OSCR

Molecular and functional dissection using CaMPARI-seq reveals the neuronal organization for dissociating optic flow-dependent behaviors.

Overview

Authors: Koji Matsuda1,2, Chung-Han Wang1,2,3, Hisaya Kakinuma1, Atsushi Toyoda4, Tomoya Shiraki5, Koichi Kawakami5, Fumi Kubo1,2
ORCID iDs: Koji Matsuda, Chung-Han Wang, Atsushi Toyoda, Koichi Kawakami, Fumi Kubo
  1. RIKEN Center for Brain Science, Wako, Saitama, Japan
  2. National Institute of Genetics, Systems Neuroscience Laboratory, Mishima, Shizuoka, Japan
  3. Genetics Program, Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka, Japan
  4. National Institute of Genetics, Comparative Genomics Laboratory, Mishima, Shizuoka, Japan
  5. National Institute of Genetics, Laboratory of Molecular and Developmental Biology, Mishima, Shizuoka, Japan
Institutions: National Institute of Genetics (Japan); RIKEN Center for Brain Science (Japan); The Graduate University for Advanced Studies, SOKENDAI (Japan)
Journal: Nature communications, volume 17, issue 1, article 3411
Dates: received 18 May 2025; accepted 23 March 2026; published online 17 April 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1038/s41467-026-71371-6 · PMID 41997902 · PMCID PMC13090360 · OpenAlex W4411126617
Open access: gold, a free copy (OpenAlex)
Preprint: doi:10.1101/2025.06.04.654794
Status: data only
Categories: zebrafish (organism), cellular / molecular (subfield)
Methods: Spectral & time-frequency, Statistics, Smoothing, state filtering, decompositions, Machine learning, Preprocessing, Evoked potentials, fMRI & imaging, Single-unit activity, calcium imaging, Physiology & signal measures
Keywords: Visual system, Sensorimotor processing
MeSH: Neurons*, Optic Flow*, Zebrafish*, Animals, Animals, Genetically Modified, Calcium, Larva, Single-Cell Analysis, Single-Cell Gene Expression Analysis, Zebrafish Proteins (* major topic)
Topic: Advanced Fluorescence Microscopy Techniques (Biophysics, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: Japan Society for the Promotion of Science (19K23787, 20K15906, 23K14293,24K02008); MEXT | Japan Society for the Promotion of Science (JSPS) (17K20147, 21H02586, 22K21353)
Citations: cited by 1 paper (Europe PMC); 77 references in the paper

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Code

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Code availability statement

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  • no repository, dataset or request procedure was recognized in it

Read it in the paper: doi.org/10.1038/s41467-026-71371-6.

Tracing map

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Data

Datasets cited

Data availability statement

The paper has a data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

Read it in the paper: doi.org/10.1038/s41467-026-71371-6.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 29 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 7 authors, 2 keywords, 10 MeSH terms, 2 funders, 77 references.

Cite

This paper

Matsuda, K., Wang, C.-H., Kakinuma, H., Toyoda, A., Shiraki, T., Kawakami, K., & Kubo, F. (2026). Molecular and functional dissection using CaMPARI-seq reveals the neuronal organization for dissociating optic flow-dependent behaviors. Nature communications, 17(1), 3411. https://doi.org/10.1038/s41467-026-71371-6

BibTeX

@article{matsuda2026molecular,
author = {Matsuda, Koji and Wang, Chung-Han and Kakinuma, Hisaya and Toyoda, Atsushi and Shiraki, Tomoya and Kawakami, Koichi and Kubo, Fumi},
title = {{Molecular and functional dissection using CaMPARI-seq reveals the neuronal organization for dissociating optic flow-dependent behaviors}},
journal = {Nature communications},
year = {2026},
month = apr,
volume = {17},
number = {1},
pages = {3411},
publisher = {Nature Publishing Group},
issn = {2041-1723},
doi = {10.1038/s41467-026-71371-6},
url = {https://doi.org/10.1038/s41467-026-71371-6},
pmid = {41997902},
pmcid = {PMC13090360}
}

RIS

TY - JOUR
AU - Matsuda, Koji
AU - Wang, Chung-Han
AU - Kakinuma, Hisaya
AU - Toyoda, Atsushi
AU - Shiraki, Tomoya
AU - Kawakami, Koichi
AU - Kubo, Fumi
TI - Molecular and functional dissection using CaMPARI-seq reveals the neuronal organization for dissociating optic flow-dependent behaviors
T2 - Nature communications
J2 - Nat Commun
PY - 2026
DA - 2026/04/17
VL - 17
IS - 1
SP - 3411
SN - 2041-1723
PB - Nature Publishing Group
DO - 10.1038/s41467-026-71371-6
UR - https://doi.org/10.1038/s41467-026-71371-6
LA - en
ER -

CSL-JSON

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"container-title": "Nature communications",
"author": [
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"ISSN": "2041-1723",
"publisher": "Nature Publishing Group",
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"language": "en",
"issued": {
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}

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