Probing molecular diversity and ultrastructure of brain cells with fluorescent aptamers.

Code ↔ Paper

The paper beside its authors' code: matches between them have not been computed for this paper yet.

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

The paper is loaded when this pane is shown.

The paper is loaded by your browser, with JavaScript: read it at doi.org or on Europe PMC.

The authors' code

Python · 1 line · 23 B · MIT

from .constant import *

__init__.py at commit 605e659, under MIT · at the source

OverviewAuthors: Xiaotang Lu1,2, Yuelong Wu1, Peter H Li3, Tao Fang4, Richard L Schalek1, Yaxin Su1, Daniel R Berger1, Jeffery D Carter5, Sean Lynch5, Daniel J Schneider5, Shashi Gupta5, Viren Jain3, Nebojsa Janjic5, Jeff W Lichtman1
ORCID iDs: Xiaotang Lu, Yuelong Wu, Peter H Li, Daniel R Berger, Daniel J Schneider, Viren Jain, Jeff W Lichtman
Department of Molecular and Cellular Biology and The Center for Brain Science, Harvard University, Cambridge, MA USA
Present Address: Department of Chemistry, University of Illinois Urbana-Champaign, Urbana, IL USA
Google Research, Mountain View, CA USA
Program of Cellular and Molecular Medicine, Boston Children’s Hospital, Boston, MA USA
SomaLogic, Boulder, CO USA
Institutions: Harvard University (United States); University of Illinois Urbana-Champaign (United States); Google (United States) (United States); Boston Children's Hospital (United States); SomaLogic (United States) (United States)
Journal: Nature communications, volume 17, issue 1, article 5795
Dates: received 7 September 2023; accepted 2 April 2026; published online 27 April 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1038/s41467-026-72180-7 · PMID 42045230 · PMCID PMC13332243 · OpenAlex W4386823352
Open access: gold, a free copy (OpenAlex)
Preprint: doi:10.1101/2023.09.18.558240
Status: code verified
Categories: histology / microscopy (modality), cellular / molecular (subfield)
Methods: Evoked potentials, fMRI & imaging
Keywords: Imaging, Cellular neuroscience
MeSH: Aptamers, Nucleotide*, Brain*, Fluorescent Dyes*, Neurons*, Animals, Microscopy, Electron (* major topic)
Topic: Advanced Electron Microscopy Techniques and Applications (Structural Biology, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: NIMH NIH HHS (K99 MH128891, UG3 MH123386, R00 MH128891); NINDS NIH HHS (U19 NS104653)
Citations: not cited yet (Europe PMC); 27 references in the paper
AbstractThe abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Repositories

Its files are read in the Code ↔ Paper reader above.

YuelongWu/feabas

License: MIT

State: the link answers, verified on 30 September 2026

Evidence: files inventoried

Commit: 605e6597a834d0a2e82cd331b94d3b4f876c62a9, 14 July 2026

Languages: Python (33)

Size: 43 files, 33 scripts

Software Heritage: not archived

Found in: “Code availability”

Holds: README, license file, environment (setup.py)

Not found: CITATION.cff, tests, continuous integration, documentation

Tools: NumPy (26 files), OpenCV (11 files), SciPy (11 files), Matplotlib (4 files), h5py (2 files), scikit-image (2 files)

Availability: 1 check, the latest on 30 September 2026: the link answers

30 September 2026: the link answers

35 files

feabas/__init__.py, Python, 1 line
feabas/aligner.py, Python, 1,637 lines
feabas/caching.py, Python, 596 lines
feabas/common.py, Python, 896 lines
feabas/concurrent.py, Python, 217 lines
feabas/config.py, Python, 310 lines
feabas/constant.py, Python, 45 lines
feabas/dal.py, Python, 1,558 lines
feabas/logging.py, Python, 151 lines
feabas/matcher.py, Python, 1,058 lines
feabas/material.py, Python, 551 lines
feabas/mesh.py, Python, 3,409 lines
feabas/mipmap.py, Python, 674 lines
feabas/multisem.py, Python, 227 lines
feabas/optimizer.py, Python, 2,190 lines
feabas/renderer.py, Python, 1,469 lines
feabas/spatial.py, Python, 1,358 lines
feabas/stitcher.py, Python, 2,046 lines
feabas/storage.py, Python, 202 lines
feabas/thumbnail.py, Python, 933 lines
feabas/visualization.py, Python, 269 lines
scripts/align_main.py, Python, 629 lines
scripts/stitch_main.py, Python, 301 lines
scripts/thumbnail_main.py, Python, 666 lines
setup.py, Python, 52 lines
tools/compute_alignment_residues.py, Python, 76 lines
tools/convert_manual_thumbnail_matches.py, Python, 43 lines
tools/export_match_to_bigwarp_csv.py, Python, 61 lines
tools/merge_manual_match.py, Python, 65 lines
tools/normalize_aligned_meshes.py, Python, 87 lines
tools/render_aligned_thumbnails.py, Python, 140 lines
tools/split_wrinkles.py, Python, 53 lines
tools/visualize_align_match_coverage.py, Python, 165 lines
LICENSE, License, 21 lines
README.md, Text, 348 lines

At the source: github.com/YuelongWu/feabas

google/ffn

License: Apache-2.0

State: the link answers, verified on 30 September 2026

Evidence: files inventoried

Commit: b8df2d96d7c8da057fd2702ced19732a08ab6ae4, 9 September 2026

Languages: Python (63), Jupyter (2)

Size: 87 files, 65 scripts

Software Heritage: archived

Found in: “Data Availability Statement”

Holds: README, license file, environment (pyproject.toml, requirements.txt, setup.py), tests, continuous integration, documentation, 2 notebooks

Not found: CITATION.cff

Tools: NumPy (37 files), TensorFlow (26 files), SciPy (15 files), JAX (10 files), h5py (6 files), Pillow (4 files), scikit-image (4 files), pandas (2 files), Matplotlib (1 file), NetworkX (1 file)

Availability: 1 check, the latest on 30 September 2026: the link answers

30 September 2026: the link answers

67 files

build_coordinates.py, Python, 120 lines
compute_partitions.py, Python, 262 lines
ffn/__init__.py, Python, 14 lines
ffn/inference/__init__.py, Python, 14 lines
ffn/inference/align.py, Python, 172 lines
ffn/inference/consensus.py, Python, 96 lines
ffn/inference/consensus_pb2.py, Python, 156 lines
ffn/inference/errors.py, Python, 20 lines
ffn/inference/executor.py, Python, 404 lines
ffn/inference/inference.py, Python, 843 lines
ffn/inference/inference_flags.py, Python, 43 lines
ffn/inference/inference_pb2.py, Python, 1,186 lines
ffn/inference/inference_utils.py, Python, 253 lines
ffn/inference/movement.py, Python, 267 lines
ffn/inference/resegmentation.py, Python, 301 lines
ffn/inference/resegmentation_analysis.py, Python, 260 lines
ffn/inference/resegmentation_pb2.py, Python, 469 lines
ffn/inference/runner.py, Python, 544 lines
ffn/inference/seed.py, Python, 544 lines
ffn/inference/segmentation.py, Python, 290 lines
ffn/inference/storage.py, Python, 511 lines
ffn/input/load_data_test.py, Python, 20 lines
ffn/input/segmentation.py, Python, 70 lines
ffn/input/volume.py, Python, 411 lines
ffn/input/volume_test.py, Python, 20 lines
ffn/jax/accelerator_utils.py, Python, 59 lines
ffn/jax/input_pipeline.py, Python, 489 lines
ffn/jax/main.py, Python, 43 lines
ffn/jax/tracker.py, Python, 64 lines
ffn/jax/train.py, Python, 764 lines
ffn/secgan/__init__.py, Python, 14 lines
ffn/secgan/main.py, Python, 47 lines
ffn/secgan/models.py, Python, 435 lines
ffn/secgan/models_test.py, Python, 79 lines
ffn/secgan/train.py, Python, 1,629 lines
ffn/secgan/train_test.py, Python, 14 lines
ffn/training/__init__.py, Python, 14 lines
ffn/training/augmentation.py, Python, 1,154 lines
ffn/training/examples.py, Python, 397 lines
ffn/training/import_util.py, Python, 23 lines
ffn/training/inputs.py, Python, 879 lines
ffn/training/inputs_test.py, Python, 98 lines
ffn/training/mask.py, Python, 177 lines
ffn/training/model.py, Python, 192 lines
ffn/training/models/__init__.py, Python, 14 lines
ffn/training/models/convstack_3d.py, Python, 102 lines
ffn/training/optimizer.py, Python, 128 lines
ffn/training/tracker.py, Python, 440 lines
ffn/training/tracker_test.py, Python, 88 lines
ffn/training/variables.py, Python, 131 lines
ffn/utils/__init__.py, Python, 14 lines
ffn/utils/bounding_box.py, Python, 412 lines
ffn/utils/bounding_box_pb2.py, Python, 148 lines
ffn/utils/decision_point.py, Python, 145 lines
ffn/utils/geom_utils.py, Python, 81 lines
ffn/utils/ortho_plane_visualization.py, Python, 134 lines
ffn/utils/png_to_h5.py, Python, 36 lines
ffn/utils/proofreading.py, Python, 584 lines
ffn/utils/tests/decision_point_test.py, Python, 93 lines
ffn/utils/vector_pb2.py, Python, 495 lines
notebooks/ffn_inference_colab_demo.ipynb, Jupyter, 83 lines
notebooks/jax_ffn_inference_liconn.ipynb, Jupyter, 109 lines
run_inference.py, Python, 60 lines
setup.py, Python, 64 lines
train.py, Python, 451 lines
LICENSE, License, 202 lines
README.md, Text, 142 lines

At the source: github.com/google/ffn

google/neuroglancer

License: Apache-2.0

State: the link answers, verified on 27 September 2026

Evidence: files inventoried

Commit: da443d25610b23c40c4a46ed9b92129e6203e68e, 22 September 2026

Languages: TypeScript (702), Python (133), C++ (23), JavaScript (20), Shell (11), C/C++ (6), Go (3), NEURON (1), Jupyter (1), Rust (1), C (1)

Size: 2,060 files, 902 scripts

Software Heritage: archived

Found in: “Data Availability Statement”

Holds: README, license file, environment (pyproject.toml, setup.py, uv.lock, docs/pyproject.toml, python/Dockerfile, src/mesh/draco/Dockerfile, src/sliceview/compresso/Dockerfile, src/sliceview/crackle/Dockerfile, src/sliceview/jxl/compile.Dockerfile, src/sliceview/jxl/optimize.Dockerfile, src/sliceview/png/Dockerfile), tests, continuous integration, documentation, 1 notebook

Not found: CITATION.cff

Tools: NumPy (67 files), Pillow (3 files), SciPy (3 files), pandas (1 file)

Availability: 1 check, the latest on 27 September 2026: the link answers

27 September 2026: the link answers

904 files

build_tools/after-version-change.ts, TypeScript, 48 lines
build_tools/build-package.ts, TypeScript, 247 lines
build_tools/cli.ts, TypeScript, 266 lines
build_tools/postpack.ts, TypeScript, 9 lines
build_tools/rspack/configuration_with_define.js, JavaScript, 13 lines
build_tools/rspack/rspack_config_from_cli.js, JavaScript, 12 lines
build_tools/update-conditions.ts, TypeScript, 147 lines
build_tools/update-example-dependencies.ts, TypeScript, 30 lines
build_tools/vitest/build_fake_gcs_server.ts, TypeScript, 57 lines
build_tools/vitest/fake_ngauth_server.ts, TypeScript, 98 lines
build_tools/vitest/polyfill-browser-globals-in-node.ts, TypeScript, 16 lines
build_tools/vitest/python_tools.ts, TypeScript, 26 lines
build_tools/vitest/test_data_server.ts, TypeScript, 51 lines
build_tools/vitest/vitest-environment-jsdom-patched/index.ts, TypeScript, 50 lines
cors_webserver.py, Python, 62 lines
docs/concepts/data_source_coordinate_space.screenshot.py, Python, 59 lines
docs/concepts/data_source_coordinate_transform.screenshot.py, Python, 59 lines
docs/conf.py, Python, 344 lines
docs/generate_logo.py, Python, 122 lines
docs/update_intersphinx_inventories.py, Python, 42 lines
docs/user-guide/navigation_mouse_cross_section_translate.video.py, Python, 28 lines
docs/user-guide/navigation_mouse_cross_section_zoom.video.py, Python, 30 lines
eslint.config.js, JavaScript, 124 lines
examples/parcel/parcel-project-built/src/index.js, JavaScript, 3 lines
examples/parcel/parcel-project-source/src/index.js, JavaScript, 3 lines
examples/rsbuild/rsbuild-project-built/rsbuild.config.ts, TypeScript, 45 lines
examples/rsbuild/rsbuild-project-built/src/index.js, JavaScript, 3 lines
examples/rsbuild/rsbuild-project-source/rsbuild.config.ts, TypeScript, 60 lines
examples/rsbuild/rsbuild-project-source/src/index.js, JavaScript, 3 lines
examples/rspack/rspack-project-built/rspack.config.js, JavaScript, 46 lines
examples/rspack/rspack-project-built/src/index.js, JavaScript, 3 lines
examples/rspack/rspack-project-source/rspack.config.js, JavaScript, 61 lines
examples/rspack/rspack-project-source/src/index.js, JavaScript, 3 lines
examples/vite/vite-project-built/vite.config.ts, TypeScript, 47 lines
examples/vite/vite-project-source/vite.config.ts, TypeScript, 51 lines
examples/webpack/webpack-project-built/src/index.js, JavaScript, 3 lines
examples/webpack/webpack-project-built/webpack.config.js, JavaScript, 48 lines
examples/webpack/webpack-project-source/src/index.js, JavaScript, 3 lines
examples/webpack/webpack-project-source/webpack.config.js, JavaScript, 58 lines
ngauth_server/auth.go, Go, 521 lines
ngauth_server/bounded_access_token.go, Go, 95 lines
ngauth_server/go.mod, NEURON, 30 lines
ngauth_server/main.go, Go, 52 lines
noxfile.py, Python, 195 lines
playwright.config.ts, TypeScript, 22 lines
python/build_tools/cibuildwheel_linux_cache_setup.sh, Shell, 12 lines
python/copy_openmesh_deps.py, Python, 49 lines
python/examples/agglomeration_split_tool_csv_to_sqlite.py, Python, 83 lines
python/examples/example.py, Python, 70 lines
python/examples/example_action.py, Python, 30 lines
python/examples/example_add_cube.py, Python, 55 lines
python/examples/example_annotation_properties.py, Python, 66 lines
python/examples/example_cdf.py, Python, 58 lines
python/examples/example_coordinate_arrays.py, Python, 58 lines
python/examples/example_coordinate_transform.py, Python, 46 lines
python/examples/example_cross_section.py, Python, 40 lines
python/examples/example_dask.py, Python, 53 lines
python/examples/example_fixed_token.py, Python, 20 lines
python/examples/example_grid_layout.py, Python, 39 lines
python/examples/example_layer_side_panels.py, Python, 39 lines
python/examples/example_local_volume_coordinate_arrays.py, Python, 63 lines
python/examples/example_overlay.py, Python, 49 lines
python/examples/example_partial_viewport.py, Python, 87 lines
python/examples/example_precomputed_gcs.py, Python, 16 lines
python/examples/example_read_precomputed_annotations.py, Python, 23 lines
python/examples/example_row_layout.py, Python, 29 lines
python/examples/example_signed_int.py, Python, 45 lines
python/examples/example_single_mesh_layer.py, Python, 16 lines
python/examples/example_skeletons.py, Python, 76 lines
python/examples/example_toggle_visibility.py, Python, 51 lines
python/examples/example_tool.py, Python, 24 lines
python/examples/extend_segments_tool.py, Python, 290 lines
python/examples/flood_filling_simulation.py, Python, 250 lines
python/examples/interactive_inference.py, Python, 115 lines
python/examples/jupyter-notebook-demo.ipynb, Jupyter, 177 lines
python/examples/synaptic_partners.py, Python, 192 lines
python/examples/webdriver_example.py, Python, 32 lines
python/examples/write_annotations.py, Python, 207 lines
python/ext/src/_neuroglancer.cc, C++, 208 lines
python/ext/src/compress_segmentation.cc, C++, 232 lines
python/ext/src/compress_segmentation.h, C/C++, 173 lines
python/ext/src/compress_segmentation_test.cc, C++, 229 lines
python/ext/src/generate_marching_cubes_tables.py, Python, 72 lines
python/ext/src/mesh_objects.cc, C++, 147 lines
python/ext/src/mesh_objects.h, C/C++, 38 lines
python/ext/src/on_demand_object_mesh_generator.cc, C++, 226 lines
python/ext/src/on_demand_object_mesh_generator.h, C/C++, 61 lines
python/ext/src/openmesh_dependencies.cc, C++, 22 lines
python/ext/src/voxel_mesh_generator.cc, C++, 479 lines
python/ext/src/voxel_mesh_generator.h, C/C++, 246 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/Mesh/ArrayKernel.cc, C++, 260 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/Mesh/ArrayKernelT.cc, C++, 315 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/Mesh/PolyConnectivity.cc, C++, 1,233 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/Mesh/PolyMeshT.cc, C++, 458 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/Mesh/TriConnectivity.cc, C++, 500 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/Mesh/TriMeshT.cc, C++, 93 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/System/config.h, C/C++, 111 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/System/omstream.cc, C++, 107 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/Utils/BaseProperty.cc, C++, 59 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Core/Utils/SingletonT.cc, C++, 85 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Tools/Decimater/BaseDecimaterT.cc, C++, 310 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Tools/Decimater/DecimaterT.cc, C++, 369 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Tools/Decimater/ModQuadricT.cc, C++, 159 lines
python/ext/third_party/openmesh/OpenMesh/src/OpenMesh/Tools/Decimater/Observer.cc, C++, 98 lines
python/neuroglancer/__init__.py, Python, 122 lines
python/neuroglancer/async_util.py, Python, 86 lines
python/neuroglancer/boss_credentials.py, Python, 55 lines
python/neuroglancer/chunks.py, Python, 39 lines
python/neuroglancer/cli.py, Python, 93 lines
python/neuroglancer/coordinate_space.py, Python, 320 lines
python/neuroglancer/credentials_provider.py, Python, 69 lines
python/neuroglancer/default_credentials_manager.py, Python, 56 lines
python/neuroglancer/downsample.py, Python, 42 lines
python/neuroglancer/downsample_scales.py, Python, 101 lines
python/neuroglancer/dvid_credentials.py, Python, 57 lines
python/neuroglancer/equivalence_map.py, Python, 193 lines
python/neuroglancer/futures.py, Python, 63 lines
python/neuroglancer/google_credentials.py, Python, 85 lines
python/neuroglancer/json_utils.py, Python, 59 lines
python/neuroglancer/json_wrappers.py, Python, 649 lines
python/neuroglancer/local_volume.py, Python, 386 lines
python/neuroglancer/random_token.py, Python, 21 lines
python/neuroglancer/read_precomputed_annotations.py, Python, 642 lines
python/neuroglancer/read_precomputed_segment_properties.py, Python, 94 lines
python/neuroglancer/read_precomputed_skeletons.py, Python, 102 lines
python/neuroglancer/screenshot.py, Python, 51 lines
python/neuroglancer/segment_colors.py, Python, 91 lines
python/neuroglancer/server.py, Python, 653 lines
python/neuroglancer/skeleton.py, Python, 101 lines
python/neuroglancer/static/__init__.py, Python, 102 lines
python/neuroglancer/static_file_server.py, Python, 64 lines
python/neuroglancer/test_util.py, Python, 13 lines
python/neuroglancer/test_utils.py, Python, 47 lines
python/neuroglancer/tool/__init__.py, Python, 1 line
python/neuroglancer/tool/agglomeration_split_tool.py, Python, 904 lines
python/neuroglancer/tool/cube.py, Python, 68 lines
python/neuroglancer/tool/edit_states.py, Python, 139 lines
python/neuroglancer/tool/filter_bodies.py, Python, 217 lines
python/neuroglancer/tool/mask_tool.py, Python, 319 lines
python/neuroglancer/tool/merge_tool.py, Python, 526 lines
python/neuroglancer/tool/save_meshes.py, Python, 92 lines
python/neuroglancer/tool/screenshot.py, Python, 815 lines
python/neuroglancer/tool/video_tool.py, Python, 664 lines
python/neuroglancer/trackable_state.py, Python, 217 lines
python/neuroglancer/url_state.py, Python, 158 lines
python/neuroglancer/viewer.py, Python, 56 lines
python/neuroglancer/viewer_base.py, Python, 507 lines
python/neuroglancer/viewer_config_state.py, Python, 360 lines
python/neuroglancer/viewer_state.py, Python, 1,996 lines
python/neuroglancer/webdriver.py, Python, 189 lines
python/neuroglancer/write_annotations.py, Python, 376 lines
python/tests/annotation_properties_test.py, Python, 113 lines
python/tests/annotation_tool_test.py, Python, 100 lines
python/tests/conftest.py, Python, 186 lines
python/tests/context_lost_test.py, Python, 59 lines
python/tests/display_dimensions_test.py, Python, 64 lines
python/tests/equivalence_map_test.py, Python, 78 lines
python/tests/fill_value_test.py, Python, 104 lines
python/tests/json_wrappers_test.py, Python, 59 lines
python/tests/linked_segment_group_test.py, Python, 64 lines
python/tests/local_volume_test.py, Python, 81 lines
python/tests/managed_layer_test.py, Python, 10 lines
python/tests/merge_tool_test.py, Python, 84 lines
python/tests/n5_test.py, Python, 74 lines
python/tests/on_demand_mesh_generator_test.py, Python, 56 lines
python/tests/picking_test.py, Python, 259 lines
python/tests/precomputed_test.py, Python, 93 lines
python/tests/screenshot_test.py, Python, 41 lines
python/tests/segment_colors_test.py, Python, 132 lines
python/tests/selected_values_test.py, Python, 97 lines
python/tests/shader_controls_test.py, Python, 186 lines
python/tests/skeleton_options_test.py, Python, 79 lines
python/tests/title_test.py, Python, 49 lines
python/tests/url_state_test.py, Python, 50 lines
python/tests/viewer_config_state_test.py, Python, 30 lines
python/tests/viewer_state_roundtrip_test.py, Python, 73 lines
python/tests/viewer_state_test.py, Python, 118 lines
python/tests/volume_rendering_test.py, Python, 172 lines
python/tests/write_annotations_test.py, Python, 151 lines
python/tests/zarr_test.py, Python, 668 lines
rspack.config.ts, TypeScript, 128 lines
setup.py, Python, 293 lines
src/annotation/annotation_layer_state.ts, TypeScript, 244 lines
src/annotation/backend.ts, TypeScript, 574 lines
src/annotation/base.ts, TypeScript, 170 lines
src/annotation/bounding_box.ts, TypeScript, 704 lines
src/annotation/ellipsoid.ts, TypeScript, 361 lines
src/annotation/frontend_source.browser_test.ts, TypeScript, 152 lines
src/annotation/frontend_source.ts, TypeScript, 1,058 lines
src/annotation/index.ts, TypeScript, 1,940 lines
src/annotation/line.ts, TypeScript, 300 lines
src/annotation/point.ts, TypeScript, 237 lines
src/annotation/polyline.ts, TypeScript, 342 lines
src/annotation/renderlayer.ts, TypeScript, 1,217 lines
src/annotation/selection.ts, TypeScript, 49 lines
src/annotation/type_handler.ts, TypeScript, 854 lines
src/async_computation.bundle.js, JavaScript, 8 lines
src/async_computation/decode_blosc.ts, TypeScript, 25 lines
src/async_computation/decode_blosc_request.ts, TypeScript, 22 lines
src/async_computation/decode_compresso.ts, TypeScript, 24 lines
src/async_computation/decode_compresso_request.ts, TypeScript, 22 lines
src/async_computation/decode_crackle.ts, TypeScript, 24 lines
src/async_computation/decode_crackle_request.ts, TypeScript, 21 lines
src/async_computation/decode_jpeg.ts, TypeScript, 88 lines
src/async_computation/decode_jpeg_request.ts, TypeScript, 29 lines
src/async_computation/decode_jxl.ts, TypeScript, 37 lines
src/async_computation/decode_jxl_request.ts, TypeScript, 27 lines
src/async_computation/decode_png.ts, TypeScript, 44 lines
src/async_computation/decode_png_request.ts, TypeScript, 36 lines
src/async_computation/decode_zstd.ts, TypeScript, 25 lines
src/async_computation/decode_zstd_node.ts, TypeScript, 30 lines
src/async_computation/decode_zstd_request.ts, TypeScript, 22 lines
src/async_computation/encode_compressed_segmentation.ts, TypeScript, 44 lines
src/async_computation/encode_compressed_segmentation_request.ts, TypeScript, 33 lines
src/async_computation/handler.ts, TypeScript, 58 lines
src/async_computation/index.ts, TypeScript, 33 lines
src/async_computation/obj_mesh.ts, TypeScript, 76 lines
src/async_computation/obj_mesh_request.ts, TypeScript, 25 lines
src/async_computation/request.ts, TypeScript, 124 lines
src/async_computation/vtk_mesh.ts, TypeScript, 35 lines
src/async_computation/vtk_mesh_request.ts, TypeScript, 25 lines
src/axes_lines.ts, TypeScript, 163 lines
src/chunk_manager/backend.ts, TypeScript, 1,391 lines
src/chunk_manager/base.ts, TypeScript, 121 lines
src/chunk_manager/frontend.ts, TypeScript, 533 lines
src/chunk_manager/generic_file_source.ts, TypeScript, 150 lines
src/chunk_worker.bundle.js, JavaScript, 14 lines
src/coordinate_transform.spec.ts, TypeScript, 517 lines
src/coordinate_transform.ts, TypeScript, 1,976 lines
src/credentials_provider/chunk_source_frontend.ts, TypeScript, 99 lines
src/credentials_provider/default_manager.ts, TypeScript, 40 lines
src/credentials_provider/http_request.ts, TypeScript, 85 lines
src/credentials_provider/index.ts, TypeScript, 207 lines
src/credentials_provider/interactive_credentials_provider.ts, TypeScript, 129 lines
src/credentials_provider/oauth2.ts, TypeScript, 94 lines
src/credentials_provider/shared.ts, TypeScript, 117 lines
src/credentials_provider/shared_common.ts, TypeScript, 20 lines
src/credentials_provider/shared_counterpart.ts, TypeScript, 131 lines
src/data_management_context.ts, TypeScript, 79 lines
src/data_panel_layout.ts, TypeScript, 978 lines
src/datasource/boss/api.ts, TypeScript, 63 lines
src/datasource/boss/async_computation.ts, TypeScript, 1 line
src/datasource/boss/backend.ts, TypeScript, 143 lines
src/datasource/boss/base.ts, TypeScript, 46 lines
src/datasource/boss/credentials_provider.ts, TypeScript, 172 lines
src/datasource/boss/frontend.ts, TypeScript, 980 lines
src/datasource/boss/register_credentials_provider.ts, TypeScript, 24 lines
src/datasource/boss/register_default.ts, TypeScript, 20 lines
src/datasource/brainmaps/api.ts, TypeScript, 108 lines
src/datasource/brainmaps/async_computation.ts, TypeScript, 1 line
src/datasource/brainmaps/backend.ts, TypeScript, 1,264 lines
src/datasource/brainmaps/base.ts, TypeScript, 123 lines
src/datasource/brainmaps/credentials_provider.ts, TypeScript, 37 lines
src/datasource/brainmaps/frontend.ts, TypeScript, 1,267 lines
src/datasource/brainmaps/register_credentials_provider.ts, TypeScript, 29 lines
src/datasource/brainmaps/register_default.ts, TypeScript, 36 lines
src/datasource/deepzoom/async_computation.ts, TypeScript, 2 lines
src/datasource/deepzoom/backend.ts, TypeScript, 151 lines
src/datasource/deepzoom/base.ts, TypeScript, 31 lines
src/datasource/deepzoom/frontend.ts, TypeScript, 345 lines
src/datasource/deepzoom/register_default.ts, TypeScript, 31 lines
src/datasource/default_provider.ts, TypeScript, 64 lines
src/datasource/dvid/api.ts, TypeScript, 102 lines
src/datasource/dvid/async_computation.ts, TypeScript, 1 line
src/datasource/dvid/backend.ts, TypeScript, 214 lines
src/datasource/dvid/base.ts, TypeScript, 44 lines
src/datasource/dvid/credentials_provider.ts, TypeScript, 86 lines
src/datasource/dvid/frontend.ts, TypeScript, 778 lines
src/datasource/dvid/register_credentials_provider.ts, TypeScript, 29 lines
src/datasource/dvid/register_default.ts, TypeScript, 20 lines
src/datasource/enabled_async_computation_modules.ts, TypeScript, 12 lines
src/datasource/enabled_backend_modules.ts, TypeScript, 14 lines
src/datasource/enabled_frontend_modules.ts, TypeScript, 18 lines
src/datasource/graphene/async_computation.ts, TypeScript, 1 line
src/datasource/graphene/backend.ts, TypeScript, 644 lines
src/datasource/graphene/base.ts, TypeScript, 174 lines
src/datasource/graphene/frontend.ts, TypeScript, 3,124 lines
src/datasource/graphene/register_default.ts, TypeScript, 23 lines
src/datasource/index.ts, TypeScript, 686 lines
src/datasource/kvstore_completions.ts, TypeScript, 218 lines
src/datasource/local.ts, TypeScript, 132 lines
src/datasource/n5/async_computation.ts, TypeScript, 2 lines
src/datasource/n5/backend.ts, TypeScript, 120 lines
src/datasource/n5/base.ts, TypeScript, 30 lines
src/datasource/n5/frontend.ts, TypeScript, 723 lines
src/datasource/n5/register_default.ts, TypeScript, 31 lines
src/datasource/nggraph/credentials_provider.ts, TypeScript, 100 lines
src/datasource/nggraph/frontend.ts, TypeScript, 798 lines
src/datasource/nggraph/register_default.ts, TypeScript, 20 lines
src/datasource/nifti/backend.ts, TypeScript, 316 lines
src/datasource/nifti/base.ts, TypeScript, 38 lines
src/datasource/nifti/frontend.ts, TypeScript, 260 lines
src/datasource/nifti/register_default.ts, TypeScript, 31 lines
src/datasource/obj/async_computation.ts, TypeScript, 1 line
src/datasource/obj/backend.ts, TypeScript, 45 lines
src/datasource/obj/register_default.ts, TypeScript, 26 lines
src/datasource/precomputed/async_computation.ts, TypeScript, 5 lines
src/datasource/precomputed/backend.ts, TypeScript, 1,095 lines
src/datasource/precomputed/base.ts, TypeScript, 118 lines
src/datasource/precomputed/frontend.ts, TypeScript, 1,426 lines
src/datasource/precomputed/register_default.ts, TypeScript, 30 lines
src/datasource/precomputed/sharded.ts, TypeScript, 312 lines
src/datasource/python/backend.ts, TypeScript, 137 lines
src/datasource/python/base.ts, TypeScript, 45 lines
src/datasource/python/frontend.browser_test.ts, TypeScript, 43 lines
src/datasource/python/frontend.ts, TypeScript, 671 lines
src/datasource/python/register_default.ts, TypeScript, 20 lines
src/datasource/render/async_computation.ts, TypeScript, 1 line
src/datasource/render/backend.ts, TypeScript, 155 lines
src/datasource/render/base.ts, TypeScript, 35 lines
src/datasource/render/frontend.ts, TypeScript, 846 lines
src/datasource/render/register_default.ts, TypeScript, 20 lines
src/datasource/state_share.ts, TypeScript, 163 lines
src/datasource/vtk/async_computation.ts, TypeScript, 1 line
src/datasource/vtk/backend.ts, TypeScript, 72 lines
src/datasource/vtk/parse.ts, TypeScript, 299 lines
src/datasource/vtk/register_default.ts, TypeScript, 26 lines
src/datasource/zarr/async_computation.ts, TypeScript, 2 lines
src/datasource/zarr/backend.ts, TypeScript, 100 lines
src/datasource/zarr/base.ts, TypeScript, 23 lines
src/datasource/zarr/codec/blosc/decode.ts, TypeScript, 35 lines
src/datasource/zarr/codec/blosc/resolve.ts, TypeScript, 30 lines
src/datasource/zarr/codec/bytes/decode.ts, TypeScript, 53 lines
src/datasource/zarr/codec/bytes/resolve.ts, TypeScript, 71 lines
src/datasource/zarr/codec/crc32c/decode.ts, TypeScript, 37 lines
src/datasource/zarr/codec/crc32c/resolve.ts, TypeScript, 36 lines
src/datasource/zarr/codec/decode.ts, TypeScript, 211 lines
src/datasource/zarr/codec/gzip/decode.ts, TypeScript, 36 lines
src/datasource/zarr/codec/gzip/resolve.ts, TypeScript, 39 lines
src/datasource/zarr/codec/index.ts, TypeScript, 66 lines
src/datasource/zarr/codec/resolve.ts, TypeScript, 226 lines
src/datasource/zarr/codec/sharding_indexed/decode.ts, TypeScript, 201 lines
src/datasource/zarr/codec/sharding_indexed/resolve.ts, TypeScript, 127 lines
src/datasource/zarr/codec/transpose/decode.ts, TypeScript, 36 lines
src/datasource/zarr/codec/transpose/resolve.ts, TypeScript, 113 lines
src/datasource/zarr/codec/zstd/decode.ts, TypeScript, 35 lines
src/datasource/zarr/codec/zstd/resolve.ts, TypeScript, 30 lines
src/datasource/zarr/frontend.ts, TypeScript, 627 lines
src/datasource/zarr/metadata/index.ts, TypeScript, 51 lines
src/datasource/zarr/metadata/parse.ts, TypeScript, 444 lines
src/datasource/zarr/metadata/parse_util.ts, TypeScript, 41 lines
src/datasource/zarr/ome.spec.ts, TypeScript, 1,419 lines
src/datasource/zarr/ome.ts, TypeScript, 881 lines
src/datasource/zarr/register_default.ts, TypeScript, 38 lines
src/display_context.ts, TypeScript, 718 lines
src/gpu_hash/hash_function.ts, TypeScript, 32 lines
src/gpu_hash/hash_table.benchmark.ts, TypeScript, 32 lines
src/gpu_hash/hash_table.spec.ts, TypeScript, 140 lines
src/gpu_hash/hash_table.ts, TypeScript, 456 lines
src/gpu_hash/shader.browser_test.ts, TypeScript, 188 lines
src/gpu_hash/shader.ts, TypeScript, 224 lines
src/help/input_event_bindings.ts, TypeScript, 268 lines
src/kvstore/auto_detect.ts, TypeScript, 281 lines
src/kvstore/backend.ts, TypeScript, 65 lines
src/kvstore/byte_range/file_handle.ts, TypeScript, 109 lines
src/kvstore/byte_range/index.ts, TypeScript, 75 lines
src/kvstore/byte_range/register.ts, TypeScript, 41 lines
src/kvstore/chunk_source_frontend.ts, TypeScript, 55 lines
src/kvstore/context.ts, TypeScript, 185 lines
src/kvstore/enabled_async_computation_modules.ts, TypeScript, 3 lines
src/kvstore/enabled_backend_modules.ts, TypeScript, 11 lines
src/kvstore/enabled_frontend_modules.ts, TypeScript, 13 lines
src/kvstore/frontend.ts, TypeScript, 50 lines
src/kvstore/gcs/index.ts, TypeScript, 150 lines
src/kvstore/gcs/register.ts, TypeScript, 45 lines
src/kvstore/gzip/file_handle.ts, TypeScript, 235 lines
src/kvstore/gzip/index.ts, TypeScript, 96 lines
src/kvstore/gzip/register.ts, TypeScript, 50 lines
src/kvstore/http/backend.ts, TypeScript, 26 lines
src/kvstore/http/common.ts, TypeScript, 115 lines
src/kvstore/http/frontend.ts, TypeScript, 61 lines
src/kvstore/http/html_directory_listing.ts, TypeScript, 128 lines
src/kvstore/http/read.ts, TypeScript, 292 lines
src/kvstore/http/register_backend.ts, TypeScript, 21 lines
src/kvstore/http/register_frontend.ts, TypeScript, 21 lines
src/kvstore/icechunk/async_computation.ts, TypeScript, 1 line
src/kvstore/icechunk/auto_detect.ts, TypeScript, 37 lines
src/kvstore/icechunk/backend.ts, TypeScript, 112 lines
src/kvstore/icechunk/complete_url.ts, TypeScript, 100 lines
src/kvstore/icechunk/crockford_base32.ts, TypeScript, 61 lines
src/kvstore/icechunk/decode_utils.ts, TypeScript, 217 lines
src/kvstore/icechunk/frontend.ts, TypeScript, 42 lines
src/kvstore/icechunk/list.ts, TypeScript, 77 lines
src/kvstore/icechunk/manifest.ts, TypeScript, 102 lines
src/kvstore/icechunk/metadata_cache.ts, TypeScript, 249 lines
src/kvstore/icechunk/read.ts, TypeScript, 216 lines
src/kvstore/icechunk/ref.ts, TypeScript, 48 lines
src/kvstore/icechunk/register_backend.ts, TypeScript, 46 lines
src/kvstore/icechunk/register_frontend.ts, TypeScript, 59 lines
src/kvstore/icechunk/snapshot.ts, TypeScript, 261 lines
src/kvstore/icechunk/url.ts, TypeScript, 98 lines
src/kvstore/index.ts, TypeScript, 276 lines
src/kvstore/middleauth/common.ts, TypeScript, 90 lines
src/kvstore/middleauth/credentials_provider.ts, TypeScript, 218 lines
src/kvstore/middleauth/register_backend.ts, TypeScript, 21 lines
src/kvstore/middleauth/register_credentials_provider.ts, TypeScript, 33 lines
src/kvstore/middleauth/register_frontend.ts, TypeScript, 21 lines
src/kvstore/ngauth/credentials_provider.ts, TypeScript, 182 lines
src/kvstore/ngauth/register.ts, TypeScript, 84 lines
src/kvstore/ngauth/register_credentials_provider.ts, TypeScript, 43 lines
src/kvstore/ocdbt/async_computation.ts, TypeScript, 1 line
src/kvstore/ocdbt/auto_detect.ts, TypeScript, 27 lines
src/kvstore/ocdbt/backend.ts, TypeScript, 124 lines
src/kvstore/ocdbt/btree.ts, TypeScript, 474 lines
src/kvstore/ocdbt/complete_url.ts, TypeScript, 153 lines
src/kvstore/ocdbt/decode_utils.ts, TypeScript, 234 lines
src/kvstore/ocdbt/frontend.ts, TypeScript, 42 lines
src/kvstore/ocdbt/indirect_data_reference.ts, TypeScript, 192 lines
src/kvstore/ocdbt/key.ts, TypeScript, 101 lines
src/kvstore/ocdbt/list.ts, TypeScript, 232 lines
src/kvstore/ocdbt/list_versions.ts, TypeScript, 167 lines
src/kvstore/ocdbt/manifest.ts, TypeScript, 275 lines
src/kvstore/ocdbt/metadata_cache.ts, TypeScript, 191 lines
src/kvstore/ocdbt/read.ts, TypeScript, 154 lines
src/kvstore/ocdbt/read_version.ts, TypeScript, 330 lines
src/kvstore/ocdbt/register_backend.ts, TypeScript, 46 lines
src/kvstore/ocdbt/register_frontend.ts, TypeScript, 59 lines
src/kvstore/ocdbt/url.ts, TypeScript, 56 lines
src/kvstore/ocdbt/version_specifier.ts, TypeScript, 188 lines
src/kvstore/ocdbt/version_tree.ts, TypeScript, 621 lines
src/kvstore/proxy.ts, TypeScript, 250 lines
src/kvstore/register.ts, TypeScript, 79 lines
src/kvstore/s3/backend.ts, TypeScript, 26 lines
src/kvstore/s3/common.ts, TypeScript, 175 lines
src/kvstore/s3/frontend.ts, TypeScript, 52 lines
src/kvstore/s3/list.ts, TypeScript, 241 lines
src/kvstore/s3/register_backend.ts, TypeScript, 21 lines
src/kvstore/s3/register_frontend.ts, TypeScript, 21 lines
src/kvstore/shared_common.ts, TypeScript, 22 lines
src/kvstore/url.ts, TypeScript, 221 lines
src/kvstore/zip/auto_detect.ts, TypeScript, 46 lines
src/kvstore/zip/backend.ts, TypeScript, 256 lines
src/kvstore/zip/frontend.ts, TypeScript, 40 lines
src/kvstore/zip/metadata.ts, TypeScript, 658 lines
src/kvstore/zip/register_backend.ts, TypeScript, 43 lines
src/kvstore/zip/register_frontend.ts, TypeScript, 46 lines
src/layer/annotation/index.ts, TypeScript, 983 lines
src/layer/annotation/property_tools.spec.ts, TypeScript, 94 lines
src/layer/annotation/property_tools.ts, TypeScript, 669 lines
src/layer/annotation/shader_ui_property_list.ts, TypeScript, 49 lines
src/layer/annotation/tool_state.ts, TypeScript, 56 lines
src/layer/enabled_frontend_modules.ts, TypeScript, 5 lines
src/layer/image/index.ts, TypeScript, 614 lines
src/layer/index.ts, TypeScript, 2,545 lines
src/layer/layer_data_source.ts, TypeScript, 501 lines
src/layer/multi_channel_setup.ts, TypeScript, 430 lines
src/layer/segmentation/index.ts, TypeScript, 1,416 lines
src/layer/segmentation/json_keys.ts, TypeScript, 28 lines
src/layer/segmentation/layer_controls.ts, TypeScript, 156 lines
src/layer/single_mesh/index.ts, TypeScript, 281 lines
src/layer_group_viewer.ts, TypeScript, 638 lines
src/layer_groups_layout.ts, TypeScript, 823 lines
src/layout.ts, TypeScript, 51 lines
src/main.bundle.js, JavaScript, 5 lines
src/main.ts, TypeScript, 23 lines
src/main_module.ts, TypeScript, 4 lines
src/main_python.ts, TypeScript, 235 lines
src/mesh/backend.ts, TypeScript, 894 lines
src/mesh/base.ts, TypeScript, 51 lines
src/mesh/draco/build.sh, Shell, 13 lines
src/mesh/draco/build_wasm.py, Python, 138 lines
src/mesh/draco/draco_overlay/draco/draco_features.h, C/C++, 11 lines
src/mesh/draco/generate_first_bit_table.py, Python, 28 lines
src/mesh/draco/index.ts, TypeScript, 130 lines
src/mesh/draco/neuroglancer_draco.cc, C++, 158 lines
src/mesh/draco/stub.js, JavaScript, 6 lines
src/mesh/frontend.ts, TypeScript, 1,170 lines
src/mesh/multiscale.spec.ts, TypeScript, 1,048 lines
src/mesh/multiscale.ts, TypeScript, 403 lines
src/mesh/triangle_strips.spec.ts, TypeScript, 321 lines
src/mesh/triangle_strips.ts, TypeScript, 349 lines
src/navigation_state.ts, TypeScript, 2,377 lines
src/object_picking.ts, TypeScript, 131 lines
src/overlay.ts, TypeScript, 119 lines
src/perspective_view/backend.ts, TypeScript, 50 lines
src/perspective_view/base.ts, TypeScript, 17 lines
src/perspective_view/panel.ts, TypeScript, 1,510 lines
src/perspective_view/render_layer.ts, TypeScript, 124 lines
src/projection_parameters.ts, TypeScript, 78 lines
src/python_integration/api.ts, TypeScript, 257 lines
src/python_integration/credentials_provider.ts, TypeScript, 99 lines
src/python_integration/event_action_map.ts, TypeScript, 52 lines
src/python_integration/prefetch.ts, TypeScript, 119 lines
src/python_integration/remote_actions.ts, TypeScript, 87 lines
src/python_integration/remote_status_messages.ts, TypeScript, 96 lines
src/python_integration/screenshots.ts, TypeScript, 235 lines
src/python_integration/volume.ts, TypeScript, 598 lines
src/render_coordinate_transform.ts, TypeScript, 873 lines
src/render_layer_backend.ts, TypeScript, 104 lines
src/render_layer_common.ts, TypeScript, 21 lines
src/render_scale_statistics.ts, TypeScript, 161 lines
src/rendered_data_panel.ts, TypeScript, 850 lines
src/rendered_data_panel_picking.spec.ts, TypeScript, 84 lines
src/rendered_data_panel_picking.ts, TypeScript, 163 lines
src/renderlayer.ts, TypeScript, 290 lines
src/segment_color.browser_test.ts, TypeScript, 67 lines
src/segment_color.ts, TypeScript, 181 lines
src/segmentation_display_state/backend.ts, TypeScript, 100 lines
src/segmentation_display_state/base.ts, TypeScript, 137 lines
src/segmentation_display_state/frontend.ts, TypeScript, 1,175 lines
src/segmentation_display_state/property_map.spec.ts, TypeScript, 416 lines
src/segmentation_display_state/property_map.ts, TypeScript, 1,339 lines
src/segmentation_graph/local.spec.ts, TypeScript, 88 lines
src/segmentation_graph/local.ts, TypeScript, 304 lines
src/segmentation_graph/segment_id.ts, TypeScript, 29 lines
src/segmentation_graph/source.ts, TypeScript, 146 lines
src/shared_disjoint_sets.ts, TypeScript, 194 lines
src/shared_watchable_value.ts, TypeScript, 109 lines
src/single_mesh/backend.ts, TypeScript, 257 lines
src/single_mesh/base.ts, TypeScript, 56 lines
src/single_mesh/frontend.browser_test.ts, TypeScript, 97 lines
src/single_mesh/frontend.ts, TypeScript, 732 lines
src/skeleton/backend.ts, TypeScript, 202 lines
src/skeleton/base.ts, TypeScript, 24 lines
src/skeleton/decode_precomputed_skeleton.ts, TypeScript, 67 lines
src/skeleton/decode_swc_skeleton.spec.ts, TypeScript, 34 lines
src/skeleton/decode_swc_skeleton.ts, TypeScript, 113 lines
src/skeleton/frontend.ts, TypeScript, 901 lines
src/sliceview/backend.ts, TypeScript, 583 lines
src/sliceview/backend_chunk_decoders/bossNpz.ts, TypeScript, 65 lines
src/sliceview/backend_chunk_decoders/compressed_segmentation.ts, TypeScript, 26 lines
src/sliceview/backend_chunk_decoders/compresso.ts, TypeScript, 35 lines
src/sliceview/backend_chunk_decoders/crackle.ts, TypeScript, 35 lines
src/sliceview/backend_chunk_decoders/index.ts, TypeScript, 27 lines
src/sliceview/backend_chunk_decoders/jpeg.ts, TypeScript, 40 lines
src/sliceview/backend_chunk_decoders/jxl.ts, TypeScript, 38 lines
src/sliceview/backend_chunk_decoders/ndstoreNpz.ts, TypeScript, 59 lines
src/sliceview/backend_chunk_decoders/png.ts, TypeScript, 44 lines
src/sliceview/backend_chunk_decoders/postprocess.ts, TypeScript, 73 lines
src/sliceview/backend_chunk_decoders/raw.ts, TypeScript, 52 lines
src/sliceview/base.spec.ts, TypeScript, 202 lines
src/sliceview/base.ts, TypeScript, 1,065 lines
src/sliceview/bounding_box_shader_helper.ts, TypeScript, 442 lines
src/sliceview/chunk_format_handlers.ts, TypeScript, 18 lines
src/sliceview/chunk_format_testing.ts, TypeScript, 147 lines
src/sliceview/chunk_layout.ts, TypeScript, 93 lines
src/sliceview/compressed_segmentation/chunk_format.browser_test.ts, TypeScript, 148 lines
src/sliceview/compressed_segmentation/chunk_format.ts, TypeScript, 426 lines
src/sliceview/compressed_segmentation/decode_common.ts, TypeScript, 256 lines
src/sliceview/compressed_segmentation/decode_uint32.ts, TypeScript, 28 lines
src/sliceview/compressed_segmentation/decode_uint64.ts, TypeScript, 28 lines
src/sliceview/compressed_segmentation/encode.browser_benchmark.ts, TypeScript, 68 lines
src/sliceview/compressed_segmentation/encode_common.ts, TypeScript, 340 lines
src/sliceview/compressed_segmentation/encode_uint32.spec.ts, TypeScript, 360 lines
src/sliceview/compressed_segmentation/encode_uint32.ts, TypeScript, 29 lines
src/sliceview/compressed_segmentation/encode_uint64.spec.ts, TypeScript, 373 lines
src/sliceview/compressed_segmentation/encode_uint64.ts, TypeScript, 30 lines
src/sliceview/compressed_segmentation/test_util.ts, TypeScript, 34 lines
src/sliceview/compresso/build.sh, Shell, 13 lines
src/sliceview/compresso/build_wasm.sh, Shell, 23 lines
src/sliceview/compresso/compresso_wasm.cc, C++, 33 lines
src/sliceview/compresso/index.ts, TypeScript, 124 lines
src/sliceview/crackle/build.sh, Shell, 13 lines
src/sliceview/crackle/build_wasm.sh, Shell, 23 lines
src/sliceview/crackle/crackle_wasm.cc, C++, 30 lines
src/sliceview/crackle/index.ts, TypeScript, 159 lines
src/sliceview/frontend.ts, TypeScript, 1,119 lines
src/sliceview/jxl/build.sh, Shell, 22 lines
src/sliceview/jxl/build_wasm.sh, Shell, 6 lines
src/sliceview/jxl/index.ts, TypeScript, 166 lines
src/sliceview/jxl/optimize_wasm.sh, Shell, 4 lines
src/sliceview/jxl/src/lib.rs, Rust, 109 lines
src/sliceview/panel.ts, TypeScript, 568 lines
src/sliceview/png/build.sh, Shell, 13 lines
src/sliceview/png/build_wasm.sh, Shell, 30 lines
src/sliceview/png/index.ts, TypeScript, 258 lines
src/sliceview/png/png_wasm.c, C, 73 lines
src/sliceview/renderlayer.ts, TypeScript, 295 lines
src/sliceview/single_texture_chunk_format.ts, TypeScript, 157 lines
src/sliceview/uncompressed_chunk_format.browser_test.ts, TypeScript, 88 lines
src/sliceview/uncompressed_chunk_format.ts, TypeScript, 417 lines
src/sliceview/volume/backend.ts, TypeScript, 159 lines
src/sliceview/volume/base.ts, TypeScript, 312 lines
src/sliceview/volume/frontend.ts, TypeScript, 292 lines
src/sliceview/volume/image_renderlayer.ts, TypeScript, 161 lines
src/sliceview/volume/renderlayer.ts, TypeScript, 729 lines
src/sliceview/volume/segmentation_renderlayer.ts, TypeScript, 460 lines
src/sliceview/wire_frame.ts, TypeScript, 212 lines
src/status.ts, TypeScript, 231 lines
src/third_party/codemirror-glsl.ts, TypeScript, 260 lines
src/third_party/jpgjs/jpg.d.ts, TypeScript, 31 lines
src/third_party/jpgjs/jpg.js, JavaScript, 5,255 lines
src/trackable_alpha.ts, TypeScript, 29 lines
src/trackable_blend.ts, TypeScript, 43 lines
src/trackable_boolean.ts, TypeScript, 137 lines
src/trackable_finite_float.ts, TypeScript, 29 lines
src/trackable_value.ts, TypeScript, 542 lines
src/trackable_vec3.ts, TypeScript, 58 lines
src/ui/annotation_properties.ts, TypeScript, 204 lines
src/ui/annotation_schema_tab.ts, TypeScript, 1,902 lines
src/ui/annotations.ts, TypeScript, 2,940 lines
src/ui/bounded_number_input.spec.ts, TypeScript, 263 lines
src/ui/bounded_number_input.ts, TypeScript, 100 lines
src/ui/command.ts, TypeScript, 143 lines
src/ui/command_catalog.spec.ts, TypeScript, 250 lines
src/ui/command_catalog.ts, TypeScript, 468 lines
src/ui/command_palette.ts, TypeScript, 355 lines
src/ui/command_registry.spec.ts, TypeScript, 132 lines
src/ui/command_registry.ts, TypeScript, 94 lines
src/ui/context_menu.ts, TypeScript, 150 lines
src/ui/default_clipboard_handling.spec.ts, TypeScript, 55 lines
src/ui/default_clipboard_handling.ts, TypeScript, 89 lines
src/ui/default_commands.spec.ts, TypeScript, 119 lines
src/ui/default_commands.ts, TypeScript, 240 lines
src/ui/default_input_event_bindings.ts, TypeScript, 206 lines
src/ui/default_viewer.ts, TypeScript, 29 lines
src/ui/default_viewer_setup.ts, TypeScript, 71 lines
src/ui/disable_default_actions.ts, TypeScript, 40 lines
src/ui/drag_and_drop.ts, TypeScript, 110 lines
src/ui/layer_bar.ts, TypeScript, 517 lines
src/ui/layer_data_sources_tab.ts, TypeScript, 597 lines
src/ui/layer_drag_and_drop.ts, TypeScript, 593 lines
src/ui/layer_list_panel.ts, TypeScript, 487 lines
src/ui/layer_side_panel.ts, TypeScript, 481 lines
src/ui/layer_side_panel_state.ts, TypeScript, 363 lines
src/ui/minimal_viewer.ts, TypeScript, 43 lines
src/ui/position_drag_and_drop.ts, TypeScript, 96 lines
src/ui/screenshot_menu.ts, TypeScript, 916 lines
src/ui/segment_list.ts, TypeScript, 1,657 lines
src/ui/segment_select_tools.ts, TypeScript, 186 lines
src/ui/segment_split_merge_tools.ts, TypeScript, 532 lines
src/ui/segmentation_display_options_tab.ts, TypeScript, 144 lines
src/ui/selection_details.ts, TypeScript, 209 lines
src/ui/side_panel.ts, TypeScript, 779 lines
src/ui/side_panel_location.ts, TypeScript, 182 lines
src/ui/state_editor.ts, TypeScript, 159 lines
src/ui/statistics.ts, TypeScript, 409 lines
src/ui/title.ts, TypeScript, 36 lines
src/ui/tool.ts, TypeScript, 1,014 lines
src/ui/tool_drag_and_drop.ts, TypeScript, 42 lines
src/ui/tool_palette.ts, TypeScript, 1,331 lines
src/ui/tool_query.spec.ts, TypeScript, 322 lines
src/ui/tool_query.ts, TypeScript, 353 lines
src/ui/url_hash_binding.ts, TypeScript, 174 lines
src/ui/viewer_settings.ts, TypeScript, 148 lines
src/uint64_map.spec.ts, TypeScript, 125 lines
src/uint64_map.ts, TypeScript, 138 lines
src/uint64_ordered_set.ts, TypeScript, 117 lines
src/uint64_set.spec.ts, TypeScript, 101 lines
src/uint64_set.ts, TypeScript, 176 lines
src/util/abort.spec.ts, TypeScript, 91 lines
src/util/abort.ts, TypeScript, 137 lines
src/util/affine.spec.ts, TypeScript, 206 lines
src/util/affine.ts, TypeScript, 66 lines
src/util/animation_frame_debounce.ts, TypeScript, 64 lines
src/util/array.spec.ts, TypeScript, 307 lines
src/util/array.ts, TypeScript, 652 lines
src/util/automatic_focus.ts, TypeScript, 123 lines
src/util/base64.ts, TypeScript, 27 lines
src/util/bigint.ts, TypeScript, 62 lines
src/util/clipboard.spec.ts, TypeScript, 91 lines
src/util/clipboard.ts, TypeScript, 59 lines
src/util/color.browser_test.ts, TypeScript, 94 lines
src/util/color.ts, TypeScript, 249 lines
src/util/colorspace.ts, TypeScript, 106 lines
src/util/compare.ts, TypeScript, 22 lines
src/util/completion.ts, TypeScript, 181 lines
src/util/data_type.ts, TypeScript, 83 lines
src/util/disjoint_sets.spec.ts, TypeScript, 101 lines
src/util/disjoint_sets.ts, TypeScript, 241 lines
src/util/disposable.ts, TypeScript, 143 lines
src/util/dom.ts, TypeScript, 84 lines
src/util/drag_and_drop.spec.ts, TypeScript, 33 lines
src/util/drag_and_drop.ts, TypeScript, 262 lines
src/util/dropdown.ts, TypeScript, 112 lines
src/util/empirical_cdf.browser_test.ts, TypeScript, 256 lines
src/util/empirical_cdf.ts, TypeScript, 198 lines
src/util/endian.spec.ts, TypeScript, 34 lines
src/util/endian.ts, TypeScript, 145 lines
src/util/erf.ts, TypeScript, 39 lines
src/util/error.ts, TypeScript, 46 lines
src/util/event_action_map.ts, TypeScript, 499 lines
src/util/false.ts, TypeScript, 3 lines
src/util/file_download.ts, TypeScript, 27 lines
src/util/float.ts, TypeScript, 78 lines
src/util/float32_to_string.spec.ts, TypeScript, 70 lines
src/util/float32_to_string.ts, TypeScript, 38 lines
src/util/framerate.spec.ts, TypeScript, 128 lines
src/util/framerate.ts, TypeScript, 338 lines
src/util/geom.spec.ts, TypeScript, 201 lines
src/util/geom.ts, TypeScript, 524 lines
src/util/google_oauth2.ts, TypeScript, 263 lines
src/util/google_tag_manager.ts, TypeScript, 16 lines
src/util/gzip.ts, TypeScript, 71 lines
src/util/hash.ts, TypeScript, 149 lines
src/util/hex.ts, TypeScript, 35 lines
src/util/hierarchical_map.ts, TypeScript, 202 lines
src/util/http_request.ts, TypeScript, 146 lines
src/util/json.spec.ts, TypeScript, 87 lines
src/util/json.ts, TypeScript, 797 lines
src/util/keyboard_bindings.ts, TypeScript, 171 lines
src/util/leb128.spec.ts, TypeScript, 46 lines
src/util/leb128.ts, TypeScript, 52 lines
src/util/lerp.ts, TypeScript, 339 lines
src/util/linked_list.ts, TypeScript, 91 lines
src/util/longest_common_prefix.ts, TypeScript, 44 lines
src/util/matrix.spec.ts, TypeScript, 381 lines
src/util/matrix.ts, TypeScript, 360 lines
src/util/memoize.spec.ts, TypeScript, 178 lines
src/util/memoize.ts, TypeScript, 172 lines
src/util/message_list.ts, TypeScript, 80 lines
src/util/mixin.ts, TypeScript, 27 lines
src/util/mouse_bindings.ts, TypeScript, 99 lines
src/util/mouse_drag.ts, TypeScript, 55 lines
src/util/npy.spec.ts, TypeScript, 68 lines
src/util/npy.ts, TypeScript, 101 lines
src/util/number.ts, TypeScript, 22 lines
src/util/number_to_string.spec.ts, TypeScript, 28 lines
src/util/number_to_string.ts, TypeScript, 26 lines
src/util/numpy_dtype.ts, TypeScript, 81 lines
src/util/object_id.ts, TypeScript, 32 lines
src/util/pairing_heap.ts, TypeScript, 200 lines
src/util/polyfills.ts, TypeScript, 2 lines
src/util/progress_listener.ts, TypeScript, 177 lines
src/util/random.ts, TypeScript, 52 lines
src/util/ranked_matches.spec.ts, TypeScript, 61 lines
src/util/ranked_matches.ts, TypeScript, 32 lines
src/util/screenshot_manager.ts, TypeScript, 462 lines
src/util/scroll_into_view.ts, TypeScript, 39 lines
src/util/si_units.spec.ts, TypeScript, 79 lines
src/util/si_units.ts, TypeScript, 194 lines
src/util/signal.spec.ts, TypeScript, 132 lines
src/util/signal.ts, TypeScript, 144 lines
src/util/signal_binding_updater.ts, TypeScript, 35 lines
src/util/spatial_units.ts, TypeScript, 81 lines
src/util/string.ts, TypeScript, 19 lines
src/util/touch_bindings.ts, TypeScript, 365 lines
src/util/trackable.ts, TypeScript, 201 lines
src/util/trackable_enum.ts, TypeScript, 53 lines
src/util/trackable_screenshot_mode.ts, TypeScript, 30 lines
src/util/true.ts, TypeScript, 3 lines
src/util/vector.ts, TypeScript, 131 lines
src/util/velocity_estimation.ts, TypeScript, 102 lines
src/util/viewer_resolution_stats.ts, TypeScript, 480 lines
src/util/watchable_map.ts, TypeScript, 109 lines
src/util/wheel_zoom.ts, TypeScript, 36 lines
src/util/zorder.spec.ts, TypeScript, 68 lines
src/util/zorder.ts, TypeScript, 136 lines
src/viewer.ts, TypeScript, 1,356 lines
src/viewer_state.ts, TypeScript, 39 lines
src/visibility_priority/backend.ts, TypeScript, 70 lines
src/visibility_priority/frontend.ts, TypeScript, 107 lines
src/volume_rendering/backend.ts, TypeScript, 205 lines
src/volume_rendering/base.ts, TypeScript, 197 lines
src/volume_rendering/trackable_volume_rendering_mode.ts, TypeScript, 26 lines
src/volume_rendering/volume_render_layer.browser_test.ts, TypeScript, 74 lines
src/volume_rendering/volume_render_layer.ts, TypeScript, 1,392 lines
src/webgl/bounding_box.ts, TypeScript, 112 lines
src/webgl/buffer.ts, TypeScript, 131 lines
src/webgl/circles.ts, TypeScript, 108 lines
src/webgl/colormaps.ts, TypeScript, 42 lines
src/webgl/context.ts, TypeScript, 75 lines
src/webgl/dynamic_shader.ts, TypeScript, 278 lines
src/webgl/ellipse.ts, TypeScript, 195 lines
src/webgl/empirical_cdf.ts, TypeScript, 239 lines
src/webgl/index_emulation.browser_test.ts, TypeScript, 57 lines
src/webgl/index_emulation.ts, TypeScript, 139 lines
src/webgl/lerp.browser_test.ts, TypeScript, 355 lines
src/webgl/lerp.ts, TypeScript, 392 lines
src/webgl/lines.ts, TypeScript, 154 lines
src/webgl/offscreen.ts, TypeScript, 412 lines
src/webgl/quad.ts, TypeScript, 51 lines
src/webgl/rectangle_grid_buffer.spec.ts, TypeScript, 41 lines
src/webgl/rectangle_grid_buffer.ts, TypeScript, 80 lines
src/webgl/shader.ts, TypeScript, 687 lines
src/webgl/shader_control_reachability.ts, TypeScript, 99 lines
src/webgl/shader_lib.browser_test.ts, TypeScript, 206 lines
src/webgl/shader_lib.ts, TypeScript, 642 lines
src/webgl/shader_source_string_preprocessing.ts, TypeScript, 45 lines
src/webgl/shader_testing.browser_test.ts, TypeScript, 118 lines
src/webgl/shader_testing.ts, TypeScript, 375 lines
src/webgl/shader_ui_controls.browser_test.ts, TypeScript, 1,548 lines
src/webgl/shader_ui_controls.ts, TypeScript, 1,975 lines
src/webgl/spheres.ts, TypeScript, 140 lines
src/webgl/square_corners_buffer.ts, TypeScript, 109 lines
src/webgl/testing.ts, TypeScript, 36 lines
src/webgl/texture.ts, TypeScript, 151 lines
src/webgl/texture_access.browser_test.ts, TypeScript, 101 lines
src/webgl/texture_access.ts, TypeScript, 614 lines
src/webgl/trivial_shaders.ts, TypeScript, 95 lines
src/webgl/vertex_id.ts, TypeScript, 80 lines
src/widget/add_button.ts, TypeScript, 23 lines
src/widget/annotation_tool_status.ts, TypeScript, 150 lines
src/widget/associate_label.ts, TypeScript, 27 lines
src/widget/channel_dimensions_widget.ts, TypeScript, 258 lines
src/widget/checkbox_icon.ts, TypeScript, 59 lines
src/widget/close_button.ts, TypeScript, 23 lines
src/widget/color.ts, TypeScript, 68 lines
src/widget/coordinate_transform.ts, TypeScript, 1,208 lines
src/widget/copy_button.ts, TypeScript, 28 lines
src/widget/delete_button.ts, TypeScript, 26 lines
src/widget/dependent_view_widget.ts, TypeScript, 92 lines
src/widget/display_dimensions_widget.ts, TypeScript, 865 lines
src/widget/enum_widget.ts, TypeScript, 70 lines
src/widget/eye_button.ts, TypeScript, 27 lines
src/widget/filter_button.ts, TypeScript, 23 lines
src/widget/help_button.ts, TypeScript, 22 lines
src/widget/hidden_submit_button.ts, TypeScript, 35 lines
src/widget/icon.ts, TypeScript, 70 lines
src/widget/invlerp.ts, TypeScript, 936 lines
src/widget/invlerp_range_finder.ts, TypeScript, 249 lines
src/widget/layer_control.ts, TypeScript, 246 lines
src/widget/layer_control_channel_invlerp.ts, TypeScript, 106 lines
src/widget/layer_control_checkbox.ts, TypeScript, 37 lines
src/widget/layer_control_color.ts, TypeScript, 53 lines
src/widget/layer_control_enum.ts, TypeScript, 49 lines
src/widget/layer_control_property_invlerp.ts, TypeScript, 134 lines
src/widget/layer_control_range.ts, TypeScript, 53 lines
src/widget/layer_control_select.spec.ts, TypeScript, 79 lines
src/widget/layer_control_select.ts, TypeScript, 97 lines
src/widget/layer_reference.ts, TypeScript, 62 lines
src/widget/layer_type_indicator.ts, TypeScript, 39 lines
src/widget/linked_layer.ts, TypeScript, 129 lines
src/widget/maximize_button.ts, TypeScript, 23 lines
src/widget/move_to_button.ts, TypeScript, 22 lines
src/widget/multiline_autocomplete.ts, TypeScript, 893 lines
src/widget/number_input_widget.ts, TypeScript, 79 lines
src/widget/position_plot.ts, TypeScript, 410 lines
src/widget/position_widget.ts, TypeScript, 1,719 lines
src/widget/progress_listener.ts, TypeScript, 47 lines
src/widget/range.ts, TypeScript, 93 lines
src/widget/render_scale_widget.ts, TypeScript, 438 lines
src/widget/scale_bar.ts, TypeScript, 444 lines
src/widget/segmentation_color_mode.ts, TypeScript, 115 lines
src/widget/shader_code_widget.ts, TypeScript, 253 lines
src/widget/shader_controls.ts, TypeScript, 380 lines
src/widget/star_button.ts, TypeScript, 27 lines
src/widget/tab_view.ts, TypeScript, 433 lines
src/widget/text_icon_button.ts, TypeScript, 29 lines
src/widget/text_input.ts, TypeScript, 70 lines
src/widget/tooltip.ts, TypeScript, 47 lines
src/widget/transfer_function.browser_test.ts, TypeScript, 411 lines
src/widget/transfer_function.ts, TypeScript, 2,005 lines
src/widget/vec3_entry_widget.ts, TypeScript, 96 lines
src/widget/virtual_list.ts, TypeScript, 516 lines
src/worker_rpc.ts, TypeScript, 446 lines
src/worker_rpc_context.ts, TypeScript, 21 lines
testdata/codec/crackle/generate_crackle_examples.py, Python, 94 lines
testdata/codec/npy/generate_npy_examples.py, Python, 69 lines
testdata/datasource/n5/generate_n5.py, Python, 69 lines
testdata/datasource/precomputed/generate_precomputed.py, Python, 46 lines
testdata/datasource/zarr/ome_zarr/generate_ome_zarr.py, Python, 85 lines
testdata/datasource/zarr/zarr_v2/from_zarr-python/generate-v2.py, Python, 199 lines
testdata/datasource/zarr/zarr_v3/examples/generate_zarr_v3.py, Python, 31 lines
testdata/datasource/zarr/zarr_v3/from_zarrita/generate-v3.py, Python, 553 lines
testdata/kvstore/icechunk/dump_icechunk.py, Python, 47 lines
testdata/kvstore/icechunk/generate_icechunk.py, Python, 132 lines
testdata/kvstore/ocdbt/generate_ocdbt.py, Python, 77 lines
testdata/kvstore/zip/generate_zip.py, Python, 22 lines
testdata/kvstore/zip/generate_zip64.py, Python, 94 lines
tests/codec/crackle.spec.ts, TypeScript, 196 lines
tests/datasource/completion.spec.ts, TypeScript, 138 lines
tests/datasource/deepzoom.browser_test.ts, TypeScript, 58 lines
tests/datasource/metadata_snapshot_test_util.ts, TypeScript, 41 lines
tests/datasource/n5.browser_test.ts, TypeScript, 24 lines
tests/datasource/nifti.browser_test.ts, TypeScript, 26 lines
tests/datasource/precomputed.browser_test.ts, TypeScript, 21 lines
tests/datasource/suggest_name.spec.ts, TypeScript, 33 lines
tests/datasource/test_util.ts, TypeScript, 184 lines
tests/datasource/zarr.browser_test.ts, TypeScript, 36 lines
tests/example_project_test/build_client.ts, TypeScript, 31 lines
tests/example_project_test/build_package.ts, TypeScript, 29 lines
tests/example_project_test/capture_build_screenshot.ts, TypeScript, 37 lines
tests/example_project_test/capture_dev_server_screenshot.ts, TypeScript, 83 lines
tests/example_project_test/capture_screenshot.ts, TypeScript, 60 lines
tests/example_project_test/client_test_options.ts, TypeScript, 27 lines
tests/example_project_test/compare_screenshots.ts, TypeScript, 32 lines
tests/example_project_test/config.ts, TypeScript, 141 lines
tests/example_project_test/install_node_modules.ts, TypeScript, 31 lines
tests/example_project_test/reset_screenshot_server.ts, TypeScript, 22 lines
tests/example_project_test/screenshot_comparison_server.ts, TypeScript, 85 lines
tests/fixtures/clear_cookies.ts, TypeScript, 31 lines
tests/fixtures/datasource_provider.ts, TypeScript, 35 lines
tests/fixtures/fake_gcs_server.ts, TypeScript, 120 lines
tests/fixtures/fake_s3_server.ts, TypeScript, 152 lines
tests/fixtures/fixture.ts, TypeScript, 54 lines
tests/fixtures/gl_browser.ts, TypeScript, 26 lines
tests/fixtures/gl_node.ts, TypeScript, 27 lines
tests/fixtures/http_server.ts, TypeScript, 50 lines
tests/fixtures/msw_browser.ts, TypeScript, 21 lines
tests/fixtures/msw_node.ts, TypeScript, 18 lines
tests/fixtures/shared_kvstore_context.ts, TypeScript, 50 lines
tests/fixtures/status_message_observer.ts, TypeScript, 89 lines
tests/fixtures/temp_directory.ts, TypeScript, 34 lines
tests/kvstore/gcs.spec.ts, TypeScript, 47 lines
tests/kvstore/gzip.spec.ts, TypeScript, 36 lines
tests/kvstore/http.spec.ts, TypeScript, 47 lines
tests/kvstore/icechunk.spec.ts, TypeScript, 292 lines
tests/kvstore/ngauth.browser_test.ts, TypeScript, 142 lines
tests/kvstore/ocdbt.spec.ts, TypeScript, 1,772 lines
tests/kvstore/s3.browser_test.ts, TypeScript, 67 lines
tests/kvstore/s3.spec.ts, TypeScript, 110 lines
tests/kvstore/test_data.ts, TypeScript, 56 lines
tests/kvstore/test_util.ts, TypeScript, 227 lines
tests/kvstore/url.spec.ts, TypeScript, 205 lines
tests/kvstore/zip.spec.ts, TypeScript, 182 lines
tests/util/clear_cookies.ts, TypeScript, 27 lines
tests/util/msw_request_log.ts, TypeScript, 128 lines
typings/index.d.ts, TypeScript, 2 lines
typings/nifti-reader-js.d.ts, TypeScript, 341 lines
typings/raw.d.ts, TypeScript, 4 lines
vitest.workspace.ts, TypeScript, 130 lines
LICENSE, License, 202 lines
README.md, Text, 177 lines

At the source: github.com/google/neuroglancer

Code availability statement

The paper has a code availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

it points to the authors' code: google/ffn, google/neuroglancer, YuelongWu/feabas

Read it in the paper: doi.org/10.1038/s41467-026-72180-7.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

3 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
1,000 scripts, each with its path and the digest of its content;
no match between paragraphs and code yet;
neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Code and data availability statement

The paper has a code and data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

it points to the authors' code: google/ffn, google/neuroglancer, YuelongWu/feabas
it says that the data are available on request

Read it in the paper: doi.org/10.1038/s41467-026-72180-7.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 30 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 14 authors, 2 keywords, 6 MeSH terms, 2 funders, 25 references.

Cite

This paper

Lu, X., Wu, Y., Li, P. H., Fang, T., Schalek, R. L., Su, Y., Berger, D. R., Carter, J. D., Lynch, S., Schneider, D. J., Gupta, S., Jain, V., Janjic, N., & Lichtman, J. W. (2026). Probing molecular diversity and ultrastructure of brain cells with fluorescent aptamers. Nature communications, 17(1), 5795. https://doi.org/10.1038/s41467-026-72180-7

BibTeX

@article{lu2026probing, author = {Lu, Xiaotang and Wu, Yuelong and Li, Peter H and Fang, Tao and Schalek, Richard L and Su, Yaxin and Berger, Daniel R and Carter, Jeffery D and Lynch, Sean and Schneider, Daniel J and Gupta, Shashi and Jain, Viren and Janjic, Nebojsa and Lichtman, Jeff W}, title = {{Probing molecular diversity and ultrastructure of brain cells with fluorescent aptamers}}, journal = {Nature communications}, year = {2026}, month = apr, volume = {17}, number = {1}, pages = {5795}, publisher = {Nature Publishing Group}, issn = {2041-1723}, doi = {10.1038/s41467-026-72180-7}, url = {https://doi.org/10.1038/s41467-026-72180-7}, pmid = {42045230}, pmcid = {PMC13332243} }

RIS

TY - JOUR AU - Lu, Xiaotang AU - Wu, Yuelong AU - Li, Peter H AU - Fang, Tao AU - Schalek, Richard L AU - Su, Yaxin AU - Berger, Daniel R AU - Carter, Jeffery D AU - Lynch, Sean AU - Schneider, Daniel J AU - Gupta, Shashi AU - Jain, Viren AU - Janjic, Nebojsa AU - Lichtman, Jeff W TI - Probing molecular diversity and ultrastructure of brain cells with fluorescent aptamers T2 - Nature communications J2 - Nat Commun PY - 2026 DA - 2026/04/27 VL - 17 IS - 1 SP - 5795 SN - 2041-1723 PB - Nature Publishing Group DO - 10.1038/s41467-026-72180-7 UR - https://doi.org/10.1038/s41467-026-72180-7 LA - en ER -

CSL-JSON

{ "id": "10.1038/s41467-026-72180-7", "type": "article-journal", "title": "Probing molecular diversity and ultrastructure of brain cells with fluorescent aptamers", "container-title": "Nature communications", "author": [ { "family": "Lu", "given": "Xiaotang" }, { "family": "Wu", "given": "Yuelong" }, { "family": "Li", "given": "Peter H" }, { "family": "Fang", "given": "Tao" }, { "family": "Schalek", "given": "Richard L" }, { "family": "Su", "given": "Yaxin" }, { "family": "Berger", "given": "Daniel R" }, { "family": "Carter", "given": "Jeffery D" }, { "family": "Lynch", "given": "Sean" }, { "family": "Schneider", "given": "Daniel J" }, { "family": "Gupta", "given": "Shashi" }, { "family": "Jain", "given": "Viren" }, { "family": "Janjic", "given": "Nebojsa" }, { "family": "Lichtman", "given": "Jeff W" } ], "container-title-short": "Nat Commun", "volume": "17", "issue": "1", "page": "5795", "DOI": "10.1038/s41467-026-72180-7", "PMID": "42045230", "PMCID": "PMC13332243", "ISSN": "2041-1723", "publisher": "Nature Publishing Group", "URL": "https://doi.org/10.1038/s41467-026-72180-7", "language": "en", "issued": { "date-parts": [ [ 2026, 4, 27 ] ] } }

The tracing map gets a citation of its own once an author has validated it and it has a DOI.

Contribute

The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Request its removal

To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).

Discussion, reproductions, activity

Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.

Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.

Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.

Probing molecular diversity and ultrastructure of brain cells with fluorescent aptamers.

Code ↔ Paper

Paper

The authors' code

Overview

Abstract

Repositories

YuelongWu/feabas

google/ffn

google/neuroglancer

Code availability statement

Tracing map

Data

Code and data availability statement

Versions

Version 1, 30 September 2026: the first record

Cite

This paper

Similar papers

Contribute

Claim this paper

Correct its record

Validate its tracing map

Add the badge to its README

Request its removal

Discussion, reproductions, activity