup> orchestrates chondrogenesis and mechanoadaptation to preserve temporomandibular joint development and homeostasis.

Journal: Science advances

Status: data only, 2 datasets cited

[38] Code ↔ Paper doi:10.1002/gps3.70062 [paper, repository]

Astrocyte-enriched and cilia-related genetic signatures in dementia: A whole-exome sequencing study.

Journal: General psychiatry

Authors' code: bcbio/bcbio-nextgen (MIT)

Status: code verified, 318 files readable, 4 matches

[39] Code ↔ Paper doi:10.1523/jneurosci.0398-26.2026 [paper, repository]

Molecular Disambiguation of Heart Rate Control by the Nucleus Ambiguus.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Zenodo 22864368 (CC-BY-4.0)

Status: code verified, 5 files readable, 5 matches

Friday, 9 October 2026 (4 papers)

[40] doi: [paper, data]

Interactions between Tick-Borne Encephalitis Virus Nonstructural Protein 1 and Blood–Brain Barrier Tight Junction Proteins: Potential Clues to Strain-Specific Neuropathogenicity

Journal: ACS omega

Status: data only, 3 datasets cited

[41] doi: [paper, data]

Time-dependent transcriptomic response to scrapie exposure in ovine MSC-derived neuron-like cells

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[42] Code ↔ Paper doi: [paper, repository]

Rod photoreceptors have a dual dependency on both aerobic glycolysis and OXPHOS and diverge metabolically from other retinal neurons

Journal: Science advances

Authors' code: doi:10.5061/dryad.gxd25482w (no license), Zenodo 22768263 (CC-BY-4.0)

Status: code verified, 58 files readable

[43] Code ↔ Paper doi: [paper, repository]

Sensory receptor expansion and neural accommodation in butterfly color vision

Journal: Science advances

Authors' code: Zenodo 21811741 (CC-BY-4.0), kekebird888/scrnaseq-butterfly (no license)

Status: code verified, 2 files readable

Thursday, 8 October 2026 (1 paper)

[44] Code ↔ Paper doi: [paper, repository]

Dynamic effects of microglial NLRP3 on transcriptional alterations post-traumatic brain injury

Journal: Frontiers in neuroscience

Authors' code: jstjohn/SeqPrep (MIT), najoshi/sickle (MIT)

Status: code verified, 23 files readable

Friday, 2 October 2026 (3 papers)

[45] doi:10.1007/s13659-026-00617-z [paper, data]

Methyl eugenol increases neural microcirculation to promote nerve repair by regulating endothelial cell and Schwann cell communication via Ptn/Sdc4.

Journal: Natural products and bioprospecting

Status: data only, 1 dataset cited

[46] Code ↔ Paper doi:10.1126/sciadv.aei0203 [paper, repository]

Synapse-like specializations at dopamine release sites orchestrate efficient and precise neuromodulatory signaling.

Journal: Science advances

Authors' code: janeliascicomp/nnmf (BSD-3-Clause), Imbrosci/synaptic-vesicles-detection (no license), JaneliaSciComp/beyene-lab (BSD-3-Clause)

Status: code verified, 96 files readable, 5 matches

[47] Code ↔ Paper doi:10.1038/s41467-026-77957-4 [paper, repository]

Cannabinoid modulation of central amygdala population dynamics during threat investigation.

Journal: Nature communications

Authors' code: figshare 21956801 (CC-BY-4.0), luisrosasvidal/Rosas-Vidal2025 (GPL-3.0), fyasmin09/yasmin_et_al_2026 (no license)

Status: code verified, 25 files readable, 11 matches

Thursday, 1 October 2026 (5 papers)

[48] Code ↔ Paper doi:10.1098/rstb.2025.0264 [paper, repository]

Traumatic brain injury induces cell-type-specific remodelling of the proteostasis network.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: Ciryam-Lab/Lefkowitz-Proteostasis-2026 (no license), doi:10.6084/m9.figshare.c.8672767 (no license)

Status: code verified, 5 files readable, 10 matches

[49] Code ↔ Paper doi:10.1111/acel.70656 [paper, repository]

Deep Learning Predicts Hematopoietic Stem Cell Aging From 3D Chromatin Images.

Journal: Aging cell

Authors' code: biomedical-data-science/chromagenet (MIT)

Status: code verified, 22 files readable, 21 matches

[50] Code ↔ Paper doi:10.1002/glia.70210 [paper, repository]

Predicting Relevant Microglia-Associated Cell-Cell Communication Pathways in Alzheimer's Disease: A Role for SPP1.

Journal: Glia

Authors' code: jmkotah/AD_snRNAseq (no license)

Status: code verified, 10 files readable, 10 matches

[51] Code ↔ Paper doi:10.1002/glia.70204 [paper, repository]

Müller Glia-Vasculature Interactions in the Developing Retina.

Journal: Glia

Authors' code: FellerLabCodeShare/Glia_Vasculature (no license)

Status: code verified, 4 files readable, 1 match

[52] Code ↔ Paper doi:10.1002/hbm.70645 [paper, repository]

Spatial Collinearity Constrains Multivariate Molecular-Enriched Network Estimation.

Journal: Human brain mapping

Authors' code: thomasyeolab/cbig (MIT), yetianmed/subcortex (MIT)

Status: code verified, 2,046 files readable, 3 matches

Wednesday, 30 September 2026 (2 papers)

[53] doi:10.1002/advs.78033 [paper, data]

A Neutrophil Membrane-Encapsulated Pd/hCeO<sub>2</sub> Nanoformulation for Alleviating Age-Dependent Perioperative Neurocognitive Disorders.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[54] doi:10.1002/advs.77733 [paper]

Spatial Transcriptomics Reveals a T Cell-Mediated Microglial Activation Axis of Immune Checkpoint Inhibition-Related Adverse Events in the Brain.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

Tuesday, 29 September 2026 (1 paper)

[55] doi: [paper, data]

Mesenchymal stem cell-derived extracellular vesicles ameliorate heat stroke-induced hippocampal injury and modulate VIM-AS1-associated miR-34a-5p/Per2 signaling

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

Monday, 28 September 2026 (2 papers)

[56] doi:10.1007/s00424-026-03212-w [paper, data]

Analysis of sodium self-inhibition of the epithelial sodium channel (ENaC) using classical and medium-throughput automated two-electrode voltage-clamp recordings.

Journal: Pflugers Archiv : European journal of physiology

Status: data only, 1 dataset cited

[57] Code ↔ Paper doi:10.7554/elife.110011 [paper, repository]

Tau hyperphosphorylation impairs cooperative binding to microtubules and perturbs organelle trafficking in neurons.

Journal: eLife

Authors' code: danielbeaudet-McGill/scripts_data_Beaudet_Berger_Hendricks_eLife_2026 (MIT)

Status: code verified, 1 file readable

Saturday, 26 September 2026 (2 papers)

[58] Code ↔ Paper doi:10.1007/s00429-026-03166-w [paper, repository]

Autoencoders for unsupervised analysis of rat myeloarchitecture.

Journal: Brain structure & function

Authors' code: UEF-Multiscale-Imaging/AE-and-GMM-myelin-stained-tissue (MIT)

Status: code verified, 53 files readable, 6 matches

[59] Code ↔ Paper doi: [paper, repository]

Beyond bacteria: a multi-omics view of the gut–brain axis in Parkinson’s disease

Journal: Frontiers in cellular and infection microbiology

Authors' code: hanhuiyeye/PD (no license), euniceokk/prisma (no license)

Status: code verified, 4 files readable, 4 matches

Friday, 25 September 2026 (3 papers)

[60] Code ↔ Paper doi:10.1126/sciadv.aef2202 [paper, repository]

MCA1 mechanosensitive channels enable fast communication of wound signals between lateral roots.

Journal: Science advances

Authors' code: Zenodo 20036842 (CC-BY-4.0), angelbaudon/angelbaudon-lateral-root-communication-2026 (no license)

Status: code verified, 22 files readable

[61] doi:10.1002/2211-5463.70302 [paper, data]

KDAC6 alters cell morphology and motility through positive and negative modulation of F-actin distribution.

Journal: FEBS open bio

Status: data only, 10 datasets cited

[62] doi:10.1007/s00401-026-03082-7 [paper, data]

Deletion or immunotherapeutic blockade of FcγRIIb (CD32b) impairs α-Syn propagation in vivo.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

Monday, 21 September 2026 (1 paper)

[63] doi:10.1186/s12915-026-02717-1 [paper, data]

Odorant receptor structures predict the major female sex pheromone component in a moth.

Journal: BMC biology

Status: data only, 1 dataset cited

Friday, 18 September 2026 (2 papers)

[64] Code ↔ Paper doi:10.1126/sciadv.adx0731 [paper, repository]

Targeting glial PD-1/PD-L1 restores microglial homeostasis and reduces neuronal hyperactivity in an Alzheimer's disease model.

Journal: Science advances

Authors' code: Zenodo 19411437 (CC-BY-4.0)

Status: code verified, 3 files readable

[65] doi:10.1080/22221751.2026.2728216 [paper, data]

Triacylglycerol metabolism is a novel target to combat West Nile virus infection.

Journal: Emerging microbes & infections

Status: data only, 1 dataset cited

Thursday, 17 September 2026 (2 papers)

[66] doi:10.1038/s41467-026-77508-x [paper, data]

Structures of the volume-regulated anion channel LRRC8A/D in activating and inhibiting conditions.

Journal: Nature communications

Status: data only, 4 datasets cited

[67] doi:10.1371/journal.pdig.0001665 [paper, data]

Inflammation is associated with altered functional connectivity of the cingulate cortex in individuals with subthreshold depression.

Journal: PLOS digital health

Status: data only, 1 dataset cited

Wednesday, 16 September 2026 (5 papers)

[68] Code ↔ Paper doi:10.2147/jir.s633117 [paper, repository]

Single-Nucleus Transcriptomic Mapping Reveals Correlative Microglial Changes Associated with rTMS in the Motor Cortex After Spinal Cord Injury.

Journal: Journal of inflammation research

Authors' code: 10XGenomics/cellranger (MIT)

Status: code verified, 789 files readable, 2 matches

[69] Code ↔ Paper doi:10.1002/advs.77822 [paper, repository]

Temporal Trajectories of the Tau Aggregate Interactome Reveal Stage-Specific Vulnerabilities in Alzheimer's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 17990783 (MIT), dboeken/boeken_tau_aggregate_interactome (MIT)

Status: code verified, 19 files readable, 2 matches

[70] doi:10.1186/s40035-026-00577-x [paper, data]

Brain region-resolved pharmacodynamics of an antisense oligonucleotide targeting human SNCA 3'UTR in BAC-hSNCA rats.

Journal: Translational neurodegeneration

Status: data only, 3 datasets cited

[71] Code ↔ Paper doi:10.1038/s42003-026-10957-8 [paper, repository]

Brain defence by the extracellular matrix protein Cochlin.

Journal: Communications biology

Authors' code: animesh/scripts (GPL-2.0), Raghumoy/Cochlin_manuscript (no license)

Status: code verified, 1,156 files readable, 9 matches

[72] doi:10.1371/journal.ppat.1014603 [paper, data]

Analysis of host and viral nascent and steady-state RNA levels in a human neuronal model of herpes simplex virus 1 infection.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

Tuesday, 15 September 2026 (2 papers)

[73] doi:10.1186/s12348-026-00638-2 [paper, data]

Putative mechanisms of ocular inflammation in syphilis.

Journal: Journal of ophthalmic inflammation and infection

Status: data only, 1 dataset cited

[74] Code ↔ Paper doi:10.7554/elife.108950 [paper, repository]

Comprehensive RNA velocity by modeling the cascade of gene regulation, transcription, and splicing from single-cell RNA sequencing data with TSvelo.

Journal: eLife

Authors' code: lijc0804/TSvelo (MIT), elenasabbioni/bayvel_notebooks (no license)

Status: code verified, 37 files readable, 8 matches

Monday, 14 September 2026 (1 paper)

[75] Code ↔ Paper doi:10.1038/s41467-026-77800-w [paper, repository]

Learning reorganizes dendritic and stabilizes axon initial segment inhibitory synapses in CA1 pyramidal neurons.

Journal: Nature communications

Authors' code: codeocean:9762429 (no license)

Status: code found, still to be checked

Sunday, 13 September 2026 (1 paper)

[76] doi:10.1113/jp290864 [paper, data]

Heart failure-induced reprogramming of salt-evoked neurovascular coupling in the rat hypothalamus.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

Friday, 11 September 2026 (7 papers)

[77] doi:10.1155/humu/4225263 [paper, data]

The Charcot-Marie-Tooth Neuropathy (CMTX3) Complex Structural Variation Causes Differential SOX3 Spatiotemporal Expression.

Journal: Human mutation

Status: data only, 1 dataset cited

[78] doi:10.1186/s12974-026-03970-5 [paper, data]

Estrogen deprivation exacerbates Alzheimer's disease pathology through neuronal CTSS signaling.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[79] doi:10.1038/s43587-026-01204-0 [paper, data]

Fibronectin mediates APOE4-driven blood-brain barrier dysfunction in Alzheimer's disease.

Journal: Nature aging

Status: data only, 2 datasets cited

[80] Code ↔ Paper doi:10.1126/sciadv.aeb8889 [paper, repository]

Diverse ancestral myosin motors generate and segregate distinct types of nanocluster-rich domains at the plasma membrane.

Journal: Science advances

Authors' code: Zenodo 21241290 (no license)

Status: dead link

[81] Code ↔ Paper doi:10.1126/sciadv.aec4911 [paper, repository]

Dendritic shaft constrictions shape synaptic integration in neurons.

Journal: Science advances

Authors' code: tonykelly00/DSC_model (no license), tonykelly00/DSC_morphology_pipeline (no license)

Status: code verified, 35 files readable, 4 matches

[82] doi:10.1073/pnas.2620112123 [paper, data]

Direct activation of SARM1 by dsDNA is not supported by biochemical and cellular evidence.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[83] doi:10.1080/21505594.2026.2721762 [paper, data]

Identification of a mechanical signaling pathway activating type 1 fimbriae via a ZraSR two-component system in neonatal meningitis-associated <i>Escherichia coli</i>.

Journal: Virulence

Status: data only, 2 datasets cited

Thursday, 10 September 2026 (4 papers)

[84] doi:10.1162/imag.a.1358 [paper, data]

Spatial covariance of mGluR5 density and structural degeneration in behavioral variant frontotemporal degeneration.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[85] Code ↔ Paper doi:10.1371/journal.pcbi.1013752 [paper, repository]

Calmodulin controls spatial and temporal specificity of calcium-induced calcium release.

Journal: PLoS computational biology

Authors' code: asiaszmek/stochastic_ER (CC-BY-4.0)

Status: code verified, 39 files readable, 2 matches

[86] Code ↔ Paper doi:10.1371/journal.pone.0355902 [paper, repository]

Pericyte-derived cancer-associated fibroblasts correlate with poor survival and are enriched after chemoradiotherapy in glioblastoma.

Journal: PloS one

Authors' code: neuropromotion/CAFs-in-glioblastoma-microenvironment (no license)

Status: code verified, 12 files readable, 5 matches

[87] Code ↔ Paper doi:10.1371/journal.pbio.3003959 [paper, repository]

Recurrent synapses between CO2-sensitive olfactory sensory neurons enable robust CO2 detection in Aedes aegypti mosquitoes.

Journal: PLoS biology

Authors' code: htem/aedes_public (GPL-3.0), Zenodo 21403889 (GPL-3.0)

Status: code verified, 142 files readable, 4 matches

Wednesday, 9 September 2026 (4 papers)

[88] doi:10.1016/j.isci.2026.117487 [paper, data]

Endothelial SLC38A2 controls brain D-serine homeostasis and synapse development.

Journal: iScience

Status: code on request, 1 dataset cited

[89] Code ↔ Paper doi:10.1126/sciadv.aeb4205 [paper, repository]

Learning stochastic dynamics and cell-fate landscapes from single-cell snapshots via optimal transport.

Journal: Science advances

Authors' code: allonkleinlab/paper-data (no license), liujuntan/DiffusionOT (MIT), Zenodo 18251638 (CC-BY-4.0)

Status: code verified, 46 files readable, 9 matches

[90] Code ↔ Paper doi:10.1126/sciadv.adq8840 [paper, repository]

Astrocytes mediate the dopaminergic modulation of tonic GABAergic signaling in substantia nigra.

Journal: Science advances

Authors' code: Zenodo 10855006 (CC-BY-4.0), Zenodo 17296457 (CC-BY-4.0)

Status: code verified, 1 file readable

[91] doi:10.1007/s12640-026-00825-y [paper, data]

Atorvastatin Shows Limited Disease-Modifying Effects in an A53T α-Synuclein Mouse Model of Parkinson's Disease.

Journal: Neurotoxicity research

Status: data only, 1 dataset cited

Tuesday, 8 September 2026 (6 papers)

[92] doi:10.1016/j.bbrep.2026.102782 [paper, data]

Selective under-representation of transcripts encoding membrane-integrated architectures following neural tissue vitrification.

Journal: Biochemistry and biophysics reports

Status: data only, 1 dataset cited

[93] Code ↔ Paper doi:10.1093/braincomms/fcag323 [paper, repository]

Induced epileptic seizures in larval zebrafish reveal a synaptic modulation associated with the post-ictal state.

Journal: Brain communications

Authors' code: OSF sd5jy (no license)

Status: code verified, 24 files readable, 5 matches

[94] Code ↔ Paper doi:10.1038/s41588-026-02737-1 [paper, repository]

Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover.

Journal: Nature genetics

Authors' code: artem-artemov/adrenal (no license), MaksimovDenis/adrenalglandscatlas (MIT), Zenodo 20258071 (CC-BY-4.0)

Status: code verified, 7 files readable, 8 matches

[95] Code ↔ Paper doi:10.1371/journal.pgen.1012126 [paper, repository]

FM-GPT: Bayesian fine mapping for phenome-wide transcriptome-wide association studies.

Journal: PLoS genetics

Authors' code: tacanida/fm-gpt (no license)

Status: code verified, 10 files readable, 2 matches

[96] doi:10.1073/pnas.2619143123 [paper, data]

Cell-type-specific circadian and light-responsive transcriptional dynamics in adult <i>Drosophila</i> neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[97] Code ↔ Paper doi:10.7554/elife.108021 [paper, repository]

BetaII-spectrin gaps and patches emerge from the patterned assembly of the actin/spectrin membrane skeleton in human motor neuron axons.

Journal: eLife

Authors' code: cibion-conicet/Gollum (GPL-3.0)

Status: code verified, 15 files readable, 1 match

Monday, 7 September 2026 (1 paper)

[98] doi:10.1186/s13062-026-00912-2 [paper, data]

Integrated analysis of single-cell transcriptome identifies a glial-neurovascular signaling trajectory in brain repair after ischemia.

Journal: Biology direct

Status: data only, 1 dataset cited

Sunday, 6 September 2026 (1 paper)

[99] doi:10.1113/ep093541 [paper]

Mechanical pressure on endothelial cells mediates remote ischaemic preconditioning-induced neuroprotection via miR-126.

Journal: Experimental physiology

Status: data only

Saturday, 5 September 2026 (2 papers)

[100] Code ↔ Paper doi:10.21769/bioprotoc.5801 [paper, repository]

Quantitative Analysis of Axonal Degeneration and TDP-43 Aggregation in Compartmentalized Human iPSC-Derived Motor Neuron-Myotube Co-cultures.

Journal: Bio-protocol

Authors' code: PerlsonLab/Bioprotocol (MIT)

Status: code verified, 4 files readable

[101] Code ↔ Paper doi:10.1038/s41467-026-77377-4 [paper, repository]

Ternary Neurexin-T178-PTPR complexes represent a pre-synaptic core-module of neuronal synapse organization.

Journal: Nature communications

Authors' code: phys2/belki (GPL-3.0)

Status: code verified, 98 files readable, 3 matches

Friday, 4 September 2026 (4 papers)

[102] doi:10.1016/j.ynirp.2026.100402 [paper]

Dopamine D2/3 receptors and functional connectivity during fear extinction: A PET-fMRI study.

Journal: Neuroimage. Reports

Status: code on request

[103] Code ↔ Paper doi:10.1038/s41467-026-72845-3 [paper, repository]

The membrane-to-cortex distance regulates mDia1 activity to control cortical mechanics.

Journal: Nature communications

Authors' code: jvermeil-biophys/CortExplore_PublicVersion (GPL-3.0), mahamidlab/actin_cortex_analysis (GPL-3.0)

Status: code verified, 59 files readable, 4 matches

[104] Code ↔ Paper doi:10.1007/s00429-026-03172-y [paper, repository]

Differential effects of acute, chronic, and social defeat stress on microglial morphology in the basolateral and central amygdala, and the medial and lateral habenula.

Journal: Brain structure & function

Authors' code: Jorvalgl/Thresholderer (GPL-3.0)

Status: code verified, 2 files readable

[105] doi:10.3892/ijmm.2026.5973 [paper, data]

Effect of MALT1 inhibition by MI‑2 on the microglial phenotype switch, inflammatory cytokine secretion, neuronal loss and oxidative stress in Alzheimer's disease.

Journal: International journal of molecular medicine

Status: data only, 1 dataset cited

Thursday, 3 September 2026 (6 papers)

[106] doi:10.1016/j.isci.2026.117380 [paper, data]

<i>N</i>-propargylputrescine as a minimal-tag probe for imaging putrescine dynamics in cellular homeostasis and stress.

Journal: iScience

Status: code on request, 1 dataset cited

[107] doi:10.1016/j.isci.2026.117343 [paper, data]

Zebrafish larvae reveal early neuropathology and host responses to nervous necrosis virus.

Journal: iScience

Status: data only, 2 datasets cited

[108] doi:10.1016/j.isci.2026.117278 [paper]

Altered striatal long-term potentiation in the eIF4E-TG mouse model of autism spectrum disorder.

Journal: iScience

Status: code on request

[109] Code ↔ Paper doi:10.1162/imag.a.1354 [paper, repository]

Development of a 24-channel 3T phased-array coil for fMRI in awake monkeys: Mitigating spatiotemporal artifacts in ferumoxytol-weighted functional connectivity estimation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: RIKEN-BCIL/bcil (no license)

Status: code verified, 12 files readable

[110] Code ↔ Paper doi:10.1073/pnas.2532946123 [paper, repository]

<i>Hex</i>-MASP for mapping the whole-tissue spatial proteome and the intrabrain distribution of monoclonal antibodies.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: JunQu-Lab/MAsP (Apache-2.0)

Status: code verified, 10 files readable, 2 matches

[111] Code ↔ Paper doi:10.7554/elife.109104 [paper, repository]

Complementary vertebrate <i>Wac</i> models exhibit phenotypes relevant to DeSanto-Shinawi Syndrome.

Journal: eLife

Authors' code: nordneurogenomicslab/publications (no license)

Status: code verified, 14 files readable, 3 matches

Wednesday, 2 September 2026 (7 papers)

[112] Code ↔ Paper doi:10.1016/j.isci.2026.117412 [paper, repository]

Transcriptomic landscape of microglia in mouse models of social dysfunction and oxytocin-mediated recovery.

Journal: iScience

Authors' code: MasaTsurutani/Transcriptomic-Landscape-of-Microglia-in-Mouse-Models-of-Social-Dysfunction-and-Oxytocin-Mediated (no license)

Status: empty repository, 1 file readable

[113] Code ↔ Paper doi:10.1038/s44400-026-00125-4 [paper, repository]

Regulators of interferon-responsive microglia uncovered by Genome-wide CRISPRi screening.

Journal: NPJ dementia

Authors' code: immunogenomics/presto (no license), reetm09/mixscale (no license)

Status: code verified, 45 files readable, 5 matches

[114] Code ↔ Paper doi:10.1038/s41467-026-77302-9 [paper, repository]

Identification and validation of central amygdala FGFR1 as a therapeutic target for alcohol use disorder using single-nucleus sequencing in rats.

Journal: Nature communications

Authors' code: leohog/Fgfr1_analysis (MIT)

Status: code verified, 3 files readable, 4 matches

[115] Code ↔ Paper doi:10.1126/sciadv.aed2952 [paper, repository]

Activation of transposable elements is linked to a region- and cell type-specific interferon response in Parkinson's disease.

Journal: Science advances

Authors' code: Zenodo 7589548 (other-open), molecular-neurogenetics.github.io/truster (no license), Zenodo 17434560 (CC-BY-4.0), molecular-neurogenetics/pd_asap_garza2025 (MIT)

Status: code verified, 394 files readable, 17 matches

[116] Code ↔ Paper doi:10.1126/sciadv.aeb3209 [paper, repository]

The actomyosin cortex controls t-tubule remodeling in skeletal muscle.

Journal: Science advances

Authors' code: Zenodo 28838 (other-open), tferr/scripts (GPL-3.0)

Status: code verified, 58 files readable, 2 matches

[117] Code ↔ Paper doi:10.1126/sciadv.adu3955 [paper, repository]

Defective EV-mediated transport of SHH alters neural fate specification in EPM1 epilepsy.

Journal: Science advances

Authors' code: coolbutuseless/ggpattern (MIT), VeronicaMP/Defective-EV-Mediated-Transport-of-SHH-Alters-Neural-Fate-Specification-in-EPM1-epilepsy (MIT), Zenodo 21453507 (MIT)

Status: code verified, 118 files readable, 7 matches

[118] Code ↔ Paper doi:10.1126/sciadv.aef9406 [paper, repository]

Fluorescent protein ticker tape (FPTT): Multiplexed recording of transcriptional dynamics in living cells and in vivo.

Journal: Science advances

Authors' code: Zenodo 20259137 (CC-BY-4.0)

Status: code verified

Tuesday, 1 September 2026 (23 papers)

[119] doi:10.1111/ejn.70665 [paper]

Baseline Dynamics and Sleep Loss-Driven Changes of Electrocorticographic Aperiodic Properties Are Altered in Mice Lacking Neuroligin-2.

Journal: The European journal of neuroscience

Status: code on request

[120] Code ↔ Paper doi:10.1111/jnc.70552 [paper, repository]

Altered Retinal Dopamine Homeostasis in Murine Models of Retinitis Pigmentosa.

Journal: Journal of neurochemistry

Authors' code: UmairSeemab/RNAseqData (no license)

Status: code verified, 4 files readable, 2 matches

[121] doi:10.3389/fnins.2026.1950353 [paper]

A neuron-distributed DEK integrates ac4C modification and neuroinflammation in pathogenesis of Parkinson disease: evidence from Mendelian randomization, multi-omics and <i>in vitro</i> validation.

Journal: Frontiers in neuroscience

Status: code on request

[122] doi:10.1097/md.0000000000050324 [paper, data]

Transcriptomic integration reveals immune heterogeneity in vascular dementia and identifies ELF2 as a candidate therapeutic target.

Journal: Medicine

Status: data only, 1 dataset cited

[123] Code ↔ Paper doi:10.1021/acs.jcim.6c01299 [paper, repository]

Targeting BCL-2 through Deep Learning-Based Drug Repurposing: A Multimodal Approach Combining Diffusion-Based Generative Modeling, Neural Relational Inference, and In Vitro Validation.

Journal: Journal of chemical information and modeling

Authors' code: DurdagiLab/Neuralplexer_Ligand_Scoring (MIT), DurdagiLab/Automate-Neural-relational-inference-NRI- (MIT)

Status: code verified, 17 files readable, 1 match

[124] Code ↔ Paper doi:10.1002/alz.71823 [paper, repository]

Cellular transcriptomic signatures underpinning the heterogeneity of depression in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: NCTrailRunner/NPS_manuscript (no license)

Status: code verified, 23 files readable, 8 matches

[125] Code ↔ Paper doi:10.1111/jnc.70551 [paper, repository]

Synaptobrevin-2 Containing Extracellular Vesicles Are Rapidly Incorporated Into Mammalian Neurons via a Dynamin-Dependent Pathway.

Journal: Journal of neurochemistry

Authors' code: melikelakadamyali/StormAnalysisSoftware (GPL-3.0)

Status: code verified, 243 files readable, 2 matches

[126] Code ↔ Paper doi:10.1098/rsob.260120 [paper, repository]

Assessment of adult structural plasticity in Drosophila neurons.

Journal: Open biology

Authors' code: FranTassara/MorphoScope (MIT), Zenodo 17901990 (CC-BY-4.0), doi:10.6084/m9.figshare.c.8627737 (no license)

Status: code verified, 11 files readable, 6 matches

[127] doi:10.1111/ejn.70655 [paper, data]

Investigating the Contribution of the Imprinted Gene Asb4 to Parental Care.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[128] doi:10.1002/alz.71804 [paper, data]

A meta-refined human Alzheimer's disease-associated gene subset shows partial mouse-model pathway correspondence and limited cross-cohort machine-learning transportability.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[129] Code ↔ Paper doi:10.1111/mec.70527 [paper, repository]

Epigenetic Changes Associated With a Phenotypic Transition in Namibian Cheetahs.

Journal: Molecular ecology

Authors' code: vullioud/Vullioud_et_al_2026_Molecular_Ecology_scripts (no license)

Status: code verified, 20 files readable, 12 matches

[130] Code ↔ Paper doi:10.1111/jne.70257 [paper, repository]

A symmetric systemic challenge elicits a right-biased response mediated by vasopressin signaling.

Journal: Journal of neuroendocrinology

Authors' code: YaromirKo/biostatistics-wd (MIT)

Status: code verified, 25 files readable, 4 matches

[131] doi:10.2147/jep.s630837 [paper, data]

<i>Syzygium aromaticum</i> Attenuates Cerebellar Oxidative Stress: An Integrated in silico, in vitro, and in vivo Evaluation of Multi-Target Antioxidant Mechanisms.

Journal: Journal of experimental pharmacology

Status: data only, 1 dataset cited

[132] doi:10.1096/fj.202603109r [paper, data]

Stressor- and Tissue-Specific Regulation of the Corticotropin-Releasing Factor System Across Epithelial Tissues in Rainbow Trout.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[133] Code ↔ Paper doi:10.1162/imag.a.1342 [paper, repository]

Hyperpolarized <sup>13</sup>C-bicarbonate production correlates with excitatory neuron distribution in the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 20575695 (CC-BY-4.0), brinuthayakumar/hpmr-genetranscript_imagingneuroscience (no license)

Status: code verified, 19 files readable, 3 matches

[134] Code ↔ Paper doi:10.1002/hbm.70627 [paper, repository]

Investigating the Contribution of Molecular-Enriched Functional Connectivity to Brain-Age Analysis.

Journal: Human brain mapping

Authors' code: ottaviadipasquale/react-fmri (MIT)

Status: code verified, 5 files readable

[135] Code ↔ Paper doi:10.1101/gr.280394.124 [paper, repository]

De novo structural variants in autism spectrum disorder disrupt distal regulatory interactions of neuronal genes.

Journal: Genome research

Authors' code: ketringjoni/SuPreMo (no license)

Status: code verified, 16 files readable, 7 matches

[136] Code ↔ Paper doi:10.1073/pnas.2609814123 [paper, repository]

Genetic architectures of brain-related traits are shaped by strong selective constraints.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: bulik/ldsc (GPL-3.0), huishengz/cns-selection (no license)

Status: code verified, 72 files readable, 10 matches

[137] Code ↔ Paper doi:10.1093/gbe/evag222 [paper, repository]

Genomic Signatures of Selection Are Enriched in Differentially Expressed Genes in Sticklebacks Adapting to Contrasting Environments.

Journal: Genome biology and evolution

Authors' code: z0on/tag-based_RNAseq (no license)

Status: code verified, 30 files readable

[138] doi:10.1093/brain/awag043 [paper, data]

Cytomegalovirus-induced T cell responses accelerate Alzheimer's disease progression in mice.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[139] Code ↔ Paper doi:10.1002/glia.70201 [paper, repository]

Dorso-Ventral and Night-Day Regulation of Extracellular K<sup>+</sup> Dynamics in Mouse Hippocampal Astrocytes.

Journal: Glia

Authors' code: Nari-KIANI/Glia_3740732_Data (CC-BY-4.0), Zenodo 20933397 (CC-BY-4.0)

Status: code verified, 16 files readable, 4 matches

[140] doi:10.1002/npr2.70150 [paper]

Sleep Deprivation and Neuronal Hyperexcitation Share Transcriptomic Signatures.

Journal: Neuropsychopharmacology reports

Status: data only

[141] doi:10.1093/brain/awag033 [paper, data]

Impairment of hippocampal gamma oscillations, mitochondria and neurovascular function in CADASIL.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

Monday, 31 August 2026 (4 papers)

[142] Code ↔ Paper doi:10.1002/advs.77453 [paper, repository]

Tau Aggregate Imaging and Transcriptomics of Alzheimer's Disease Brain at Different Stages of Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 15635269 (MIT), dboeken/boeken_tauopathies (MIT)

Status: code verified, 11 files readable, 1 match

[143] doi:10.1016/j.ebiom.2026.106451 [paper, data]

STX1B variant-specific synaptic dysfunction is associated with network hyperexcitability in human iPSC-derived neurons.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[144] Code ↔ Paper doi:10.2147/jpr.s619982 [paper, repository]

Spatially Contextualized Integrative Genomics Highlights Neuronal and Glial Regulatory Programs in Low Back Pain.

Journal: Journal of pain research

Authors' code: zza070952-collab/LBP_brain_eQTL_spatial_genomics (no license)

Status: code verified, 36 files readable, 20 matches

[145] doi:10.3390/ijms27177801 [paper, data]

Expression of the Human R163C-<i>RYR1</i> Gain-of-Function Mutation Modified 2,2',3,5',6-Pentachlorobiphenyl (PCB 95) Developmental Neurotoxicity in Weanling Mice.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Sunday, 30 August 2026 (2 papers)

[146] Code ↔ Paper doi:10.1113/ep093939 [paper, repository]

Temperature dependence of HCN channel kinetics: A systematic comparison across mammalian isoforms and species.

Journal: Experimental physiology

Authors' code: channelpedia.net (no license)

Status: code verified

[147] Code ↔ Paper doi:10.3390/s26175501 [paper, repository]

Evaluation of a Hybrid Neural-Polynomial Deep Q-Network for Switching-Aware Spectrum Selection in a Controlled Radio-Frequency Measurement-Replay Testbed.

Journal: Sensors (Basel, Switzerland)

Authors' code: TheRyans520/HNPDQN (no license)

Status: code verified, 67 files readable, 40 matches

Saturday, 29 August 2026 (2 papers)

[148] Code ↔ Paper doi:10.1002/advs.202600020 [paper, repository]

Early Retinal UCHL1 Dysregulation Coupled With Synaptic Loss Reflects Alzheimer's Disease Severity.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Xomicsdatascience/Ubiquitin_Ad (no license)

Status: code verified, 2 files readable, 1 match

[149] Code ↔ Paper doi:10.1038/s41467-026-77170-3 [paper, repository]

DNA methylation profiling identifies long-range epigenetic silencing of clustered protocadherins as a key determinant of meningioma progression.

Journal: Nature communications

Authors' code: MerkLabHIH/Meningioma_DNA_methylation_project (no license)

Status: code verified, 13 files readable, 22 matches

Friday, 28 August 2026 (4 papers)

[150] Code ↔ Paper doi:10.1126/sciadv.aee4940 [paper, repository]

Neuron-derived SPP1 instructs microglia to limit degeneration.

Journal: Science advances

Authors' code: doi:10.7910/dvn/wj0mji (no license)

Status: code found, still to be checked

[151] Code ↔ Paper doi:10.1126/sciadv.aed4172 [paper, repository]

Locomotion optimizes sensory representations through a computational principle shared by rodents and primates.

Journal: Science advances

Authors' code: Zenodo 20624372 (CC-BY-4.0), mlynarski-group/locomotion-modulation (no license)

Status: code verified, 64 files readable, 15 matches

[152] Code ↔ Paper doi:10.1038/s41594-026-01866-9 [paper, repository]

Structural and mechanistic insights into gating and allosteric modulation of GluN1-GluN3A NMDA receptors.

Journal: Nature structural & molecular biology

Authors' code: Zenodo 8161179 (CC-BY-4.0)

Status: code verified, 2 files readable

[153] doi:10.3389/fnagi.2026.1855522 [paper, data]

Astragaloside IV attenuates hypoxia-reoxygenation-induced endothelial senescence and vascular inflammation by modulating the NOTCH1/VCAM-1 axis.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

Thursday, 27 August 2026 (9 papers)

[154] doi:10.1085/jgp.202614039 [paper, data]

Tunable AMPA receptor function via recurrent evolution of heterotetramers.

Journal: The Journal of general physiology

Status: data only, 2 datasets cited

[155] doi:10.1085/jgp.202513926 [paper, data]

Characterization of an open-channel structure and lateral conduction pathway in the cation-selective pentameric ligand-gated ion channel, ELIC.

Journal: The Journal of general physiology

Status: data only, 1 dataset cited

[156] doi:10.1007/s10974-026-09738-x [paper, data]

Cloning and characterization of intermediate Homer1E of human skeletal muscle.

Journal: Journal of muscle research and cell motility

Status: data only, 1 dataset cited

[157] doi:10.1002/advs.77364 [paper, data]

ZBTB18 Dysfunction Promotes Neuropathic Pain via CHD4-based Epigenetic Disinhibition of CLIC1 Channels in Sensory Neurons.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[158] Code ↔ Paper doi:10.1371/journal.pbio.3003955 [paper, repository]

Beat- and Side-family cell-surface molecules are expressed combinatorially in the partner neurons of the olfactory circuit in Drosophila.

Journal: PLoS biology

Authors' code: volkanlab/beats_sides_olfactory_circuit_Drosophila_Duan_PlosBio2026 (MIT), Zenodo 21652764 (CC-BY-4.0)

Status: code verified, 18 files readable, 9 matches

[159] Code ↔ Paper doi:10.1038/s41588-026-02722-8 [paper, repository]

A multiancestry polygenic risk score for Alzheimer's disease is associated with cognitive decline and neuropathological hallmarks in diverse populations.

Journal: Nature genetics

Authors' code: nkurniansyah/PRSsum_Simple (no license), nkurniansyah/Alzheimer_PRS (no license), nkurniansyah (no license), Zenodo 20818015 (CC-BY-4.0)

Status: code verified, 16 files readable, 8 matches

[160] doi:10.1186/s40035-026-00570-4 [paper, data]

HSPA8 orchestrates SNARE complex assembly to drive extracellular vesicle-mediated spread of p-tau217 in Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[161] Code ↔ Paper doi:10.1093/braincomms/fcag326 [paper, repository]

Brain multiomic profiling identifies tau-related transcriptomic dysregulation in Alzheimer's disease.

Journal: Brain communications

Authors' code: synapse.org/synapse:syn75046458 (no license)

Status: code verified

[162] doi:10.3390/ijms27177675 [paper, data]

LncRNA Gas5, a Target of the Nonsense-Mediated Decay Pathway in the Brain, Regulates Neuroinflammation and Neurodegenerative Disease Pathways in a Tauopathy Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Wednesday, 26 August 2026 (11 papers)

[163] doi:10.1007/s12035-026-06133-y [paper, data]

Systematic Review and Transcriptomic Meta-analysis of Environmental Enrichment Reveal Core Molecular Programs of Brain Plasticity.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[164] Code ↔ Paper doi:10.1177/0271678x261485404 [paper, repository]

The microdialysis-derived lactate-pyruvate gradient indicates anaerobic activity after brain injury.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: msb-jr/LPG (MIT)

Status: code verified, 18 files readable, 15 matches

[165] doi:10.1186/s43556-026-00546-w [paper, data]

Silencing arachidonate 15-lipoxygenase alleviates hypoxia-induced cognitive impairment through the mediation of phospholipase A2 group IVC-LPC18:0 to suppress ferroptosis.

Journal: Molecular biomedicine

Status: data only, 1 dataset cited

[166] doi:10.1371/journal.pone.0356781 [paper, data]

Bovine serum albumin sensitizes the mouse brain to lipopolysaccharides.

Journal: PloS one

Status: data only, 4 datasets cited

[167] doi:10.1126/sciadv.aed0049 [paper, data]

An axon-intrinsic loop restricts nerve regeneration through axonal protein synthesis.

Journal: Science advances

Status: data only, 1 dataset cited

[168] Code ↔ Paper doi:10.1038/s41467-026-76927-0 [paper, repository]

State-dependent binding of the wedge domain controls inactivation of the mechanosensitive ion channel PIEZO1.

Journal: Nature communications

Authors' code: StefanLechnerUKE/PIEZO1_wedge_analysis (no license), Zenodo 21363175 (CC-BY-4.0)

Status: code verified, 28 files readable, 4 matches

[169] doi:10.1038/s41467-026-76468-6 [paper, data]

Cell autonomous regional differences in oligodendrocyte lineage development and responses to oncohistone H3.3 K27M.

Journal: Nature communications

Status: data only, 2 datasets cited

[170] doi:10.1038/s41467-026-77103-0 [paper, data]

Human iPSC-cardiomyocyte-aggregate cell therapy in non-human primates and correlation of heart recovery with contractile and electrophysiological cardiomyocyte properties.

Journal: Nature communications

Status: data only, 1 dataset cited

[171] doi:10.3389/fcimb.2026.1806356 [paper, data]

Global research trends in enteric nervous system and gut microbiota: a bibliometric analysis (2005-2025).

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[172] doi:10.3389/fimmu.2026.1937738 [paper, data]

Multi-regional transcriptomic analysis reveals early nociceptive and neuroinflammatory alterations in APP/PS1 mice.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[173] doi:10.3389/fncel.2026.1908231 [paper, data]

Integrative transcriptomic- neuroimaging analysis reveals polygenic correlates of interhemispheric functional decoupling in ischemic stroke.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

Tuesday, 25 August 2026 (4 papers)

[174] doi:10.1007/s12035-026-06155-6 [paper, data]

Sigma-1 Expression in Chronic Mouse Models of Temporal Lobe Epilepsy.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[175] doi:10.2147/dddt.s627186 [paper, data]

Esketamine Attenuates Postoperative Neurocognitive Disorder in Aged Mice: Associations with Bioenergetic Remodeling in Hippocampal CD11b-Enriched Cell Fractions and Glycolysis-Related Signaling.

Journal: Drug design, development and therapy

Status: data only, 1 dataset cited

[176] Code ↔ Paper doi:10.1016/j.isci.2026.117309 [paper, repository]

Intracellular regulation of a serotonin-gated ion channel links receptor trafficking to memory.

Journal: iScience

Authors' code: slowkow/ggrepel (GPL-3.0)

Status: code verified, 40 files readable

[177] doi:10.3389/fnmol.2026.1844343 [paper, data]

Molecular abnormalities scale across three models of cerebral injury.

Journal: Frontiers in molecular neuroscience

Status: data only, 2 datasets cited

Monday, 24 August 2026 (5 papers)

[178] Code ↔ Paper doi:10.1523/eneuro.0121-26.2026 [paper, repository]

Hippocampal Gene Expression in Zebra Finches Reveals Sex- and Subregion-Specific Topographies.

Journal: eNeuro

Authors' code: ATayl4908/ZB-DGE-analysis (no license)

Status: dead link

[179] doi:10.1007/s12035-026-06127-w [paper, data]

Disrupting fzd9b in Zebrafish Recapitulates Stress- and Anxiety-Like Behaviours Relevant to Williams Syndrome.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[180] Code ↔ Paper doi:10.1016/j.isci.2026.117346 [paper, repository]

Spatial transcriptomics of <i>Ciona</i> adult brains reveals functional zonalization and insights into neural gland function.

Journal: iScience

Authors' code: figshare 31915545 (CC-BY-4.0), xzengComBio/Ciona_ST (no license)

Status: code verified, 12 files readable, 5 matches

[181] doi:10.3389/fonc.2026.1927290 [paper, data]

Arylsulfatase D promotes malignant phenotypes in glioblastoma cells and is linked to altered Hippo pathway phosphorylation.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[182] doi:10.3390/biology15171446 [paper, data]

Chronic Stress Induces Retinal Ganglion Cell Degeneration Featuring Reduced Density, Altered Intrinsic Electrophysiology, and Light Responses.

Journal: Biology

Status: data only, 1 dataset cited

Sunday, 23 August 2026 (1 paper)

[183] doi:10.3390/ijms27177542 [paper, data]

Assessment of the Association of Periodontitis and Diabetes Mellitus with Alzheimer's Disease in a Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 22 August 2026 (2 papers)

[184] doi:10.1038/s41598-026-66143-7 [paper, data]

Recombinant CXCL16 reduces brain injury by modulating microglial phenotype and attenuating apoptosis in acute ischemic stroke.

Journal: Scientific reports

Status: data only, 1 dataset cited

[185] Code ↔ Paper doi:10.3390/jcm15176501 [paper, repository]

Saliency-Curated Deep Learning for Predicting Receptor Status in Breast Cancer Brain Metastases.

Journal: Journal of clinical medicine

Authors' code: Const1357/BCBM-RadioGenomics-Classifier (no license)

Status: code verified, 17 files readable, 12 matches

Friday, 21 August 2026 (11 papers)

[186] Code ↔ Paper doi:10.64898/2026.08.18.26360725 [paper, repository]

Temporal pole blurring in hippocampal sclerosis reflects seizure-disrupted myelination

Journal: medRxiv (preprint)

Authors' code: MELDProject/meld_graph (other), AliAfsharmoqaddam/NeoHipp (MIT)

Status: code verified, 124 files readable, 3 matches

[187] doi:10.1007/s00401-026-03062-x [paper]

Genetic subtypes of multiple sclerosis severity are uncoupled from inflammatory lesion burden.

Journal: Acta neuropathologica

Status: code on request

[188] doi:10.1002/advs.77115 [paper]

RNA Promotes Synapsin Condensates That Organize Synaptic Vesicles in Live Neurons and Enable Localized Translation in Reconstituted System.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[189] doi:10.1371/journal.pgen.1012260 [paper, data]

Hippo signaling regulates cuticle pigmentation and dopamine metabolism in Drosophila.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[190] Code ↔ Paper doi:10.1126/sciadv.aec3893 [paper, repository]

Enriched experience increases reciprocal synaptic connectivity and coding sparsity in higher-order cortex.

Journal: Science advances

Authors' code: figshare 31878316 (CC-BY-4.0)

Status: code verified

[191] Code ↔ Paper doi:10.26508/lsa.202503546 [paper, repository]

Interactions of LINE-1 ORF1p with proteins and chromatin suggest a role in neuronal physiology.

Journal: Life science alliance

Authors' code: orion-cirb/Axon_Skel_Analyzer (no license), bioinfo-pf-curie/atac-seq (CECILL-2.1)

Status: code verified, 13 files readable, 1 match

[192] doi:10.1186/s40478-026-02402-y [paper, data]

Overactivation of SHH signaling induces a cascade of dedifferentiation and oncogenesis in a new mouse model for choroid plexus carcinoma.

Journal: Acta neuropathologica communications

Status: data only, 5 datasets cited

[193] doi:10.3390/nu18162744 [paper, data]

<i>Cistanche tubulosa</i> (Schrenk) Wight Extract Ameliorates Learning and Spatial Memory Abilities in High-Altitude Hypobaric Hypoxia Rats.

Journal: Nutrients

Status: data only, 1 dataset cited

[194] doi:10.1038/s41467-026-77016-y [paper, data]

YTHDC1 functions as a molecular chaperone to suppress ALS-linked hnRNPA1 mutants from aggregation.

Journal: Nature communications

Status: data only, 2 datasets cited

[195] doi:10.3389/fcell.2026.1876873 [paper, data]

Multi-omics integration reveals TIM-4 as a master regulatory hub of neuroinflammation and neuronal cell death.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[196] doi:10.3389/fmicb.2026.1907120 [paper, data]

Dual modulation of the NLRP3/CASPASE-1 inflammasome pathway and gut microbial metabolism: the antidepressant mechanism of puerarin.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

Thursday, 20 August 2026 (3 papers)

[197] Code ↔ Paper doi:10.1016/j.stemcr.2026.103053 [paper, repository]

Development and validation of a long-term co-maturation protocol for human stem cell-derived microglia and neuronal networks.

Journal: Stem cell reports

Authors' code: FelixKrueger/TrimGalore (GPL-3.0)

Status: code verified, 31 files readable, 1 match

[198] doi:10.1038/s41467-026-76831-7 [paper, data]

Structural origins of species-specific differences in TRPV2 activation.

Journal: Nature communications

Status: data only, 2 datasets cited

[199] Code ↔ Paper doi:10.1002/imt2.70163 [paper, repository]

Spatial multi-omics unveils sphingolipid metabolic reprogramming within the retinal pathological niche.

Journal: iMeta

Authors' code: alserglab/fgsea (MIT), pienapple1/eyeball_STSM (no license)

Status: code verified, 99 files readable, 10 matches

Wednesday, 19 August 2026 (5 papers)

[200] doi:10.1080/17590914.2026.2691563 [paper, data]

Shared Transcriptomic and Epigenomic Signatures Between Traumatic Brain Injury and Music Exposure: An Integrative Proof of Concept.

Journal: ASN neuro

Status: data only, 1 dataset cited

[201] Code ↔ Paper doi:10.1126/sciadv.aeg3535 [paper, repository]

Undoing of firing rate adaptation enables invariant population codes.

Journal: Science advances

Authors' code: Zenodo 15937307 (CC-BY-4.0), gitlab.rlp.net/mrtlllab/brandao_ramirez_adaptation2024 (no license)

Status: code verified, 12 files readable

[202] Code ↔ Paper doi:10.1016/j.isci.2026.117228 [paper, repository]

Single-nucleus transcriptomics reveals cell type-specific remodeling and epilepsy-associated microglia.

Journal: iScience

Authors' code: VictoriaHo-Lab/snRNAseq-pilo (no license)

Status: code verified, 10 files readable, 11 matches

[203] Code ↔ Paper doi:10.3389/fragi.2026.1856979 [paper, repository]

A minimal three-arm oral regimen for healthspan: mechanistic alignment with transcriptomic signals from a large parental-lifespan GWAS.

Journal: Frontiers in aging

Authors' code: figshare 31951029 (CC-BY-4.0)

Status: empty repository

[204] doi:10.3389/fmicb.2026.1889475 [paper]

<i>Lactobacillus acidophilus</i> CICC 22162 alleviates sleep deprivation-induced cognitive impairment by remodeling gut microbiota and enhancing S-adenosylmethionine-mediated neuroimmune regulation.

Journal: Frontiers in microbiology

Status: data only

Tuesday, 18 August 2026 (4 papers)

[205] doi:10.1080/20008066.2026.2709174 [paper, data]

Exploring the shared genetic architecture between post-traumatic stress disorder (PTSD) and obstructive sleep apnea (OSA).

Journal: European journal of psychotraumatology

Status: data only, 1 dataset cited

[206] doi:10.1073/pnas.2610782123 [paper, data]

An upstream open reading frame represses translation of the neuronal potassium channel KCNQ2.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[207] doi:10.1016/j.xcrm.2026.102994 [paper, data]

Targeting of tripartite neuron-cancer-immune cell crosstalk augments response to chemotherapy and immunotherapy.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[208] doi:10.3389/fncel.2026.1888383 [paper, data]

From cellular regeneration toward functional integration: a 15-year bibliometric analysis of inner ear hair cell regeneration (2011-2025).

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

Monday, 17 August 2026 (7 papers)

[209] doi:10.1002/advs.77175 [paper, data]

TAB2 Causes Neuronal Damage by Aggravating Microglia-Mediated Neuroinflammation in Parkinson's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[210] doi:10.1186/s43556-026-00514-4 [paper, data]

Transcription-protein dissociation reveals disrupted cellular stress pathways in the prefrontal cortex of depression and schizophrenia subjects.

Journal: Molecular biomedicine

Status: data only, 1 dataset cited

[211] Code ↔ Paper doi:10.1038/s41467-026-76841-5 [paper, repository]

Stable clique membership in male mouse societies requires oxytocin-enabled social sensory states.

Journal: Nature communications

Authors' code: KelschLAB/NoSeMaze (GPL-3.0), KelschLAB/NoSeMaze-stableRichClubs (CC-BY-NC-ND-4.0)

Status: code verified, 132 files readable, 10 matches

[212] doi:10.3389/fphar.2026.1830927 [paper, data]

<i>Astragalus polysaccharide</i> alleviates neuropathology and cognitive deficits by modulating gut microbiota and neuroinflammation in an Alzheimer's disease model.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[213] doi:10.3389/fnins.2026.1913179 [paper, data]

Decoding astrocytic tryptophan metabolism in the pathogenesis of epilepsy: evidence from artificial intelligence-driven multi-omics and clinical validation.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[214] doi:10.31083/ap51694 [paper, data]

Imatinib-Induced Changes in Anxiety-Like Behaviors are Associated With Prefrontal Cortical Metabolic Remodeling in Mice.

Journal: Alpha psychiatry

Status: data only, 1 dataset cited

[215] Code ↔ Paper doi:10.1038/s41467-026-76762-3 [paper, repository]

PD-1 regulates CD4<sup>+</sup> T cell-mediated CD8<sup>+</sup> T cell responses in the brain to balance viral control and neuroinflammation.

Journal: Nature communications

Authors' code: elizabethproctor/Luminex-Data-Cleaning (GPL-3.0), stratton-lab/alexander-2025-cxcr (EUPL-1.2), Zenodo 21179919 (eupl-1.2), Zenodo 21243082 (CC-BY-4.0), Zenodo 21076315 (GPL-3.0)

Status: code verified, 17 files readable, 7 matches

Sunday, 16 August 2026 (1 paper)

[216] Code ↔ Paper doi:10.1186/s12711-026-01078-1 [paper, repository]

Functional genomic dissection and prediction of body size traits in pigs.

Journal: Genetics, selection, evolution : GSE

Authors' code: susjoh/wildsim (no license)

Status: code verified, 23 files readable

Saturday, 15 August 2026 (4 papers)

[217] doi:10.1002/advs.76803 [paper, data]

ICOS-ImmunoPET Monitors T Cell Activation After Combination Immune Checkpoint Blockade in a Mouse Model of Melanoma Brain Metastasis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[218] doi:10.1002/advs.77053 [paper, data]

Extracellular CIRP Dysregulates Microglial Efferocytosis in Acute Ischemic Stroke via the TLR4/miR-155/MafB Axis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[219] Code ↔ Paper doi:10.1038/s41467-026-76688-w [paper, repository]

Transcriptome profiling of human hypothalamic agouti-related protein and proopiomelanocortin neurons regulating energy homeostasis.

Journal: Nature communications

Authors' code: goczbalazs/PRJNA1305226_1305334 (no license)

Status: code verified, 5 files readable, 6 matches

[220] Code ↔ Paper doi:10.1038/s41467-026-76682-2 [paper, repository]

Odorant receptor coexpression and multi-expression in the dengue mosquito.

Journal: Nature communications

Authors' code: mcbridelab/Adavi_2024_snRNAseqAaegAntennae (no license)

Status: code verified, 6 files readable, 16 matches

Friday, 14 August 2026 (14 papers)

[221] doi:10.1002/advs.202519669 [paper, data]

Mr BMT Achieves Systemic Macrophage Replacement With Preservation of Tissue Homeostasis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[222] Code ↔ Paper doi:10.7554/elife.93640 [paper, repository]

Sibling chimerism among microglia in marmosets.

Journal: eLife

Authors' code: broadinstitute/Drop-seq (MIT), lh3/bwa (GPL-3.0), satijalab/seurat (other), IanevskiAleksandr/sc-type (GPL-3.0), satijalab/sctransform (GPL-3.0), PMBio/peer (GPL-2.0)

Status: code verified, 2,573 files readable, 6 matches

[223] doi:10.1371/journal.pone.0355857 [paper]

Environmental enrichment attenuates chronic stress-induced disruptions in the gut microbiota, intestinal barrier, and brain.

Journal: PloS one

Status: data only

[224] Code ↔ Paper doi:10.1371/journal.pbio.3003931 [paper, repository]

A single-cell transcriptomic atlas reveals the emergence of medusa-specific cell states in the scyphozoan Aurelia coerulea.

Journal: PLoS biology

Authors' code: technau/AureliaAtlas (no license), Zenodo 21132158 (CC-BY-4.0)

Status: code verified, 14 files readable, 16 matches

[225] Code ↔ Paper doi:10.1126/sciadv.aeg3223 [paper, repository]

The extreme diversity of retinal amacrine cells has deep evolutionary roots.

Journal: Science advances

Authors' code: shekharlab/AmacrineCells (MIT), Zenodo 20451319 (MIT)

Status: code verified, 52 files readable, 30 matches

[226] Code ↔ Paper doi:10.1126/sciadv.adz4123 [paper, repository]

Highly attenuated dendritic propagation of isolated synaptic potentials in vivo.

Journal: Science advances

Authors' code: NTCColumbia (no license)

Status: code verified

[227] doi:10.1126/sciadv.aec4153 [paper, data]

An octopamine-glutamate cotransmitting neuron gates aggressive escalation through layered inhibition in <i>Drosophila</i>.

Journal: Science advances

Status: data only, 6 datasets cited

[228] doi:10.1038/s41588-026-02709-5 [paper, data]

PLCG2 downregulation impairs synaptic function and increases Alzheimer's disease hallmarks in neuronal cultures.

Journal: Nature genetics

Status: data only, 3 datasets cited

[229] Code ↔ Paper doi:10.1186/s44477-026-00045-w [paper, repository]

Proteomic analysis of human chronic traumatic encephalopathy brain implicates proteasome and ribosome dysfunction in disease severity.

Journal: Molecular neurodegeneration advances

Authors' code: BU-Neuromics/cte-proteomics-2026 (no license)

Status: code verified, 10 files readable, 9 matches

[230] doi:10.3390/biom16081187 [paper, data]

Genetic Diversity and Runs of Homozygosity in Three Masu Salmon (<i>Oncorhynchus masou</i>) Populations Based on Whole-Genome Resequencing Data.

Journal: Biomolecules

Status: data only, 1 dataset cited

[231] Code ↔ Paper doi:10.3390/ijms27167275 [paper, repository]

Integrative Multi-Omics Analysis of Multiple Sclerosis Reveals Cell-Type-Specific Regulatory Landscapes and Discordant Methylation-Expression Coupling.

Journal: International journal of molecular sciences

Authors' code: alperbulbul1/MS_Omics_Data_Analysis (MIT)

Status: code verified, 104 files readable, 40 matches

[232] Code ↔ Paper doi:10.1016/j.omtn.2026.103063 [paper, repository]

<i>In vivo</i> genome editing of central nervous system SIV reservoirs in ART-suppressed rhesus macaques.

Journal: Molecular therapy. Nucleic acids

Authors' code: DamLabResources/umi-pipeline-nf-HIV (MPL-2.0), DamLabResources/outerspace (no license)

Status: code verified, 93 files readable, 4 matches

[233] doi:10.1038/s41467-026-76725-8 [paper, data]

TogoPhosTAC as a delivery-ready platform for targeted protein dephosphorylation.

Journal: Nature communications

Status: data only, 1 dataset cited

[234] Code ↔ Paper doi:10.1038/s41467-026-76676-0 [paper, repository]

Determinants of functional burden pleiotropy and gene dosage responses across human traits.

Journal: Nature communications

Authors' code: martineaujeanlouis.github.io/mind-genesparallelcnv (no license), linnarsson-lab/adult-human-brain (BSD-2-Clause), SayehKazem/FunBurd (MIT), Zenodo 17038354 (MIT), funburd.readthedocs.io (no license)

Status: code verified, 114 files readable, 21 matches

Thursday, 13 August 2026 (10 papers)

[235] doi:10.64898/2026.08.12.26360241 [paper, data]

Diffusion kurtosis imaging (gen)omics unravels mechanisms of cerebral small vessel disease

Journal: medRxiv (preprint)

Status: data only, 1 dataset cited

[236] Code ↔ Paper doi:10.1038/s12276-026-01794-0 [paper, repository]

Extinction-restraint intervention eradicates fear memory encoded in BLA engram cells via D2 receptor-mediated dopaminergic modulation from locus coeruleus.

Journal: Experimental & molecular medicine

Authors' code: BehavioralLAB/Fiberphotometry (no license)

Status: code verified, 1 file readable

[237] Code ↔ Paper doi:10.1002/2211-5463.70322 [paper, repository]

Identification and characterisation of calcitonin receptor isoforms expressed in glioblastoma derived glioma stem and U-87 MG cells.

Journal: FEBS open bio

Authors' code: shwetajoshi-15/discoAnt (no license)

Status: code verified, 6 files readable

[238] doi:10.7554/elife.105386 [paper, data]

Parkinson's disease-associated <i>PINK1</i> loss disrupts ensheathing glia and causes dopaminergic neuron synapse loss.

Journal: eLife

Status: code on request, 1 dataset cited

[239] Code ↔ Paper doi:10.1371/journal.pone.0355739 [paper, repository]

The effects of blast-induced traumatic brain injury on brain cellular mechanics and differentiation.

Journal: PloS one

Authors' code: kaggle.com/datasets/masudnabila (no license)

Status: dead link

[240] doi:10.1016/j.jbc.2026.113447 [paper, data]

TIMELESS promotes glioma stemness and malignancy through JAK-STAT3 pathway.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[241] Code ↔ Paper doi:10.1007/s12035-026-06122-1 [paper, repository]

Alternative Polyadenylation in the Brain is Modulated by Chronic Ethanol Exposure in a Sex- and Cell Type-Specific Manner.

Journal: Molecular neurobiology

Authors' code: alleninstitute/abc_atlas_access (BSD-2-Clause)

Status: code verified, 24 files readable

[242] doi:10.3390/ijms27167240 [paper, data]

1-Piperidine Propionic Acid Inhibits PAR2/SerpinB3 Signaling and Reduces Glioblastoma Tumor Aggressiveness.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[243] Code ↔ Paper doi:10.3389/fnagi.2026.1839445 [paper, repository]

The molecular mechanisms of Guizhi Fuling Pills in ameliorating Alzheimer's disease-like cognitive impairment: insights from transcriptomics, metabolomics, and gut microbiome.

Journal: Frontiers in aging neuroscience

Authors' code: OpenGene/fastp (MIT), tanghaibao/GOatools (BSD-2-Clause)

Status: code verified, 204 files readable, 2 matches

[244] Code ↔ Paper doi:10.1038/s41467-026-76812-w [paper, repository]

Assessing molecular, cellular and transcriptomic bases of laminar perfusion and cytoarchitecture coupling in the human cortex.

Journal: Nature communications

Authors' code: FanhuaGuo/ASL-Bigbrain-CCSI (MIT), Zenodo 21363179 (MIT)

Status: code verified, 70 files readable, 15 matches

Wednesday, 12 August 2026 (11 papers)

[245] doi:10.64898/2026.08.11.26359568 [paper, data]

<i>TMEM106B</i> haplotypes show distinct associations with tau and TDP-43 pathologies in the aging brain

Journal: medRxiv (preprint)

Status: data only, 1 dataset cited

[246] doi:10.1002/advs.77111 [paper, data]

Endothelial miR-15a/16-1 Regulation of SYNE1 Mediates Structural and Functional Recovery after Traumatic Brain Injury.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[247] Code ↔ Paper doi:10.1007/s12311-026-02068-1 [paper, repository]

Generation and Validation of an Acan-Cre Mouse Line to Selectively Label Class-B Excitatory Neurons of the Cerebellar Nuclei.

Journal: Cerebellum (London, England)

Authors' code: kebschulllab/Acan-Cre-cerebellar-nucleiBARseq3 (no license)

Status: dead link

[248] doi:10.1016/j.celrep.2026.117827 [paper]

Pleiotrophin regulates presynaptic assembly and function through heparan sulfate-dependent binding to neurexin1.

Journal: Cell reports

Status: code on request

[249] Code ↔ Paper doi:10.1126/sciadv.aee9298 [paper, repository]

Synaptic zinc plasticity shapes adaptive and maladaptive cortical plasticity following cochlear injury.

Journal: Science advances

Authors' code: Zenodo 8018820 (CC-BY-4.0)

Status: code verified, 111 files readable, 5 matches

[250] Code ↔ Paper doi:10.1016/j.cub.2026.07.041 [paper, repository]

Notch-mediated lateral inhibition is shaped by morphological differences to reinforce bias toward signal-sending or -receiving roles.

Journal: Current biology : CB

Authors' code: crou607/neurogenesis_analysis (AGPL-3.0), Zenodo 20612238 (apgl-v3)

Status: code verified, 56 files readable, 9 matches

[251] doi:10.1038/s41467-026-74906-z [paper, data]

Youth-associated protein TIMP2 regulates microglial state and function in healthy and aged mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[252] doi:10.1117/1.jbo.31.8.086005 [paper]

Label-free wide-field imaging of brain tumors using near-infrared endogenous fluorescence and reflectance normalization.

Journal: Journal of biomedical optics

Status: code on request

[253] doi:10.1016/j.isci.2026.116866 [paper]

Astrocytes mobilize a broader repertoire of lysosomal repair mechanisms than neurons.

Journal: iScience

Status: code on request

[254] doi:10.3389/fnins.2026.1929767 [paper, data]

Tracing fucosylation and astrocyte-associated pathogenic pattern in major depressive disorder: evidence from machine learning-based multi-omics and clinical validation.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[255] doi:10.1038/s41467-026-76683-1 [paper, data]

Inflammatory neuropathy in mouse and primate models of colorectal cancer.

Journal: Nature communications

Status: data only, 3 datasets cited

Tuesday, 11 August 2026 (13 papers)

[256] doi:10.7554/elife.109083 [paper, data]

Spine nanostructure profiling of cultured neurons from mouse models reveals a schizophrenia-linked role for Ecrg4.

Journal: eLife

Status: data only, 1 dataset cited

[257] doi:10.1002/advs.77085 [paper, data]

Targeting CXCR2 in Nociceptive Sensory Neurons Offers Novel Therapeutic Potentials for Postoperative Pain.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[258] doi:10.1038/s41467-026-75877-x [paper, data]

Structure of NHE6 and its lipid-mediated interactions regulating endosomal pH.

Journal: Nature communications

Status: data only, 2 datasets cited

[259] Code ↔ Paper doi:10.34133/csbj.0184 [paper, repository]

Cross-Species Multitask Learning with Molecular and ADME Descriptors for Liver Microsomal Metabolic Stability.

Journal: Computational and structural biotechnology journal

Authors' code: bmil-jnu/cross-species_metabolic_stability_prediction (no license)

Status: code verified, 26 files readable, 19 matches

[260] doi:10.1039/d6ra04733e [paper, data]

V600E biases the BRAF kinase domain toward an activation-compatible conformational ensemble through long-range dynamic rewiring.

Journal: RSC advances

Status: data only, 1 dataset cited

[261] doi:10.1016/j.isci.2026.116992 [paper]

Exemestane increases the number and improves the morphology of cultured pre-antral follicles from transmasculine ovarian cortical tissue.

Journal: iScience

Status: code on request

[262] doi:10.1016/j.isci.2026.117143 [paper, data]

Molecular heterogeneity and differential metabolic signatures in thymic adipocytes.

Journal: iScience

Status: code on request, 1 dataset cited

[263] doi:10.3389/fnagi.2026.1788991 [paper, data]

Plasma multi-miRNA models classify Alzheimer's, Parkinson's, and Lewy body dementia.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[264] doi:10.3389/fimmu.2026.1700109 [paper]

Integrated machine learning and transcriptomics reveal immune infiltration-related orthologous transcription genes in cerebral ischemic injury.

Journal: Frontiers in immunology

Status: data only

[265] doi:10.3390/cells15161445 [paper, data]

Utility of the Recombinase Driver CX3CR1-ERT2 Rat Strain in Nicotine Self-Administration.

Journal: Cells

Status: data only, 1 dataset cited

[266] doi:10.3390/antib15040073 [paper, data]

Acetylcholine Receptor Antibody Positivity, RNST Abnormality, and Thymoma Predict Generalization in Ocular Myasthenia Gravis: A South Korean Cohort Study.

Journal: Antibodies (Basel, Switzerland)

Status: data only, 1 dataset cited

[267] doi:10.1038/s41467-026-76368-9 [paper, data]

Integrative structural analysis of human endosomal NHE6 reveals a lipid-associated gate and disordered C-terminus.

Journal: Nature communications

Status: data only, 5 datasets cited

[268] Code ↔ Paper doi:10.1038/s41467-026-76232-w [paper, repository]

Th17 effector cytokines induce shared and distinct microglial and endothelial cell responses in a mouse model for post-streptococcal encephalitis.

Journal: Nature communications

Authors' code: AgalliuLab/s-pyogenes-scRNAseq (no license)

Status: code verified, 5 files readable, 14 matches

Monday, 10 August 2026 (7 papers)

[269] doi:10.1007/s10549-026-08050-z [paper]

Association of tumor Schwann cells with epithelial-mesenchymal transition and immune-suppressive microenvironment in triple-negative breast cancer.

Journal: Breast cancer research and treatment

Status: code on request

[270] doi:10.1371/journal.pgen.1011985 [paper, data]

Social isolation upregulates takeout expression in female Drosophila melanogaster to promote sucrose preference.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[271] Code ↔ Paper doi:10.1073/pnas.2619797123 [paper, repository]

Selective loss of primary cilia and neurotrophic signaling in G51D α-synuclein mice highlights a common pathway to Parkinson's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.4xgxd25r0 (no license)

Status: code verified

[272] doi:10.1080/19336896.2026.2710965 [paper, data]

Epigenetic changes associated with the progression of prion disease in Syrian hamsters (&lt;i&gt;Mesocricetus auratus&lt;/i&gt;).

Journal: Prion

Status: data only, 1 dataset cited

[273] Code ↔ Paper doi:10.1016/j.isci.2026.117038 [paper, repository]

Multi-region brain transcriptomes uncover two subtypes of aging individuals with differences in Alzheimer risk and the impact of &lt;i&gt;APOEε4&lt;/i&gt;.

Journal: iScience

Authors' code: anniejlee/multi-region-transcriptomes-aging-subtypes (no license)

Status: code verified, 3 files readable, 2 matches

[274] Code ↔ Paper doi:10.3389/fnmol.2026.1909269 [paper, repository]

Convergent functional networks of intrinsic activity alterations in temporal lobe epilepsy and their molecular correlates.

Journal: Frontiers in molecular neuroscience

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable

[275] Code ↔ Paper doi:10.1038/s41467-026-76522-3 [paper, repository]

Transcriptomic analysis of spinal V1 interneurons informs their multifunctional role in motor output.

Journal: Nature communications

Authors' code: Bikoff-Lab (no license), Bikoff-Lab/V1_KO_analysis (MIT)

Status: code verified, 5 files readable, 5 matches

Sunday, 9 August 2026 (1 paper)

[276] doi:10.3390/ijms27167140 [paper, data]

Astrocytic HSP90AA1 Upregulation and Altered Synaptic Signaling in Parkinson's Disease: Transcriptomic Screening and In Vivo Validation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 8 August 2026 (6 papers)

[277] doi:10.1016/j.celrep.2026.117803 [paper]

APOE3 and APOE4 human astrocytes differentially modulate Alzheimer's disease pathology and microglial responses in chimeric mice.

Journal: Cell reports

Status: code on request

[278] doi:10.3390/e28080893 [paper]

Structured Fluctuations and the Information Dynamics of Self-Maintenance in Growing Neural Cellular Automata.

Journal: Entropy (Basel, Switzerland)

Status: code on request

[279] doi:10.3390/vetsci13080790 [paper, data]

Screening of Stable Reference Genes in &lt;i&gt;Solea senegalensis&lt;/i&gt; Juveniles for Nervous Necrosis Virus (NNV) Vaccination Assays.

Journal: Veterinary sciences

Status: data only, 1 dataset cited

[280] Code ↔ Paper doi:10.1038/s41467-026-76506-3 [paper, repository]

Allele-specific chromatin architecture shapes imprinted domains and coordinates a distal enhancer and antisense transcription at the mouse Mest-Copg2 domain.

Journal: Nature communications

Authors' code: Whipple-Lab/capture-hic-imprinting (no license), Zenodo 21224497 (CC-BY-4.0)

Status: code verified, 46 files readable, 8 matches

[281] Code ↔ Paper doi:10.1038/s41467-026-76587-0 [paper, repository]

Uncovering the signaling networks of disseminated glioblastoma cells in vivo with INSIGHT.

Journal: Nature communications

Authors' code: cycif.org (no license), ryuhjinahn (no license), hub.docker.com/r/bumproo (no license)

Status: code verified

[282] Code ↔ Paper doi:10.1038/s41467-026-75862-4 [paper, repository]

Targeting m&lt;sup&gt;6&lt;/sup&gt;A writer METTL3 with engineered nanovesicles reduces neuroinflammation in vitro and in vivo.

Journal: Nature communications

Authors' code: Zenodo 20627531 (CC-BY-4.0), xulf1996-arch/mettl3_m6a_bulk_pipeline (no license)

Status: code verified, 24 files readable, 5 matches

Friday, 7 August 2026 (4 papers)

[283] Code ↔ Paper doi:10.21203/rs.3.rs-10380518/v1 [paper, repository]

Shared Genetic Architecture of Premenstrual Disorder and Postpartum Depression: Registry-Based and Genetic Evidence

Journal: Research Square (preprint)

Authors' code: alexploner/cfdr.pleio (GPL-3.0)

Status: code verified, 9 files readable, 1 match

[284] doi:10.1016/j.jbc.2026.113399 [paper, data]

Domain-dependent uncoupling of the co-chaperone and E3 ubiquitin ligase CHIP underlies heterogeneity in spinocerebellar ataxia 48.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[285] Code ↔ Paper doi:10.1016/j.isci.2026.116955 [paper, repository]

Specialized cortical ER architecture modulates Ca&lt;sup&gt;2+&lt;/sup&gt; signaling dynamics.

Journal: iScience

Authors' code: Zenodo 20699141 (CC-BY-4.0), Zenodo 20699140 (CC-BY-4.0), jsneyd/courjaret-et-al--2025 (no license)

Status: code verified, 27 files readable

[286] Code ↔ Paper doi: [paper, repository]

SOX12 and DELTA mediate ecdysone-driven adult neural cell proliferation during metamorphosis

Journal: The Journal of biological chemistry

Authors' code: BGI-flexlab/SOAPnuke (GPL-3.0)

Status: code verified, 34 files readable, 1 match

Thursday, 6 August 2026 (9 papers)

[287] Code ↔ Paper doi:10.7554/elife.103224 [paper, repository]

Brainstem neurons coordinate the bladder and urethral sphincter for urination.

Journal: eLife

Authors' code: xieyangshuying/Brainstem-neurons-coordinate-the-bladder-and-urethral-sphincter-for-urination (Apache-2.0)

Status: code verified, 8 files readable

[288] doi:10.1111/cpr.70269 [paper, data]

Chromatin Remodeller BRD9 Orchestrates Odontoblastic Differentiation via Coordinating RUNX2-KLF4.

Journal: Cell proliferation

Status: data only, 1 dataset cited

[289] doi:10.1038/s41467-026-76173-4 [paper, data]

α-Synuclein blocks endoplasmic reticulum co-translational protein translocation early in Parkinson's disease.

Journal: Nature communications

Status: data only, 1 dataset cited

[290] Code ↔ Paper doi:10.1038/s12276-026-01801-4 [paper, repository]

Putative glioblastoma origin-like cells in the subventricular zone: isolation and characterization.

Journal: Experimental & molecular medicine

Authors' code: hoonbiolab/yugbmoc_paper (no license)

Status: code verified, 7 files readable, 6 matches

[291] Code ↔ Paper doi:10.1016/j.xpro.2026.104773 [paper, repository]

Protocol for fluorescent false neurotransmitter live imaging of dopamine release dynamics from individual synapses in acute brain slices.

Journal: STAR protocols

Authors' code: MDevineLab/FFN200-live-imaging (CC-BY-4.0)

Status: code verified, 4 files readable

[292] doi:10.1016/j.isci.2026.117028 [paper]

Intermittent fasting promotes remodeling of neural and vascular networks in visceral white adipose tissue.

Journal: iScience

Status: code on request

[293] Code ↔ Paper doi:10.3389/fbinf.2026.1832826 [paper, repository]

Spatial transcriptomics reveal heterogeneous cell‒cell interactions among brain regions in cuprizone model consistent with multiple sclerosis lesions.

Journal: Frontiers in bioinformatics

Authors' code: sunduanchen/Scissor (GPL-3.0)

Status: code verified, 20 files readable, 4 matches

[294] doi:10.3390/ncrna12040031 [paper, data]

Long-Read RNA Sequencing Reveals an Isoform Switching Pattern in Healthy Microglial Cell Lines Exposed to Radiotherapy.

Journal: Non-coding RNA

Status: data only, 1 dataset cited

[295] doi:10.1038/s41467-026-76286-w [paper, data]

Regional diversity of cranial skeletal stem cells governs bone morphogenetic protein-2 mediated bone regeneration.

Journal: Nature communications

Status: data only, 2 datasets cited

Wednesday, 5 August 2026 (7 papers)

[296] doi:10.1523/jneurosci.2002-24.2026 [paper, data]

Astrocyte TrkB.T1 Deficiency Disrupts Glutamatergic Synaptogenesis and Astrocyte-Synapse Interactions.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[297] doi:10.1371/journal.pgen.1011909 [paper, data]

Glial cell toxicity in a Drosophila C9orf72 neurodegeneration model.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[298] Code ↔ Paper doi:10.1038/s41586-026-10874-0 [paper, repository]

Amygdala astrocyte primary cilium mechanisms contribute to stress behaviours.

Journal: Nature

Authors' code: hms-dbmi/UpSetR (other)

Status: code verified, 31 files readable

[299] doi:10.1038/s41593-026-02379-w [paper, data]

Norepinephrine and dopamine sensor crosstalk depends on local innervation density.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[300] Code ↔ Paper doi:10.1016/j.celrep.2026.117793 [paper, repository]

Clustered inputs engage dendritic nonlinearities and calcium signaling to support efficient place-field formation in CA1 pyramidal neurons.

Journal: Cell reports

Authors' code: Zenodo 20738191 (GPL-3.0), zenodo.com (no license), poirazi-lab/tasciotti_et_al_2026 (GPL-3.0)

Status: code verified, 128 files readable, 22 matches

[301] doi:10.3389/fncel.2026.1901103 [paper]

Loss of epigenetic adaptation to a high-fat diet in alpha-synuclein transgenic mice.

Journal: Frontiers in cellular neuroscience

Status: data only

[302] doi:10.3389/fphar.2026.1895800 [paper, data]

NDP-MSH rescues LPS-induced neuroinflammation, synaptic deficits, and depressive-like behaviors in mice: involvement of MC1R-cAMP/PKA signaling.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

Tuesday, 4 August 2026 (7 papers)

[303] doi:10.1007/s11033-026-12462-x [paper, data]

METTL3-dependent m⁶A maturation of miR-140-3p contributes to hippocampal neuronal apoptosis through the OTX2/Wnt/β-catenin axis under chronic stress.

Journal: Molecular biology reports

Status: data only, 1 dataset cited

[304] doi:10.1016/j.xpro.2026.104720 [paper, data]

Protocol using AGO-APP for isolation and sequencing of argonaute-bound miRNAs in specific neuronal subtypes of the mouse brain.

Journal: STAR protocols

Status: data only, 1 dataset cited

[305] Code ↔ Paper doi:10.1038/s41593-026-02367-0 [paper, repository]

A reproducible three-dimensional model of human brain tissue to investigate physiological and disease-associated microglia phenotypes.

Journal: Nature neuroscience

Authors' code: jsschrepping/r_docker (MIT), gitlab.dzne.de/ag-beyer/singlecell_analysis_3btm (no license)

Status: code verified, 20 files readable, 18 matches

[306] doi:10.1186/s40478-026-02388-7 [paper, data]

Galectin-3 is elevated in Müller glia in human glaucomatous eyes and ocular hypertensive rat eyes and associated with phagocytosing states.

Journal: Acta neuropathologica communications

Status: data only, 3 datasets cited

[307] doi:10.1111/bpa.70129 [paper]

Brain metastasis-associated fibroblasts shape the tumour microenvironment to enhance cancer cell invasion.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only

[308] doi:10.1186/s40478-026-02399-4 [paper, data]

Overactive EAAT1 Cl&lt;sup&gt;-&lt;/sup&gt; channels impair GABAergic tonic inhibition in SLC1A3-associated episodic ataxia.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[309] doi:10.1016/j.isci.2026.116918 [paper]

Batrachotoxin-sensitive sodium channels in toxic birds challenge "target mutation" strategy of toxin autoresistance.

Journal: iScience

Status: code on request

Monday, 3 August 2026 (11 papers)

[310] doi:10.1101/gad.353596.125 [paper, data]

Functional divergence of Capicua isoforms explains differential tissue vulnerability in neurological disease.

Journal: Genes & development

Status: data only, 1 dataset cited

[311] doi:10.1002/advs.76989 [paper]

Targeting Hippocampal PTEN Suppresses Ferroptosis and Rescues Cognitive Decline in Alzheimer's Disease via Dual AKT/GSK3β/Nrf2 and AKT/STAT3 Axes.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[312] doi:10.1038/s44321-026-00482-w [paper, data]

Reducing CETP activity prevents memory decline in an Alzheimer's disease mouse model.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[313] doi:10.1007/s00415-026-14034-2 [paper, data]

Similarities and differences in the late-onset GM2 gangliosidoses: Tay-Sachs and Sandhoff diseases.

Journal: Journal of neurology

Status: data only, 8 datasets cited

[314] Code ↔ Paper doi:10.1038/s41593-026-02387-w [paper, repository]

Developing mouse inhibitory neuron single-cell transcriptomes reveal distinct modes of cell-type diversification.

Journal: Nature neuroscience

Authors' code: Limlab-VIBCBD/Dev-SST-atlas (no license)

Status: code verified, 17 files readable, 23 matches

[315] Code ↔ Paper doi:10.1038/s44161-026-00844-0 [paper, repository]

Pericyte K&lt;sub&gt;ATP&lt;/sub&gt; channel hyperactivity redistributes cortical blood flow in a CADASIL mouse model.

Journal: Nature cardiovascular research

Authors' code: ntsoukias/SVD-Blood-Flow-Simulation (other), Zenodo 20722612 (CC-BY-4.0)

Status: code verified, 12 files readable, 5 matches

[316] Code ↔ Paper doi:10.1177/11779322261475822 [paper, repository]

Unveiling Carbonic Anhydrase VIII, X, XI Expression in Cancer and Neurological Diseases Through Integrated Bioinformatics Approaches.

Journal: Bioinformatics and biology insights

Authors' code: Zenodo 12796528 (CC-BY-4.0)

Status: code verified

[317] doi:10.3390/ijms27156964 [paper, data]

Senescence Markers and Associated Transcriptomic Changes Are Expressed at Early Stages of Alzheimer's Neuropathology but Are Not Independently Related to Dementia.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[318] doi:10.1016/j.isci.2026.117017 [paper, data]

Across species identification of genes bridging neurological and reproductive functions in mammals.

Journal: iScience

Status: data only, 2 datasets cited

[319] doi:10.1016/j.isci.2026.116930 [paper, data]

HCAR1-mediated lactate signaling modulates motor behavior and regulates spontaneous firing in Purkinje cells.

Journal: iScience

Status: code on request, 1 dataset cited

[320] Code ↔ Paper doi:10.1016/j.psj.2026.107561 [paper, repository]

Integrated Analysis of SNPs and Structural Variations via High-depth Whole-genome Sequencing Reveals the Genetic Architecture and Optimizes Genomic Prediction in Chickens.

Journal: Poultry science

Authors' code: jasmine/jasmine (MIT), HaoqiangYe/GPDLBP (MIT)

Status: code verified, 292 files readable, 3 matches

Saturday, 1 August 2026 (32 papers)

[321] Code ↔ Paper doi:10.1093/brain/awaf440 [paper, repository]

Cerebrospinal fluid-driven ependymal motile cilia defects are implicated in multiple sclerosis.

Journal: Brain : a journal of neurology

Authors' code: stratton-lab/Bigotte-2025-Cilia (GPL-3.0)

Status: code verified, 3 files readable, 3 matches

[322] Code ↔ Paper doi:10.1002/glia.70181 [paper, repository]

Female Mice Show Stronger Time-of-Day Modulation of Astrocytic Ca&lt;sup&gt;2+&lt;/sup&gt; Activity in the Sleep-Regulatory Ventrolateral Preoptic Nucleus.

Journal: Glia

Authors' code: louzonca/AstroNet (CC0-1.0)

Status: code verified, 16 files readable, 2 matches

[323] doi:10.1021/acs.jmedchem.6c01461 [paper, data]

Dual Inhibitors of p38α Mitogen-Activated Protein Kinase and Butyrylcholinesterase for the Modulation of Neuroinflammation and Cognitive Dysfunction.

Journal: Journal of medicinal chemistry

Status: data only, 7 datasets cited

[324] doi:10.1093/stcltm/szag071 [paper, data]

Temporal mapping of radiation-induced neural injury and mitigation in human cortical organoids.

Journal: Stem cells translational medicine

Status: data only, 1 dataset cited

[325] Code ↔ Paper doi:10.1038/s41467-026-75882-0 [paper, repository]

A massively parallel CRISPR-based screening platform for modifiers of neuronal depolarization.

Journal: Nature communications

Authors' code: noamteyssier/sgcount (MIT), noamteyssier/crispr_screen (MIT), noamteyssier/adpbulk (MIT), noamteyssier/cshift (MIT), noamteyssier/idea (MIT), Zenodo 12774353 (CC-BY-4.0), Zenodo 12774305 (CC-BY-4.0), Zenodo 20736458 (MIT), Zenodo 20736463 (MIT), Zenodo 20736467 (MIT)

Status: code verified, 140 files readable, 1 match

[326] Code ↔ Paper doi:10.1093/nar/gkag788 [paper, repository]

Neuronal activity-driven 3D chromatin dynamics in cortical pyramidal neurons depend on SATB2.

Journal: Nucleic acids research

Authors' code: sespesogil/satb2_3d_genome (no license), ay-lab/dchic (MIT), Ali-Mujahid/Satb2-3D-Genome-organization (no license), Zenodo 21534635 (CC-BY-4.0)

Status: code verified, 29 files readable, 8 matches

[327] doi:10.1002/alz.71680 [paper, data]

A combined artificial intelligence-wet lab approach identifies a pivotal role of the NAD&lt;sup&gt;+&lt;/sup&gt;-mitophagy axis on aging and neurodegeneration.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[328] doi:10.1002/ctm2.70756 [paper, data]

Chronic stress-induced brain-derived small extracellular vesicles promote colorectal cancer through Treg differentiation.

Journal: Clinical and translational medicine

Status: data only, 1 dataset cited

[329] doi:10.1002/brb3.71700 [paper, data]

Downregulation of Lgals3 Alleviates Inflammatory Response and Apoptosis in a Mouse Model of Cerebral Ischemia/Reperfusion Injury.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[330] doi:10.1002/cne.70197 [paper, data]

Anatomical Investigation Reveals a Second Olfactory System in Locusts.

Journal: The Journal of comparative neurology

Status: data only, 1 dataset cited

[331] doi:10.1111/nan.70097 [paper, data]

Transgenic A53T Mice Have Astrocytic α-Synuclein Aggregates in Dopamine and Striatal Regions.

Journal: Neuropathology and applied neurobiology

Status: data only, 2 datasets cited

[332] doi:10.1167/iovs.67.10.41 [paper, data]

Ascl1 Represses Müller Glial and Promotes Rod Photoreceptor Fate Through Repressing Notch Signaling in Late Retinal Progenitor Cells.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[333] Code ↔ Paper doi:10.1002/alz.71745 [paper, repository]

Regional astrocyte dysregulation and altered glymphatic-related markers in Alzheimer's disease frontal cortex.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: xanthippilouka/Human_Brain_Image_Analysis (no license)

Status: code verified, 8 files readable, 2 matches

[334] doi:10.1021/acs.jmedchem.6c01882 [paper, data]

Selective Brain-Penetrant TTBK1 Inhibitors Modulate TDP-43 Pathology and Rescue Cognitive Deficits in a Mouse Model of TDP-43 Proteinopathy.

Journal: Journal of medicinal chemistry

Status: data only, 4 datasets cited

[335] doi:10.1111/acel.70653 [paper, data]

Distinct Transposable Element Transcript Patterns in Microglia Across Aging and Alzheimer's Disease.

Journal: Aging cell

Status: data only, 1 dataset cited

[336] doi:10.1002/cns.71075 [paper, data]

Neuroprotective Role of E3 Ubiquitin Ligase TRIM2 in Parkinson's Disease: Attenuation of Oxidative Stress and Apoptosis via Promoting ELAVL1 Ubiquitination.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[337] Code ↔ Paper doi:10.1016/j.isci.2026.117010 [paper, repository]

Deep learning-assisted mapping of dendritic spines using sequential 2D two-photon calcium imaging.

Journal: iScience

Authors' code: dcupolillo/ROIpy (MIT), Zenodo 21334250 (MIT), dcupolillo/spyne (no license), Zenodo 21334656 (CC-BY-4.0), dcupolillo/calcium_event_classifier (no license), Zenodo 21334890 (CC-BY-4.0)

Status: code verified, 182 files readable, 21 matches

[338] doi:10.1002/cns.71080 [paper, data]

Vorinostat Mitigates Early Brain Injury Following Subarachnoid Hemorrhage Through Modulation of the C3aR1/TGF-β/Smad Pathway.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[339] doi:10.1002/cns.71074 [paper, data]

Bard1-Mediated Regulation of Hnrnpa2b1 Ubiquitination and Protein Stability Contributes to Neuronal Ferroptosis and Cognitive Dysfunction Following Ischemic Stroke.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[340] doi:10.1002/jev2.70347 [paper]

Lymphatic Drainage of Cerebrospinal Fluid Using Lymph Node Seeker 64Cu-Labeled Gram-Negative Bacterial Extracellular Vesicles With Positron Emission Tomography (PET).

Journal: Journal of extracellular vesicles

Status: code on request

[341] doi:10.1097/md.0000000000050109 [paper, data]

The gut-immune-brain axis in CNS tumors: Causal roles of microbiota and inflammatory proteins unveiled by Mendelian randomization and single-cell transcriptomics.

Journal: Medicine

Status: data only, 1 dataset cited

[342] doi:10.1111/acel.70646 [paper, data]

HNRNPC Succinylation Influences the Neurodegeneration of Alzheimer's Disease Through YME1L1-Mediated Mitochondrial Metabolism.

Journal: Aging cell

Status: data only, 1 dataset cited

[343] doi:10.1002/jcsm.70357 [paper, data]

Early and Divergent Lipid Mediator Remodelling in Fast Versus Slow Skeletal Muscles of Female hSOD1&lt;sup&gt;G93A&lt;/sup&gt; Mice.

Journal: Journal of cachexia, sarcopenia and muscle

Status: data only, 1 dataset cited

[344] doi:10.1111/cbdd.70363 [paper]

Multi-Omics Integration Reveals That SN-011 Targets JUNB to Upregulate ADGRE5 and Restore Vascular Endothelial Cell Communication in Ischemic Stroke.

Journal: Chemical biology & drug design

Status: data only

[345] doi:10.1002/ccs3.70041 [paper, data]

The suppressor of cytokine signaling 3 regulates glioma stem cell maintenance and immune microenvironment through signal transducer and activator of transcription 3 signaling.

Journal: Journal of cell communication and signaling

Status: data only, 1 dataset cited

[346] Code ↔ Paper doi:10.1210/endocr/bqag084 [paper, repository]

The EDC mixture "NeuroMix" alters neuroendocrine physiology, fatty food preference, and the central reward transcriptome.

Journal: Endocrinology

Authors' code: emilyhilz/NeuroMix-2026 (no license)

Status: code verified, 3 files readable, 2 matches

[347] Code ↔ Paper doi:10.1093/gbe/evag197 [paper, repository]

Molecular Drivers of Mutualistic Association Between Anemone and Anemonefish.

Journal: Genome biology and evolution

Authors' code: sneha100895/Anemone-anemonefish-mutualism-RNA-Seq (GPL-2.0)

Status: code verified, 5 files readable, 4 matches

[348] doi:10.1093/toxsci/kfag094 [paper, data]

Building structure activity relationships to avoid toxicity due to unwanted central nervous system ion channel activity.

Journal: Toxicological sciences : an official journal of the Society of Toxicology

Status: data only, 2 datasets cited

[349] doi:10.1111/acel.70645 [paper, data]

Unveiling the AcSirt2-FOXO-Mitophagy Axis: Insights Into Mitochondrial Quality Control and Delayed Aging in Apis cerana.

Journal: Aging cell

Status: data only, 1 dataset cited

[350] doi:10.1158/2767-9764.crc-25-0811 [paper, data]

Targeting Wild-type NTRK in NTRK Fusion-Negative Lung Cancer Decreases Brain Metastases.

Journal: Cancer research communications

Status: data only, 1 dataset cited

[351] doi:10.1021/acschemneuro.6c00342 [paper, data]

5-HT4 Receptor Ligand RS67333 Modulates Striatal Acetylcholine and Dopamine Release via the Inhibition of Acetylcholinesterase.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[352] Code ↔ Paper doi:10.1002/pro.70695 [paper, repository]

MIF-MAPMS: Enhancing identification of myelin autoantigenic peptides in multiple sclerosis through multimodal information fusion.

Journal: Protein science : a publication of the Protein Society

Authors' code: lawankorn-m/MIF-MAPMS (no license)

Status: code verified, 6 files readable, 6 matches

Friday, 31 July 2026 (7 papers)

[353] Code ↔ Paper doi:10.1371/journal.pone.0354882 [paper, repository]

Integrative network pharmacology, transcriptomics, and molecular docking identify candidate Centella asiatica constituents and targets in neurodegenerative diseases.

Journal: PloS one

Authors' code: Zenodo 20779507 (CC-BY-4.0)

Status: code verified, 1 file readable

[354] doi:10.1126/sciadv.aec9329 [paper, data]

Cohesin and NuRD antagonistically drive alternative neuronal fates via PLZF transcription factors.

Journal: Science advances

Status: data only, 1 dataset cited

[355] Code ↔ Paper doi:10.1126/sciadv.adz6517 [paper, repository]

Corticosterone-linked microglial activity underpins sexually dimorphic neuroplasticity after ketamine anesthesia.

Journal: Science advances

Authors' code: siegert-lab/V1_morphOMICs (MIT), Zenodo 19057068 (CC-BY-4.0), Zenodo 19019013 (GPL-3.0), Zenodo 19071467 (CC-BY-4.0), rcubero/morphomics (GPL-3.0), thomasngl/morphomics_venturino_2025 (no license), jakeyeung/gliamultiomics (no license)

Status: code verified, 140 files readable, 4 matches

[356] doi:10.1186/s12967-026-08706-w [paper, data]

Impaired NADH-linked mitochondrial respiration disrupts ventral midbrain neuronal programs in POLG disease.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[357] doi:10.1016/j.nbas.2026.100164 [paper, data]

Single-cell transcriptomic analysis reveals age-related remodeling of brain endothelial cells.

Journal: Aging brain

Status: data only, 1 dataset cited

[358] doi:10.1016/j.isci.2026.116975 [paper, data]

Loss of YY1 in Purkinje cells triggers cerebellar ataxia via Wnt10b-mediated impairment of dendrite development.

Journal: iScience

Status: data only, 1 dataset cited

[359] doi:10.3390/metabo16080541 [paper, data]

Spatial Metabolomics and Single-Cell Virtual Knockout Screening Reveal Solanesol Improves Parkinson's Disease-like Pathology Based on Lipid Inflammation Mechanism.

Journal: Metabolites

Status: data only, 1 dataset cited

Thursday, 30 July 2026 (12 papers)

[360] doi:10.1523/eneuro.0430-25.2026 [paper, data]

Altered &lt;i&gt;glr-1&lt;/i&gt; Expression after EtOH Withdrawal Is Linked to Associative Behavior Deficits in &lt;i&gt;C. elegans&lt;/i&gt;.

Journal: eNeuro

Status: data only, 1 dataset cited

[361] Code ↔ Paper doi:10.1038/s41467-026-75700-7 [paper, repository]

Gene regulatory innovations from transposable elements in primate cerebellum development.

Journal: Nature communications

Authors' code: kaessmannlab/cerebellum_te (CC-BY-NC-SA-4.0), Zenodo 19354896 (CC-BY-4.0)

Status: code verified, 56 files readable, 18 matches

[362] Code ↔ Paper doi:10.7554/elife.103046 [paper, repository]

Dichotomy between extracellular signatures of active dendritic chemical synapses and gap junctions.

Journal: eLife

Authors' code: Zenodo 21312084 (CC-BY-4.0), supp:PMC13423354/elife-103046-code1.zip (no license)

Status: code verified, 154 files readable, 4 matches

[363] doi:10.1002/advs.202518421 [paper]

Modulation of miR-23b Wnt/β-catenin Axis Strengthens Endothelial Barrier Properties.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[364] Code ↔ Paper doi:10.1016/j.xcrm.2026.102949 [paper, repository]

Targeting G&lt;sub&gt;i/o&lt;/sub&gt;-coupled GPCRs to inhibit nociceptors: Insights from the serotonin receptor Htr1b and triptans.

Journal: Cell reports. Medicine

Authors' code: Zenodo 20801945 (CC-BY-4.0)

Status: code verified, 4 files readable

[365] Code ↔ Paper doi:10.1038/s41594-026-01857-w [paper, repository]

Protein thiol alterations drive pathologic liquid-liquid phase separation in the aging brain.

Journal: Nature structural & molecular biology

Authors' code: figshare 32817593 (CC-BY-4.0)

Status: empty repository

[366] doi:10.3390/cells15151379 [paper, data]

Extracellular Aβ42 Oligomers Induce ROCK2 Hyperactivation Through Dual Mediation by RhoA and GzmB: Significance of Moderate ROCK2 Activity in Neural Cells.

Journal: Cells

Status: data only, 1 dataset cited

[367] Code ↔ Paper doi:10.3390/ijms27156842 [paper, repository]

A Hierarchical Multimodal Knowledge Graph for Neural Cell-Type-Specific Regulation Integrating Single-Cell Transcriptomics and Literature Evidence.

Journal: International journal of molecular sciences

Authors' code: SiatBioInf/NeuroCellKG (MIT)

Status: code verified, 12 files readable, 16 matches

[368] doi:10.3390/brainsci16080811 [paper]

Single-Cell Analysis of Brain Arteriovenous Malformations Reveals Pro-Angiogenic Myeloid Programs.

Journal: Brain sciences

Status: code on request

[369] Code ↔ Paper doi:10.1038/s41467-026-76156-5 [paper, repository]

Longitudinal analysis reveals myeloid cell contributions to murine neuroPASC pathogenesis.

Journal: Nature communications

Authors' code: lutan3/neuroPASC-scRNA-seq-data-analysis (Apache-2.0)

Status: empty repository, 2 files readable

[370] Code ↔ Paper doi:10.1038/s41398-026-04292-z [paper, repository]

Regional juxtacortical microstructural changes and gene expression provide insights into neurodegeneration in Alzheimer's disease.

Journal: Translational psychiatry

Authors' code: Sahuhu-Sun/Imaging-transcriptomics (no license)

Status: code verified, 5 files readable, 2 matches

[371] Code ↔ Paper doi:10.1186/s12864-026-13024-y [paper, repository]

Long-read RNA-seq maps the isoform landscape of the trigeminal ganglion in an allergic rhinitis mouse model.

Journal: BMC genomics

Authors' code: yerry77/TG-full-length (no license)

Status: code verified, 7 files readable, 5 matches

Wednesday, 29 July 2026 (14 papers)

[372] doi:10.1523/jneurosci.2320-25.2026 [paper, data]

The Synaptic Vesicle Priming Protein Munc13 Mediates Evoked Somatodendritic Dopamine Release.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[373] doi:10.7554/elife.108845 [paper, data]

Acute opioid responses are modulated by dynamic interactions of &lt;i&gt;Oprm1&lt;/i&gt; and &lt;i&gt;Fgf12&lt;/i&gt;.

Journal: eLife

Status: data only, 1 dataset cited

[374] Code ↔ Paper doi:10.1126/sciadv.aef6777 [paper, repository]

Astrocyte redox imbalance underlies prelimbic neuronal hypoactivity and maladaptive affective behaviors in epilepsy.

Journal: Science advances

Authors' code: KunYang99/ALDH7A1 (no license), Zenodo 20719402 (CC-BY-4.0)

Status: code verified, 10 files readable, 1 match

[375] Code ↔ Paper doi:10.1126/sciadv.aed8818 [paper, repository]

Reconstitution of actomyosin networks in cell-sized liposomes dissects distinct mechanisms of membrane blebbing and symmetry breaking.

Journal: Science advances

Authors' code: ktyman2/CellBleb (no license), Zenodo 19435449 (CC-BY-4.0)

Status: code verified, 40 files readable, 2 matches

[376] doi:10.1016/j.neurot.2026.e00977 [paper, data]

Exosome-mediated delivery of 3-n-butylphthalide rescues microglial energy crisis and ameliorates neuroinflammation in ischemic stroke.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[377] doi:10.26508/lsa.202603677 [paper, data]

The transcriptional cortical response to daily torpor in &lt;i&gt;Phodopus sungorus&lt;/i&gt;.

Journal: Life science alliance

Status: data only, 1 dataset cited

[378] Code ↔ Paper doi:10.1038/s41467-026-76146-7 [paper, repository]

Resolving endogenous protein organization in cells with nanometer resolution.

Journal: Nature communications

Authors' code: Zenodo 21290042 (CC-BY-4.0)

Status: code verified

[379] Code ↔ Paper doi:10.1038/s41593-026-02384-z [paper, repository]

cGAS-mediated type I IFN signaling contributes to disease progression in drug-refractory epilepsy.

Journal: Nature neuroscience

Authors' code: aertslab/SCENIC (GPL-3.0), Jackson-Kyle-CCOM/Automated-EEG-Algorithm (AGPL-3.0), Zenodo 20545168 (CC-BY-4.0), lifan36/Huang-Dravet-2026 (no license), Zenodo 20545167 (CC-BY-4.0)

Status: code verified, 118 files readable, 15 matches

[380] doi:10.1186/s40035-026-00567-z [paper, data]

Transaldolase 1 contributes to pentose phosphate pathway disruption and synaptic dysfunction in Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 3 datasets cited

[381] doi:10.3390/ani16152325 [paper, data]

From Cellular Lysis to Microbial Explosion: Elucidating the Temporal Degradation and Spoilage Mechanisms of Frozen Mysid Shrimp as Seahorse (&lt;i&gt;Hippocampus&lt;/i&gt; spp.) Feed.

Journal: Animals : an open access journal from MDPI

Status: data only, 1 dataset cited

[382] Code ↔ Paper doi:10.3389/fnbeh.2026.1878769 [paper, repository]

&lt;i&gt;ADAMTS18&lt;/i&gt; as a candidate gene linking social stress and depression: a cross-species study in African wild dogs (&lt;i&gt;Lycaon pictus&lt;/i&gt;) and humans.

Journal: Frontiers in behavioral neuroscience

Authors' code: ncbi/sra-tools (other)

Status: code verified, 1,652 files readable, 2 matches

[383] Code ↔ Paper doi:10.1038/s41467-026-76054-w [paper, repository]

Distinct differentiation trajectories leave lasting impacts on gene regulation and function of V2a neurons.

Journal: Nature communications

Authors' code: Alireza-Majd/celloracle_pipeline (no license)

Status: code verified, 10 files readable, 8 matches

[384] doi:10.1038/s41467-026-75997-4 [paper, data]

Active conformations of neuronal Na&lt;sup&gt;+&lt;/sup&gt;, K&lt;sup&gt;+&lt;/sup&gt;-ATPase isoforms and a disease-causing mutant.

Journal: Nature communications

Status: data only, 2 datasets cited

[385] Code ↔ Paper doi:10.1093/braincomms/fcag264 [paper, repository]

Elevated intron retention implicates neuroinflammation in brains of individuals with alcohol use disorder.

Journal: Brain communications

Authors' code: cpdong/IntronNeoantigen (no license)

Status: code verified, 5 files readable, 1 match

Tuesday, 28 July 2026 (4 papers)

[386] Code ↔ Paper doi:10.7554/elife.107531 [paper, repository]

CellCover defines marker gene panels capturing developmental progression in neocortical neural stem cell identity.

Journal: eLife

Authors' code: lanlanji/CoveringPackage (no license)

Status: code verified, 5 files readable

[387] Code ↔ Paper doi:10.1371/journal.pcbi.1014549 [paper, repository]

Inward rectifier potassium channels interact with calcium channels to promote robust and physiological bistability.

Journal: PLoS computational biology

Authors' code: anadew2/cal-kir-bistability (MIT)

Status: code verified, 221 files readable

[388] doi:10.3389/fncel.2026.1886995 [paper]

CD22 regulates Aβ clearance in microglia through INPP5D signaling.

Journal: Frontiers in cellular neuroscience

Status: data only

[389] Code ↔ Paper doi:10.1038/s41467-026-75194-3 [paper, repository]

Leucine-rich repeat kinase 2 impairs the release sites of Parkinson's disease vulnerable dopamine axons.

Journal: Nature communications

Authors' code: curtain.proteo.info (no license), Zenodo 19930567 (CC-BY-4.0), Zenodo 20244434 (CC-BY-4.0), DombeckLab/lrrk2_photometry_analysis (MIT)

Status: code verified, 19 files readable, 7 matches

Monday, 27 July 2026 (10 papers)

[390] doi:10.1002/advs.76695 [paper, data]

NSD2 Coordinates the Neurogenic-to-Gliogenic Transition via H3K36me2-Dependent Activation of the EGFR-ERK Pathway.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[391] doi:10.1371/journal.pone.0316959 [paper, data]

In vivo changes in zebrafish anesthetic sensitivity in response to the loss of kif5Aa are associated with the alteration of mitochondrial motility.

Journal: PloS one

Status: data only, 1 dataset cited

[392] Code ↔ Paper doi:10.7554/elife.107635 [paper, repository]

Stable excitatory-inhibitory synapse balance despite dynamic turnover.

Journal: eLife

Authors' code: datajamesallen/Garbett_2026_eLife (MIT)

Status: code verified, 69 files readable, 11 matches

[393] Code ↔ Paper doi:10.1038/s41467-026-75749-4 [paper, repository]

SLC26A11 is an atypical solute carrier with dual transport-channel function mediating lysosomal sulfate transport.

Journal: Nature communications

Authors' code: jugit.fz-juelich.de/computational-neurophysiology/slc26a11-ion-binding (no license)

Status: code verified

[394] Code ↔ Paper doi:10.1038/s42003-026-10646-6 [paper, repository]

Energy paradox in REM sleep: balancing supply and consumption in brain metabolism.

Journal: Communications biology

Authors' code: ContextLab/seqnmf (MIT)

Status: code verified, 7 files readable

[395] doi:10.1093/pnasnexus/pgag254 [paper, data]

Intermittent fasting rewires tissue-specific gene-transposable element regulatory networks.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[396] doi:10.1016/j.isci.2026.116945 [paper]

Neurodegeneration in the olfactory system in Niemann Pick type C1 disease.

Journal: iScience

Status: code on request

[397] doi:10.1016/j.isci.2026.116099 [paper, data]

Complete muscle denervation triggers compensatory sprouting of a bystander tonic motor neuron in &lt;i&gt;Drosophila&lt;/i&gt; larvae.

Journal: iScience

Status: code on request, 1 dataset cited

[398] doi:10.1038/s41467-026-75941-6 [paper, data]

Structural and functional studies of inward rectifier Kir7.1 and its regulation by the Melanocortin-4 receptor.

Journal: Nature communications

Status: data only, 2 datasets cited

[399] doi:10.1186/s40478-026-02391-y [paper, data]

Neuro-glial lipid imbalance in a Drosophila model of amyotrophic lateral sclerosis 8.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

Sunday, 26 July 2026 (2 papers)

[400] doi:10.3390/ijms27156671 [paper, data]

Inflamed Yet Immune-Evasive? A Transcriptomic Meta-Analysis Identifies Conserved Inflammatory, Developmental, and Neuronal Signatures Associated with Polyploid Giant Cancer Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[401] Code ↔ Paper doi:10.3390/biomedicines14081677 [paper, repository]

Exploratory Genome and Transcriptome-Wide Association Analyses of Addiction-Related Phenotypes in a Twin Cohort.

Journal: Biomedicines

Authors' code: jared8844/code-for-addiction-paper (no license)

Status: code verified, 3 files readable, 5 matches

Saturday, 25 July 2026 (5 papers)

[402] doi:10.1016/j.ibneur.2026.07.011 [paper, data]

Brain criticality and advanced meditation "cessation" events: An intensively sampled electroencephalography case study.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[403] Code ↔ Paper doi:10.1016/j.namjnl.2026.100121 [paper, repository]

Predicting blood-brain barrier permeability of chemicals by machine learning modeling.

Journal: NAM journal

Authors' code: sourceforge.net/openbabel (no license)

Status: code verified

[404] Code ↔ Paper doi:10.1038/s41467-026-75352-7 [paper, repository]

Mechanosensory encoding of surface mechanics optimizes locomotion.

Journal: Nature communications

Authors' code: gitlab.icfo.net/nmsb/track-live-close-loop (no license), gitlab.icfo.net/nmsb/cal-free-m-worm (no license), gitlab.icfo.net/nmsb/traction-force-worm (no license), gitlab.icfo.net/nmsb/net-sim-worm (no license)

Status: code verified, 43 files readable, 9 matches

[405] doi:10.3390/antiox15080926 [paper, data]

NRF2 Deletion Results in Mobility Impairment in A53TSyn Model of Synucleinopathy.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

[406] doi:10.1038/s41420-026-03250-4 [paper, data]

Transcriptomic analysis reveals that neural stem cell-derived exosomes regulate the HMGB1/TLR2 signaling axis to promote astrocytic differentiation and mitochondrial biogenesis in the repair of radiation-induced blood-brain barrier damage.

Journal: Cell death discovery

Status: data only, 1 dataset cited

Friday, 24 July 2026 (12 papers)

[407] doi:10.1242/dmm.052810 [paper, data]

Fos regulates age-dependent neuroinflammation in a VAPP58S model of amyotrophic lateral sclerosis.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[408] Code ↔ Paper doi:10.1371/journal.pcbi.1014573 [paper, repository]

Cell-type-specific m1A dynamics are associated with microglial phenotypic transition and neuronal metabolic adaptation during spinal cord injury.

Journal: PLoS computational biology

Authors' code: Magetutor/m1A_score_manuscript (MIT)

Status: code verified, 28 files readable, 15 matches

[409] doi:10.1371/journal.pone.0352503 [paper, data]

G-protein coupled receptor, signal and signal-transduction related transcript mapping in nigral volume and pigmented neurons reveals a potential deficit of nigral feedback signals associated with Parkinson's disease.

Journal: PloS one

Status: data only, 1 dataset cited

[410] Code ↔ Paper doi:10.1242/dmm.052747 [paper, repository]

Cell death analysis of inducible, titratable neurodegenerative disease models in zebrafish and human stem cell-derived retinal organoids.

Journal: Disease models & mechanisms

Authors' code: mummlab/Cell-Death-in-NTR2.0-mediated-RGC-Ablation (no license)

Status: code verified, 6 files readable, 3 matches

[411] Code ↔ Paper doi:10.21203/rs.3.rs-10384174/v1 [paper, repository]

Maternal separation recalibrates prefrontal mitochondrial function and protects against stress-induced negative cognitive bias

Journal: Research Square (preprint)

Authors' code: Jeff-Dalley-Github (no license)

Status: code verified

[412] doi:10.1016/j.jbc.2026.113363 [paper, data]

The Src family kinase YES regulates DNAJB6b chaperone activity to modulate tau aggregation in Alzheimer's disease.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[413] Code ↔ Paper doi:10.1016/j.celrep.2026.117707 [paper, repository]

Bidirectional control of vesicular GABA release, LTP, and amotivation by GluN2D-selective allosteric modulators and ketamine.

Journal: Cell reports

Authors' code: microcircuitprojects/presynaptic_glun2d (no license)

Status: code verified, 3 files readable

[414] doi:10.3389/fonc.2026.1823895 [paper, data]

Phosphorylation of tumour suppressor Amotl2 by IKBKE kinase promotes YAP1 signalling, enhancing glioblastoma growth.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[415] Code ↔ Paper doi:10.3390/ijms27156614 [paper, repository]

Candidalysin Inhibits &lt;i&gt;Porphyromonas gingivalis&lt;/i&gt; Lipoprotein-Induced IL-1β Production in BV-2 Microglia via Hydrophobic Microbial Interactions.

Journal: International journal of molecular sciences

Authors' code: sokrypton/colabfold (MIT)

Status: code verified, 74 files readable, 2 matches

[416] doi:10.1016/j.omtn.2026.103037 [paper]

PIWIL2 drives stroke progression via modulation of NF-κB signaling.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[417] Code ↔ Paper doi:10.3390/diseases14080268 [paper, repository]

Common Inflammatory Pathways Between Periodontal Disease and Multiple Sclerosis: A Systematic Review.

Journal: Diseases (Basel, Switzerland)

Authors' code: OSF qmex2 (no license)

Status: code found, still to be checked

[418] doi:10.3390/antiox15080921 [paper, data]

Pyrroloquinoline Quinone Improves Cognitive-Related Behavioral Performance Associated with Enhanced Mitochondrial Bioenergetics in Naturally Aged Mice.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

Thursday, 23 July 2026 (14 papers)

[419] doi:10.1002/advs.76778 [paper, data]

A Blood-Derived Factor Rescues ALS: Platelet Factor 4 Activates OPTN-Dependent Autophagy to Clear SOD1 Aggregates Independently of PINK1.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 2 datasets cited

[420] doi:10.1083/jcb.202509110 [paper, data]

The missing link: Piccolino is essential for tethering synaptic vesicles to rod photoreceptor ribbons.

Journal: The Journal of cell biology

Status: data only, 1 dataset cited

[421] Code ↔ Paper doi:10.7554/elife.110013 [paper, repository]

Large-scale synthetic data enable digital twins of human excitable cells.

Journal: eLife

Authors' code: clancylabucd/digital-twin-for-the-win-personalized-cardiac-electrophysiology (CC-BY-NC-4.0)

Status: code verified, 17 files readable, 6 matches

[422] Code ↔ Paper doi:10.1172/jci.insight.207270 [paper, repository]

Progressive hypothalamic neuroinflammation in ovariectomized mice parallels aging-related transcriptomic changes in the female human hypothalamus.

Journal: JCI insight

Authors' code: jcbloom/hypo_menopauseNavarro (no license)

Status: code verified, 9 files readable, 6 matches

[423] doi:10.1016/j.xpro.2026.104716 [paper]

Protocol for studying Chemerin 15-enhanced microglial phagocytosis in cerebral ischemia-reperfusion injury via the ChemR23/p38 MAPK pathway.

Journal: STAR protocols

Status: code on request

[424] Code ↔ Paper doi:10.1126/sciadv.aee6579 [paper, repository]

Dopamine D2 receptors bypass canonical signaling to directly tune NMDA receptor function and aversive learning.

Journal: Science advances

Authors' code: Zenodo 19076090 (MIT), fordlab/d2-glun2b-paper (MIT)

Status: code verified, 20 files readable, 1 match

[425] Code ↔ Paper doi:10.1016/j.molcel.2026.07.006 [paper, repository]

DeorphaNN: Virtual screening of GPCR peptide agonists using AlphaFold-predicted active-state complexes and deep learning embeddings.

Journal: Molecular cell

Authors' code: Zebreu/DeorphaNN (MIT), Zenodo 20862123 (CC-BY-4.0), Zenodo 20865768 (MIT), Maryam-Haghani/NEFFy (GPL-3.0), facebookresearch/esm (MIT), ElofssonLab/FoldDock (Apache-2.0), huhlim/alphafold-multistate (no license), google-deepmind/alphafold (Apache-2.0)

Status: code verified, 569 files readable, 15 matches

[426] doi:10.1016/j.stemcr.2026.103020 [paper, data]

Brain corticogenesis promotes SARS-CoV-2 neuro-glial tropism through lipid-dependent viral replication.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[427] doi:10.1016/j.xcrm.2026.102937 [paper]

A biomimetic hybrid membrane vesicle nanoplatform attenuates tendinopathy through neuroinflammation modulation and tendon regeneration.

Journal: Cell reports. Medicine

Status: code on request

[428] Code ↔ Paper doi:10.1038/s41467-026-74968-z [paper, repository]

Activity-dependent ribosome profiling reveals the landscape of canonical and non-canonical translation in brain tissue.

Journal: Nature communications

Authors' code: nayanvs/Suryawanshi_et_al._2026 (no license), Zenodo 21273040 (CC-BY-4.0)

Status: code verified, 6 files readable

[429] doi:10.1038/s41467-026-74958-1 [paper, data]

Acute rapamycin treatment reveals distinct mechanisms of dysfunction in a maternal inflammation mouse model.

Journal: Nature communications

Status: data only, 2 datasets cited

[430] Code ↔ Paper doi:10.1038/s41593-026-02354-5 [paper, repository]

Focal astrocyte loss reveals nuclear translocation during lesion repopulation.

Journal: Nature neuroscience

Authors' code: alasne-uzh/migratory-astrocytes-ST (no license), doi:10.17632/xw8fv8gt8f.1 (no license)

Status: code verified, 9 files readable, 6 matches

[431] doi:10.1016/j.bbih.2026.101316 [paper]

Peripheral blood DNA methylation partially reports on immune cell type composition in the frontal brain.

Journal: Brain, behavior, & immunity - health

Status: data only

[432] Code ↔ Paper doi:10.1038/s41467-026-75723-0 [paper, repository]

Spatial transcriptomics reveals distinct cell type dynamics following opioid dependence in female mice with the common human μ-opioid receptor variant Oprm1 A118G.

Journal: Nature communications

Authors' code: GoogleXie/CellDynamicST (other)

Status: code verified, 36 files readable, 40 matches

Wednesday, 22 July 2026 (13 papers)

[433] Code ↔ Paper doi:10.1186/s12864-026-12965-8 [paper, repository]

Systematic evaluation of single-cell foundation model interpretability: attention-derived edge scores add no incremental value over gene-level features for perturbation-target prediction.

Journal: BMC genomics

Authors' code: Zenodo 18701417 (CC-BY-4.0), Biodyn-AI/biomechinterp-framework (no license)

Status: code verified, 383 files readable, 40 matches

[434] doi:10.1007/s12975-026-01471-4 [paper]

Loss of Vascular TMEM16A Impairs Cerebral Autoregulation and Exacerbates Ischemia-reperfusion Injury.

Journal: Translational stroke research

Status: code on request

[435] Code ↔ Paper doi:10.1073/pnas.2605466123 [paper, repository]

Parabrachial &lt;i&gt;Ntsr1&lt;/i&gt; neurons modulate food intake and anxiety through a projection to the ventromedial hypothalamus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: JLPauli/PBN-Ntsr1-Analysis (no license)

Status: code verified, 2 files readable

[436] doi:10.21203/rs.3.rs-10117408/v1 [paper]

Individualised mapping of living human brain mitochondria by MRI reveals signatures of bioenergetic defects.

Journal: Research Square (preprint)

Status: code on request

[437] doi:10.1016/j.xcrm.2026.102929 [paper]

Fatty-acid-based antimiR-23b delivery in the DMSXL model: A potential therapeutic strategy for brain dysfunction in myotonic dystrophy type 1.

Journal: Cell reports. Medicine

Status: code on request

[438] Code ↔ Paper doi:10.1038/s41586-026-10797-w [paper, repository]

A global molecular code for birth order and neuronal identity in Drosophila.

Journal: Nature

Authors' code: natverse/malevnc (GPL-3.0), flyconnectome/fancr (GPL-3.0), natverse/fafbseg (GPL-3.0), google/neuroglancer (Apache-2.0), FlyNeuroAtlas/DevSeqVNC (no license), Zenodo 17185431 (no license)

Status: code verified, 1,074 files readable, 2 matches

[439] Code ↔ Paper doi:10.3390/antiox15070908 [paper, repository]

Convergent Lower Expression of Redox-Linked Stress-Adaptation and Synaptic-Plasticity Genes in Major Depressive Disorder Across Seven Postmortem dlPFC Cohorts.

Journal: Antioxidants (Basel, Switzerland)

Authors' code: OSF 8bfrs (no license)

Status: empty repository

[440] doi:10.3390/ijms27146503 [paper, data]

Modeling Tay-Sachs Disease in Astrocyte-like Cells Reveals Significant Changes in the Transcriptomic Profile.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[441] Code ↔ Paper doi:10.1016/j.isci.2026.116878 [paper, repository]

Species-specific brain transcriptomic responses to clothianidin and sulfoxaflor in pollinators.

Journal: iScience

Authors' code: aswitwicka/species_insecticide_exposure (no license), Zenodo 21206760 (CC-BY-4.0)

Status: code verified, 20 files readable, 7 matches

[442] doi:10.1016/j.isci.2026.116861 [paper]

NAT10 inhibition corrects nuclear defects in tau mutant human neurons and extends lifespan in a &lt;i&gt;Drosophila&lt;/i&gt; tauopathy model.

Journal: iScience

Status: code on request

[443] Code ↔ Paper doi:10.1038/s41467-026-75444-4 [paper, repository]

Structural insights enable drug discovery for the neuronal NBCn2 carbonate transporter.

Journal: Nature communications

Authors' code: google-deepmind/alphafold3 (Apache-2.0), knk9596/SLC4A10_Modeling (no license)

Status: code verified, 152 files readable, 1 match

[444] doi:10.1038/s41467-026-75895-9 [paper, data]

Distinct Filament Conformation for Receptor-Bound Amyloid-β from Alzheimer's Disease Brain.

Journal: Nature communications

Status: data only, 6 datasets cited

[445] Code ↔ Paper doi:10.1038/s41467-026-75806-y [paper, repository]

Cryo-EM insights into isoform-specific properties of the IP&lt;sub&gt;3&lt;/sub&gt;R2 channel.

Journal: Nature communications

Authors' code: mlbaker-uth/pyHole (GPL-3.0)

Status: code verified, 17 files readable, 2 matches

Tuesday, 21 July 2026 (10 papers)

[446] doi:10.1007/s44297-026-00082-7 [paper]

Functional conservation of IR75q.2 in the recognition of volatile acids and aldehydes in two Spodoptera species.

Journal: Crop health

Status: data only

[447] doi:10.1172/jci197345 [paper, data]

Catecholamine-mediated release of miR-133a-3p from adipocytes regulates the onset of chronic primary pain.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[448] doi:10.1016/j.xpro.2026.104715 [paper]

Protocol for one-step design of a triple sgRNA-based CRISPR/Cas9 construct for neuronal gene knockout in the mouse brain.

Journal: STAR protocols

Status: code on request

[449] doi:10.1073/pnas.2605750123 [paper]

Light- and temperature-sensitive seizures are regulated by spatially distinct cortex glial populations in the central nervous system.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[450] Code ↔ Paper doi:10.1038/s41467-026-74961-6 [paper, repository]

Spatial multi-omics identifies early synaptic pruning and context-specific dopaminergic vulnerability in synucleinopathies.

Journal: Nature communications

Authors' code: fstrueb/spatial_nigra (no license)

Status: code verified, 11 files readable, 9 matches

[451] doi:10.1038/s44321-026-00491-9 [paper]

β-hydroxybutyrate restores social deficits by suppressing HDAC9 in the ACC of Shank3B-deficient mice.

Journal: EMBO molecular medicine

Status: data only

[452] Code ↔ Paper doi:10.1038/s44321-026-00488-4 [paper, repository]

DeepPlaque: a scalable multimodal platform for Aβ pathology and cell analysis in Alzheimer's disease.

Journal: EMBO molecular medicine

Authors' code: ChengJin-git/DeepPlaque (CC-BY-NC-ND-4.0)

Status: code verified, 5 files readable, 1 match

[453] Code ↔ Paper doi:10.1093/braincomms/fcag286 [paper, repository]

β-catenin deficiency in forebrain excitatory neurons induces fear memory deficits and physiological alterations.

Journal: Brain communications

Authors' code: doi:10.5061/dryad.kh18932pg (no license)

Status: code verified

[454] doi:10.1093/braincomms/fcag277 [paper]

Distinct brain extracellular vesicle microRNA profiles differ in frontotemporal dementia and Alzheimer's disease.

Journal: Brain communications

Status: code on request

[455] doi:10.1016/j.omtn.2026.103028 [paper]

Intranasal Tat-modified PEG-PCL nanomicelles delivering anti-RelA siRNA attenuate ischemia-reperfusion injury.

Journal: Molecular therapy. Nucleic acids

Status: code on request

Monday, 20 July 2026 (5 papers)

[456] Code ↔ Paper doi:10.1073/pnas.2614867123 [paper, repository]

Glucocorticoid receptors in oligodendrocyte precursor cells regulate hippocampal network plasticity and stress-induced behavior in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: aAbdz/nodes-of-Ranvier (MIT)

Status: code verified, 2 files readable

[457] doi:10.1016/j.bpr.2026.100278 [paper]

Information flow in cultured neuronal networks by transfer entropy.

Journal: Biophysical reports

Status: code on request

[458] Code ↔ Paper doi:10.1038/s41467-026-74823-1 [paper, repository]

Cerebellar activity is triggered by reach endpoint during learning of a complex locomotor task.

Journal: Nature communications

Authors' code: mgraupe/LocoReach-analysis-2026 (gpl)

Status: code verified, 55 files readable, 23 matches

[459] doi:10.2147/ijn.s621038 [paper, data]

Protein Lactylation in Central Nervous System Diseases: Molecular Mechanisms and Targeted Therapeutic Strategies.

Journal: International journal of nanomedicine

Status: data only, 1 dataset cited

[460] doi:10.3389/fimmu.2026.1805159 [paper, data]

Small extracellular vesicles proteome reveals persistent inflammatory and coagulopathic dysregulation in long-COVID.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

Sunday, 19 July 2026 (1 paper)

[461] Code ↔ Paper doi:10.1016/j.nicl.2026.104037 [paper, repository]

Revisiting intensity normalization in brain [&lt;sup&gt;18&lt;/sup&gt;F]FDG PET: What is reliable in autoimmune encephalitis?

Journal: NeuroImage. Clinical

Authors' code: rogeau/fdg-pet-intensitynorm-ae (MIT)

Status: code verified, 18 files readable

Saturday, 18 July 2026 (2 papers)

[462] doi:10.7759/cureus.112902 [paper, data]

DNA Methylation at Core N-Methyl-D-Aspartate (NMDA) Receptor Genes Reveals a Glutamatergic Signature of Aging in Post-COVID Whole Blood With Implications for Long-COVID Neuropsychiatric Sequelae.

Journal: Cureus

Status: data only, 1 dataset cited

[463] doi:10.7759/cureus.112906 [paper, data]

CPT2 as a Convergent Node Linking Age-Associated Neuronal H3K27me3 Remodeling to Nicotinamide Mononucleotide (NMN)-Induced Expression Rescue in Metabolic Tissues.

Journal: Cureus

Status: data only, 1 dataset cited

Friday, 17 July 2026 (10 papers)

[464] Code ↔ Paper doi:10.1242/jeb.252086 [paper, repository]

Transcriptional predictors of rescue behaviour in ants.

Journal: The Journal of experimental biology

Authors' code: ljaimesnino/RescueAnts (no license)

Status: code verified, 2 files readable, 10 matches

[465] doi:10.3892/mmr.2026.13967 [paper, data]

Sedanolide alleviates LPS‑induced depressive‑like behaviors by modulating the C3a/C3aR signaling axis and microglial glycolysis.

Journal: Molecular medicine reports

Status: data only, 1 dataset cited

[466] doi:10.1371/journal.pone.0351249 [paper, data]

TNF-α exacerbates postoperative plantar pain by regulating the expression of Nav1.8.

Journal: PloS one

Status: data only, 1 dataset cited

[467] Code ↔ Paper doi:10.1371/journal.pbio.3003863 [paper, repository]

Neuronal protein Sex-lethal modulates tRNA synthesis via the polymerase III subunit Polr3E in male Drosophila neurons.

Journal: PLoS biology

Authors' code: tonysouthall/Peak_calling_DamID (GPL-3.0)

Status: code verified, 3 files readable

[468] doi:10.1126/sciadv.aed6825 [paper, data]

SORLA up-regulation suppresses pathological effects in aged tauopathy mouse brain.

Journal: Science advances

Status: data only, 1 dataset cited

[469] Code ↔ Paper doi:10.1038/s41467-026-74202-w [paper, repository]

Repetitive neuronal activation regulates cellular maturation state via nuclear reprogramming.

Journal: Nature communications

Authors' code: tmurano/REPeatedOPtogeneticStimulation (MIT), Zenodo 19904295 (MIT)

Status: code verified, 25 files readable, 2 matches

[470] doi:10.1038/s41467-026-75726-x [paper, data]

Misregulation of T-box transcription factors drives BNP-NPR1 signalling underlying chronic itch.

Journal: Nature communications

Status: data only, 2 datasets cited

[471] doi:10.1038/s44319-026-00882-6 [paper]

Visual system function requires translational regulation of ATF4 by Hbs1-Pelo.

Journal: EMBO reports

Status: data only

[472] doi:10.1093/nargab/lqag074 [paper, data]

Cell-type-resolved RNA-seq reveals molecular signatures of sexual experience in &lt;i&gt;Drosophila&lt;/i&gt; neuromodulatory neurons.

Journal: NAR genomics and bioinformatics

Status: data only, 1 dataset cited

[473] doi:10.3390/ijms27146373 [paper, data]

Morphological Changes in the Rat Brain in the Early Post-Resuscitation Period: The Relationship Between Hypoxia-Sensitive Immunohistochemical Markers, Hemodynamic and Acid-Base Status.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 16 July 2026 (10 papers)

[474] Code ↔ Paper doi:10.64898/2026.07.14.26358047 [paper, repository]

From Genes to Neurochemistry: Excitation and Inhibition Mechanisms of Sensory Differences in Autism

Journal: medRxiv (preprint)

Authors' code: HeJasonL/BATD (no license)

Status: code verified, 27 files readable, 3 matches

[475] doi:10.1159/000553608 [paper, data]

The Mechanism of Carboxypeptidase E Regulating NLRP3 Inflammasome Signaling in the Pathogenesis of Depression-Like Behaviors in Mice.

Journal: Neuroimmunomodulation

Status: data only, 1 dataset cited

[476] Code ↔ Paper doi:10.1371/journal.pone.0333158 [paper, repository]

Alpha-synuclein overexpression reduces neural activity within a basal ganglia vocal nucleus in a zebra finch model.

Journal: PloS one

Authors' code: supp:PMC13374917/pone.0333158.s010.zip (no license)

Status: code verified, 8 files readable, 3 matches

[477] Code ↔ Paper doi:10.1371/journal.pgen.1012242 [paper, repository]

Wiz regulates clustered protocadherin genes by restricting CTCF/cohesin loop extrusion in a genomic-distance biased manner.

Journal: PLoS genetics

Authors' code: ljw20180420/COP (MIT)

Status: code verified, 80 files readable, 14 matches

[478] doi:10.1038/s41467-026-75367-0 [paper, data]

Heterogenous microglial reactivity contrasts with stable vascular transcriptional programs in mouse models of Alzheimer's, CADASIL, and Traumatic Brain Injury.

Journal: Nature communications

Status: data only, 1 dataset cited

[479] doi:10.1038/s41467-026-75564-x [paper, data]

Cooperative mechanism of neurotransmitter recognition and transport by the human vesicular polyamine transporter.

Journal: Nature communications

Status: data only, 1 dataset cited

[480] doi:10.1038/s41594-026-01845-0 [paper, data]

Conformational plasticity of human acid-sensing ion channel 1a.

Journal: Nature structural & molecular biology

Status: data only, 2 datasets cited

[481] doi:10.1016/j.isci.2026.116843 [paper]

A&lt;sub&gt;3&lt;/sub&gt; adenosine receptor regulates depression-like behaviors through astrocyte-nourished excitatory synapse formation.

Journal: iScience

Status: code on request

[482] doi:10.3390/genes17070813 [paper]

Multilayer Genomic Characterization of a Shared Genetic Factor Linking Depression-Related Liability and Reduced Physical Function.

Journal: Genes

Status: code on request

[483] doi:10.3390/ijms27146326 [paper]

Increased Cannabinoid Receptor 1-Immunopositive Perisomatic Input of Principal Cells in Human Epileptic Patients in Focal Cortical Dysplasia Type IIB.

Journal: International journal of molecular sciences

Status: code on request

Wednesday, 15 July 2026 (10 papers)

[484] Code ↔ Paper doi:10.1177/0271678x261471282 [paper, repository]

Single-cell analysis of microglia and monocyte dynamics uncovers distinct TNF-driven neuroimmune signatures in humans after intracerebral hemorrhage.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: lucascamillomd/brain-hematoma (no license)

Status: dead link

[485] Code ↔ Paper doi:10.1007/s00429-026-03146-0 [paper, repository]

Efferent projections of topographically distinct relaxin family peptide receptor-3 (RXFP3) lateral hypothalamus/zona incerta cells.

Journal: Brain structure & function

Authors' code: BrandonKR1 (no license)

Status: code verified

[486] Code ↔ Paper doi:10.1073/pnas.2601657123 [paper, repository]

Mitofusin-2 in ventral striatal D1 neurons regulates effort-based motivation through sex-specific mitochondrial-synaptic reprogramming.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 32252133 (CC-BY-4.0)

Status: code verified, 2 files readable

[487] Code ↔ Paper doi:10.1371/journal.pbio.3003901 [paper, repository]

Peroxisomal import is circadian in glia and regulates sleep and lipid metabolism.

Journal: PLoS biology

Authors' code: Zenodo 20637355 (CC-BY-4.0), jvaughen/das (no license)

Status: code verified, 6 files readable, 1 match

[488] Code ↔ Paper doi:10.1126/sciadv.aee3529 [paper, repository]

Learning dynamically regulates stimulus discrimination of ventral striatal D1 receptor expressing neurons.

Journal: Science advances

Authors' code: Zenodo 19024141 (CC-BY-4.0)

Status: code verified, 6 files readable, 3 matches

[489] Code ↔ Paper doi:10.1038/s41386-026-02492-1 [paper, repository]

Proximity in mice induced by an auditory-conditioned stimulus.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: wataruito/Codes_in_Threat-induced_proximity_Ito_et_al (no license)

Status: code verified, 3 files readable, 5 matches

[490] doi:10.1038/s41586-026-10793-0 [paper, data]

Cell-type signatures of Alzheimer's disease shared across population groups.

Journal: Nature

Status: data only, 3 datasets cited

[491] Code ↔ Paper doi:10.1038/s44319-026-00855-9 [paper, repository]

IRAK4 constrains cellular plasticity during chemically-induced cell fate reprogramming into multiple lineages.

Journal: EMBO reports

Authors' code: junjunlab/scRNAtoolVis (other)

Status: code verified, 15 files readable, 1 match

[492] doi:10.1016/j.isci.2026.116676 [paper]

Sleep differentially modulates synaptic vesicle protein 2A and spine density across cortical regions and development.

Journal: iScience

Status: code on request

[493] Code ↔ Paper doi:10.3389/frmbi.2026.1834726 [paper, repository]

Shotgun metagenomic analysis reveals taxonomic and functional alterations in the gut microbiome across prodromal and symptomatic Lewy body disease.

Journal: Frontiers in microbiomes

Authors' code: xiaowei-zhao-1111/LBD_Gut_Microbiome_2026 (no license)

Status: code verified, 9 files readable, 9 matches

Tuesday, 14 July 2026 (5 papers)

[494] doi:10.1128/mbio.01294-26 [paper, data]

Single-cell analysis of Powassan virus-infected brains reveals age-dependent neuroinflammatory crosstalk and progressive Alzheimer's-like APP/Aβ accumulation.

Journal: mBio

Status: code on request, 1 dataset cited

[495] doi:10.1172/jci.insight.200106 [paper, data]

HDAC6 inhibition alleviates mitochondrial trafficking in models of Charcot-Marie-Tooth disease type 2A.

Journal: JCI insight

Status: data only, 1 dataset cited

[496] doi:10.1073/pnas.2537017123 [paper, data]

Distinct cell type-specific mechanisms underlie cognitive dysfunction during persistent integrated stress response activation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[497] doi:10.1002/ame2.70252 [paper, data]

Single-cell atlas of neuroglial dynamics in SNCA-A53T Parkinson's disease mouse model.

Journal: Animal models and experimental medicine

Status: data only, 1 dataset cited

[498] doi:10.1016/j.ebiom.2026.106377 [paper]

Perilymphatic ATP plays a critical role in modulating cochlear function to protect from loud sound induced hearing loss.

Journal: EBioMedicine

Status: code on request

Monday, 13 July 2026 (9 papers)

[499] Code ↔ Paper doi:10.1242/jcs.264565 [paper, repository]

A conserved Arf-GEF modulates axonal integrity through RAB-35 by altering neuron-epidermal attachment.

Journal: Journal of cell science

Authors' code: Zenodo 6031709 (other-open), igorbonap/signal-probability-along-line (GPL-3.0)

Status: code verified, 16 files readable

[500] Code ↔ Paper doi:10.1016/j.celrep.2026.117670 [paper, repository]

Sustained AMPAR expression in CA3 neurons may mediate neuroprotection following FLASH-RT.

Journal: Cell reports

Authors' code: gitlab.unige.ch/lirr/nanostring_flash_mouse_brain (no license)

Status: dead link

[501] Code ↔ Paper doi:10.1038/s42255-026-01555-3 [paper, repository]

The perineurium integrates leptin with its sympathetic outflow to protect against obesity.

Journal: Nature metabolism

Authors' code: automet26/Sympathetic_Perineurium_Leptin_Obesity (MIT)

Status: code verified, 23 files readable, 15 matches

[502] doi:10.1038/s43587-026-01154-7 [paper, data]

Spatial mapping and senolytic targeting of senescent and disease-associated microglia in aged mouse brain white matter.

Journal: Nature aging

Status: data only, 1 dataset cited

[503] doi:10.1186/s13020-026-01445-6 [paper, data]

Electroacupuncture enhances anti-tumor immunity in TNBC by reducing NE release and blocking α2-AR-mediated NGF/Hippo signaling.

Journal: Chinese medicine

Status: data only, 2 datasets cited

[504] Code ↔ Paper doi:10.1002/acn3.70469 [paper, repository]

Quantitative MRI Uncovers Subtle Cortical Damage in Myelin Oligodendrocyte Glycoprotein Antibody-Associated Disease.

Journal: Annals of clinical and translational neurology

Authors' code: petergoodin/myelin_map (no license)

Status: code verified, 4 files readable, 1 match

[505] Code ↔ Paper doi:10.3389/fbinf.2026.1858866 [paper, repository]

Comparative evaluation of reference-free transcriptomic deconvolution highlights the importance of biological validation in astrocytes across Alzheimer's disease.

Journal: Frontiers in bioinformatics

Authors' code: mangaritar/Deconvolution-Astrocyte (no license)

Status: empty repository, 1 file readable

[506] doi:10.1016/j.isci.2026.116707 [paper]

Ptprz1b phosphatase binds Prickle2 to promote its membrane localization.

Journal: iScience

Status: code on request

[507] Code ↔ Paper doi:10.1016/j.isci.2026.116665 [paper, repository]

Exposure to non-nestmate odors changes the odorant receptor profile in &lt;i&gt;Acromyrmex echinatior&lt;/i&gt; leaf-cutting ants.

Journal: iScience

Authors' code: supp:PMC13382326/mmc6.zip (no license)

Status: code verified, 1 file readable, 1 match

Sunday, 12 July 2026 (1 paper)

[508] doi:10.1093/braincomms/fcag268 [paper, data]

A single mild closed-head injury disrupts synaptic strength and promotes hippocampal hyperexcitability in mice.

Journal: Brain communications

Status: data only, 1 dataset cited