Human cortex organizes dynamic co-fluctuations along the sensorimotor-association axis.
The 17 matches · 5 of them tie a paragraph to a whole file, not to given lines: weak matches, whose lines are not tinted
- [1] § Results › Amplitude-dependent spatial configuration of co-fluctuation scores along the SA axis ↔ scripts/testing_phase_random.m, lines 82–144 · score 0.79 · 50–55 %, 75–80 %, SA axis, shifts, maps, bins
- [2] § Results › Amplitude-dependent spatial configuration of co-fluctuation scores along the SA axis ↔ scripts/testing_individual_analysis.m, lines 128–172 · score 0.79 · 50–55 %, 75–80 %, SA axis, maps, score, bins
- [3] § Methods › Delineating the changes of co-fluctuation scores across global amplitudes ↔ scripts/fitGAMs_CS_Schaefer200x17.R, lines 1–70 · score 0.75 · tSNR, smooth term, co fluctuation amplitude, regional co fluctuation, co fluctuation score, maximal
- [4] § Methods › Delineating the changes of co-fluctuation scores across global amplitudes ↔ scripts/GAMs_fixed.R, lines 22–151 · score 0.74 · GAM smooth term, reduced model, smooth function, nested, curvature, ANOVA
- [5] § Methods › MRI acquisition ↔ H3/DREAM/D_core/fsio/ssbloch.m, the whole file · a weak match · score 0.73 · echo planar imaging, flip angle, coil, sequence, resolution, TE
- [6] § Methods › Delineating the changes of co-fluctuation scores across global amplitudes ↔ scripts/GAMs_mixed.R, lines 17–128 · score 0.72 · GAM smooth term, reduced model, smooth function, nested, ANOVA, derivatives
- [7] § Methods › Delineating the changes of co-fluctuation scores across global amplitudes ↔ scripts/GAMs_fixed.R, lines 22–151 · score 0.68 · tSNR, smooth term, AIC, REML, maximal, sex
- [8] § Results › Developmental refinement of opposing co-fluctuation patterns along the SA axis ↔ scripts/testing_hcpd_cs.m, lines 139–193 · score 0.66 · 90–100 %, SA axis, 60 %, 40 %, age, scores
- [9] § Methods › MRI data preprocessing ↔ H3/DREAM/D_core/fsio/ssbloch.m, the whole file · a weak match · score 0.65 · high resolution T1, magnetic field, CSF
- [10] § Results › Sensitivity and replication analyses ↔ scripts/fit_GAMs_fixed_glasser360_3T.R, lines 1–59 · score 0.61 · head motion, global signal, tSNR, co fluctuation scores, covariate, GS
- [11] § Results › Sensitivity and replication analyses ↔ scripts/fit_GAMs_fixed_schaefer400x17_3T.R, lines 1–59 · score 0.61 · head motion, global signal, tSNR, co fluctuation scores, covariate, GS
- [12] § Methods › MRI data preprocessing ↔ H1/ccs_04_funcAROMA.sh, the whole file · a weak match · score 0.57 · ICA AROMA, fMRI, nuisance, motion, CCS, smoothing
- [13] § Methods › MRI data preprocessing ↔ samplesScripts/ccs_funcproc_template.sh, lines 47–129 · score 0.56 · band pass filtered, detrended, preprocessed, surface, regressed, space
- [14] § Methods › MRI data preprocessing ↔ H1/ccs_05_funcpreproc_cortex.sh, lines 54–128 · score 0.54 · band pass filtered, detrended, cortex, surface, linearly, MRI
- [15] § Results ↔ scripts/ets_rss_physio_phase_mapping.m, the whole file · a weak match · score 0.53 · heart rate, global RSS, unwrapped, root, frame, signals
- [16] § Results ↔ bins_hcp_co_fluc_analysis.m, lines 36–102 · score 0.52 · Static FC, global RSS, timeseries, HCP, co fluctuation, Connectome
- [17] § Methods › MRI data preprocessing ↔ scripts/ets_rss_physio_phase_mapping.m, the whole file · a weak match · score 0.51 · heart rate, physiological, HRV, interval, windows, MRI
Paper
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The authors' code
R · 228 lines · 11 KB · no license · 2 matches
- library(dplyr)
- library(R.matlab)
- library(ggsegGlasser)
- library(ggsegSchaefer)
- library(ggseg)
- library(ggplot2)
- library(ggseg3d)
- library(cifti)
- library(stringr)
- library(factoextra)
- library(matrixStats)
- library(scales)
- library(Hmisc)
- library(tidyr)
- library(cocor)
- library(mgcv)
- library(gratia)
- library(tidyverse)
- library(numDeriv)
- #### FIT GAM SMOOTH ####
- ## Function to fit a GAM (measure ~ s(smooth_var, k = knots, fx = set_fx) + covariates)).
- ## measure:cs
- ## region: V1...
- ## smooth_var: bin_label
- ## covariates: sex + age + tSNR + mean_fd + mean_gs + mean_hr + mean_br
- ## knots: 3
- ## set_fx = TRUE
- ## stats_only = FALSE
- gam.fit.smooth <- function(region, smooth_var, covariates, knots, set_fx = FALSE, stats_only = FALSE){
- # compatible settings.
- parcel <- region
- #Fit the gam
- modelformula <- as.formula(sprintf("%s ~ s(%s, k = %s, fx = %s) + %s", region, smooth_var, knots, set_fx, covariates))
- gam.model <- gam(modelformula, method = "REML", data = gam.data)
- gam.results <- summary(gam.model)
- summary(gam.model)
- p.pv <- gam.results$p.pv
- p.t <- gam.results$p.t
- gam_check_k <- k.check(gam.model)
- aic_values <- AIC(gam.model)
- # browser()
- #GAM derivatives
- #Get derivatives of the smooth function using finite differences
- derv <- derivatives(gam.model, term = sprintf('s(%s)',smooth_var), interval = "simultaneous", unconditional = F) #derivative at 200 indices of smooth_var with a simultaneous CI
- #Identify derivative significance window(s)
- derv <- derv %>% #add "sig" column (TRUE/FALSE) to derv
- mutate(sig = !(0 > lower & 0 < upper)) #derivative is sig if the lower CI is not < 0 while the upper CI is > 0 (i.e., when the CI does not include 0)
- derv$sig_deriv = derv$derivative*derv$sig #add "sig_deriv derivatives column where non-significant derivatives are set to 0
- # second derivatives
- derv2l <- derivatives(gam.model, term = sprintf('s(%s)',smooth_var), order = 2)
- mean.derivative_2l <- mean(derv2l$derivative)
- # first derivatives
- derv1l <- derivatives(gam.model, term = sprintf('s(%s)',smooth_var), order = 1)
- # curvature.
- d1 <- derv1l$derivative
- d2 <- derv2l$derivative
- curvature <- abs(d2) / (1 + d1^2)^(3/2)
- mean.curvature <- mean(curvature)
- # print(curvature)
- # print(length(curvature))
- # print(mean(curvature))
- #GAM statistics
- #F value for the smooth term and GAM-based significance of the smooth term
- gam.smooth.F <- gam.results$s.table[3]
- gam.smooth.pvalue <- gam.results$s.table[4]
- #Calculate the magnitude and significance of the smooth term effect by comparing full and reduced models
- ##Compare a full model GAM (with the smooth term) to a nested, reduced model (with covariates only)
- nullmodel <- as.formula(sprintf("%s ~ %s", region, covariates)) #no smooth term
- gam.nullmodel <- gam(nullmodel, method = "REML", data = gam.data)
- gam.nullmodel.results <- summary(gam.nullmodel)
- ##Full versus reduced model anova p-value
- anova.smooth.pvalue <- anova.gam(gam.nullmodel,gam.model,test='Chisq')$`Pr(>Chi)`[2]
- ##Full versus reduced model direction-dependent partial R squared
- ### effect size
- sse.model <- sum((gam.model$y - gam.model$fitted.values)^2)
- sse.nullmodel <- sum((gam.nullmodel$y - gam.nullmodel$fitted.values)^2)
- partialRsq <- (sse.nullmodel - sse.model)/sse.nullmodel
- ### effect direction
- mean.derivative <- mean(derv$derivative)
- if(mean.derivative < 0){ #if the average derivative is less than 0, make the effect size estimate negative
- partialRsq <- partialRsq*-1}
- #Derivative-based temporal characteristics
- #Age of developmental change onset
- if(sum(derv$sig) > 0){ #if derivative is significant at at least 1 age
- change.onset <- min(derv$data[derv$sig==T])
- } #find first age in the smooth where derivative is significant
- if(sum(derv$sig) == 0){ #if gam derivative is never significant
- change.onset <- NA
- } #assign NA
- #Age of maximal developmental change
- if(sum(derv$sig) > 0){
- derv$abs_sig_deriv = round(abs(derv$sig_deriv),5) #absolute value significant derivatives
- maxval <- max(derv$abs_sig_deriv) #find the largest derivative
- window.peak.change <- derv$data[derv$abs_sig_deriv == maxval] #identify the age(s) at which the derivative is greatest in absolute magnitude
- peak.change <- mean(window.peak.change)} #identify the age of peak developmental change
- if(sum(derv$sig) == 0){
- peak.change <- NA
- }
- #Age of decrease onset
- if(sum(derv$sig) > 0){
- decreasing.range <- derv$data[derv$sig_deriv < 0] #identify all ages with a significant negative derivative (i.e., smooth_var indices where y is decreasing)
- if(length(decreasing.range) > 0)
- decrease.onset <- min(decreasing.range) #find youngest age with a significant negative derivative
- if(length(decreasing.range) == 0)
- decrease.onset <- NA
- }
- if(sum(derv$sig) == 0){
- decrease.onset <- NA
- }
- #Age of increase offset
- if(sum(derv$sig) > 0){
- increasing.range <- derv$data[derv$sig_deriv > 0] #identify all ages with a significant positive derivative (i.e., smooth_var indices where y is increasing)
- if(length(increasing.range) > 0)
- increase.offset <- max(increasing.range) #find oldest age with a significant positive derivative
- if(length(increasing.range) == 0)
- increase.offset <- NA
- }
- if(sum(derv$sig) == 0){
- increase.offset <- NA
- }
- #Age of maturation
- if(sum(derv$sig) > 0){
- change.offset <- max(derv$data[derv$sig==T])
- } #find last age in the smooth where derivative is significant
- if(sum(derv$sig) == 0){
- change.offset <- NA
- }
- full.results <- cbind(parcel, gam.smooth.F, gam.smooth.pvalue, partialRsq, anova.smooth.pvalue,
- change.onset, peak.change, decrease.onset, increase.offset, change.offset,
- mean.curvature, mean.derivative_2l)
- stats.results <- cbind(parcel, gam.smooth.F, gam.smooth.pvalue, partialRsq, anova.smooth.pvalue)
- if(stats_only == TRUE)
- return(list(results=stats.results, p.pv=p.pv, p.t=p.t, gam_check_k=gam_check_k, aic_values=aic_values))
- if(stats_only == FALSE)
- # return(full.results)
- return(list(results=full.results, p.pv=p.pv, p.t=p.t, gam_check_k=gam_check_k, aic_values=aic_values))
- }
- #### PREDICT GAM SMOOTH FITTED VALUES ####
- ## Function to predict fitted values of a measure based on a fitted GAM smooth
- ## (measure ~ s(smooth_var, k = knots, fx = set_fx) + covariates)) and a prediction df.
- gam.smooth.predict <- function(region, smooth_var, covariates, knots, set_fx = FALSE, increments){
- parcel <- region
- region <- str_replace(region, "-", ".")
- modelformula <- as.formula(sprintf("%s ~ s(%s, k = %s, fx = %s) + %s", region, smooth_var, knots, set_fx, covariates))
- gam.model <- gam(modelformula, method = "REML", data = gam.data)
- gam.results <- summary(gam.model)
- #Extract gam input data
- df <- gam.model$model #extract the data used to build the gam, i.e., a df of y + predictor values
- #Create a prediction data frame
- np <- increments #number of predictions to make; predict at np increments of smooth_var
- thisPred <- data.frame(init = rep(0,np)) #initiate a prediction df
- theseVars <- attr(gam.model$terms,"term.labels") #gam model predictors (smooth_var + covariates)
- varClasses <- attr(gam.model$terms,"dataClasses") #classes of the model predictors and y measure
- thisResp <- as.character(gam.model$terms[[2]]) #the measure to predict
- for (v in c(1:length(theseVars))) { #fill the prediction df with data for predictions. These data will be used to predict the output measure (y) at np increments of the smooth_var, holding other model terms constant
- thisVar <- theseVars[[v]]
- thisClass <- varClasses[thisVar]
- if (thisVar == smooth_var) {
- thisPred[,smooth_var] = seq(min(df[,smooth_var],na.rm = T),max(df[,smooth_var],na.rm = T), length.out = np) #generate a range of np data points, from minimum of smooth term to maximum of smooth term
- } else {
- switch (thisClass,
- "numeric" = {thisPred[,thisVar] = median(df[,thisVar])}, #make predictions based on median value
- "factor" = {thisPred[,thisVar] = levels(df[,thisVar])[[1]]}, #make predictions based on first level of factor
- "ordered" = {thisPred[,thisVar] = levels(df[,thisVar])[[1]]} #make predictions based on first level of ordinal variable
- )
- }
- }
- pred <- thisPred %>% select(-init)
- #Generate predictions based on the gam model and predication data frame
- predicted.smooth <- fitted_values(object = gam.model, data = pred)
- predicted.smooth <- predicted.smooth %>% select(all_of(smooth_var), fitted, se, lower, upper)
- smooth.fit <- list(parcel, predicted.smooth)
- return(smooth.fit)
- }
- #### CALCULATE SMOOTH ESTIMATES ####
- ## Function to estimate the zero-averaged gam smooth function
- gam.estimate.smooth <- function(region, smooth_var, covariates, knots, set_fx = FALSE, increments){
- # compatible settings.
- parcel <- region
- modelformula <- as.formula(sprintf("%s ~ s(%s, k = %s, fx = %s) + %s", region, smooth_var, knots, set_fx, covariates))
- gam.model <- gam(modelformula, method = "REML", data = gam.data)
- gam.results <- summary(gam.model)
- #Extract gam input data
- df <- gam.model$model #extract the data used to build the gam, i.e., a df of y + predictor values
- #Create a prediction data frame
- np <- increments #number of predictions to make; predict at np increments of smooth_var
- thisPred <- data.frame(init = rep(0,np)) #initiate a prediction df
- theseVars <- attr(gam.model$terms,"term.labels") #gam model predictors (smooth_var + covariates)
- varClasses <- attr(gam.model$terms,"dataClasses") #classes of the model predictors and y measure
- thisResp <- as.character(gam.model$terms[[2]]) #the measure to predict
- for (v in c(1:length(theseVars))) { #fill the prediction df with data for predictions. These data will be used to predict the output measure (y) at np increments of the smooth_var, holding other model terms constant
- thisVar <- theseVars[[v]]
- thisClass <- varClasses[thisVar]
- if (thisVar == smooth_var) {
- thisPred[,smooth_var] = seq(min(df[,smooth_var],na.rm = T),max(df[,smooth_var],na.rm = T), length.out = np) #generate a range of np data points, from minimum of smooth term to maximum of smooth term
- } else {
- switch (thisClass,
- "numeric" = {thisPred[,thisVar] = median(df[,thisVar])}, #make predictions based on median value
- "factor" = {thisPred[,thisVar] = levels(df[,thisVar])[[1]]}, #make predictions based on first level of factor
- "ordered" = {thisPred[,thisVar] = levels(df[,thisVar])[[1]]} #make predictions based on first level of ordinal variable
- )
- }
- }
- pred <- thisPred %>% select(-init)
- #Estimate the smooth trajectory
- estimated.smooth <- smooth_estimates(object = gam.model, data = pred)
- estimated.smooth <- estimated.smooth %>% select(smooth_var, est)
- return(estimated.smooth)
- }
GAMs_fixed.R at commit ed94e54, no license · at the source
Overview
- School of Artificial Intelligence, Beijing University of Posts and Telecommunications,Beijing, China
- Department of Physics, Centre for Nonlinear Studies and Beijing-Hong Kong-Singapore Joint Centre for Nonlinear and Complex Systems (Hong Kong), Institute of Computational and Theoretical Studies, Hong Kong Baptist University,Kowloon Tong, Hong Kong
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University,Beijing, China
- National Basic Science Data Center, Beijing, China
- Developmental Population Neuroscience Research Center, IDG/McGovern Institute for Brain Research, Beijing Normal University,Beijing, China
- Department of Psychological and Brain Sciences, Indiana University,Bloomington, IN USA
- Center for the Integrative Developmental Neuroscience, Child Mind Institute,New York, NY USA
- Kunming Institute of Zoology, Chinese Academy of Sciences,Kunming, China
Abstract
The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.
Repositories
Its files are read in the Code ↔ Paper reader above, with 17 matches between paragraphs and lines of code.
zuoxinian/CCS
9a1fc10bb560f5a2aa802c7f6fcc80c5a44366ee, 12 September 2024Availability: 1 check, the latest on 27 September 2026: the link answers
- 27 September 2026: the link answers
732 files
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ccs_01_anatcheck_render. , Shell, 117 linessh - H1/
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AmygdalaGo-BOLT/ , Python, 163 linesmodel/ dim2/ dual_attention_utils.py - H3/
AmygdalaGo-BOLT/ , Python, 1,688 linesmodel/ dim2/ swin_unet.py - H3/
AmygdalaGo-BOLT/ , Python, 94 linesmodel/ dim2/ trans_layers.py - H3/
AmygdalaGo-BOLT/ , Python, 1,474 linesmodel/ dim2/ transunet.py - H3/
AmygdalaGo-BOLT/ , Python, 43 linesmodel/ dim2/ unet.py - H3/
AmygdalaGo-BOLT/ , Python, 61 linesmodel/ dim2/ unet_utils.py - H3/
AmygdalaGo-BOLT/ , Python, 79 linesmodel/ dim2/ unetpp.py - H3/
AmygdalaGo-BOLT/ , Python, 23 linesmodel/ dim2/ utils.py - H3/
AmygdalaGo-BOLT/ , Python, 63 linesmodel/ dim2/ utnetv2.py - H3/
AmygdalaGo-BOLT/ , Python, 355 linesmodel/ dim2/ utnetv2_utils.py - H3/
AmygdalaGo-BOLT/ , Python, 47 linesmodel/ dim3/ .ipynb_checkpoints/ attention_unet-checkpoin t.py - H3/
AmygdalaGo-BOLT/ , Python, 66 linesmodel/ dim3/ .ipynb_checkpoints/ attention_unet_utils-che ckpoint.py - H3/
AmygdalaGo-BOLT/ , Python, 282 linesmodel/ dim3/ .ipynb_checkpoints/ conv_layers-checkpoint.p y - H3/
AmygdalaGo-BOLT/ , Python, 127 linesmodel/ dim3/ .ipynb_checkpoints/ trans_layers-checkpoint. py - H3/
AmygdalaGo-BOLT/ , Python, 67 linesmodel/ dim3/ .ipynb_checkpoints/ unet-checkpoint.py - H3/
AmygdalaGo-BOLT/ , Python, 78 linesmodel/ dim3/ .ipynb_checkpoints/ unet_utils-checkpoint.py - H3/
AmygdalaGo-BOLT/ , Python, 90 linesmodel/ dim3/ .ipynb_checkpoints/ unetpp-checkpoint.py - H3/
AmygdalaGo-BOLT/ , Python, 237 linesmodel/ dim3/ .ipynb_checkpoints/ unetr-checkpoint.py - H3/
AmygdalaGo-BOLT/ , Python, 29 linesmodel/ dim3/ .ipynb_checkpoints/ utils-checkpoint.py - H3/
AmygdalaGo-BOLT/ , Python, 77 linesmodel/ dim3/ .ipynb_checkpoints/ utnetv2-checkpoint.py - H3/
AmygdalaGo-BOLT/ , Python, 341 linesmodel/ dim3/ .ipynb_checkpoints/ utnetv2_utils-checkpoint .py - H3/
AmygdalaGo-BOLT/ , Python, 182 linesmodel/ dim3/ .ipynb_checkpoints/ vnet-checkpoint.py - H3/
AmygdalaGo-BOLT/ , Python, 7 linesmodel/ dim3/ __init__.py - H3/
AmygdalaGo-BOLT/ , Python, 47 linesmodel/ dim3/ attention_unet.py - H3/
AmygdalaGo-BOLT/ , Python, 66 linesmodel/ dim3/ attention_unet_utils.py - H3/
AmygdalaGo-BOLT/ , Python, 282 linesmodel/ dim3/ conv_layers.py - H3/
AmygdalaGo-BOLT/ , Python, 127 linesmodel/ dim3/ trans_layers.py - H3/
AmygdalaGo-BOLT/ , Python, 74 linesmodel/ dim3/ u2.py - H3/
AmygdalaGo-BOLT/ , Python, 67 linesmodel/ dim3/ unet.py - H3/
AmygdalaGo-BOLT/ , Python, 78 linesmodel/ dim3/ unet_utils.py - H3/
AmygdalaGo-BOLT/ , Python, 90 linesmodel/ dim3/ unetpp.py - H3/
AmygdalaGo-BOLT/ , Python, 237 linesmodel/ dim3/ unetr.py - H3/
AmygdalaGo-BOLT/ , Python, 29 linesmodel/ dim3/ utils.py - H3/
AmygdalaGo-BOLT/ , Python, 77 linesmodel/ dim3/ utnetv2.py - H3/
AmygdalaGo-BOLT/ , Python, 341 linesmodel/ dim3/ utnetv2_utils.py - H3/
AmygdalaGo-BOLT/ , Python, 182 linesmodel/ dim3/ vnet.py - H3/
AmygdalaGo-BOLT/ , Python, 170 linesmodel/ dim3/ vtunet.py - H3/
AmygdalaGo-BOLT/ , Python, 2,196 linesmodel/ dim3/ vtunet_utils.py - H3/
AmygdalaGo-BOLT/ , Python, 116 linesmodel/ utils.py - H3/
AmygdalaGo-BOLT/ , Python, 21 linestools/ 427_label.py - H3/
AmygdalaGo-BOLT/ , Python, 1 linetraining/ __init__.py - H3/
AmygdalaGo-BOLT/ , Python, 207 linestraining/ augmentation.py - H3/
AmygdalaGo-BOLT/ , Python, 1 linetraining/ dataset/ __init__.py - H3/
AmygdalaGo-BOLT/ , Python, 1 linetraining/ dataset/ dim2/ __init__.py - H3/
AmygdalaGo-BOLT/ , Python, 158 linestraining/ dataset/ dim2/ dataset_acdc.py - H3/
AmygdalaGo-BOLT/ , Python, 152 linestraining/ dataset/ dim3/ dataset_acdc.py - H3/
AmygdalaGo-BOLT/ , Python, 18 linestraining/ dataset/ utils.py - H3/
AmygdalaGo-BOLT/ , Python, 228 linestraining/ losses.py - H3/
AmygdalaGo-BOLT/ , Python, 83 linestraining/ utils.py - H3/
AmygdalaGo-BOLT/ , Python, 59 linestraining/ validation.py - H3/
DREAM/ , MATLAB, 94 linesDREAM1_repANOVA.m - H3/
DREAM/ , MATLAB, 92 linesDREAM_FreqCalc_EEG.m - H3/
DREAM/ , MATLAB, 42 linesDREAM_FreqCalc_FD.m - H3/
DREAM/ , MATLAB, 122 linesDREAM_FreqCalc_IMG.m - H3/
DREAM/ , MATLAB, 133 linesDREAM_FreqCalc_IMGd.m - H3/
DREAM/ , MATLAB, 130 linesDREAM_FreqCalc_IMGdp.m - H3/
DREAM/ , MATLAB, 423 linesD_core/ AFD_pop_loadbv.m - H3/
DREAM/ , MATLAB, 76 linesD_core/ CBIG_bandpass_matrix.m - H3/
DREAM/ , MATLAB, 123 linesD_core/ LFCD_IPN_computeMC.m - H3/
DREAM/ , MATLAB, 77 linesD_core/ bva-io1.5.13/ eegplugin_bva_io.m - H3/
DREAM/ , MATLAB, 71 linesD_core/ bva-io1.5.13/ loadbvef.m - H3/
DREAM/ , MATLAB, 48 linesD_core/ bva-io1.5.13/ parsebvmrk.m - H3/
DREAM/ , MATLAB, 423 linesD_core/ bva-io1.5.13/ pop_loadbv.m - H3/
DREAM/ , MATLAB, 140 linesD_core/ bva-io1.5.13/ pop_loadbva.m - H3/
DREAM/ , MATLAB, 204 linesD_core/ bva-io1.5.13/ pop_writebva.m - H3/
DREAM/ , MATLAB, 93 linesD_core/ bva-io1.5.13/ readbvconf.m - H3/
DREAM/ , MATLAB, 60 linesD_core/ ccs_core_lfobands.m - H3/
DREAM/ , MATLAB, 66 linesD_core/ fsio/ ComputeGeodesicProjectio n.m - H3/
DREAM/ , MATLAB, 52 linesD_core/ fsio/ MRIeuler2Mdc.m - H3/
DREAM/ , MATLAB, 113 linesD_core/ fsio/ MRIextractImage.m - H3/
DREAM/ , MATLAB, 143 linesD_core/ fsio/ MRIfspec.m - H3/
DREAM/ , MATLAB, 65 linesD_core/ fsio/ MRIisBHDR.m - H3/
DREAM/ , MATLAB, 62 linesD_core/ fsio/ MRIisMGH.m - H3/
DREAM/ , MATLAB, 45 linesD_core/ fsio/ MRImdc2euler.m - H3/
DREAM/ , MATLAB, 271 linesD_core/ fsio/ MRIread.m - H3/
DREAM/ , MATLAB, 56 linesD_core/ fsio/ MRIseg2labelxyz.m - H3/
DREAM/ , MATLAB, 88 linesD_core/ fsio/ MRIsegReg.m - H3/
DREAM/ , MATLAB, 103 linesD_core/ fsio/ MRIvol2vol.m - H3/
DREAM/ , MATLAB, 50 linesD_core/ fsio/ MRIvote.m - H3/
DREAM/ , MATLAB, 198 linesD_core/ fsio/ MRIwrite.m - H3/
DREAM/ , MATLAB, 34 linesD_core/ fsio/ MakeGeodesicOuterROI.m - H3/
DREAM/ , MATLAB, 49 linesD_core/ fsio/ PropagateGeodesic.m - H3/
DREAM/ , MATLAB, 121 linesD_core/ fsio/ ReadSiemensPhysio.m - H3/
DREAM/ , MATLAB, 11 linesD_core/ fsio/ SearchProjectionOnPial.m - H3/
DREAM/ , MATLAB, 76 linesD_core/ fsio/ angles2rotmat.m - H3/
DREAM/ , MATLAB, 47 linesD_core/ fsio/ barsegstats.m - H3/
DREAM/ , MATLAB, 92 linesD_core/ fsio/ bmm_mcvect.m - H3/
DREAM/ , MATLAB, 75 linesD_core/ fsio/ bmm_mcvhist.m - H3/
DREAM/ , MATLAB, 54 linesD_core/ fsio/ bmmcost.m - H3/
DREAM/ , MATLAB, 80 linesD_core/ fsio/ bmmroc.m - H3/
DREAM/ , MATLAB, 276 linesD_core/ fsio/ cc_cut_afd.m - H3/
DREAM/ , MATLAB, 284 linesD_core/ fsio/ cc_cut_dir_afd.m - H3/
DREAM/ , MATLAB, 47 linesD_core/ fsio/ cc_cut_table.m - H3/
DREAM/ , MATLAB, 42 linesD_core/ fsio/ combine_labels.m - H3/
DREAM/ , MATLAB, 148 linesD_core/ fsio/ compute_lgi.m - H3/
DREAM/ , MATLAB, 55 linesD_core/ fsio/ convert_fieldsign.m - H3/
DREAM/ , MATLAB, 395 linesD_core/ fsio/ convert_unwarp_resample. m - H3/
DREAM/ , MATLAB, 249 linesD_core/ fsio/ cortical_labeling_afd_tx t.m - H3/
DREAM/ , MATLAB, 256 linesD_core/ fsio/ cortical_labeling_dir_af d_txt.m - H3/
DREAM/ , MATLAB, 67 linesD_core/ fsio/ cortical_labeling_table. m - H3/
DREAM/ , MATLAB, 19 linesD_core/ fsio/ createMeshFacesOfVertex. m - H3/
DREAM/ , MATLAB, 51 linesD_core/ fsio/ dice_labels.m - H3/
DREAM/ , MATLAB, 134 linesD_core/ fsio/ dijk.m - H3/
DREAM/ , MATLAB, 19 linesD_core/ fsio/ dtifa.m - H3/
DREAM/ , MATLAB, 66 linesD_core/ fsio/ dtimatrix.m - H3/
DREAM/ , MATLAB, 49 linesD_core/ fsio/ find_corresponding_cente r_FSformat.m - H3/
DREAM/ , MATLAB, 84 linesD_core/ fsio/ fisher_twoclass.m - H3/
DREAM/ , MATLAB, 30 linesD_core/ fsio/ fread3.m - H3/
DREAM/ , MATLAB, 13 linesD_core/ fsio/ freesurfer_fread3.m - H3/
DREAM/ , MATLAB, 141 linesD_core/ fsio/ freesurfer_read_surf.m - H3/
DREAM/ , MATLAB, 33 linesD_core/ fsio/ fwrite3.m - H3/
DREAM/ , MATLAB, 25 linesD_core/ fsio/ getFaceArea.m - H3/
DREAM/ , MATLAB, 10 linesD_core/ fsio/ getFacesArea.m - H3/
DREAM/ , MATLAB, 20 linesD_core/ fsio/ getMeshArea.m - H3/
DREAM/ , MATLAB, 12 linesD_core/ fsio/ getOrthogonalVector.m - H3/
DREAM/ , MATLAB, 18 linesD_core/ fsio/ getVerticesAndFacesInSph ere.m - H3/
DREAM/ , MATLAB, 8 linesD_core/ fsio/ isInGeodesicROI.m - H3/
DREAM/ , MATLAB, 9 linesD_core/ fsio/ isVertexInRadius.m - H3/
DREAM/ , MATLAB, 52 linesD_core/ fsio/ isdicomfile.m - H3/
DREAM/ , MATLAB, 40 linesD_core/ fsio/ juelichmat2mat.m - H3/
DREAM/ , MATLAB, 134 linesD_core/ fsio/ labelic.m - H3/
DREAM/ , MATLAB, 169 linesD_core/ fsio/ llbmm.m - H3/
DREAM/ , MATLAB, 136 linesD_core/ fsio/ load_analyze.m - H3/
DREAM/ , MATLAB, 162 linesD_core/ fsio/ load_analyze_hdr.m - H3/
DREAM/ , MATLAB, 135 linesD_core/ fsio/ load_cor.m - H3/
DREAM/ , MATLAB, 101 linesD_core/ fsio/ load_csd.m - H3/
DREAM/ , MATLAB, 193 linesD_core/ fsio/ load_dicom_fl.m - H3/
DREAM/ , MATLAB, 126 linesD_core/ fsio/ load_dicom_series.m - H3/
DREAM/ , MATLAB, 120 linesD_core/ fsio/ load_gca.m - H3/
DREAM/ , MATLAB, 77 linesD_core/ fsio/ load_ima.m - H3/
DREAM/ , MATLAB, 272 linesD_core/ fsio/ load_mgh.m - H3/
DREAM/ , MATLAB, 122 linesD_core/ fsio/ load_mgh2.m - H3/
DREAM/ , MATLAB, 173 linesD_core/ fsio/ load_nifti.m - H3/
DREAM/ , MATLAB, 216 linesD_core/ fsio/ load_nifti_hdr.m - H3/
DREAM/ , MATLAB, 119 linesD_core/ fsio/ load_segstats.m - H3/
DREAM/ , MATLAB, 58 linesD_core/ fsio/ lta_read.m - H3/
DREAM/ , MATLAB, 83 linesD_core/ fsio/ make_outer_surface.m - H3/
DREAM/ , MATLAB, 113 linesD_core/ fsio/ make_roi_paths.m - H3/
DREAM/ , MATLAB, 51 linesD_core/ fsio/ mesh_adjacency.m - H3/
DREAM/ , MATLAB, 42 linesD_core/ fsio/ mesh_vertex_nearest.m - H3/
DREAM/ , MATLAB, 96 linesD_core/ fsio/ mksubfov.m - H3/
DREAM/ , MATLAB, 55 linesD_core/ fsio/ mri_cdf2p.m - H3/
DREAM/ , MATLAB, 63 linesD_core/ fsio/ mri_kurtosis.m - H3/
DREAM/ , MATLAB, 126 linesD_core/ fsio/ mri_surfrft_jlbr.m - H3/
DREAM/ , MATLAB, 41 linesD_core/ fsio/ mri_zcdf.m - H3/
DREAM/ , MATLAB, 159 linesD_core/ fsio/ mris_display.m - H3/
DREAM/ , MATLAB, 133 linesD_core/ fsio/ peakfinder.m - H3/
DREAM/ , MATLAB, 146 linesD_core/ fsio/ pons_cut_afd.m - H3/
DREAM/ , MATLAB, 160 linesD_core/ fsio/ pons_cut_dir_afd.m - H3/
DREAM/ , MATLAB, 38 linesD_core/ fsio/ pons_cut_table.m - H3/
DREAM/ , MATLAB, 82 linesD_core/ fsio/ pred2path.m - H3/
DREAM/ , MATLAB, 66 linesD_core/ fsio/ randb.m - H3/
DREAM/ , MATLAB, 28 linesD_core/ fsio/ read_ROIlabel.m - H3/
DREAM/ , MATLAB, 37 linesD_core/ fsio/ read_all.m - H3/
DREAM/ , MATLAB, 183 linesD_core/ fsio/ read_annotation.m - H3/
DREAM/ , MATLAB, 47 linesD_core/ fsio/ read_asc.m - H3/
DREAM/ , MATLAB, 31 linesD_core/ fsio/ read_ascii_curv.m - H3/
DREAM/ , MATLAB, 37 linesD_core/ fsio/ read_cor.m - H3/
DREAM/ , MATLAB, 76 linesD_core/ fsio/ read_csf_patch.m - H3/
DREAM/ , MATLAB, 57 linesD_core/ fsio/ read_curv.m - H3/
DREAM/ , MATLAB, 115 linesD_core/ fsio/ read_eccen_patch.m - H3/
DREAM/ , MATLAB, 106 linesD_core/ fsio/ read_freq_patch.m - H3/
DREAM/ , MATLAB, 76 linesD_core/ fsio/ read_fscolorlut.m - H3/
DREAM/ , MATLAB, 41 linesD_core/ fsio/ read_genesis_image.m - H3/
DREAM/ , MATLAB, 73 linesD_core/ fsio/ read_label.m - H3/
DREAM/ , MATLAB, 37 linesD_core/ fsio/ read_label_old.m - H3/
DREAM/ , MATLAB, 53 linesD_core/ fsio/ read_moviebyu.m - H3/
DREAM/ , MATLAB, 13 linesD_core/ fsio/ read_normals.m - H3/
DREAM/ , MATLAB, 113 linesD_core/ fsio/ read_patch.m - H3/
DREAM/ , MATLAB, 435 linesD_core/ fsio/ read_siemens_header.m - H3/
DREAM/ , MATLAB, 40 linesD_core/ fsio/ read_siemens_image.m - H3/
DREAM/ , MATLAB, 87 linesD_core/ fsio/ read_smooth_eccen.m - H3/
DREAM/ , MATLAB, 76 linesD_core/ fsio/ read_surf.m - H3/
DREAM/ , MATLAB, 36 linesD_core/ fsio/ read_type.m - H3/
DREAM/ , MATLAB, 203 linesD_core/ fsio/ read_vf.m - H3/
DREAM/ , MATLAB, 64 linesD_core/ fsio/ read_wfile.m - H3/
DREAM/ , MATLAB, 59 linesD_core/ fsio/ readrec.m - H3/
DREAM/ , MATLAB, 58 linesD_core/ fsio/ redo_lgi.m - H3/
DREAM/ , MATLAB, 11 linesD_core/ fsio/ remove_spaces.m - H3/
DREAM/ , MATLAB, 63 linesD_core/ fsio/ reorganize_verticeslist. m - H3/
DREAM/ , MATLAB, 246 linesD_core/ fsio/ ribbon_afd.m - H3/
DREAM/ , MATLAB, 263 linesD_core/ fsio/ ribbon_dir_afd.m - H3/
DREAM/ , MATLAB, 39 linesD_core/ fsio/ ribbon_table.m - H3/
DREAM/ , MATLAB, 11 linesD_core/ fsio/ rotmat.m - H3/
DREAM/ , MATLAB, 72 linesD_core/ fsio/ rotmat2angles.m - H3/
DREAM/ , MATLAB, 106 linesD_core/ fsio/ sampleSize.m - H3/
DREAM/ , MATLAB, 100 linesD_core/ fsio/ save_cor.m - H3/
DREAM/ , MATLAB, 122 linesD_core/ fsio/ save_mgh.m - H3/
DREAM/ , MATLAB, 113 linesD_core/ fsio/ save_mgh2.m - H3/
DREAM/ , MATLAB, 193 linesD_core/ fsio/ save_nifti.m - H3/
DREAM/ , MATLAB, 104 lines, 2 matchesD_core/ fsio/ ssbloch.m - H3/
DREAM/ , MATLAB, 91 linesD_core/ fsio/ ssblochgrad.m - H3/
DREAM/ , MATLAB, 58 linesD_core/ fsio/ stringunique.m - H3/
DREAM/ , MATLAB, 35 linesD_core/ fsio/ strlen.m - H3/
DREAM/ , MATLAB, 162 linesD_core/ fsio/ subcortical_labeling_afd .m - H3/
DREAM/ , MATLAB, 191 linesD_core/ fsio/ subcortical_labeling_dir _afd.m - H3/
DREAM/ , MATLAB, 53 linesD_core/ fsio/ subcortical_labeling_tab le.m - H3/
DREAM/ , MATLAB, 165 linesD_core/ fsio/ surf_registration_afd.m - H3/
DREAM/ , MATLAB, 154 linesD_core/ fsio/ surf_registration_stats. m - H3/
DREAM/ , MATLAB, 45 linesD_core/ fsio/ surf_registration_table. m - H3/
DREAM/ , MATLAB, 155 linesD_core/ fsio/ talairaching_afd.m - H3/
DREAM/ , MATLAB, 196 linesD_core/ fsio/ talairaching_dir_afd.m - H3/
DREAM/ , MATLAB, 96 linesD_core/ fsio/ talairaching_stats.m - H3/
DREAM/ , MATLAB, 59 linesD_core/ fsio/ talairaching_table.m - H3/
DREAM/ , MATLAB, 22 linesD_core/ fsio/ transVertexToNormalAxisB ase.m - H3/
DREAM/ , MATLAB, 42 linesD_core/ fsio/ unwarp_init_globals.m - H3/
DREAM/ , MATLAB, 348 linesD_core/ fsio/ unwarp_resample.m - H3/
DREAM/ , MATLAB, 127 linesD_core/ fsio/ unwarp_scanners_table.m - H3/
DREAM/ , MATLAB, 112 linesD_core/ fsio/ vox2rasToQform.m - H3/
DREAM/ , MATLAB, 49 linesD_core/ fsio/ vox2ras_0to1.m - H3/
DREAM/ , MATLAB, 51 linesD_core/ fsio/ vox2ras_1to0.m - H3/
DREAM/ , MATLAB, 274 linesD_core/ fsio/ vox2ras_dfmeas.m - H3/
DREAM/ , MATLAB, 118 linesD_core/ fsio/ vox2ras_ksolve.m - H3/
DREAM/ , MATLAB, 225 linesD_core/ fsio/ vox2ras_rsolve.m - H3/
DREAM/ , MATLAB, 144 linesD_core/ fsio/ vox2ras_rsolveAA.m - H3/
DREAM/ , MATLAB, 53 linesD_core/ fsio/ vox2ras_tkreg.m - H3/
DREAM/ , MATLAB, 148 linesD_core/ fsio/ wm_seg_afd.m - H3/
DREAM/ , MATLAB, 167 linesD_core/ fsio/ wm_seg_dir_afd.m - H3/
DREAM/ , MATLAB, 37 linesD_core/ fsio/ wm_seg_table.m - H3/
DREAM/ , MATLAB, 104 linesD_core/ fsio/ write_analyze_hdr.m - H3/
DREAM/ , MATLAB, 150 linesD_core/ fsio/ write_annotation.m - H3/
DREAM/ , MATLAB, 34 linesD_core/ fsio/ write_ascii_curv.m - H3/
DREAM/ , MATLAB, 42 linesD_core/ fsio/ write_curv.m - H3/
DREAM/ , MATLAB, 91 linesD_core/ fsio/ write_label.m - H3/
DREAM/ , MATLAB, 66 linesD_core/ fsio/ write_lgi.m - H3/
DREAM/ , MATLAB, 76 linesD_core/ fsio/ write_path.m - H3/
DREAM/ , MATLAB, 66 linesD_core/ fsio/ write_wfile.m - H3/
DREAM/ , MATLAB, 52 linesD_core/ fsio/ xfm_read.m - H3/
DREAM/ , MATLAB, 237 linesD_core/ popfunc/ eeg_addnewevents.m - H3/
DREAM/ , MATLAB, 247 linesD_core/ popfunc/ eeg_amplitudearea.m - H3/
DREAM/ , MATLAB, 70 linesD_core/ popfunc/ eeg_chaninds.m - H3/
DREAM/ , MATLAB, 68 linesD_core/ popfunc/ eeg_chantype.m - H3/
DREAM/ , MATLAB, 651 linesD_core/ popfunc/ eeg_context.m - H3/
DREAM/ , MATLAB, 122 linesD_core/ popfunc/ eeg_countepochs.m - H3/
DREAM/ , MATLAB, 129 linesD_core/ popfunc/ eeg_decodechan.m - H3/
DREAM/ , MATLAB, 81 linesD_core/ popfunc/ eeg_dipselect.m - H3/
DREAM/ , MATLAB, 231 linesD_core/ popfunc/ eeg_eegrej.m - H3/
DREAM/ , MATLAB, 93 linesD_core/ popfunc/ eeg_emptyset.m - H3/
DREAM/ , MATLAB, 51 linesD_core/ popfunc/ eeg_epoch2continuous.m - H3/
DREAM/ , MATLAB, 208 linesD_core/ popfunc/ eeg_epochformat.m - H3/
DREAM/ , MATLAB, 73 linesD_core/ popfunc/ eeg_eventformat.m - H3/
DREAM/ , MATLAB, 160 linesD_core/ popfunc/ eeg_eventhist.m - H3/
DREAM/ , MATLAB, 154 linesD_core/ popfunc/ eeg_eventtable.m - H3/
DREAM/ , MATLAB, 182 linesD_core/ popfunc/ eeg_eventtypes.m - H3/
DREAM/ , MATLAB, 315 linesD_core/ popfunc/ eeg_getepochevent.m - H3/
DREAM/ , MATLAB, 50 linesD_core/ popfunc/ eeg_getica.m - H3/
DREAM/ , MATLAB, 136 linesD_core/ popfunc/ eeg_insertbound.m - H3/
DREAM/ , MATLAB, 178 linesD_core/ popfunc/ eeg_insertboundold.m - H3/
DREAM/ , MATLAB, 351 linesD_core/ popfunc/ eeg_interp.m - H3/
DREAM/ , MATLAB, 158 linesD_core/ popfunc/ eeg_laplac.m - H3/
DREAM/ , MATLAB, 105 linesD_core/ popfunc/ eeg_lat2point.m - H3/
DREAM/ , MATLAB, 82 linesD_core/ popfunc/ eeg_latencyur.m - H3/
DREAM/ , MATLAB, 134 linesD_core/ popfunc/ eeg_matchchans.m - H3/
DREAM/ , MATLAB, 68 linesD_core/ popfunc/ eeg_mergechan.m - H3/
DREAM/ , MATLAB, 127 linesD_core/ popfunc/ eeg_mergelocs.m - H3/
DREAM/ , MATLAB, 156 linesD_core/ popfunc/ eeg_mergelocs_diffstruct .m - H3/
DREAM/ , MATLAB, 118 linesD_core/ popfunc/ eeg_multieegplot.m - H3/
DREAM/ , MATLAB, 121 linesD_core/ popfunc/ eeg_oldica.m - H3/
DREAM/ , MATLAB, 91 linesD_core/ popfunc/ eeg_point2lat.m - H3/
DREAM/ , MATLAB, 262 linesD_core/ popfunc/ eeg_pv.m - H3/
DREAM/ , MATLAB, 277 linesD_core/ popfunc/ eeg_pvaf.m - H3/
DREAM/ , MATLAB, 183 linesD_core/ popfunc/ eeg_rejmacro.m - H3/
DREAM/ , MATLAB, 126 linesD_core/ popfunc/ eeg_rejsuperpose.m - H3/
DREAM/ , MATLAB, 83 linesD_core/ popfunc/ eeg_timeinterp.m - H3/
DREAM/ , MATLAB, 385 linesD_core/ popfunc/ eeg_topoplot.m - H3/
DREAM/ , MATLAB, 60 linesD_core/ popfunc/ eeg_urlatency.m - H3/
DREAM/ , MATLAB, 64 linesD_core/ popfunc/ getchanlist.m - H3/
DREAM/ , MATLAB, 375 linesD_core/ popfunc/ importevent.m - H3/
DREAM/ , MATLAB, 251 linesD_core/ popfunc/ pop_autorej.m - H3/
DREAM/ , MATLAB, 73 linesD_core/ popfunc/ pop_averef.m - H3/
DREAM/ , MATLAB, 264 linesD_core/ popfunc/ pop_biosig.m - H3/
DREAM/ , MATLAB, 270 linesD_core/ popfunc/ pop_biosig16.m - H3/
DREAM/ , MATLAB, 271 linesD_core/ popfunc/ pop_biosig16ying.m - H3/
DREAM/ , MATLAB, 103 linesD_core/ popfunc/ pop_chancenter.m - H3/
DREAM/ , MATLAB, 316 linesD_core/ popfunc/ pop_chancoresp.m - H3/
DREAM/ , MATLAB, 959 linesD_core/ popfunc/ pop_chanedit.m - H3/
DREAM/ , MATLAB, 299 linesD_core/ popfunc/ pop_chanevent.m - H3/
DREAM/ , MATLAB, 145 linesD_core/ popfunc/ pop_chansel.m - H3/
DREAM/ , MATLAB, 162 linesD_core/ popfunc/ pop_comments.m - H3/
DREAM/ , MATLAB, 77 linesD_core/ popfunc/ pop_compareerps.m - H3/
DREAM/ , MATLAB, 544 linesD_core/ popfunc/ pop_comperp.m - H3/
DREAM/ , MATLAB, 73 linesD_core/ popfunc/ pop_copyset.m - H3/
DREAM/ , MATLAB, 219 linesD_core/ popfunc/ pop_crossf.m - H3/
DREAM/ , MATLAB, 445 linesD_core/ popfunc/ pop_editeventfield.m - H3/
DREAM/ , MATLAB, 656 linesD_core/ popfunc/ pop_editeventvals.m - H3/
DREAM/ , MATLAB, 500 linesD_core/ popfunc/ pop_editset.m - H3/
DREAM/ , MATLAB, 243 linesD_core/ popfunc/ pop_eegfilt.m - H3/
DREAM/ , MATLAB, 195 linesD_core/ popfunc/ pop_eegplot.m - H3/
DREAM/ , MATLAB, 243 linesD_core/ popfunc/ pop_eegthresh.m - H3/
DREAM/ , MATLAB, 196 linesD_core/ popfunc/ pop_envtopo.m - H3/
DREAM/ , MATLAB, 403 linesD_core/ popfunc/ pop_epoch.m - H3/
DREAM/ , MATLAB, 697 linesD_core/ popfunc/ pop_erpimage.m - H3/
DREAM/ , MATLAB, 139 linesD_core/ popfunc/ pop_eventstat.m - H3/
DREAM/ , MATLAB, 69 linesD_core/ popfunc/ pop_expevents.m - H3/
DREAM/ , MATLAB, 70 linesD_core/ popfunc/ pop_expica.m - H3/
DREAM/ , MATLAB, 208 linesD_core/ popfunc/ pop_export.m - H3/
DREAM/ , MATLAB, 180 linesD_core/ popfunc/ pop_fileio.m - H3/
DREAM/ , MATLAB, 76 linesD_core/ popfunc/ pop_fileiodir.m - H3/
DREAM/ , MATLAB, 505 linesD_core/ popfunc/ pop_headplot.m - H3/
DREAM/ , MATLAB, 286 linesD_core/ popfunc/ pop_icathresh.m - H3/
DREAM/ , MATLAB, 289 linesD_core/ popfunc/ pop_importdata.m - H3/
DREAM/ , MATLAB, 147 linesD_core/ popfunc/ pop_importegimat.m - H3/
DREAM/ , MATLAB, 421 linesD_core/ popfunc/ pop_importepoch.m - H3/
DREAM/ , MATLAB, 226 linesD_core/ popfunc/ pop_importerplab.m - H3/
DREAM/ , MATLAB, 75 linesD_core/ popfunc/ pop_importev2.m - H3/
DREAM/ , MATLAB, 229 linesD_core/ popfunc/ pop_importevent.m - H3/
DREAM/ , MATLAB, 189 linesD_core/ popfunc/ pop_importpres.m - H3/
DREAM/ , MATLAB, 158 linesD_core/ popfunc/ pop_interp.m - H3/
DREAM/ , MATLAB, 273 linesD_core/ popfunc/ pop_jointprob.m - H3/
DREAM/ , MATLAB, 357 linesD_core/ popfunc/ pop_loadbci.m - H3/
DREAM/ , MATLAB, 234 linesD_core/ popfunc/ pop_loadcnt.m - H3/
DREAM/ , MATLAB, 105 linesD_core/ popfunc/ pop_loaddat.m - H3/
DREAM/ , MATLAB, 145 linesD_core/ popfunc/ pop_loadeeg.m - H3/
DREAM/ , MATLAB, 373 linesD_core/ popfunc/ pop_loadset.m - H3/
DREAM/ , MATLAB, 372 linesD_core/ popfunc/ pop_mergeset.m - H3/
DREAM/ , MATLAB, 226 linesD_core/ popfunc/ pop_newcrossf.m - H3/
DREAM/ , MATLAB, 570 linesD_core/ popfunc/ pop_newset.m - H3/
DREAM/ , MATLAB, 340 linesD_core/ popfunc/ pop_newtimef.m - H3/
DREAM/ , MATLAB, 200 linesD_core/ popfunc/ pop_plotdata.m - H3/
DREAM/ , MATLAB, 122 linesD_core/ popfunc/ pop_plottopo.m - H3/
DREAM/ , MATLAB, 403 linesD_core/ popfunc/ pop_prop.m - H3/
DREAM/ , MATLAB, 211 linesD_core/ popfunc/ pop_readegi.m - H3/
DREAM/ , MATLAB, 218 linesD_core/ popfunc/ pop_readlocs.m - H3/
DREAM/ , MATLAB, 114 linesD_core/ popfunc/ pop_readsegegi.m - H3/
DREAM/ , MATLAB, 229 linesD_core/ popfunc/ pop_rejchan.m - H3/
DREAM/ , MATLAB, 242 linesD_core/ popfunc/ pop_rejchanspec.m - H3/
DREAM/ , MATLAB, 313 linesD_core/ popfunc/ pop_rejcont.m - H3/
DREAM/ , MATLAB, 90 linesD_core/ popfunc/ pop_rejepoch.m - H3/
DREAM/ , MATLAB, 269 linesD_core/ popfunc/ pop_rejkurt.m - H3/
DREAM/ , MATLAB, 312 linesD_core/ popfunc/ pop_rejspec.m - H3/
DREAM/ , MATLAB, 215 linesD_core/ popfunc/ pop_rejtrend.m - H3/
DREAM/ , MATLAB, 291 linesD_core/ popfunc/ pop_reref.m - H3/
DREAM/ , MATLAB, 342 linesD_core/ popfunc/ pop_resample.m - H3/
DREAM/ , MATLAB, 179 linesD_core/ popfunc/ pop_rmbase.m - H3/
DREAM/ , MATLAB, 183 linesD_core/ popfunc/ pop_rmdat.m - H3/
DREAM/ , MATLAB, 538 linesD_core/ popfunc/ pop_runica.m - H3/
DREAM/ , MATLAB, 44 linesD_core/ popfunc/ pop_runscript.m - H3/
DREAM/ , MATLAB, 76 linesD_core/ popfunc/ pop_saveh.m - H3/
DREAM/ , MATLAB, 329 linesD_core/ popfunc/ pop_saveset.m - H3/
DREAM/ , MATLAB, 669 linesD_core/ popfunc/ pop_select.m - H3/
DREAM/ , MATLAB, 194 linesD_core/ popfunc/ pop_selectcomps.m - H3/
DREAM/ , MATLAB, 569 linesD_core/ popfunc/ pop_selectevent.m - H3/
DREAM/ , MATLAB, 146 linesD_core/ popfunc/ pop_signalstat.m - H3/
DREAM/ , MATLAB, 98 linesD_core/ popfunc/ pop_snapread.m - H3/
DREAM/ , MATLAB, 334 linesD_core/ popfunc/ pop_spectopo.m - H3/
DREAM/ , MATLAB, 163 linesD_core/ popfunc/ pop_subcomp.m - H3/
DREAM/ , MATLAB, 223 linesD_core/ popfunc/ pop_timef.m - H3/
DREAM/ , MATLAB, 101 linesD_core/ popfunc/ pop_timtopo.m - H3/
DREAM/ , MATLAB, 389 linesD_core/ popfunc/ pop_topoplot.m - H3/
DREAM/ , MATLAB, 88 linesD_core/ popfunc/ pop_writeeeg.m - H3/
DREAM/ , MATLAB, 180 linesD_core/ popfunc/ pop_writelocs.m - H3/
GrowthCharts/ , Shell, 23 linesCodes/ DT1_Template_Constructio n.sh - H3/
GrowthCharts/ , Shell, 22 linesCodes/ DT2_Individual_Segmentat ion.sh - H3/
GrowthCharts/ , Shell, 34 linesCodes/ DT3_ASTs_Registration_To _ST.sh - H3/
GrowthCharts/ , Shell, 36 linesCodes/ DT3_Individual_Registrai on_To_Template.sh - H3/
GrowthCharts/ , Shell, 29 linesCodes/ DT4_Indi_to_Standard.sh - H3/
GrowthCharts/ , Shell, 29 linesCodes/ DT4_Standard_to_Indi.sh - H3/
GrowthCharts/ , Shell, 23 linesCodes/ DT5_extract_volume.sh - H3/
ccs_07_grp_4dmaps.sh , Shell, 70 lines - H3/
ccs_07_grp_SurfaceMask.m , MATLAB, 59 lines - H3/
ccs_07_grp_boldmask.sh , Shell, 77 lines - H3/
ccs_07_grp_meanbold.sh , Shell, 78 lines - H3/
ccs_07_grp_meanstruc.sh , Shell, 93 lines - H3/
ccs_07_grp_surfcluster.s , Shell, 5 linesh - H3/
gradient/ , Python, 80 linesD1_FCmapZ_Computation_Ve ntralAttention_Subgroups .py - H3/
gradient/ , Python, 90 linesD1_GroupGradientComputat ion_DroppingOffNetwork.p y - H3/
gradient/ , Python, 58 linesD2_GroupGradientComputat ion_VentralAttention_Sub groups.py - H3/
gradient/ , MATLAB, 220 linesFigure1_Degree_Centralit y_Caulation& Surface_Rendering.m - H3/
gradient/ , MATLAB, 95 linesFigure2_Gradient_Map_Sur face_Rendering.m - H3/
gradient/ , MATLAB, 126 linesFigure3_ClusterDroppingo ff_Permutation_model.m - H3/
gradient/ , MATLAB, 118 linesFigure3_Random_Rotated_M ask_Generation.m - H3/
nmm/ , MATLAB, 10 linesccs_core_double4cell.m - H3/
nmm/ , MATLAB, 21 linesccs_ttest2_bayesadj.m - H3/
nmm/ , MATLAB, 68 linesnormmodel_00_getdata4R.m - H3/
nmm/ , MATLAB, 188 linesnormmodel_01_plotcharts. m - H3/
nmm/ , MATLAB, 188 linesnormmodel_01_plotchartsV 2.m - H3/
nmm/ , MATLAB, 91 linesnormmodel_02_ttest2.m - H3/
nmm/ , MATLAB, 96 linesnormmodel_03_udprs.m - H3/
nmm/ , R, 27 linestemplate_centiles.R - H3/
nmm/ , Shell, 20 linestemplate_gamlss.sh - H3/
reliability/ , MATLAB, 89 linesIPN_icc.m - H3/
reliability/ , MATLAB, 84 linesm_fitlme_icc.m - H3/
vistool/ , MATLAB, 116 linesccs_SurfStatView.m - H3/
vistool/ , Python, 253 linesccs_auto_montage_pic.py - H3/
vistool/ , MATLAB, 93 linesccs_extractcolormaps.m - H3/
vistool/ , Shell, 8 linesccs_hemiFS_lh_split.sh - H3/
vistool/ , Shell, 8 linesccs_hemiFS_rh_split.sh - H3/
vistool/ , MATLAB, 146 linesccs_hemiSurfStatView.m - H3/
vistool/ , MATLAB, 61 linesccs_mkcolormap.m - H3/
vistool/ , MATLAB, 131 linesccs_mri_surfrft_jlbr.m - H3/
vistool/ , Shell, 2 linesccs_surf_montage.sh - H3/
vistool/ , Shell, 10 linesccs_surf_split.sh - H3/
vistool/ , MATLAB, 111 linesrenderSurface.m - H3/
vistool/ , MATLAB, 3 linessurfstat/ @random/ char.m - H3/
vistool/ , MATLAB, 17 linessurfstat/ @random/ display.m - H3/
vistool/ , MATLAB, 3 linessurfstat/ @random/ double.m - H3/
vistool/ , MATLAB, 45 linessurfstat/ @random/ image.m - H3/
vistool/ , MATLAB, 2 linessurfstat/ @random/ isempty.m - H3/
vistool/ , MATLAB, 25 linessurfstat/ @random/ minus.m - H3/
vistool/ , MATLAB, 6 linessurfstat/ @random/ mpower.m - H3/
vistool/ , MATLAB, 73 linessurfstat/ @random/ mtimes.m - H3/
vistool/ , MATLAB, 25 linessurfstat/ @random/ plus.m - H3/
vistool/ , MATLAB, 136 linessurfstat/ @random/ random.m - H3/
vistool/ , MATLAB, 5 linessurfstat/ @random/ size.m - H3/
vistool/ , MATLAB, 2 linessurfstat/ @random/ subsref.m - H3/
vistool/ , MATLAB, 2 linessurfstat/ @term/ char.m - H3/
vistool/ , MATLAB, 14 linessurfstat/ @term/ display.m - H3/
vistool/ , MATLAB, 2 linessurfstat/ @term/ double.m - H3/
vistool/ , MATLAB, 26 linessurfstat/ @term/ image.m - H3/
vistool/ , MATLAB, 2 linessurfstat/ @term/ isempty.m - H3/
vistool/ , MATLAB, 28 linessurfstat/ @term/ minus.m - H3/
vistool/ , MATLAB, 8 linessurfstat/ @term/ mpower.m - H3/
vistool/ , MATLAB, 45 linessurfstat/ @term/ mtimes.m - H3/
vistool/ , MATLAB, 32 linessurfstat/ @term/ plus.m - H3/
vistool/ , MATLAB, 6 linessurfstat/ @term/ size.m - H3/
vistool/ , MATLAB, 10 linessurfstat/ @term/ subsref.m - H3/
vistool/ , MATLAB, 109 linessurfstat/ @term/ term.m - H3/
vistool/ , MATLAB, 3 linessurfstat/ I.m - H3/
vistool/ , MATLAB, 44 linessurfstat/ SurfStatAvSurf.m - H3/
vistool/ , MATLAB, 58 linessurfstat/ SurfStatAvVol.m - H3/
vistool/ , MATLAB, 36 linessurfstat/ SurfStatColLim.m - H3/
vistool/ , MATLAB, 29 linessurfstat/ SurfStatColormap.m - H3/
vistool/ , MATLAB, 48 linessurfstat/ SurfStatCoord2Ind.m - H3/
vistool/ , MATLAB, 17 linessurfstat/ SurfStatDataCursor.m - H3/
vistool/ , MATLAB, 28 linessurfstat/ SurfStatDataCursorP.m - H3/
vistool/ , MATLAB, 26 linessurfstat/ SurfStatDataCursorQ.m - H3/
vistool/ , MATLAB, 70 linessurfstat/ SurfStatDelete.m - H3/
vistool/ , MATLAB, 78 linessurfstat/ SurfStatEdg.m - H3/
vistool/ , MATLAB, 128 linessurfstat/ SurfStatF.m - H3/
vistool/ , MATLAB, 39 linessurfstat/ SurfStatInd2Coord.m - H3/
vistool/ , MATLAB, 74 linessurfstat/ SurfStatInflate.m - H3/
vistool/ , MATLAB, 346 linessurfstat/ SurfStatLinMod.m - H3/
vistool/ , MATLAB, 37 linessurfstat/ SurfStatListDir.m - H3/
vistool/ , MATLAB, 23 linessurfstat/ SurfStatMaskCut.m - H3/
vistool/ , MATLAB, 82 linessurfstat/ SurfStatNorm.m - H3/
vistool/ , MATLAB, 107 linessurfstat/ SurfStatP.m - H3/
vistool/ , MATLAB, 166 linessurfstat/ SurfStatPCA.m - H3/
vistool/ , MATLAB, 147 linessurfstat/ SurfStatPeakClus.m - H3/
vistool/ , MATLAB, 141 linessurfstat/ SurfStatPlot.m - H3/
vistool/ , MATLAB, 66 linessurfstat/ SurfStatQ.m - H3/
vistool/ , MATLAB, 44 linessurfstat/ SurfStatROI.m - H3/
vistool/ , MATLAB, 39 linessurfstat/ SurfStatROILabel.m - H3/
vistool/ , MATLAB, 113 linessurfstat/ SurfStatReadData.m - H3/
vistool/ , MATLAB, 57 linessurfstat/ SurfStatReadData1.m - H3/
vistool/ , MATLAB, 133 linessurfstat/ SurfStatReadSurf.m - H3/
vistool/ , MATLAB, 172 linessurfstat/ SurfStatReadSurf1.m - H3/
vistool/ , MATLAB, 190 linessurfstat/ SurfStatReadVol.m - H3/
vistool/ , MATLAB, 663 linessurfstat/ SurfStatReadVol1.m - H3/
vistool/ , MATLAB, 442 linessurfstat/ SurfStatResels.m - H3/
vistool/ , MATLAB, 85 linessurfstat/ SurfStatSmooth.m - H3/
vistool/ , MATLAB, 35 linessurfstat/ SurfStatStand.m - H3/
vistool/ , MATLAB, 85 linessurfstat/ SurfStatSurf2Vol.m - H3/
vistool/ , MATLAB, 160 linessurfstat/ SurfStatT.m - H3/
vistool/ , MATLAB, 128 linessurfstat/ SurfStatView.m - H3/
vistool/ , MATLAB, 309 linessurfstat/ SurfStatView1.m - H3/
vistool/ , MATLAB, 157 linessurfstat/ SurfStatViewData.m - H3/
vistool/ , MATLAB, 159 linessurfstat/ SurfStatViewDataFlat.m - H3/
vistool/ , MATLAB, 91 linessurfstat/ SurfStatViews.m - H3/
vistool/ , MATLAB, 59 linessurfstat/ SurfStatVol2Surf.m - H3/
vistool/ , MATLAB, 41 linessurfstat/ SurfStatWriteData.m - H3/
vistool/ , MATLAB, 81 linessurfstat/ SurfStatWriteSurf.m - H3/
vistool/ , MATLAB, 96 linessurfstat/ SurfStatWriteSurf1.m - H3/
vistool/ , MATLAB, 44 linessurfstat/ SurfStatWriteVol.m - H3/
vistool/ , MATLAB, 756 linessurfstat/ SurfStatWriteVol1.m - H3/
vistool/ , MATLAB, 20 linessurfstat/ fac2var.m - H3/
vistool/ , MATLAB, 60 linessurfstat/ gl.m - H3/
vistool/ , MATLAB, 71 linessurfstat/ redmod.m - H3/
vistool/ , MATLAB, 41 linessurfstat/ spectral.m - H3/
vistool/ , MATLAB, 769 linessurfstat/ stat_threshold.m - H3/
vistool/ , MATLAB, 33 linessurfstat/ var2fac.m - H3/
vistool/ , MATLAB, 160 linestestCT_lifespan.m - H3/
vistool/ , MATLAB, 276 linesviridis.m - core/
IPN_FDR.m , MATLAB, 22 lines - core/
IPN_FisherZtest.m , MATLAB, 15 lines - core/
IPN_calLCAM.m , MATLAB, 76 lines - core/
IPN_calLCAMw.m , MATLAB, 75 lines - core/
IPN_ccc.m , MATLAB, 15 lines - core/
IPN_cell2mat.m , MATLAB, 14 lines - core/
IPN_centBetweenness.m , MATLAB, 26 lines - core/
IPN_centBetweenness_old. , MATLAB, 22 linesm - core/
IPN_centCloseness.m , MATLAB, 21 lines - core/
IPN_centCloseness_old.m , MATLAB, 10 lines - core/
IPN_centCommunicability. , MATLAB, 28 linesm - core/
IPN_centDegree.m , MATLAB, 19 lines - core/
IPN_centEigenvector.m , MATLAB, 26 lines - core/
IPN_centNSubgraph.m , MATLAB, 57 lines - core/
IPN_centPagerank.m , MATLAB, 64 lines - core/
IPN_centSubgraph.m , MATLAB, 70 lines - core/
IPN_compR2Z.m , MATLAB, 13 lines - core/
IPN_computeRegErr.m , MATLAB, 30 lines - core/
IPN_cspy.m , MATLAB, 105 lines - core/
IPN_demean.m , MATLAB, 6 lines - core/
IPN_doSingleSubject_regi , MATLAB, 98 linesonCENT_aal.m - core/
IPN_doSingleSubject_regi , MATLAB, 100 linesonCENT_cameron.m - core/
IPN_doSingleSubject_regi , MATLAB, 94 linesonCENT_dosenbach2010.m - core/
IPN_doSingleSubject_regi , MATLAB, 96 linesonCENT_hoa25.m - core/
IPN_doSingleSubject_voxe , MATLAB, 122 lineslCENT.m - core/
IPN_doSingleSubject_voxe , MATLAB, 32 lineslGraph.m - core/
IPN_doSingleSubject_voxe , MATLAB, 67 lineslNSubgraph.m - core/
IPN_etaSquare.m , MATLAB, 14 lines - core/
IPN_falH.m , MATLAB, 82 lines - core/
IPN_falH_old.m , MATLAB, 21 lines - core/
IPN_fastCorr.m , MATLAB, 26 lines - core/
IPN_getsexInfo.m , MATLAB, 15 lines - core/
IPN_gretna_R2b.m , MATLAB, 112 lines - core/
IPN_icc.m , MATLAB, 89 lines - core/
IPN_kendallW.m , MATLAB, 27 lines - core/
IPN_kendallWmat.m , MATLAB, 17 lines - core/
IPN_parcunit_hoa25_save. , MATLAB, 15 linesm - core/
IPN_pval2corr.m , MATLAB, 31 lines - core/
IPN_rms.m , MATLAB, 3 lines - core/
IPN_ssd.m , MATLAB, 16 lines - core/
IPN_statT2Z.m , MATLAB, 6 lines - core/
IPN_subCell.m , MATLAB, 7 lines - core/
IPN_voxel_writetoCSV.m , MATLAB, 49 lines - core/
IPN_voxel_writetoGEXF.m , MATLAB, 71 lines - core/
IPN_voxel_writetoPAIRS.m , MATLAB, 21 lines - core/
IPN_write4LinkComm.m , MATLAB, 41 lines - core/
IPN_writetoGEXF.m , MATLAB, 73 lines - core/
LFCD_IPN_computeMC.m , MATLAB, 123 lines - core/
LFCD_alff.m , MATLAB, 65 lines - core/
LFCD_alffMatrix.m , MATLAB, 33 lines - core/
LFCD_alff_test.m , MATLAB, 62 lines - core/
LFCD_corr_covar.m , MATLAB, 21 lines - core/
LFCD_doGroupSurfMask.m , MATLAB, 31 lines - core/
LFCD_matchstrCell.m , MATLAB, 10 lines - core/
LFCD_metricQC.m , MATLAB, 53 lines - core/
LFCD_spm_read_vols.m , MATLAB, 30 lines - core/
LFCD_spm_write_vols.m , MATLAB, 34 lines - core/
LFCD_writetoGEXF4DMN.m , MATLAB, 127 lines - core/
LFCD_writetoGEXF4gRAICAR , MATLAB, 104 lines.m - core/
ccs_ReHo.m , MATLAB, 18 lines - core/
ccs_checkGeometry_surfac , MATLAB, 41 linese.m - core/
ccs_circos_normalize.m , MATLAB, 9 lines - core/
ccs_concatCell.m , MATLAB, 12 lines - core/
ccs_core_buildyeo2011.m , MATLAB, 73 lines - core/
ccs_core_buildyeo2017.m , MATLAB, 126 lines - core/
ccs_core_bwvgraph.m , MATLAB, 1,195 lines - core/
ccs_core_calLCAM.m , MATLAB, 71 lines - core/
ccs_core_curvfit_agepoly , MATLAB, 27 lines123.m - core/
ccs_core_distdpdtLCAM.m , MATLAB, 96 lines - core/
ccs_core_dualreg.m , MATLAB, 51 lines - core/
ccs_core_fastCoRR.m , MATLAB, 26 lines - core/
ccs_core_gparcmetric.m , MATLAB, 52 lines - core/
ccs_core_graphnbtw.m , MATLAB, 40 lines - core/
ccs_core_graphnbtw2.m , MATLAB, 42 lines - core/
ccs_core_lfobands.m , MATLAB, 60 lines - core/
ccs_core_map3dReHo.sh , Shell, 40 lines - core/
ccs_core_polyagecurvfit. , MATLAB, 28 linesm - core/
ccs_core_polyfit.m , MATLAB, 26 lines - core/
ccs_core_regressplot.m , MATLAB, 82 lines - core/
ccs_core_seedSurf.m , MATLAB, 90 lines - core/
ccs_core_surfclust.m , MATLAB, 131 lines - core/
ccs_findstrCell.m , MATLAB, 7 lines - core/
ccs_generateDivisions_su , MATLAB, 227 linesrface.m - core/
ccs_get3x3x3ts.m , MATLAB, 16 lines - core/
ccs_getINFO_surface.m , MATLAB, 57 lines - core/
ccs_getmetricsCONN.m , MATLAB, 131 lines - core/
ccs_gpanda_FiberNumMatri , MATLAB, 209 linesx.m - core/
ccs_icc2zstat.m , MATLAB, 8 lines - core/
ccs_locateNBRS_surface.m , MATLAB, 35 lines - core/
ccs_parReHo.m , MATLAB, 18 lines - core/
ccs_parsave.m , MATLAB, 8 lines - core/
ccs_regress.m , MATLAB, 16 lines - core/
ccs_scatterplot.m , MATLAB, 43 lines - core/
ccs_strfind.m , MATLAB, 7 lines - core/
ccs_subcell.m , MATLAB, 5 lines - core/
ccs_write2graph_gexf.m , MATLAB, 115 lines - core/
outlets/ , MATLAB, 31 linesccs_ReHo.m - core/
outlets/ , MATLAB, 41 linesccs_checkGeometry_surfac e.m - core/
outlets/ , MATLAB, 9 linesccs_circos_normalize.m - core/
outlets/ , MATLAB, 12 linesccs_concatCell.m - core/
outlets/ , MATLAB, 82 linesccs_core_regressplot.m - core/
outlets/ , MATLAB, 7 linesccs_findstrCell.m - core/
outlets/ , MATLAB, 227 linesccs_generateDivisions_su rface.m - core/
outlets/ , MATLAB, 16 linesccs_get3x3x3ts.m - core/
outlets/ , MATLAB, 57 linesccs_getINFO_surface.m - core/
outlets/ , MATLAB, 131 linesccs_getmetricsCONN.m - core/
outlets/ , MATLAB, 8 linesccs_icc2zstat.m - core/
outlets/ , MATLAB, 35 linesccs_locateNBRS_surface.m - core/
outlets/ , MATLAB, 18 linesccs_parReHo.m - core/
outlets/ , MATLAB, 8 linesccs_parsave.m - core/
outlets/ , MATLAB, 16 linesccs_regress.m - core/
outlets/ , MATLAB, 43 linesccs_scatterplot.m - core/
outlets/ , MATLAB, 7 linesccs_strfind.m - core/
outlets/ , MATLAB, 5 linesccs_subcell.m - core/
outlets/ , MATLAB, 121 linesccs_yeo7rsn_contours.m - core/
outlets/ , MATLAB, 49 linesicbm_fsl2tal.m - core/
outlets/ , MATLAB, 50 linesicbm_other2tal.m - core/
outlets/ , MATLAB, 49 linesicbm_spm2tal.m - core/
outlets/ , MATLAB, 52 linestal2icbm_fsl.m - core/
outlets/ , MATLAB, 53 linestal2icbm_other.m - core/
outlets/ , MATLAB, 52 linestal2icbm_spm.m - projects/
ccsdemo/ , MATLAB, 40 linesccs_core_graphnbtw.m - projects/
ccsdemo/ , MATLAB, 32 linesccs_core_graphwalk.m - projects/
ccsdemo/ , MATLAB, 25 linesdemo_walkCentrality.m - projects/
hcpdemo/ , MATLAB, 65 linesccshcp_core_alff.m - projects/
hcpdemo/ , MATLAB, 33 linesccshcp_core_alffmat.m - projects/
hcpdemo/ , MATLAB, 75 linesccshcp_core_bwvgraph.m - projects/
hcpdemo/ , MATLAB, 14 linesccshcp_core_dc.m - projects/
hcpdemo/ , MATLAB, 29 linesccshcp_core_ec.m - projects/
hcpdemo/ , MATLAB, 31 linesccshcp_core_fastcorr.m - projects/
hcpdemo/ , MATLAB, 73 linesccshcp_core_pc.m - projects/
hcpdemo/ , MATLAB, 18 linesccshcp_core_reho.m - projects/
hcpdemo/ , MATLAB, 70 linesccshcp_core_sc.m - projects/
hcpdemo/ , MATLAB, 81 linesccshcp_core_scec.m - projects/
hcpdemo/ , MATLAB, 35 linesccshcp_seedvertex_conte6 9.m - projects/
hcpdemo/ , MATLAB, 395 linesdemo_classmetrics.m - projects/
hcpdemo/ , MATLAB, 275 linesdemo_fconnblock.m - projects/
hcpdemo/ , MATLAB, 357 linesdemo_vismetrics.m - projects/
hcpdemo/ , MATLAB, 64 linesgenerate_adjmat_conte69. m - projects/
hcpdemo/ , MATLAB, 69 linesgenerate_adjmat_hcp64sur f59k.m - projects/
hcpdemo/ , MATLAB, 36 linesgenerate_yeo2011rsnCI.m - projects/
hcpdemo/ , MATLAB, 40 linesgenerate_yeo2015cogcomPA .m - projects/
hcpdemo/ , MATLAB, 41 linesmapping_gsurfmetrics.m - projects/
hcpdemo/ , MATLAB, 353 linesmapping_surfmetrics.m - projects/
hcpdemo/ , MATLAB, 203 linesmapping_surfmetrics7T.m - projects/
hcpdemo/ , MATLAB, 220 linesrender_statsurfs.m - samplesScripts/
ccs_anat_01_pre_freesurf , Shell, 100 lineser.sh - samplesScripts/
ccs_anat_02_freesurfer.s , Shell, 53 linesh - samplesScripts/
ccs_anat_03_postfs.sh , Shell, 77 lines - samplesScripts/
ccs_anatproc_template.sh , Shell, 105 lines - samplesScripts/
ccs_funcproc_template.sh , Shell, 130 lines, 1 match - samplesScripts/
ccs_postproc_template.sh , Shell, 73 lines - samplesScripts/
ccs_pre_bids2ccs.py , Python, 118 lines - samplesScripts/
runSurfaceCCS_template.m , MATLAB, 74 lines - samplesScripts/
step1_ccs_preproc_anat_F , Python, 48 linesS.py - samplesScripts/
step2_ccs_preproc_anat_p , Python, 48 linesostFS.py - samplesScripts/
step3_ccs_preproc_func_a , Python, 47 linesllsteps.py - samplesScripts/
step4_ccs_preproc_CCS2HC , Python, 81 linesP.py - samplesScripts/
template_preproc_funcpar , Shell, 35 linest.sh - LICENSE, License, 340 lines
- README.md, Text, 92 lines
dzjin5678/co-fluctuation-scores
ed94e54c614fc0f2597236f626e81b7881080363, 5 June 2026Availability: 1 check, the latest on 27 September 2026: the link answers
- 27 September 2026: the link answers
49 files
- bins_ccnp_co_fluc_analys
is.m , MATLAB, 147 lines - bins_hcp7t_co_fluc_analy
sis.m , MATLAB, 358 lines - bins_hcp_co_fluc_analysi
s.m , MATLAB, 489 lines, 1 match - bins_hcpd_co_fluc_analys
is.m , MATLAB, 101 lines - scripts/
GAMs_fixed.R , R, 228 lines, 2 matches - scripts/
GAMs_mixed.R , R, 205 lines, 1 match - scripts/
bins_hcp_co_fluc_analysi , MATLAB, 140 liness_phase_shift_1.m - scripts/
bold_physio_phase_mappin , MATLAB, 103 linesg.m - scripts/
calculate_cofluctuation_ , MATLAB, 37 linesscore.m - scripts/
ets_rss_physio_phase_map , MATLAB, 129 lines, 2 matchesping.m - scripts/
extract_myelin_pvalb_sst , MATLAB, 82 lines_map.m - scripts/
fitGAMs_CS_Schaefer200x1 , R, 121 lines, 1 match7.R - scripts/
fit_GAMs_fixed_glasser36 , R, 148 lines0.R - scripts/
fit_GAMs_fixed_glasser36 , R, 161 lines, 1 match0_3T.R - scripts/
fit_GAMs_fixed_schaefer2 , R, 148 lines00x17.R - scripts/
fit_GAMs_fixed_schaefer2 , R, 178 lines00x17_3T.R - scripts/
fit_GAMs_fixed_schaefer2 , R, 168 lines00x17_7T.R - scripts/
fit_GAMs_fixed_schaefer4 , R, 148 lines00x17.R - scripts/
fit_GAMs_fixed_schaefer4 , R, 164 lines, 1 match00x17_3T.R - scripts/
fit_GAMs_mixed_schaefer2 , R, 139 lines00x17.R - scripts/
mechanism/ , R, 238 linesplot_mechanism_map.R - scripts/
plot_CS_GAM_results.R , R, 512 lines - scripts/
plot_GAM_fitting_example , R, 221 liness_16_regions.R - scripts/
plot_GAMs_fixed_results_ , R, 321 linesglasser360.R - scripts/
plot_GAMs_fixed_results_ , R, 557 linesschaefer200x17.R - scripts/
plot_GAMs_fixed_results_ , R, 320 linesschaefer400x17.R - scripts/
plot_GAMs_mixed_results. , R, 533 linesR - scripts/
plot_mechanism_map.R , R, 66 lines - scripts/
plot_noise.R , R, 45 lines - scripts/
ploting_hcp3t_gsr_fd_hr_ , R, 43 linesbr_rss.R - scripts/
testing_GAMs_linear_nonl , R, 107 linesinear.R - scripts/
testing_GAMs_linear_nonl , MATLAB, 52 linesinear.m - scripts/
testing_covariates.m , MATLAB, 63 lines - scripts/
testing_ets_rss_physio_p , MATLAB, 106 lineshase_mapping.m - scripts/
testing_gam_model.m , MATLAB, 106 lines - scripts/
testing_hcp3t_cs.m , MATLAB, 448 lines - scripts/
testing_hcp3t_cs_server1 , MATLAB, 357 lines.m - scripts/
testing_hcp3t_gsr_fd_hr_ , MATLAB, 147 linesbr_rss.m - scripts/
testing_hcpd_cs.R , R, 222 lines - scripts/
testing_hcpd_cs.m , MATLAB, 494 lines, 1 match - scripts/
testing_individual_analy , MATLAB, 297 lines, 1 matchsis.m - scripts/
testing_local_global_eta , MATLAB, 123 lines.m - scripts/
testing_local_global_lea , MATLAB, 98 linesd_lag.m - scripts/
testing_noise.m , MATLAB, 51 lines - scripts/
testing_phase_random.m , MATLAB, 144 lines, 1 match - scripts/
testing_tSNR.R , R, 173 lines - scripts/
testing_tSNR.m , MATLAB, 271 lines - sketch/
plot_contri_sket_final.m , MATLAB, 366 lines - readme.md, Text, 132 lines
Zenodo 20722002
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
- 27 September 2026: the link answers (HTTP 200)
49 files
- bins_ccnp_co_fluc_analys
is.m , MATLAB, 147 lines - bins_hcp7t_co_fluc_analy
sis.m , MATLAB, 358 lines - bins_hcp_co_fluc_analysi
s.m , MATLAB, 489 lines - bins_hcpd_co_fluc_analys
is.m , MATLAB, 101 lines - scripts/
GAMs_fixed.R , R, 228 lines - scripts/
GAMs_mixed.R , R, 205 lines - scripts/
bins_hcp_co_fluc_analysi , MATLAB, 140 liness_phase_shift_1.m - scripts/
bold_physio_phase_mappin , MATLAB, 103 linesg.m - scripts/
calculate_cofluctuation_ , MATLAB, 37 linesscore.m - scripts/
ets_rss_physio_phase_map , MATLAB, 129 linesping.m - scripts/
extract_myelin_pvalb_sst , MATLAB, 82 lines_map.m - scripts/
fitGAMs_CS_Schaefer200x1 , R, 121 lines7.R - scripts/
fit_GAMs_fixed_glasser36 , R, 148 lines0.R - scripts/
fit_GAMs_fixed_glasser36 , R, 161 lines0_3T.R - scripts/
fit_GAMs_fixed_schaefer2 , R, 148 lines00x17.R - scripts/
fit_GAMs_fixed_schaefer2 , R, 178 lines00x17_3T.R - scripts/
fit_GAMs_fixed_schaefer2 , R, 168 lines00x17_7T.R - scripts/
fit_GAMs_fixed_schaefer4 , R, 148 lines00x17.R - scripts/
fit_GAMs_fixed_schaefer4 , R, 164 lines00x17_3T.R - scripts/
fit_GAMs_mixed_schaefer2 , R, 139 lines00x17.R - scripts/
mechanism/ , R, 238 linesplot_mechanism_map.R - scripts/
plot_CS_GAM_results.R , R, 512 lines - scripts/
plot_GAM_fitting_example , R, 221 liness_16_regions.R - scripts/
plot_GAMs_fixed_results_ , R, 321 linesglasser360.R - scripts/
plot_GAMs_fixed_results_ , R, 557 linesschaefer200x17.R - scripts/
plot_GAMs_fixed_results_ , R, 320 linesschaefer400x17.R - scripts/
plot_GAMs_mixed_results. , R, 533 linesR - scripts/
plot_mechanism_map.R , R, 66 lines - scripts/
plot_noise.R , R, 45 lines - scripts/
ploting_hcp3t_gsr_fd_hr_ , R, 43 linesbr_rss.R - scripts/
testing_GAMs_linear_nonl , R, 107 linesinear.R - scripts/
testing_GAMs_linear_nonl , MATLAB, 52 linesinear.m - scripts/
testing_covariates.m , MATLAB, 63 lines - scripts/
testing_ets_rss_physio_p , MATLAB, 106 lineshase_mapping.m - scripts/
testing_gam_model.m , MATLAB, 106 lines - scripts/
testing_hcp3t_cs.m , MATLAB, 448 lines - scripts/
testing_hcp3t_cs_server1 , MATLAB, 357 lines.m - scripts/
testing_hcp3t_gsr_fd_hr_ , MATLAB, 147 linesbr_rss.m - scripts/
testing_hcpd_cs.R , R, 222 lines - scripts/
testing_hcpd_cs.m , MATLAB, 494 lines - scripts/
testing_individual_analy , MATLAB, 297 linessis.m - scripts/
testing_local_global_eta , MATLAB, 123 lines.m - scripts/
testing_local_global_lea , MATLAB, 98 linesd_lag.m - scripts/
testing_noise.m , MATLAB, 51 lines - scripts/
testing_phase_random.m , MATLAB, 144 lines - scripts/
testing_tSNR.R , R, 173 lines - scripts/
testing_tSNR.m , MATLAB, 271 lines - sketch/
plot_contri_sket_final.m , MATLAB, 366 lines - readme.md, Text, 132 lines
Code availability statement
The paper has a code availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:
- it points to the authors' code: dzjin5678/
co-fluctuation-scores
Read it in the paper: doi.org/10.1038/s41467-026-76011-7.
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 3 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 826 scripts, each with its path and the digest of its content;
- 17 matches between paragraphs of the paper and lines of the code (method lexical-v1);
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
No dataset and no data link were found in the paper.
Data availability statement
The paper has a data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:
- no repository, dataset or request procedure was recognized in it
Read it in the paper: doi.org/10.1038/s41467-026-76011-7.
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Version 1, 27 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 6 authors, 2 keywords, 12 MeSH terms, 1 funder, 114 references.
Cite
This paper
Jin, D.-Z., Zhou, C., Zuo, X.-N., Faskowitz, J., Xu, T., & He, Y. (2026). Human cortex organizes dynamic co-fluctuations along the sensorimotor-association
BibTeX
@article{jin2026human,
author = {Jin, De-Zhi and Zhou, Changsong and Zuo, Xi-Nian and Faskowitz, Joshua and Xu, Ting and He, Ye},
title = {{Human cortex organizes dynamic co-fluctuations along the sensorimotor-association
journal = {Nature communications},
year = {2026},
month = jul,
volume = {17},
number = {1},
pages = {9138},
publisher = {Nature Publishing Group},
issn = {2041-1723},
doi = {10.1038/
url = {https://
pmid = {42649187},
pmcid = {PMC13518953}
}
RIS
TY - JOUR
AU - Jin, De-Zhi
AU - Zhou, Changsong
AU - Zuo, Xi-Nian
AU - Faskowitz, Joshua
AU - Xu, Ting
AU - He, Ye
TI - Human cortex organizes dynamic co-fluctuations along the sensorimotor-association
T2 - Nature communications
J2 - Nat Commun
PY - 2026
DA - 2026/
VL - 17
IS - 1
SP - 9138
SN - 2041-1723
PB - Nature Publishing Group
DO - 10.1038/
UR - https://
LA - en
ER -
CSL-JSON
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}
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