systems

Subfield: 357 papers with a page, 257 of them with their authors' code.

Friday, 25 September 2026 (1 paper)

[1] Code ↔ Paper doi:10.1126/sciadv.adz9632 [paper, repository]

Population coding under the scale invariance of high-dimensional noise.

Journal: Science advances

Authors' code: Zenodo 19504768 (CC-BY-4.0), Sai-Sumedh/scaling-population-coding (no license)

Status: code verified, 77 files readable, 6 matches

Monday, 21 September 2026 (1 paper)

[2] Code ↔ Paper doi:10.7554/elife.106554 [paper, repository]

Enhanced tactile coding in rat neocortex under darkness.

Journal: eLife

Authors' code: UT-yakusaku/Yamashiro-eLife-2024 (MIT)

Status: code verified, 9 files readable, 2 matches

Saturday, 19 September 2026 (1 paper)

[3] doi:10.1186/s12868-026-01050-1 [paper, data]

Structural characteristics of local cortical networks wired by distance dependent connectivity rules.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

Friday, 18 September 2026 (1 paper)

[4] Code ↔ Paper doi:10.7554/elife.100880 [paper, repository]

An applicable and efficient retrograde monosynaptic circuit mapping tool for larval zebrafish.

Journal: eLife

Authors' code: navis-org/navis (GPL-3.0), soaringdu/Proj-RVCT (no license)

Status: code verified, 305 files readable, 1 match

Tuesday, 15 September 2026 (1 paper)

[5] Code ↔ Paper doi:10.1038/s41467-026-76109-y [paper, repository]

Assistive algorithms influence neural representations in motor brain-computer interfaces.

Journal: Nature communications

Authors' code: pavi-rajes/assistive-sensory-motor-perturbations-influence-learned-neural-representations (no license)

Status: code verified, 53 files readable, 11 matches

Friday, 11 September 2026 (2 papers)

[6] Code ↔ Paper doi:10.1126/sciadv.aec6658 [paper, repository]

A unifying principle of chromatic coding across biological and artificial systems.

Journal: Science advances

Authors' code: Zenodo 20954249 (CC-BY-4.0)

Status: code verified

[7] doi:10.1126/sciadv.aeg2327 [paper, data]

Top-down corticostriatal control of adaptive restraint during motivational conflict.

Journal: Science advances

Status: data only, 1 dataset cited

Thursday, 10 September 2026 (1 paper)

[8] doi:10.1162/imag.a.1356 [paper]

Sources of the N15 TMS-evoked potential following motor cortex stimulation localize rostrals to TMS-induced electric fields and depend on dose.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

Tuesday, 8 September 2026 (1 paper)

[9] doi:10.1073/pnas.2604933123 [paper, data]

Neuromotor modules revealed by direct electrical stimulation of the human primary motor cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

Monday, 7 September 2026 (1 paper)

[10] Code ↔ Paper doi:10.1016/j.isci.2026.117459 [paper, repository]

Behavioral states affect eye position tuning in the parietal cortex of macaques.

Journal: iScience

Authors' code: francescovaccari/NeuralDataAnalysis_MATLAB (BSD-3-Clause)

Status: code verified, 28 files readable, 9 matches

Friday, 4 September 2026 (1 paper)

[11] Code ↔ Paper doi:10.1126/sciadv.aeg6797 [paper, repository]

Dorsoventral gradient of theta sweeps in the medial entorhinal cortex.

Journal: Science advances

Authors' code: Zenodo 21427119 (CC-BY-4.0), zilongji/topographythetasweeps (no license)

Status: code verified, 39 files readable, 9 matches

Thursday, 3 September 2026 (2 papers)

[12] Code ↔ Paper doi:10.1038/s41467-026-77318-1 [paper, repository]

Offline generative network reconfiguration guides insight-like accelerated learning by assimilation into schema in rats.

Journal: Nature communications

Authors' code: GDYlab/GDYlabcode (no license)

Status: code verified, 200 files readable, 7 matches

[13] Code ↔ Paper doi:10.7554/elife.108408 [paper, repository]

Frequency and laminar profile of feature-specific visual activity revealed by interleaved EEG-fMRI.

Journal: eLife

Authors' code: TommyClausner/laminarfMRIv2 (MIT), Zenodo 7211757 (other-open), tommyclausner/mri-volume-masker-3000-tm (GPL-3.0)

Status: code verified, 209 files readable, 18 matches

Wednesday, 2 September 2026 (4 papers)

[14] Code ↔ Paper doi:10.1038/s41467-026-77168-x [paper, repository]

Cholinergic-dependent dopamine signals in mouse dorsomedial striatum are regulated by frontal but not sensory cortices.

Journal: Nature communications

Authors' code: Zenodo 21651635 (CC-BY-4.0)

Status: code verified, 27 files readable, 2 matches

[15] doi:10.1126/sciadv.aeb6839 [paper, data]

A male-biased hypothalamic circuit modulates postmating sleep suppression in mice.

Journal: Science advances

Status: data only, 1 dataset cited

[16] doi:10.1523/jneurosci.0925-26.2026 [paper, data]

Brain Architecture of Punishment Learning.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[17] Code ↔ Paper doi:10.1523/jneurosci.0295-26.2026 [paper, repository]

Detection and Removal of Hyper-synchronous Artifacts in Massively Parallel Spike Recordings.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: doi:10.12751/incf.ni2018.0019 (no license)

Status: code verified

Tuesday, 1 September 2026 (7 papers)

[18] Code ↔ Paper doi:10.1002/hipo.70131 [paper, repository]

Decoding Medial Entorhinal Cortical Dynamics Produces Planning-Like Alternations in Hippocampal theta Sequences.

Journal: Hippocampus

Authors' code: Zenodo 18340856 (CC-BY-4.0)

Status: code verified, 20 files readable, 8 matches

[19] doi:10.1111/ejn.70681 [paper]

Bidirectional EEG Neurofeedback of Sensorimotor Beta Oscillations Reveals Asymmetric Modulation and Strategy-Dependent Learning.

Journal: The European journal of neuroscience

Status: code on request

[20] Code ↔ Paper doi:10.1371/journal.pbio.3003979 [paper, repository]

Impaired midfrontal‑motor theta phase synchronization characterizes maladaptive motivational behavior in people with obsessive‑compulsive disorder.

Journal: PLoS biology

Authors' code: Zenodo 21964069 (MIT), yupang11/motivational-biases-in-ocd (MIT)

Status: code verified, 115 files readable, 12 matches

[21] Code ↔ Paper doi:10.1371/journal.pbio.3003916 [paper, repository]

Arousal-driven critical roaming reproduces human functional connectivity dynamics.

Journal: PLoS biology

Authors' code: Zenodo 20798972 (CC-BY-4.0), juanitacabral/NetworkModel_Toolbox (no license)

Status: code verified, 37 files readable, 2 matches

[22] Code ↔ Paper doi:10.1002/alz.71714 [paper, repository]

Cross-tissue immune profiling of APOE ε4 reveals early dysregulation in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Art83/AD_apoe (no license)

Status: dead link

[23] doi:10.1111/ejn.70666 [paper, data]

Resting State Functional Connectivity Among Cortical and Subcortical Grey Matter Structures Can Distinguish Fallers in Parkinson's Disease.

Journal: The European journal of neuroscience

Status: code on request, 2 datasets cited

[24] Code ↔ Paper doi:10.1111/ejn.70660 [paper, repository]

Intracranial Electrical Stimulation of the Superior Temporal Gyrus Evokes Rapid Responses in Human Visual Cortex.

Journal: The European journal of neuroscience

Authors' code: multisensory-lab/msl_CCEP_stg2occ (no license)

Status: dead link

Monday, 31 August 2026 (1 paper)

[25] doi:10.1186/s10194-026-02476-y [paper]

Trigeminal nociceptive somatotopy across brainstem and cortex and their functional interactions.

Journal: The journal of headache and pain

Status: code on request

Saturday, 29 August 2026 (3 papers)

[26] doi:10.1038/s41467-026-77240-6 [paper]

Prefrontal-thalamic goal states organize spatially aligned hippocampal maps.

Journal: Nature communications

Status: code on request

[27] Code ↔ Paper doi:10.1007/s10994-026-07118-7 [paper, repository]

Neural Probabilistic Circuits: Enabling Compositional and Interpretable Predictions Through Logical Reasoning.

Journal: Machine learning

Authors' code: uiuctml/npc-models (CC-BY-NC-SA-4.0)

Status: code verified, 30 files readable, 8 matches

[28] Code ↔ Paper doi:10.1016/j.isci.2026.117375 [paper, repository]

Motor priming is associated with widespread recruitment into neural ensembles and more rapid ensemble transitions.

Journal: iScience

Authors' code: Zenodo 21875573 (CC-BY-4.0), Byrne-Lab/tca_egestive_priming_2025 (no license), Byrne-Lab/VSD_CFE_analysis (no license)

Status: code verified, 88 files readable, 15 matches

Friday, 28 August 2026 (2 papers)

[29] Code ↔ Paper doi:10.1016/j.isci.2026.117359 [paper, repository]

Connectomic mapping of pharyngeal and gut sensory circuits in adult <i>Drosophila</i>.

Journal: iScience

Authors' code: google/neuroglancer (Apache-2.0), ZepengYao-Lab/Giakoumas-et-al (no license)

Status: code verified, 960 files readable, 14 matches

[30] Code ↔ Paper doi:10.3389/fnhum.2026.1887834 [paper, repository]

Neural substrates of ambiguity and beauty in haiku poetry: an fMRI study.

Journal: Frontiers in human neuroscience

Authors' code: OSF emsp4 (no license)

Status: code verified, 13 files readable, 4 matches

Thursday, 27 August 2026 (2 papers)

[31] Code ↔ Paper doi:10.1371/journal.pcbi.1014653 [paper, repository]

Noisy models of the ventral stream reveal the impact of recurrence and learned representations on information processing timescales.

Journal: PLoS computational biology

Authors' code: Saravaretti/hierarchical-cnn-rnn (no license)

Status: code verified, 9 files readable, 1 match

[32] Code ↔ Paper doi:10.1038/s41467-026-76242-8 [paper, repository]

Whole-brain, all-optical interrogation of neuronal dynamics underlying gut and vascular interoception in zebrafish.

Journal: Nature communications

Authors' code: benJames1212/gutBrainPipeline (MIT), mikarubi/voluseg (MIT), ades91/imdecorr (GPL-3.0), JaneliaSciComp/bigstream (BSD-3-Clause)

Status: code verified, 134 files readable, 5 matches

Wednesday, 26 August 2026 (2 papers)

[33] Code ↔ Paper doi:10.1016/j.isci.2026.117355 [paper, repository]

Transient gamma events delineate somatosensory modality in S1.

Journal: iScience

Authors' code: jonescompneurolab/SpectralEvents (BSD-3-Clause)

Status: code verified, 13 files readable, 3 matches

[34] Code ↔ Paper doi:10.1016/j.isci.2026.117311 [paper, repository]

Thalamocortical network dynamics can explain visual impulse responses and perceptual echoes.

Journal: iScience

Authors' code: OSF 25axj (no license)

Status: code verified

Tuesday, 25 August 2026 (2 papers)

[35] doi:10.1073/pnas.2614164123 [paper, data]

Loss of neuronal population organization links pathology to behavior in a model of Alzheimer's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36] Code ↔ Paper doi:10.1162/netn.a.575 [paper, repository]

Parallel multilink group joint ICA (pmg-jICA): Fusion of 3D structural and 4D functional data across multiple resting fMRI networks.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: trendscenter/fit (no license)

Status: code verified, 587 files readable, 2 matches

Monday, 24 August 2026 (1 paper)

[37] Code ↔ Paper doi:10.1162/imag.a.1338 [paper, repository]

Systematic fMRI signal differences across cohorts alter lifespan trajectories of functional brain networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: andy1764/CovBat_Harmonization (no license), mychan24/system-segregation-and-graph-tools (MIT)

Status: code verified, 27 files readable, 2 matches

Friday, 21 August 2026 (1 paper)

[38] Code ↔ Paper doi:10.1126/sciadv.aed6417 [paper, repository]

Intrinsic timing, not temporal prediction, underlies ramping dynamics in visual and parietal cortex during passive behavior.

Journal: Science advances

Authors' code: najafi-laboratory/2p_imaging (no license)

Status: code verified, 63 files readable, 2 matches

Thursday, 20 August 2026 (2 papers)

[39] doi:10.1007/s12311-026-02065-4 [paper]

EEG-ECeG Coherence Mapping of Human Cerebro-cerebellar Projections: An Exploratory Study.

Journal: Cerebellum (London, England)

Status: code on request

[40] doi:10.1162/imag.a.1343 [paper]

Metabolic connectivity alterations in amyotrophic lateral sclerosis: Individual network analysis based on Wasserstein distances.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

Wednesday, 19 August 2026 (1 paper)

[41] Code ↔ Paper doi:10.1038/s41467-026-76104-3 [paper, repository]

Sensorimotor remapping drives task specialization in prefrontal cortex.

Journal: Nature communications

Authors' code: HTissot42/Sensorimotor-remapping-drives-task-specialization (no license)

Status: code verified, 59 files readable, 21 matches

Tuesday, 18 August 2026 (6 papers)

[42] Code ↔ Paper doi:10.7554/elife.107099 [paper, repository]

Local inhibitory dynamics underpin temporal integration and functional segregation between barrels and septa in the mouse barrel cortex.

Journal: eLife

Authors' code: supp:PMC13485306/elife-107099-code1.zip (no license), supp:PMC13485306/elife-107099-code2.zip (no license), supp:PMC13485306/elife-107099-code3.zip (no license), supp:PMC13485306/elife-107099-code5.zip (no license), supp:PMC13485306/elife-107099-code6.zip (no license)

Status: code verified, 5 files readable, 3 matches

[43] Code ↔ Paper doi:10.1371/journal.pcbi.1014595 [paper, repository]

Cerebellum-inspired neural network of supervised learning with tensor-based sparse coding for multi-class classification.

Journal: PLoS computational biology

Authors' code: runguangzhou/Cerebellum-inspired-neural-network (no license), zalandoresearch/fashion-mnist (MIT)

Status: code verified, 15 files readable

[44] Code ↔ Paper doi:10.1073/pnas.2603853123 [paper, repository]

A nose-to-brain circuit underlies anxiety regulation by nasal afferent frequency in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 33136013 (CC-BY-4.0)

Status: code verified, 20 files readable

[45] Code ↔ Paper doi:10.3390/brainsci16080880 [paper, repository]

A Mixed Longitudinal EEG Study of Sensorimotor Rhythm Modulation and Its Relationship with Language Development in Children Aged 3-10 Years.

Journal: Brain sciences

Authors' code: OSF mnuaz (no license)

Status: code verified, 3 files readable, 2 matches

[46] Code ↔ Paper doi:10.1016/j.isci.2026.117074 [paper, repository]

The effects of action-based predictions in early visual cortex.

Journal: iScience

Authors' code: Zenodo 20507627 (CC-BY-4.0)

Status: code verified, 8 files readable, 4 matches

[47] Code ↔ Paper doi:10.1016/j.isci.2026.117136 [paper, repository]

Complex pectoral-fin-driven locomotion underlies refined visuomotor behavior in the cichlid <i>Astatotilapia burtoni</i>.

Journal: iScience

Authors' code: Zenodo 21463359 (MIT), ncguilbeault/cichlid_omr_analysis (MIT)

Status: code verified, 66 files readable, 3 matches

Monday, 17 August 2026 (3 papers)

[48] Code ↔ Paper doi:10.1371/journal.pcbi.1014656 [paper, repository]

Contrastive learning to fine-tune feature extraction models for the visual cortex.

Journal: PLoS computational biology

Authors' code: alexmul1114/fmri_encoding_contrastive_learning (no license)

Status: code verified, 16 files readable, 5 matches

[49] doi:10.3390/brainsci16080872 [paper]

HDGNN-Mamba2: Mamba-Based Spatiotemporal Heterogeneous Dynamic Graph Neural Network for Major Depressive Disorder Classification.

Journal: Brain sciences

Status: code on request

[50] Code ↔ Paper doi:10.3390/life16081352 [paper, repository]

Linking Embodiment, Simulator Sickness, and EEG Activity During XR-BCI Use: A Single-Participant Case Study.

Journal: Life (Basel, Switzerland)

Authors' code: OSF 9hmxj (no license)

Status: code verified, 1 file readable

Friday, 14 August 2026 (4 papers)

[51] Code ↔ Paper doi:10.1126/sciadv.aea1037 [paper, repository]

Distinct cortical spatial representations learned along disparate visual pathways.

Journal: Science advances

Authors' code: Zenodo 21088614 (CC-BY-4.0), Zenodo 13502205 (CC-BY-4.0), hasselmonians/lachance_hasselmo_por_rsc (no license), yanbolian/learning-distinct-egocentric-cells (no license)

Status: code verified, 1,395 files readable, 3 matches

[52] Code ↔ Paper doi:10.1126/sciadv.aeb4666 [paper, repository]

Strong connections of locally clustered neurons in the upper-layer cortex underlie schizophrenia-related auditory deviance detection.

Journal: Science advances

Authors' code: Zenodo 19639395 (CC-BY-4.0)

Status: code verified

[53] Code ↔ Paper doi:10.1038/s41592-026-03179-7 [paper, repository]

Voltage imaging of neurons distributed across entire brains of larval zebrafish.

Journal: Nature methods

Authors' code: Zenodo 14920628 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[54] Code ↔ Paper doi:10.3390/jimaging12080384 [paper, repository]

Understanding Trade-Offs in Continuous Neural Representations for Diffeomorphic Image Registration: A Comparative Study of Implicit Neural Representations and Neural Ordinary Differential Equations.

Journal: Journal of imaging

Authors' code: yifannnwu/NODEO-DIR (no license), MIAGroupUT/IDIR (MIT), BrainImageAnalysis/INRsRegExp (MIT), mhglddmm/INRvsNODE_LDDMM (GPL-3.0)

Status: code verified, 30 files readable

Wednesday, 12 August 2026 (4 papers)

[55] Code ↔ Paper doi:10.1523/jneurosci.2001-25.2026 [paper, repository]

Dynamics of Dentate Gyrus Place Cells and Dentate Spikes during Spatial and Nonspatial Changes in Environments.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Julie-Fabre/bombcell (GPL-3.0), ColginLab/Demetrovich_Colgin_2026 (no license), ColginLab/ColginLabCode (no license)

Status: code verified, 1,503 files readable, 19 matches

[56] Code ↔ Paper doi:10.7554/elife.103956 [paper, repository]

Human brain-wide activation of sleep rhythms.

Journal: eLife

Authors' code: liu_lab/eeg-fmri-sleep (MIT)

Status: code verified, 5 files readable, 2 matches

[57] Code ↔ Paper doi:10.1177/13872877261477016 [paper, repository]

Progression from mild cognitive impairment to dementia in Alzheimer's disease: Whole cortex voxelwise functional connectivity analysis with multivariate distance matrix regression.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: lkf-ki/mdmr-voxel-wise-mci-conversion (GPL-3.0)

Status: code verified, 4 files readable

[58] Code ↔ Paper doi:10.1038/s41467-026-76574-5 [paper, repository]

Prefrontal-raphe-habenular circuit drives fear memory recall and updating.

Journal: Nature communications

Authors' code: nikolaskaralis (no license), Zenodo 21026721 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

Tuesday, 11 August 2026 (3 papers)

[59] Code ↔ Paper doi:10.1038/s41467-026-76581-6 [paper, repository]

Thalamocortical bursts encode reward contingencies and drive associative learning.

Journal: Nature communications

Authors' code: bothlab/syntalos (no license), grohlab/thalamocortical-bursts-encode-reward-contingencies-and-drive-associative-learning (no license), doi:10.5061/dryad.hdr7sqvt1 (no license), Zenodo 21249852 (CC-BY-4.0), alleninstitute/ecephys_spike_sorting (BSD-2-Clause), Zenodo 13369686 (CC-BY-4.0), Zenodo 21429439 (MIT), grohlab/a-tactile-discrimination-task-to-study-neuronal-dynamics-in-freely-moving-mice (no license)

Status: code verified, 1,148 files readable, 11 matches

[60] Code ↔ Paper doi:10.1093/braincomms/fcag303 [paper, repository]

Sleep spindles are linked to white matter connectivity differentially in older adults with and without cognitive impairment.

Journal: Brain communications

Authors' code: OSF uy7jk (no license)

Status: code verified, 1 file readable, 2 matches

[61] Code ↔ Paper doi:10.3390/ani16162494 [paper, repository]

Categorical Representation of Numerosity in the Pigeon Entopallium: Coding Format and Temporal Dynamics.

Journal: Animals : an open access journal from MDPI

Authors' code: BrainSystemsLab/Data_and_Code_for_ENTO (no license)

Status: code verified, 11 files readable, 1 match

Monday, 10 August 2026 (4 papers)

[62] doi:10.1038/s43856-026-01846-6 [paper, data]

High-frequency visual stimulation can increase medial temporal lobe ripple oscillation density.

Journal: Communications medicine

Status: data only, 1 dataset cited

[63] Code ↔ Paper doi:10.1016/j.isci.2026.116936 [paper, repository]

Beyond neural oscillations: Stress-related aperiodic activity and aperiodic-oscillatory spectral covariation.

Journal: iScience

Authors' code: alvinleekarfye/alvin-aperiodic-stressinduction-analysis-2026 (MIT), Zenodo 21207822 (MIT), craddm/eegutils (other)

Status: code verified, 160 files readable, 3 matches

[64] Code ↔ Paper doi:10.1016/j.isci.2026.117068 [paper, repository]

Directed graph neural networks with partial directed coherence for seizure prediction and epileptogenic network characterization.

Journal: iScience

Authors' code: chenshuozhao/PDC-DiGCN-Seizure-Prediction (no license)

Status: code verified, 14 files readable, 13 matches

[65] doi:10.3389/fnins.2026.1909680 [paper, data]

A CNN-BiLSTM-GRU and attention-integrated hybrid network for epileptic seizure detection.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

Sunday, 9 August 2026 (1 paper)

[66] Code ↔ Paper doi:10.3390/biomimetics11080569 [paper, repository]

Pretraining of Embodied Recurrent Networks Bridges the Gap Between Artificial and Cortical Neural Activities.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: RevuBu/Pretrained_RNN (no license)

Status: code verified, 35 files readable, 8 matches

Saturday, 8 August 2026 (1 paper)

[67] Code ↔ Paper doi:10.1016/j.isci.2026.117088 [paper, repository]

Spatial biases in visual feature representation of mouse dorsal lateral geniculate nucleus boutons.

Journal: iScience

Authors' code: Swamylab/Cha_et_al_Mouse_dLGN_FeatureMaps (no license), davidcsterratt/retistruct (no license)

Status: code verified, 131 files readable, 4 matches

Friday, 7 August 2026 (2 papers)

[68] Code ↔ Paper doi:10.1016/j.neuron.2026.07.016 [paper, repository]

Inferring brain-wide interactions using data-constrained recurrent neural network models.

Journal: Neuron

Authors' code: HarveyLab/Acquisition2P_class (MIT), OSF u3kcp (no license), rajanlab/CURBD (GPL-3.0)

Status: code verified, 165 files readable, 8 matches

[69] Code ↔ Paper doi:10.1038/s42003-026-10751-6 [paper, repository]

Frequency-specific cortical subnetworks support fast human swallowing.

Journal: Communications biology

Authors' code: Zenodo 20393275 (MIT), muhlep/swallowing-meg-connectivity (MIT)

Status: code verified, 25 files readable, 8 matches

Thursday, 6 August 2026 (2 papers)

[70] doi:10.1016/j.xpro.2026.104769 [paper]

Protocol to improve gradient-index lens implantation in the mouse medial prefrontal cortex using NeuralGlider-assisted insertion.

Journal: STAR protocols

Status: code on request

[71] Code ↔ Paper doi:10.1162/imag.a.1322 [paper, repository]

Fine-scale individualized gyral folding-based cortical similarity networks reveal distinct organizational patterns in Alzheimer's disease and Lewy body dementia.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: m1nhengChen/Gyral-Folding-Network (MIT)

Status: code verified, 6 files readable, 9 matches

Wednesday, 5 August 2026 (6 papers)

[72] Code ↔ Paper doi:10.1523/jneurosci.0038-26.2026 [paper, repository]

Multidimensional Feature Tuning in Category Selective Areas of Human Visual Cortex.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: levandyck/roidims (no license)

Status: code verified, 19 files readable, 11 matches

[73] Code ↔ Paper doi:10.1371/journal.pone.0354021 [paper, repository]

A genetic algorithm for self-supervised models of oscillatory neurodynamics.

Journal: PloS one

Authors' code: HNXJ/GSDR (no license), supp:PMC13440876/pone.0354021.s002.zip (no license)

Status: code verified, 36 files readable, 7 matches

[74] Code ↔ Paper doi:10.1126/sciadv.aec0518 [paper, repository]

Hybrid spatial organization and evidence for magnitude-independent neural coding of linguistic information during sentence production.

Journal: Science advances

Authors' code: Zenodo 20543385 (CC-BY-4.0)

Status: code verified, 41 files readable, 3 matches

[75] Code ↔ Paper doi:10.1038/s41467-026-75979-6 [paper, repository]

Artificial neural manifolds.

Journal: Nature communications

Authors' code: Zenodo 20688765 (CC-BY-4.0), Arvin-xd/Neural-manifold-for-short-term-prediction (no license)

Status: code verified, 138 files readable

[76] Code ↔ Paper doi:10.1038/s41593-026-02388-9 [paper, repository]

Hippocampal CA3 connectomics reveals a gradient of mossy fiber inputs and selective feedforward inhibition onto pyramidal cells.

Journal: Nature neuroscience

Authors' code: seung-lab/seuron (MIT), seung-lab/cloud-volume (BSD-3-Clause), navis-org/navis-mousebrains (GPL-3.0), seung-lab/ca3_paper (CC-BY-4.0), CAVEconnectome (no license)

Status: code verified, 212 files readable, 16 matches

[77] Code ↔ Paper doi:10.1016/j.isci.2026.117108 [paper, repository]

PVT inhibition mitigates neuropathology and cognitive deficits in chronic cerebral hypoperfusion.

Journal: iScience

Authors' code: SunLab-code/WGCNA-CCH-iScience (no license)

Status: code verified, 2 files readable, 1 match

Tuesday, 4 August 2026 (6 papers)

[78] Code ↔ Paper doi:10.7554/elife.106081 [paper, repository]

Heritability of movie-evoked brain activity and connectivity.

Journal: eLife

Authors' code: dsclab42/Gruskin-eLife2026 (MIT)

Status: code verified, 28 files readable, 11 matches

[79] Code ↔ Paper doi:10.21203/rs.3.rs-10218667/v1 [paper, repository]

Combining ultra-flexible electrodes with two-photon imaging to illuminate brain-wide neural dynamics

Journal: Research Square (preprint)

Authors' code: bichanw/RRR (no license)

Status: code verified, 18 files readable, 2 matches

[80] Code ↔ Paper doi:10.1523/eneuro.0012-26.2026 [paper, repository]

I Can't Hear You Both at the Same Time: A Temporal Dilemma During Inter-Regional Communication.

Journal: eNeuro

Authors' code: tedyUM/CommunicationDilemma_models (no license)

Status: code verified, 8 files readable

[81] doi:10.1038/s41467-026-76183-2 [paper, data]

Vestibular nucleus stimulation for ameliorating locomotor dynamics in a Parkinsonian mouse model.

Journal: Nature communications

Status: code on request, 1 dataset cited

[82] Code ↔ Paper doi:10.1162/imag.a.1325 [paper, repository]

Decoding everyday levels of musical training from subcortical white-matter architecture.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MassimoLumaca/neuroARC (no license), MassimoLumaca/neuroTraining (no license)

Status: code verified, 15 files readable, 7 matches

[83] doi:10.3389/fmicb.2026.1811435 [paper, data]

Research on the role of gut microbiota metabolites in autism by multi-omics and network pharmacology.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

Monday, 3 August 2026 (4 papers)

[84] doi:10.1371/journal.pone.0343481 [paper, data]

Food preference and gender are associated with medial/frontopolar prefrontal regions functional near-infrared spectroscopy responses during eating: An exploratory study in young adults.

Journal: PloS one

Status: data only, 1 dataset cited

[85] Code ↔ Paper doi:10.1038/s41593-026-02350-9 [paper, repository]

Probing inter-areal computations with a two-photon holographic mesoscope.

Journal: Nature neuroscience

Authors' code: mesoholo/mesoholo (no license)

Status: code verified, 102 files readable, 8 matches

[86] doi:10.1016/j.isci.2026.117015 [paper]

Dynamic functional connectivity variability may explain hypoxia-induced cognitive impairment at high-altitude.

Journal: iScience

Status: code on request

[87] Code ↔ Paper doi:10.3389/fneur.2026.1895626 [paper, repository]

Data-centric strategies enable cross-center generalization of convolutional neural networks for CT brain extraction.

Journal: Frontiers in neurology

Authors' code: aqqush/CT_BET (no license)

Status: code verified, 6 files readable

Saturday, 1 August 2026 (5 papers)

[88] Code ↔ Paper doi:10.1093/brain/awaf466 [paper, repository]

Cortico-basal oscillations index naturalistic movements during deep brain stimulation.

Journal: Brain : a journal of neurology

Authors' code: openmind-consortium (no license)

Status: code verified

[89] Code ↔ Paper doi:10.1167/jov.26.8.9 [paper, repository]

Subspace reverse-correlation estimation of receptive fields during free viewing.

Journal: Journal of vision

Authors' code: figshare 32257377 (CC-BY-4.0)

Status: code verified, 1 file readable

[90] Code ↔ Paper doi:10.1002/cns.71114 [paper, repository]

Dynamic Functional Connectivity Changes in Cortical and Cortico-Striatal Strokes in Mice.

Journal: CNS neuroscience & therapeutics

Authors' code: Aswendt-Lab/AIDAmri (GPL-3.0), doi:10.12751/g-node.pmvtz1 (no license)

Status: code verified, 110 files readable, 5 matches

[91] doi:10.1002/hbm.70629 [paper, data]

Characterising the Diffusion Functional Signature of Negative BOLD With Interleaved TMS-fMRI in the Human Brain.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[92] Code ↔ Paper doi:10.1002/mp.70599 [paper, repository]

Accurate estimation of intravoxel incoherent motion parameters based on implicit neural representation.

Journal: Medical physics

Authors' code: Kent0n-Li/IVIM-INR (no license)

Status: code verified, 2 files readable, 4 matches

Friday, 31 July 2026 (2 papers)

[93] doi:10.1126/sciadv.aeb3579 [paper, data]

Elevating cerebellar theta oscillations boosts noninvasively induced motor plasticity.

Journal: Science advances

Status: data only, 1 dataset cited

[94] Code ↔ Paper doi:10.3389/fnhum.2026.1856059 [paper, repository]

Feasibility of fNIRS for assessing n-back task-related prefrontal cortex oxygenation after continuous cycling at varying intensities: an evaluation of protocol feasibility.

Journal: Frontiers in human neuroscience

Authors' code: lpollonini/qt-nirs (CC-BY-NC-SA-4.0)

Status: code verified, 12 files readable, 2 matches

Thursday, 30 July 2026 (4 papers)

[95] Code ↔ Paper doi:10.1038/s41593-026-02377-y [paper, repository]

Representations of the intrinsic value of information in mouse orbitofrontal cortex.

Journal: Nature neuroscience

Authors' code: Zenodo 20477351 (CC-BY-4.0), Zenodo 20479276 (CC-BY-4.0), Zenodo 20480778 (CC-BY-4.0), jjbussell/Bussell2026InfoValue (no license)

Status: code verified, 75 files readable, 21 matches

[96] Code ↔ Paper doi:10.1007/s10851-026-01329-2 [paper, repository]

MG-SpaIR: Multi-Grade Sparse-Guided Implicit Representation for Training-Data-Free Image Restoration.

Journal: Journal of mathematical imaging and vision

Authors' code: JingyunLiang/SwinIR (Apache-2.0)

Status: code verified, 7 files readable, 2 matches

[97] doi:10.1016/j.isci.2026.116995 [paper, data]

EEG microstates and dynamic functional connectivity reveal stage-specific brain networks in subjective tinnitus.

Journal: iScience

Status: code on request, 1 dataset cited

[98] doi:10.1038/s41467-026-76141-y [paper, data]

The basolateral amygdala decodes visceral pain and itch via distinct circuits and molecules.

Journal: Nature communications

Status: data only, 1 dataset cited

Wednesday, 29 July 2026 (3 papers)

[99] Code ↔ Paper doi:10.1126/sciadv.aeb3326 [paper, repository]

Insular routing to orbitofrontal cortex enables breathing awareness.

Journal: Science advances

Authors' code: Zenodo 20596487 (CC-BY-4.0), hualouliang/Granger_Geweke_Causality (MIT)

Status: code verified, 6 files readable, 2 matches

[100] Code ↔ Paper doi:10.1126/sciadv.aee8648 [paper, repository]

IoT-enabled wireless neural implant for chronic, programmable neuropharmacology and optogenetics.

Journal: Science advances

Authors' code: Zenodo 20063531 (CC-BY-4.0), jey0920/aee8648_firmware (MIT)

Status: code verified, 6 files readable

[101] doi:10.1016/j.isci.2026.116780 [paper]

The representational geometry of naturalistic textures in macaque V1 and V2.

Journal: iScience

Status: code on request

Tuesday, 28 July 2026 (5 papers)

[102] Code ↔ Paper doi:10.3389/fnins.2026.1873417 [paper, repository]

Functional brain network alterations in a rat model of dental malocclusion.

Journal: Frontiers in neuroscience

Authors' code: CoBrALab/RABIES (other)

Status: code verified, 54 files readable, 4 matches

[103] Code ↔ Paper doi:10.1038/s41467-026-75792-1 [paper, repository]

Temporal drift of sleep-wake representations in hypothalamic neuronal ensembles.

Journal: Nature communications

Authors' code: ZENLabCode (no license), Zenodo 20747987 (CC-BY-4.0), zenlabcode/calciumimaging (no license)

Status: code verified, 8 files readable, 2 matches

[104] Code ↔ Paper doi:10.1038/s41467-026-76106-1 [paper, repository]

Facial expression discrimination emerges from partially overlapping neural subspaces of detection and identity.

Journal: Nature communications

Authors' code: vital-kolab/facial-exp-nhp (no license), Zenodo 20544792 (CC-BY-4.0)

Status: code verified, 14 files readable, 1 match

[105] Code ↔ Paper doi:10.1038/s41467-026-76011-7 [paper, repository]

Human cortex organizes dynamic co-fluctuations along the sensorimotor-association axis.

Journal: Nature communications

Authors' code: zuoxinian/CCS (GPL-2.0), dzjin5678/co-fluctuation-scores (no license), Zenodo 20722002 (CC-BY-4.0)

Status: code verified, 830 files readable, 17 matches

[106] Code ↔ Paper doi:10.1038/s41467-026-76118-x [paper, repository]

Control of associative learning by the mediodorsal thalamus-orbitofrontal cortex circuit.

Journal: Nature communications

Authors' code: Zenodo 21332049 (CC-BY-4.0)

Status: code verified, 22 files readable, 5 matches

Monday, 27 July 2026 (2 papers)

[107] Code ↔ Paper doi:10.1162/netn.a.570 [paper, repository]

Higher-order statistics for constructing centered edge functional connectivity.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Junting-Wang/centered-eFC (no license)

Status: code verified, 7 files readable, 2 matches

[108] Code ↔ Paper doi:10.1162/netn.a.555 [paper, repository]

Neural dynamics of mindfulness training: A longitudinal EEG network analysis of focused attention and open monitoring meditation.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: OSF buxah (no license)

Status: code verified, 2 files readable, 1 match

Friday, 24 July 2026 (3 papers)

[109] Code ↔ Paper doi:10.1371/journal.pcbi.1014521 [paper, repository]

Whisker stimulation reinforces a resting-state network in the barrel cortex: Nested oscillations and avalanches.

Journal: PLoS computational biology

Authors' code: benedetta-mariani (no license)

Status: code verified

[110] Code ↔ Paper doi:10.1371/journal.pcbi.1014563 [paper, repository]

Single pulse electrical stimulation in white matter modulates iEEG visual responses in human early visual cortex.

Journal: PLoS computational biology

Authors' code: hharveygit/SPES_Visual (GPL-3.0)

Status: code verified, 242 files readable, 9 matches

[111] Code ↔ Paper doi:10.1038/s41467-026-75492-w [paper, repository]

Place and behavioral modulation of hippocampal neurons during immobility.

Journal: Nature communications

Authors' code: BurgalossiPublic/HP-BehModulation (no license)

Status: code verified, 19 files readable, 23 matches

Thursday, 23 July 2026 (1 paper)

[112] doi:10.1016/j.isci.2026.116926 [paper]

Organization, neuronal composition, and dynamics of neuronal ensembles in the songbird auditory forebrain.

Journal: iScience

Status: code on request

Wednesday, 22 July 2026 (2 papers)

[113] doi:10.21203/rs.3.rs-10155262/v1 [paper]

Functional Gradients of the Neuraxis: Reorganization from Cortex to Spinal Cord

Journal: Research Square (preprint)

Status: code on request

[114] doi:10.1016/j.isci.2026.116836 [paper]

Layer 1 NDNF interneurons modulate thalamocortical input to the auditory cortex.

Journal: iScience

Status: code on request

Tuesday, 21 July 2026 (4 papers)

[115] Code ↔ Paper doi:10.1038/s41467-026-75347-4 [paper, repository]

Sleep reveals dynamics integrating and segregating movement and stimulus representations in V1.

Journal: Nature communications

Authors' code: cortex-lab/phy (BSD-3-Clause), buzsakilab/buzcode (GPL-3.0), joao-semedo/communication-subspace (MIT), SjulsonLab/deOliveira_Kim_SleepV1_2026 (no license), Zenodo 20024211 (CC-BY-4.0)

Status: code verified, 2,360 files readable, 22 matches

[116] Code ↔ Paper doi:10.1038/s41467-026-75799-8 [paper, repository]

Behaviourally driven closed-loop beta-tACS enhances beta activity and motor behaviour.

Journal: Nature communications

Authors' code: OSF r6phw (no license)

Status: code verified, 7 files readable, 7 matches

[117] doi:10.1016/j.isci.2026.116784 [paper, data]

Age-dependent axonal dysfunctions and altered sharp-wave ripple oscillations in <i>Scn1a</i> <sup><i>+/-</i></sup> mice.

Journal: iScience

Status: code on request, 1 dataset cited

[118] Code ↔ Paper doi:10.1016/j.isci.2026.116825 [paper, repository]

Social hierarchy shapes behavioral and transcriptional responses to chronic stress and ketamine in male mice.

Journal: iScience

Authors' code: LopezLab-KI/Behavioral_analysis_SB (no license), sgoldenlab/simba (BSD-3-Clause)

Status: code verified, 430 files readable, 4 matches

Monday, 20 July 2026 (3 papers)

[119] Code ↔ Paper doi:10.7554/elife.110370 [paper, repository]

Serotonergic modulation of motor subspace dynamics drives a sleep-independent quiescent state.

Journal: eLife

Authors' code: wenquan/BayesianHMDS (MIT), kexin2016/zebrafish-quiescent-state (MIT)

Status: code verified, 61 files readable, 15 matches

[120] Code ↔ Paper doi:10.7554/elife.96084 [paper, repository]

Organization of circuits linking descending input to motor output in the <i>Drosophila</i> Male Adult Nerve Cord connectome.

Journal: eLife

Authors' code: gmcard/Cheong_et_al_2024_eLife (CC-BY-4.0), Zenodo 20532929 (CC-BY-4.0)

Status: code verified, 19 files readable, 16 matches

[121] Code ↔ Paper doi:10.1038/s41467-026-75244-w [paper, repository]

Neural dynamics of temporal interference stimulation monitoring by soft liquid metal interfaces across neural systems.

Journal: Nature communications

Authors' code: codeocean:2937886 (no license)

Status: code found, not verified yet

Friday, 17 July 2026 (2 papers)

[122] doi:10.1002/advs.76661 [paper]

Experience-Dependent Reorganization of Hippocampal CA3 Neuronal Ensembles Associates With Memory Generalization.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[123] doi:10.3389/fnagi.2026.1882681 [paper, data]

Predominantly left-lateralized EEG-EMG associations following gamma-theta stimulation in older adults with mild cognitive impairment.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

Thursday, 16 July 2026 (2 papers)

[124] Code ↔ Paper doi:10.1371/journal.pone.0352897 [paper, repository]

An 8-week jump training did not boost effort value or the willingness to exert effort in a student sample.

Journal: PloS one

Authors' code: OSF acp9d (no license)

Status: empty repository

[125] Code ↔ Paper doi:10.1007/s11571-026-10512-5 [paper, repository]

Modeling the rhythmic complexity of professional drumming with an oscillation-driven reservoir computer.

Journal: Cognitive neurodynamics

Authors' code: magenta.withgoogle.com/datasets/groove (no license), Kawai-Yuji/ODRC_drum (no license)

Status: code verified, 13 files readable, 2 matches

Tuesday, 14 July 2026 (2 papers)

[126] doi:10.1038/s41467-026-75522-7 [paper, data]

High ambient temperature activates a neural circuit for gut glucose uptake in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[127] Code ↔ Paper doi:10.1162/imag.a.1279 [paper, repository]

Multimodal laminar characterization of visual areas along the cortical hierarchy.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: 27-apizzuti/multimodal_layers (no license), 27-apizzuti/meso_motionquartet (no license), ofgulban/segmentator (BSD-3-Clause), figshare 26045911 (CC-BY-4.0)

Status: code verified, 236 files readable, 14 matches

Monday, 13 July 2026 (3 papers)

[128] Code ↔ Paper doi:10.1523/eneuro.0008-26.2026 [paper, repository]

Movement Disorder Patients with Depression Have Altered Corticostriatal Alpha-Beta Power Response to Reward and Loss.

Journal: eNeuro

Authors' code: qhelen/MD-Depression-Reward (no license)

Status: code verified, 9 files readable, 3 matches

[129] Code ↔ Paper doi:10.1016/j.celrep.2026.117646 [paper, repository]

Medial entorhinal-hippocampal desynchronization parallels the emergence of memory impairment in a mouse model of Alzheimer's disease pathology.

Journal: Cell reports

Authors' code: ZachPenn/CellCounting (no license), buzsakilab/buzcode (GPL-3.0), Zenodo 20314327 (GPL-3.0), shumanlab/vetere-et-al-2026-cell-reports (GPL-3.0)

Status: code verified, 2,220 files readable, 14 matches

[130] Code ↔ Paper doi:10.1038/s41467-026-75371-4 [paper, repository]

Cerebellar neural populations orchestrate dopamine reward signaling with single-trial precision.

Journal: Nature communications

Authors' code: leomol/FPA (GPL-3.0), cnchi/HappyML (GPL-3.0), Zenodo 19331923 (CC-BY-4.0)

Status: code verified, 65 files readable, 4 matches

Saturday, 11 July 2026 (2 papers)

[131] Code ↔ Paper doi:10.1186/s12984-026-02041-3 [paper, repository]

Mental tasks induce common modulations of oscillations in cortex and spinal cord.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: neurofreiburg/QuattrocentoLSLApp (GPL-3.0)

Status: code verified, 2,000 files readable

[132] Code ↔ Paper doi:10.1093/nsr/nwag420 [paper, repository]

Constructing mesoscale functionomics by neural dynamics subspace clustering.

Journal: National science review

Authors' code: Cai-yy/FRID (Apache-2.0)

Status: code verified, 21 files readable, 1 match

Friday, 10 July 2026 (3 papers)

[133] Code ↔ Paper doi:10.1371/journal.pcbi.1014434 [paper, repository]

Non-invasive mapping of the temporal processing hierarchy in the human visual cortex.

Journal: PLoS computational biology

Authors' code: kateic/pRFtime (GPL-3.0)

Status: code verified, 8 files readable, 7 matches

[134] Code ↔ Paper doi:10.1126/sciadv.ady6498 [paper, repository]

A prolactin-receptive neural circuit drives maternal interactions with pups in mice.

Journal: Science advances

Authors' code: Zenodo 14254094 (GPL-3.0), Michael-Perkinson/NeuroSyncApp (GPL-3.0)

Status: code verified, 181 files readable

[135] doi:10.1038/s41467-026-75340-x [paper, data]

A circuit linking dentate gyrus and retrosplenial granular cortex regulates fracture healing in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

Wednesday, 8 July 2026 (3 papers)

[136] doi:10.7554/elife.110964 [paper, data]

Medial prefrontal cortex encodes but is not required to generate goal-directed actions under threat.

Journal: eLife

Status: data only, 1 dataset cited

[137] Code ↔ Paper doi:10.3389/fnetp.2026.1869004 [paper, repository]

Cross-wavelet analysis allows obtaining high temporal and frequency resolution in heart rate synchrony analysis.

Journal: Frontiers in network physiology

Authors' code: gitlab.inf.uni-konstanz.de/bernadette.denk/cwp_for_sync_analysis (no license)

Status: code verified, 2 files readable, 3 matches

[138] Code ↔ Paper doi:10.1016/j.bpsgos.2026.100787 [paper, repository]

Dynamic Functional Synchronization Profiles in Autism Differ by Spatial Scale and Along Hierarchical Cortical Gradients.

Journal: Biological psychiatry global open science

Authors' code: gitlab.iit.it/bmp006-public/land_iit/turbulence_abide (no license)

Status: code verified, 16 files readable, 7 matches

Tuesday, 7 July 2026 (2 papers)

[139] doi:10.1093/nc/niag036 [paper, data]

Neurodynamic profiles in the alpha band distinguish different forms of meditation.

Journal: Neuroscience of consciousness

Status: data only, 1 dataset cited

[140] doi:10.1016/j.isci.2026.116628 [paper]

Continuous flash suppression responses in mouse visual cortex: Stimulus laterality and anesthesia effects.

Journal: iScience

Status: code on request

Monday, 6 July 2026 (1 paper)

[141] doi:10.1038/s44324-026-00112-6 [paper]

ATP-depleting spreading depolarizations preferentially originate in the somatosensory cortex during in situ energy deprivation.

Journal: npj metabolic health and disease

Status: code on request

Sunday, 5 July 2026 (1 paper)

[142] Code ↔ Paper doi:10.1113/jp290164 [paper, repository]

Improved subjective sleep quality in older adults by enhancing the GABAergic system in the sensorimotor cortex.

Journal: The Journal of physiology

Authors' code: OSF t75vc (no license)

Status: code found, not verified yet

Saturday, 4 July 2026 (4 papers)

[143] Code ↔ Paper doi:10.1038/s41467-026-75220-4 [paper, repository]

Causal Dynamics of Social Gaze in Primate Prefrontal-Amygdala Networks Revealed by Dynamic Bayesian Modeling.

Journal: Nature communications

Authors' code: pgmpy/pgmpy (MIT), Zenodo 20055775 (CC-BY-4.0)

Status: code verified, 661 files readable, 2 matches

[144] Code ↔ Paper doi:10.1038/s41467-026-74822-2 [paper, repository]

A likelihood-based method for identifying replay from spike sequences.

Journal: Nature communications

Authors' code: figshare 31942599 (CC-BY-4.0)

Status: code verified, 14 files readable, 3 matches

[145] doi:10.3390/biology15131074 [paper]

The Distinct Electrophysiological Mechanisms in the Cortico-Striatal Circuit of LID Rats.

Journal: Biology

Status: code on request

[146] doi:10.1016/j.isci.2026.116598 [paper]

Complementary δ2-protocadherin expression delineates parallel basal ganglia circuits in primates.

Journal: iScience

Status: code on request

Friday, 3 July 2026 (2 papers)

[147] Code ↔ Paper doi:10.7554/elife.109240 [paper, repository]

Neural activity profiles reveal overlapping, intermingled subpopulations spanning area borders in mouse sensorimotor cortex.

Journal: eLife

Authors' code: kaufmanlab/SGK26-public (CC0-1.0)

Status: code verified, 132 files readable, 24 matches

[148] Code ↔ Paper doi:10.7554/elife.108352 [paper, repository]

Analysis of dendritic input currents during place field dynamics.

Journal: eLife

Authors' code: bencefogel/currentscapes-invivo-demo (MIT), bencefogel/currentscapes-simple-model-examples (MIT)

Status: code verified, 73 files readable, 7 matches

Thursday, 2 July 2026 (1 paper)

[149] Code ↔ Paper doi:10.1371/journal.pbio.3003831 [paper, repository]

Disinhibitory signaling enables flexible coding of top-down information in cortical networks.

Journal: PLoS biology

Authors' code: Zenodo 20148662 (CC-BY-4.0)

Status: code verified, 123 files readable, 20 matches

Wednesday, 1 July 2026 (7 papers)

[150] Code ↔ Paper doi:10.1093/brain/awaf426 [paper, repository]

Single-nucleus multiome shows motor neuron glutamate overactivation in amyotrophic lateral sclerosis.

Journal: Brain : a journal of neurology

Authors' code: ertakeuchi/ALS_project (no license)

Status: code verified, 21 files readable, 10 matches

[151] Code ↔ Paper doi:10.1002/hbm.70596 [paper, repository]

Modeled Long-Term Effects of Psilocybin on Dynamic Activity and Effective Connectivity of Fronto-Striatal-Thalamic Circuits.

Journal: Human brain mapping

Authors' code: lollopasquini (no license)

Status: code verified

[152] Code ↔ Paper doi:10.1038/s41467-026-74834-y [paper, repository]

Voltage imaging of CA1 pyramidal cells and SST+ interneurons reveals stability and plasticity mechanisms of spatial firing.

Journal: Nature communications

Authors' code: yoavadamlab (no license)

Status: code verified

[153] Code ↔ Paper doi:10.1038/s41586-026-10671-9 [paper, repository]

Restoring cortical disinhibition improves Huntington's disease phenotypes.

Journal: Nature

Authors' code: Zenodo 20750675 (no license)

Status: dead link

[154] doi:10.1111/ejn.70597 [paper, data]

Superficial Ventral Premotor Pathways to Primary Motor Cortex Shape the Temporal Coordination of Precision Graspinnog.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[155] doi:10.1111/ejn.70615 [paper, data]

Sleep Oscillations Across Cortical, Subcortical and Cerebellar Structures in Magnetoencephalography.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[156] doi:10.1016/j.stemcr.2026.102966 [paper]

Optimized chemogenetic ablation and regeneration of enteric nervous system neurons in zebrafish.

Journal: Stem cell reports

Status: code on request

Monday, 29 June 2026 (3 papers)

[157] Code ↔ Paper doi:10.7554/elife.109717 [paper, repository]

Retrosplenial cortex enables context-dependent goal-directed sensorimotor transformation.

Journal: eLife

Authors' code: LSENS-BMI-EPFL/behavior_control (no license), LSENS-BMI-EPFL/NWB_converter (no license), LSENS-BMI-EPFL/Bech_Dard_process_NWB (no license), LSENS-BMI-EPFL/Bech_Dard_plot_figures (MIT), Zenodo 17424306 (CC-BY-4.0)

Status: code verified, 144 files readable, 21 matches

[158] Code ↔ Paper doi:10.1162/imag.a.1285 [paper, repository]

Individualized mapping of functional brain networks in older adulthood.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DCAN-Labs/compare_matrices_to_assign_networks (other), cjl2007/PFM-Depression (no license)

Status: code verified, 75 files readable, 5 matches

[159] Code ↔ Paper doi:10.3389/fnhum.2026.1820376 [paper, repository]

The neural dynamics of political socio-pragmatic violations: an ERP study.

Journal: Frontiers in human neuroscience

Authors' code: OSF sgbqf (no license)

Status: code verified, 1 file readable, 2 matches

Sunday, 28 June 2026 (1 paper)

[160] Code ↔ Paper doi:10.1177/26331055261460858 [paper, repository]

The Geometric Signatures of Brain State Transitions: Recursive Informational Curvature Reveals Hidden Dynamics in Primate Cortex.

Journal: Neuroscience insights

Authors' code: explorerquantummind/benchmarkecogric (Apache-2.0)

Status: code verified, 39 files readable, 12 matches

Friday, 26 June 2026 (2 papers)

[161] Code ↔ Paper doi:10.1038/s41467-026-74783-6 [paper, repository]

Neural and computational correlates of strategic aborting and long-run policy optimization in the dorsolateral prefrontal cortex.

Journal: Nature communications

Authors' code: ryzhang1/dlPFC-strategic-aborting (Apache-2.0)

Status: code verified, 18 files readable

[162] doi:10.3390/brainsci16070668 [paper, data]

Animate Categories Show Higher Cross-Duration Representational Selectivity in Ventral Occipitotemporal Cortex Under Brief Visual Input.

Journal: Brain sciences

Status: data only, 1 dataset cited

Thursday, 25 June 2026 (2 papers)

[163] Code ↔ Paper doi:10.1038/s41598-026-54110-1 [paper, repository]

An adaptive feature extraction lightweight network for enhanced landslide detection.

Journal: Scientific reports

Authors' code: pryf.github.io/afl-net (no license)

Status: code verified

[164] Code ↔ Paper doi:10.1093/braincomms/fcag245 [paper, repository]

Reduced pre-movement subthalamic beta desynchronization marks motor deficit in Parkinson's disease.

Journal: Brain communications

Authors' code: slowriver322/pMI_BetaDesync_BrainCom (MIT)

Status: code verified, 11 files readable, 6 matches

Wednesday, 24 June 2026 (5 papers)

[165] Code ↔ Paper doi:10.1016/j.cub.2026.05.068 [paper, repository]

An abstract relational map emerges in the human medial prefrontal cortex with consolidation.

Journal: Current biology : CB

Authors' code: alonbaram2/many-maps-alon (no license), alonbaram2/CurrentBiology2026 (no license)

Status: code verified, 1,339 files readable, 10 matches

[166] Code ↔ Paper doi:10.1038/s41467-026-74768-5 [paper, repository]

Parallel cholinergic circuit in oculomotor nucleus to control eye movements and REM sleep.

Journal: Nature communications

Authors' code: codeocean:9306840 (no license), 18810386233/Parallel-circuit-in-oculomotor-nucleus-to-control-eye-movements-and-REM-sleep (MIT), codeocean:7736716 (no license)

Status: code verified, 10 files readable, 2 matches

[167] doi:10.1038/s42003-026-10529-w [paper, data]

Top-down influence of the inferior frontal gyrus on motor cortex excitability during pain empathy.

Journal: Communications biology

Status: code on request, 1 dataset cited

[168] Code ↔ Paper doi:10.1186/s12916-026-05014-4 [paper, repository]

Targeting the posterior thalamic hub: hemispheric-specific encoding of pain-depression comorbidity after hemorrhagic stroke.

Journal: BMC medicine

Authors' code: demianw/tract_querier (BSD-3-Clause)

Status: code verified, 39 files readable

[169] Code ↔ Paper doi:10.3389/fncom.2026.1810942 [paper, repository]

The structural grammar of integration and competition in the human connectome.

Journal: Frontiers in computational neuroscience

Authors' code: aaronclauset.github.io/wsbm (no license)

Status: code verified

Tuesday, 23 June 2026 (3 papers)

[170] Code ↔ Paper doi:10.21203/rs.3.rs-9914946/v1 [paper, repository]

Neural manifolds in spinal networks that orchestrate walking and stopping

Journal: Research Square (preprint)

Authors' code: BergLab/ManifoldsofWalking (GPL-3.0)

Status: code verified, 23 files readable, 2 matches

[171] Code ↔ Paper doi:10.1371/journal.pbio.3003818 [paper, repository]

Human neuronal firing varies with the frequency of local field potential oscillations.

Journal: PLoS biology

Authors' code: Zenodo 19860065 (CC-BY-4.0)

Status: code verified, 2,005 files readable, 1 match

[172] Code ↔ Paper doi:10.1038/s41467-026-74569-w [paper, repository]

Motor cortex directly excites the substantia nigra pars reticulata, the basal ganglia output nucleus.

Journal: Nature communications

Authors' code: wstho/brainblenda (GPL-3.0)

Status: code verified, 5 files readable

Monday, 22 June 2026 (3 papers)

[173] doi:10.1162/imag.a.1281 [paper, data]

Syntactic processing engages the semantic control network.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[174] Code ↔ Paper doi:10.1016/j.ynirp.2026.100376 [paper, repository]

Ambiguity tolerance and resting-state functional connectivity: A preregistered conceptual replication in a Japanese sample.

Journal: Neuroimage. Reports

Authors' code: OSF 84ev5 (no license)

Status: code verified, 7 files readable, 3 matches

[175] Code ↔ Paper doi:10.1093/sleepadvances/zpag065 [paper, repository]

Brain-wide properties of slow waves across vigilance states.

Journal: Sleep advances : a journal of the Sleep Research Society

Authors' code: bushlab-ucl/slowWaveDetection (MIT)

Status: code verified, 5 files readable, 1 match

Saturday, 20 June 2026 (1 paper)

[176] Code ↔ Paper doi:10.1016/j.celrep.2026.117590 [paper, repository]

Impaired behavioral inhibition in Fmr1 KO mice is linked to disrupted visual cortex theta oscillations.

Journal: Cell reports

Authors' code: chubykin/V1-HPC-PFC-Behavior-Oscillations (no license), cortex-lab/allenCCF (no license)

Status: code verified, 91 files readable, 20 matches

Friday, 19 June 2026 (3 papers)

[177] Code ↔ Paper doi:10.1126/sciadv.aed9309 [paper, repository]

Dynamic population coding of kinematic structure across executed and observed actions in primate premotor cortex.

Journal: Science advances

Authors' code: Zenodo 18983284 (CC-BY-4.0)

Status: code verified, 9 files readable, 3 matches

[178] Code ↔ Paper doi:10.1038/s41467-026-74576-x [paper, repository]

Behavioral correlates of Purkinje cell ensemble covariance.

Journal: Nature communications

Authors' code: AbedNashef/Synchrony_paper (no license)

Status: code verified, 43 files readable, 1 match

[179] doi:10.1038/s41598-026-57532-z [paper, data]

Predictability of sleep slow oscillation emergence and spatial extent from pre-onset neural dynamics.

Journal: Scientific reports

Status: code on request, 1 dataset cited

Wednesday, 17 June 2026 (3 papers)

[180] Code ↔ Paper doi:10.1038/s41586-026-10653-x [paper, repository]

A mosaic of whole-body representations on the human precentral gyrus.

Journal: Nature

Authors' code: fwillett/cvVectorStats (MIT), d-r-deo/pcg-mosaic (MIT), cffan/neural_seq_decoder (no license)

Status: code verified, 128 files readable, 25 matches

[181] Code ↔ Paper doi:10.1162/imag.a.1254 [paper, repository]

The individuality of single-frame functional brain connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ccmcinty/The-individuality-of-single-frame-functional-brain-connectivity- (no license)

Status: code verified, 33 files readable, 1 match

[182] doi:10.3389/fncom.2026.1845003 [paper, data]

MsGCN: a multi-stream graph convolutional network for multiband PLV graph fusion in EEG-based biometric identification.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

Tuesday, 16 June 2026 (1 paper)

[183] doi:10.1038/s41467-026-74206-6 [paper, data]

Targeting dopamine transporter for treating social transmission of depression-like behaviors in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

Saturday, 13 June 2026 (1 paper)

[184] doi:10.1021/acsphyschemau.6c00066 [paper, data]

Cholinergic Modulation of Proteinoid Microsphere Networks as Prebiotic Depression Models.

Journal: ACS physical chemistry Au

Status: data only, 1 dataset cited

Friday, 12 June 2026 (4 papers)

[185] Code ↔ Paper doi:10.7554/elife.100642 [paper, repository]

Disrupted hippocampal theta-gamma coupling and spike-field coherence following experimental traumatic brain injury.

Journal: eLife

Authors' code: WolfLabPenn/Adam-eLife_2026 (MIT)

Status: code verified, 16 files readable, 4 matches

[186] Code ↔ Paper doi:10.1073/pnas.2517639123 [paper, repository]

Transformations of the spatial activity manifold convey aversive information in CA3.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: amiguello/aversive_analysis_2025 (no license)

Status: code verified, 7 files readable, 10 matches

[187] Code ↔ Paper doi:10.1038/s41398-026-04140-0 [paper, repository]

Predicting stress response trajectories: Differential contributions of limbic and prefrontal regions to cortisol and affective responses.

Journal: Translational psychiatry

Authors' code: OSF gk6w9 (no license)

Status: code verified, 2 files readable

[188] Code ↔ Paper doi:10.1038/s41467-026-74347-8 [paper, repository]

Compositionality of social gaze in the prefrontal-amygdala circuits.

Journal: Nature communications

Authors' code: changlabneuro/social_gaze_compositionality (no license), Zenodo 20061507 (CC-BY-4.0), qiguangyao/social_gaze_compositionality (no license)

Status: code verified, 27 files readable, 18 matches

Thursday, 11 June 2026 (5 papers)

[189] doi:10.1038/s41467-026-73997-y [paper, data]

Cortex-specific inversion of visual responses during sleep.

Journal: Nature communications

Status: data only, 2 datasets cited

[190] Code ↔ Paper doi:10.1016/j.crmeth.2026.101481 [paper, repository]

A hybrid micro-ECoG for functionally targeted multi-site and multi-scale investigation.

Journal: Cell reports methods

Authors' code: dataverse.harvard.edu/dataverse/hybridecog (no license), Zenodo 20089744 (CC-BY-4.0)

Status: code verified, 24 files readable, 9 matches

[191] Code ↔ Paper doi:10.1038/s41467-026-73999-w [paper, repository]

Independence and coherence in temporal sequence computation across the fronto-parietal network.

Journal: Nature communications

Authors' code: hiroto726/TwinRNN (no license), Zenodo 19907436 (CC-BY-4.0)

Status: code verified, 30 files readable, 4 matches

[192] Code ↔ Paper doi:10.1016/j.isci.2026.116206 [paper, repository]

Gut distension evokes rapid neural dynamics in vagal and hindbrain populations of larval zebrafish.

Journal: iScience

Authors' code: gitlab.oit.duke.edu/ean26/arinel-et-al_2026 (no license), naumann-lab/caimageanalysis (no license), Naumann-Lab/alignment (MIT), Zenodo 20127931 (CC-BY-4.0), Zenodo 20128341 (MIT), arthur-pe/slicetca (MIT)

Status: code verified, 86 files readable, 19 matches

[193] Code ↔ Paper doi:10.1093/braincomms/fcag220 [paper, repository]

When pain becomes self: limbic-default mode network hyperconnectivity predicts microvascular decompression failure in trigeminal neuralgia.

Journal: Brain communications

Authors' code: Zenodo 19106465 (CC-BY-4.0)

Status: code verified, 8 files readable, 5 matches

Wednesday, 10 June 2026 (3 papers)

[194] doi:10.1016/j.isci.2026.116321 [paper]

Chemogenetic activation of the amygdala core nucleus increases aggression in chickens.

Journal: iScience

Status: code on request

[195] doi:10.1016/j.ynirp.2026.100363 [paper]

Narrative coherence shapes functional connectivity in default mode and frontoparietal networks.

Journal: Neuroimage. Reports

Status: code on request

[196] Code ↔ Paper doi:10.3389/fnins.2026.1848222 [paper, repository]

A high-dimensional atlas of parvalbumin interneuron soma morphology in mouse visual and somatosensory cortex.

Journal: Frontiers in neuroscience

Authors' code: OSF 8f2nr (no license)

Status: code verified, 6 files readable, 15 matches

Tuesday, 9 June 2026 (2 papers)

[197] Code ↔ Paper doi:10.1073/pnas.2603966123 [paper, repository]

Oxytocin selectively biases sensory-prefrontal communication through network-level suppression and theta coupling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jeelabKIST/Oxytocin-LFP (no license)

Status: code verified, 10 files readable, 5 matches

[198] doi:10.1038/s41592-026-03125-7 [paper]

Simultaneous two- and three-photon multiplane imaging across cortical layers in freely moving mice.

Journal: Nature methods

Status: code on request

Monday, 8 June 2026 (4 papers)

[199] Code ↔ Paper doi:10.21203/rs.3.rs-9940836/v1 [paper, repository]

Representational Tuning Models: Parametric Encoding Within Arbitrary Stimulus Domains

Journal: Research Square (preprint)

Authors' code: StanBgy/representational_tuning (MIT)

Status: code verified, 79 files readable, 5 matches

[200] Code ↔ Paper doi:10.7554/elife.99278 [paper, repository]

Brain-wide arousal signals are segregated from movement planning in the superior colliculus of the macaque.

Journal: eLife

Authors' code: SmithLabNeuro/nasnet (no license)

Status: code verified, 21 files readable

[201] Code ↔ Paper doi:10.1371/journal.pcbi.1014297 [paper, repository]

Statistics of cortical representational drift can enable robust readout.

Journal: PLoS computational biology

Authors' code: CharlesMicou/heavy-tailed-drift (no license)

Status: code verified, 11 files readable

[202] doi:10.1016/j.ibneur.2026.06.002 [paper, data]

Altered static and dynamic functional network connectivity in Parkinson's disease: A multisite functional magnetic resonance imaging study.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

Saturday, 6 June 2026 (1 paper)

[203] Code ↔ Paper doi:10.1038/s41531-026-01421-9 [paper, repository]

Cortico-pallidal beta dynamics underlie impaired turning in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: openmind-consortium/Analysis-rcs-data (no license)

Status: code verified, 157 files readable

Friday, 5 June 2026 (1 paper)

[204] doi:10.1038/s42003-026-10445-z [paper]

Structure-function coupling of large-scale cortical networks across the lifespan is spectrally specific.

Journal: Communications biology

Status: code on request

Thursday, 4 June 2026 (2 papers)

[205] doi:10.1038/s41398-026-04128-w [paper]

A nucleus accumbens-projecting prefrontal cortex circuit underlies chronic social stress-induced depression-like behaviors.

Journal: Translational psychiatry

Status: code on request

[206] Code ↔ Paper doi:10.1038/s41598-026-55960-5 [paper, repository]

Three-dimensional inversion of gravity data using implicit neural representations and scientific machine learning.

Journal: Scientific reports

Authors' code: Zenodo 19440024 (MIT), pankajkmishra/inrgravity3dinv (MIT)

Status: code verified, 28 files readable, 15 matches

Wednesday, 3 June 2026 (2 papers)

[207] Code ↔ Paper doi:10.1038/s41531-026-01417-5 [paper, repository]

Correlation of thalamic functional organization disturbances and genetic architecture in motor subtypes of Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: OSF gwzhe (no license)

Status: code verified, 1 file readable

[208] Code ↔ Paper doi:10.1016/j.celrep.2026.117446 [paper, repository]

Circuit organization and transcriptomic heterogeneity of sympathetic circuits innervating cranial structures.

Journal: Cell reports

Authors' code: ncbi.nlm.nih.gov/geo/query (no license)

Status: code verified

Tuesday, 2 June 2026 (4 papers)

[209] Code ↔ Paper doi:10.1007/s00415-026-13876-0 [paper, repository]

Functional connectivity dynamics of monoaminergic circuits related to fatigue in multiple sclerosis.

Journal: Journal of neurology

Authors' code: neuroimaging-mug/ms-volest (GPL-3.0), taabroeders/Recon_Dyn_MS (no license), marloesbet/fatigue_dynamics (no license)

Status: code verified, 15 files readable

[210] Code ↔ Paper doi:10.1038/s41398-026-04072-9 [paper, repository]

Myo-inositol concentration in the medial prefrontal cortex is associated with changes in brain white matter microstructure in early psychosis.

Journal: Translational psychiatry

Authors' code: Mic-map/WMTI-Watson_Python (no license)

Status: code verified, 4 files readable, 2 matches

[211] doi:10.3390/s26113498 [paper, data]

Autonomic Signature-Driven Anesthesia Depth Monitoring with Biomimetic Wearable ECG and Knowledge Graph-Augmented Deep Networks.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[212] Code ↔ Paper doi:10.3389/fncom.2026.1786996 [paper, repository]

Schumann-anchored golden ratio organization of human neural oscillations.

Journal: Frontiers in computational neuroscience

Authors' code: neurokinetikz/research (no license), neurokinetikz/schumann (CC-BY-4.0), Zenodo 18828203 (CC-BY-4.0), Zenodo 18728199 (CC-BY-4.0)

Status: code verified, 1,128 files readable, 15 matches

Monday, 1 June 2026 (12 papers)

[213] doi:10.1002/npr2.70113 [paper, data]

Transcranial Calcium Macro-Imaging From the Auditory Cortex of Thy1-Cre-Driven GCaMP8 Transgenic Rats.

Journal: Neuropsychopharmacology reports

Status: data only, 2 datasets cited

[214] Code ↔ Paper doi:10.1016/j.neuron.2026.05.004 [paper, repository]

A learning-evoked slow-oscillatory architecture paces population activity for offline reactivation across the human medial temporal lobe.

Journal: Neuron

Authors' code: Zenodo 10351412 (CC-BY-4.0)

Status: code verified, 5 files readable, 1 match

[215] doi:10.1038/s41593-026-02301-4 [paper, data]

Deep brain stimulation induces white matter remodeling and functional changes to brain-wide networks.

Journal: Nature neuroscience

Status: data only, 2 datasets cited

[216] Code ↔ Paper doi:10.1038/s41592-026-03076-z [paper, repository]

Neuropixels Opto: combining high-resolution electrophysiology and optogenetics.

Journal: Nature methods

Authors' code: spkware/spks (no license), AllenInstitute/MIES (BSD-2-Clause), codeocean.allenneuraldynamics.org/capsule/1593868 (no license)

Status: code verified, 69 files readable, 5 matches

[217] doi:10.1186/s13293-026-00933-6 [paper, data]

Sex differences in activations to the sight of faces, scenes, body parts and tools in visual and non-visual cortical regions leading to the human hippocampus.

Journal: Biology of sex differences

Status: data only, 1 dataset cited

[218] Code ↔ Paper doi:10.1016/j.celrep.2026.117419 [paper, repository]

Conserved role of primary motor cortex in the control of prehension in mice and macaques.

Journal: Cell reports

Authors' code: Zenodo 19615415 (CC-BY-4.0), faparici0/2026_m1_lesion_manuscript (no license)

Status: code verified, 9 files readable

[219] Code ↔ Paper doi:10.1002/hbm.70577 [paper, repository]

Disgust Propensity, Not Disgust Sensitivity, Shapes the Reactivity of a Subjective Disgust Circuit in Humans.

Journal: Human brain mapping

Authors' code: canlab/CanlabCore (GPL-2.0)

Status: code verified, 2,000 files readable, 6 matches

[220] Code ↔ Paper doi:10.1002/hbm.70559 [paper, repository]

Replicability of Functional Brain Networks: A Study Through the Lens of Seven Resting-State Networks.

Journal: Human brain mapping

Authors' code: kaitlyn-fales/FC-Network-Replicability-Effects (GPL-3.0), preprocessed-connectomes-project.org/abide/index.html (no license)

Status: code verified, 27 files readable, 12 matches

[221] Code ↔ Paper doi:10.1002/alz.71587 [paper, repository]

Vulnerability of the locus coeruleus-entorhinal cortex white matter tract in autosomal dominant Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: mrtrix.readthedocs.io (no license)

Status: code verified

[222] doi:10.1002/brb3.71536 [paper]

Altered Dorsolateral Prefrontal Activation in Response to Verbal Fluency Task and Whole-Brain Resting-State Functional Connectivity Strength in Acute Carbon Monoxide Poisoning.

Journal: Brain and behavior

Status: code on request

[223] Code ↔ Paper doi:10.1038/s44220-026-00656-y [paper, repository]

Multiscale heterogeneity of atypical functional connectivity in autism.

Journal: Nature. Mental health

Authors' code: ivaili/MultiscaleHeterogeneity (no license)

Status: code verified, 11 files readable, 3 matches

[224] Code ↔ Paper doi:10.1111/ejn.70582 [paper, repository]

Multifiber Array-Based Photometry System for Multiregional Functional Mapping in the Mouse Brain.

Journal: The European journal of neuroscience

Authors' code: Sakata-Lab/mfaCTpy (GPL-3.0), Sakata-Lab/MFA (GPL-3.0)

Status: code verified, 15 files readable

Friday, 29 May 2026 (5 papers)

[225] Code ↔ Paper doi:10.1371/journal.pbio.3003824 [paper, repository]

Flexible goal learning involves coordinated population activity in dCA1 and medial orbitofrontal cortex.

Journal: PLoS biology

Authors' code: OSF a24pj (no license)

Status: code verified, 19 files readable, 15 matches

[226] Code ↔ Paper doi:10.1126/sciadv.aeb5860 [paper, repository]

The cerebellum implements structured representation of valence to support adaptive behavior control.

Journal: Science advances

Authors' code: Zenodo 18317482 (CC-BY-4.0)

Status: code verified

[227] Code ↔ Paper doi:10.1162/imag.a.1258 [paper, repository]

Non-specific increase in alpha power during a neurofeedback session targeting its downregulation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 6bn4v (no license)

Status: code verified, 21 files readable, 11 matches

[228] Code ↔ Paper doi:10.3389/fnins.2026.1803897 [paper, repository]

Multimodal imaging-based targeting approach for network-level brain stimulation.

Journal: Frontiers in neuroscience

Authors' code: ShahAliR/memoslap-denoising-pipeline (MIT), ShahAliR/NetworkOverlap-Task-RS-fMRI (no license)

Status: code verified, 6 files readable, 4 matches

[229] Code ↔ Paper doi:10.3389/fnsys.2026.1786396 [paper, repository]

Circuit dynamics of binocular conflict in mouse primary visual cortex.

Journal: Frontiers in systems neuroscience

Authors' code: danielmontgomery7/suppression-analysis-code (MIT)

Status: code verified, 127 files readable, 8 matches

Thursday, 28 May 2026 (5 papers)

[230] Code ↔ Paper doi:10.1242/jeb.252069 [paper, repository]

First come, first served: neuronal processing of multi-echo streams in the auditory cortex of echolocating bats.

Journal: The Journal of experimental biology

Authors' code: figshare 30883511 (CC-BY-4.0)

Status: code verified, 4 files readable

[231] Code ↔ Paper doi:10.1016/j.celrep.2026.117420 [paper, repository]

Neural population dynamics of direct electrical stimulation of neocortex.

Journal: Cell reports

Authors' code: denmanlab/am4100_code (MIT), denmanlab/mouse_behavior (no license), denmanlab/estim_populations (GPL-3.0), marcomusy/vedo (MIT)

Status: code verified, 642 files readable, 7 matches

[232] Code ↔ Paper doi:10.1371/journal.pcbi.1013138 [paper, repository]

Hierarchical recurrent temporal prediction as a model of the mammalian dorsal visual pathway.

Journal: PLoS computational biology

Authors' code: sebbkw/hierarchical_temporal_prediction (no license)

Status: code verified, 35 files readable, 8 matches

[233] Code ↔ Paper doi:10.1186/s13024-026-00960-2 [paper, repository]

Temporal single-cell atlas of full-length Huntington's disease mouse model defines stage-specific signatures of corticostriatal dysfunction.

Journal: Molecular neurodegeneration

Authors' code: DavidsonLabCHOP/SPLiT-seq (MIT), DavidsonLabCHOP/Robbins_HDsnRNAseq_2025 (no license)

Status: code verified, 27 files readable, 7 matches

[234] Code ↔ Paper doi:10.1016/j.celrep.2026.117404 [paper, repository]

Action and rest tremor map to distinct networks within the primary motor cortex.

Journal: Cell reports

Authors' code: Calvinwhow/StimPyPer (no license), lead-dbs.org (no license), netstim/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 2 matches

Wednesday, 27 May 2026 (5 papers)

[235] Code ↔ Paper doi:10.1126/sciadv.aeb0404 [paper, repository]

MR-AIV reveals in vivo brain-wide fluid flow with physics-informed AI.

Journal: Science advances

Authors' code: jdtoscano94/MR-AIV (no license)

Status: code verified, 15 files readable, 1 match

[236] Code ↔ Paper doi:10.1038/s41586-026-10537-0 [paper, repository]

Sparse-to-dense coding transformation between hippocampal areas CA3 and CA1.

Journal: Nature

Authors' code: Zenodo 19244015 (CC-BY-4.0)

Status: code verified

[237] doi:10.1038/s41380-026-03640-1 [paper]

Anxiety sensitivity and intolerance of uncertainty track distinct neurobehavioral dimensions of avoidance in anxiety-related disorders.

Journal: Molecular psychiatry

Status: code on request

[238] Code ↔ Paper doi:10.1038/s41598-026-54528-7 [paper, repository]

Enhanced sensorimotor cortex responsiveness to nonplegic hand stimulation and motor network assembly during recovery after spinal cord injury in primates.

Journal: Scientific reports

Authors' code: amwink/bias (GPL-3.0)

Status: code verified, 161 files readable, 3 matches

[239] doi:10.1162/imag.a.1255 [paper, data]

Beta bursts spatiotemporal profiles and their links to hemodynamic responses during movement and rest.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

Tuesday, 26 May 2026 (5 papers)

[240] Code ↔ Paper doi:10.1186/s13148-026-02082-4 [paper, repository]

DNA methylation profiling in Huntington's disease reveals disease associated changes in the striatum.

Journal: Clinical epigenetics

Authors' code: UoE-Dementia-Genomics/HD-DNAmeth (no license)

Status: code verified, 10 files readable, 14 matches

[241] doi:10.1073/pnas.2531920123 [paper, data]

Impact of sex chromosomes and gonad type in stress susceptibility in corticostriatal brain regions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[242] Code ↔ Paper doi:10.1162/imag.a.1237 [paper, repository]

Modelling discrete states and long-term dynamics in functional brain networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OHBA-analysis/Cho2026_DyNeStE (MIT)

Status: code verified, 40 files readable, 36 matches

[243] Code ↔ Paper doi:10.1162/imag.a.1210 [paper, repository]

Modeling 2D spatio-tactile population receptive fields of the fingertip in human primary somatosensory cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Kriaese/manuscript-zoomprf (CC0-1.0), openneuro:ds006128 (no license), OSF 4drz6 (no license)

Status: code verified, 129 files readable, 8 matches

[244] doi:10.1162/imag.a.1253 [paper, data]

Mapping the structural connections between the anterior cingulate cortex and the insula/ventrolateral prefrontal cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

Monday, 25 May 2026 (1 paper)

[245] Code ↔ Paper doi:10.1038/s41593-026-02314-z [paper, repository]

Low-dimensional population dynamics in the brainstem gate REM sleep.

Journal: Nature neuroscience

Authors' code: tortugar/Lab (no license), tortugar/Npx (MIT)

Status: code verified, 37 files readable, 17 matches

Friday, 22 May 2026 (4 papers)

[246] Code ↔ Paper doi:10.7554/elife.109795 [paper, repository]

Sexual dimorphism in sensorimotor transformation of optic flow.

Journal: eLife

Authors' code: HoverflyLab/SampSamp (MIT), doi:10.5061/dryad.tb2rbp0fd (no license)

Status: code verified, 8 files readable

[247] Code ↔ Paper doi:10.1007/s10548-026-01210-w [paper, repository]

Resting-State Theta and Alpha Oscillations in Amputation and Phantom Limb Pain: A Pre-Registered High-Density EEG Study.

Journal: Brain topography

Authors' code: Zenodo 17977343 (CC-BY-4.0)

Status: code verified, 11 files readable, 11 matches

[248] Code ↔ Paper doi:10.1126/sciadv.adv3770 [paper, repository]

Evolution of a central dopamine circuit underlies adaptation of a light-evoked sensorimotor response in the blind cavefish.

Journal: Science advances

Authors' code: doi:10.5061/dryad.02v6wwqg3 (no license), kushalkolar/MESmerize (GPL-3.0)

Status: code verified, 462 files readable, 1 match

[249] Code ↔ Paper doi:10.1038/s42003-026-10319-4 [paper, repository]

Neurons in the bat auditory cortex encode class and complexity of future vocalizations.

Journal: Communications biology

Authors' code: doi:10.12751/g-node.44wmeq (no license)

Status: code verified

Thursday, 21 May 2026 (2 papers)

[250] doi:10.1162/imag.a.1236 [paper, data]

Tactile force evokes a biphasic BOLD response in ipsilateral primary somatosensory cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[251] Code ↔ Paper doi:10.1162/imag.a.1222 [paper, repository]

Network-based near-scalp personalized brain stimulation targets.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ThomasYeoLab/CBIG (MIT), ThomasYeoLab/Kong2026_TMSTree (other)

Status: code verified, 2,024 files readable, 6 matches

Wednesday, 20 May 2026 (2 papers)

[252] doi:10.64898/2026.05.11.26347791 [paper]

Phase-targeted modulation of essential tremor with transcranial magnetic stimulation of motor cortex

Journal: medRxiv (preprint)

Status: code on request

[253] doi:10.1016/j.isci.2026.115998 [paper, data]

Hardwired differences: Sexually dimorphic neural connectomes in the brain-lung axis.

Journal: iScience

Status: code on request, 2 datasets cited

Tuesday, 19 May 2026 (1 paper)

[254] doi:10.1038/s42003-026-10141-y [paper, data]

Directionally biased neuronal responses to pitch-axis vestibular stimulation in larval zebrafish compared to roll-axis responses.

Journal: Communications biology

Status: code on request, 1 dataset cited

Monday, 18 May 2026 (1 paper)

[255] Code ↔ Paper doi:10.1016/j.neuron.2026.04.011 [paper, repository]

Precision fMRI reveals densely interdigitated network patches with conserved motifs in the lateral prefrontal cortex.

Journal: Neuron

Authors' code: GrattonLab/Ladwig-LPFC (no license), evlab.mit.edu/resources-all/download-localizer-tasks (no license), thomasyeolab/cbig (MIT)

Status: code verified, 2,035 files readable, 13 matches

Sunday, 17 May 2026 (1 paper)

[256] Code ↔ Paper doi:10.1038/s41598-026-52253-9 [paper, repository]

Sequential visual stimuli increase high frequency power in the visual cortex.

Journal: Scientific reports

Authors' code: AllenInstitute/ecephys_spike_sorting (BSD-2-Clause)

Status: code verified, 116 files readable, 1 match

Saturday, 16 May 2026 (2 papers)

[257] doi:10.1038/s41398-026-04094-3 [paper]

A depression-like phenotype is associated with discrete defects in the primary hippocampal circuit.

Journal: Translational psychiatry

Status: code on request

[258] Code ↔ Paper doi:10.1038/s42003-026-10250-8 [paper, repository]

Oscillatory network efficiency predicts mood and fatigue during sleep deprivation.

Journal: Communications biology

Authors' code: mathworks.com/help/optim (no license)

Status: code found, not verified yet

Friday, 15 May 2026 (2 papers)

[259] Code ↔ Paper doi:10.1038/s41467-026-73263-1 [paper, repository]

Distributed neural codes of the 3D position in the marmoset frontal cortex and hippocampus.

Journal: Nature communications

Authors' code: XuChunLab/Marmoset3D (no license)

Status: code verified, 46 files readable

[260] Code ↔ Paper doi:10.3390/s26103131 [paper, repository]

Neuromagnetism "On the Cheap": Evaluating a Combined Cylindrical Shield and Partial-Coverage OPM-MEG System for Detecting Sensorimotor Responses in Humans.

Journal: Sensors (Basel, Switzerland)

Authors' code: lyambailey/OPM_MNSBP (BSD-3-Clause)

Status: code verified, 18 files readable, 15 matches

Thursday, 14 May 2026 (2 papers)

[261] Code ↔ Paper doi:10.1371/journal.pbio.3003789 [paper, repository]

Encoding performance of cortical neurons critically depends on their morphological and neurophysiological properties.

Journal: PLoS biology

Authors' code: Anneef/AnTools (GPL-3.0)

Status: empty repository, 2 files readable

[262] doi:10.1016/j.neuroimage.2026.122004 [paper, data]

Preventing visual feedback of the moving limb during grasping preferentially activates parietofrontal premotor areas.

Journal: NeuroImage

Status: data only, 1 dataset cited

Wednesday, 13 May 2026 (1 paper)

[263] Code ↔ Paper doi:10.1007/s10827-026-00936-7 [paper, repository]

When can neuronal activity-dependent homeostatic plasticity maintain circuit-level properties?

Journal: Journal of computational neuroscience

Authors' code: Zenodo 18509900 (bsd-2-clause-netbsd), ljstolting/adhp-maintains-pyloricness (BSD-2-Clause)

Status: code verified, 36 files readable, 2 matches

Tuesday, 12 May 2026 (2 papers)

[264] Code ↔ Paper doi:10.7554/elife.110277 [paper, repository]

Functional imaging of nine distinct neuronal populations under a miniscope in freely behaving animals.

Journal: eLife

Authors' code: Neurocipher/PythonPipeline (no license), MetaCell/Zeiss-Data-Science (MIT)

Status: code verified, 27 files readable, 2 matches

[265] doi:10.1038/s41593-026-02292-2 [paper, data]

Individual differences in prosocial learning are represented in the hippocampal dorsal CA1.

Journal: Nature neuroscience

Status: code on request, 1 dataset cited

Monday, 11 May 2026 (2 papers)

[266] Code ↔ Paper doi:10.1523/eneuro.0032-26.2026 [paper, repository]

Deep Learning Discriminates Seizures from Normal Brain Oscillations in the Electroencephalogram of a Rat Model of Post-traumatic Epilepsy.

Journal: eNeuro

Authors' code: dbarth-tech/ML-seizures (no license)

Status: code verified, 6 files readable

[267] Code ↔ Paper doi:10.1017/s0033291726104309 [paper, repository]

A visual cortex origin of trauma memory intrusions: integrated evidence from TMS and fMRI.

Journal: Psychological medicine

Authors' code: OSF e9zmw (no license)

Status: code verified, 5 files readable

Saturday, 9 May 2026 (1 paper)

[268] Code ↔ Paper doi:10.1038/s41467-026-72934-3 [paper, repository]

Multi-focal ultrasound neuromodulation to the dorsal anterior cingulate cortex disrupts behavioural and neural pain processing.

Journal: Nature communications

Authors' code: OSF vp2gz (no license)

Status: code verified, 3 files readable, 2 matches

Friday, 8 May 2026 (4 papers)

[269] Code ↔ Paper doi:10.1126/sciadv.adv5652 [paper, repository]

The anterior cingulate cortex modulates pupil-linked arousal.

Journal: Science advances

Authors' code: Zenodo 19410291 (CC-BY-4.0)

Status: code verified, 16 files readable, 4 matches

[270] Code ↔ Paper doi:10.1038/s41467-026-72620-4 [paper, repository]

Grid maps are disrupted after large-scale arena expansion and recover with experience.

Journal: Nature communications

Authors' code: hasselmonians/CMBHOME (no license), cnc-ntnu/bnt (MIT), dannenberglab/Tiling-of-large-scaled-environments-by-grid-cells (MIT), Zenodo 19053822 (MIT)

Status: code verified, 1,184 files readable, 8 matches

[271] Code ↔ Paper doi:10.1038/s41398-026-04036-z [paper, repository]

Distinct sensory atypicalities bridge the gap between brain chemistry and motor dysfunction in autism.

Journal: Translational psychiatry

Authors' code: OSF 5unmc (no license)

Status: code verified, 10 files readable, 4 matches

[272] Code ↔ Paper doi:10.1016/j.cub.2026.04.038 [paper, repository]

Ten3-Lphn2-mediated target selection across the extended hippocampal network demonstrates a repeated strategy for circuit assembly.

Journal: Current biology : CB

Authors' code: dpederick/Reciprocal-repulsions-instruct-the-precise-assembly-of-parallel-hippocampal-networks (no license)

Status: code verified, 5 files readable

Thursday, 7 May 2026 (2 papers)

[273] Code ↔ Paper doi:10.1038/s41467-026-72619-x [paper, repository]

An inhibitory brainstem pathway reduces visual detection during background motion.

Journal: Nature communications

Authors' code: xiaolinchou/active-avoidance-task-and-create-spikes-after-Kilosort (no license), Zenodo 18879694 (CC-BY-4.0)

Status: code verified, 2 files readable

[274] Code ↔ Paper doi:10.3389/fnsys.2026.1822122 [paper, repository]

Convergence-divergence circuits for multimodal integration of innate and learned opponent valences.

Journal: Frontiers in systems neuroscience

Authors' code: lmcinnes/umap (BSD-3-Clause), navis-org/navis (GPL-3.0), aplbrain/dotmotif (Apache-2.0), google/neuroglancer (Apache-2.0)

Status: code verified, 1,300 files readable, 8 matches

Wednesday, 6 May 2026 (3 papers)

[275] doi:10.1073/pnas.2537314123 [paper, data]

Incentive valence differentially engages open- and closed-loop basal ganglia circuits during movement initiation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[276] Code ↔ Paper doi:10.1038/s41467-026-72687-z [paper, repository]

Chordless cycle filtrations for dimensionality detection in complex networks via topological data analysis.

Journal: Nature communications

Authors' code: networkgeometry/detecting-dimensionality-TDA-DimNN (no license)

Status: code verified, 46 files readable, 5 matches

[277] Code ↔ Paper doi:10.1038/s41586-026-10458-y [paper, repository]

Specific expansion of motor cortical projections in a singing mouse.

Journal: Nature

Authors' code: singingmicelab/Isko-2026-MAPseq-code (no license)

Status: code verified, 6 files readable, 7 matches

Tuesday, 5 May 2026 (1 paper)

[278] Code ↔ Paper doi:10.1038/s41467-026-72222-0 [paper, repository]

Eye movement kinematics reveal novel circadian organization of sleep substates.

Journal: Nature communications

Authors' code: crheller/saccade-ms (no license)

Status: dead link

Monday, 4 May 2026 (2 papers)

[279] Code ↔ Paper doi:10.1038/s41467-026-72057-9 [paper, repository]

Sex-specific behavioral feedback modulates sensorimotor processing and drives flexible social behavior.

Journal: Nature communications

Authors' code: janclemenslab/socialUMAP (no license), jgraving/DeepPoseKit (Apache-2.0), janclemenslab/das (Apache-2.0), janclemenslab/glm_utils (MIT), lindermanlab/ssm (MIT), lmcinnes/umap (BSD-3-Clause), tommyod/KDEpy (BSD-3-Clause), trevismd/statannotations (MIT), pywavelets.readthedocs.io (no license)

Status: code verified, 365 files readable, 11 matches

[280] doi:10.1038/s41598-026-49359-5 [paper]

A Wilson-Cowan reservoir computer for interpretable spatiotemporal vision.

Journal: Scientific reports

Status: code on request

Sunday, 3 May 2026 (1 paper)

[281] doi:10.1038/s41598-026-49043-8 [paper, data]

Physics-informed Koopman learning approach for fixed-time synchronization of stochastic neural dynamics.

Journal: Scientific reports

Status: data only, 1 dataset cited

Saturday, 2 May 2026 (2 papers)

[282] Code ↔ Paper doi:10.1038/s41531-026-01372-1 [paper, repository]

Varying patterns of association between cortical large-scale networks and subthalamic nucleus activity in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: Kohliver/Subcortical-Cortical-Networks-in-PD (no license), Kohliver/Subcortical-Cortical-Networks-in-PD- (MIT), Zenodo 10401793 (CC-BY-4.0), Zenodo 6875060 (BSD-3-Clause)

Status: code verified, 110 files readable, 6 matches

[283] Code ↔ Paper doi:10.1038/s41598-026-50969-2 [paper, repository]

Disrupted neural response timing and duration during hand movement preparation in schizophrenia spectrum disorder: An fMRI study.

Journal: Scientific reports

Authors' code: Zenodo 15806253 (CC-BY-4.0)

Status: code verified

Friday, 1 May 2026 (2 papers)

[284] Code ↔ Paper doi:10.1093/sleep/zsag030 [paper, repository]

Divergent disruption of brain networks following total and chronic sleep loss: a longitudinal fMRI study.

Journal: Sleep

Authors' code: PatrycjaScislewska/sleep_deprivation_graphs (no license)

Status: code verified, 5 files readable, 10 matches

[285] Code ↔ Paper doi:10.1093/cercor/bhag062 [paper, repository]

Dynamic representations of valence in anterior cingulate cortex in mice.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 19339357 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

Thursday, 23 April 2026 (4 papers)

[286] Code ↔ Paper doi:10.1038/s41467-026-72161-w [paper, repository]

Temporal heterogeneity shapes diffusion dynamics in complex networks.

Journal: Nature communications

Authors' code: ejcorn/connectome_diffusion (MIT), naivefrog0817-chengluo/temporal_diffusion (no license)

Status: code verified, 53 files readable, 1 match

[287] Code ↔ Paper doi:10.1038/s41467-026-72152-x [paper, repository]

Centralized brain networks controlling antennal grooming coordination.

Journal: Nature communications

Authors' code: gizemozd/anipose (BSD-2-Clause), NeLy-EPFL/kinematics3d (Apache-2.0), NeLy-EPFL/antennal-grooming (Apache-2.0)

Status: code verified, 89 files readable, 40 matches

[288] doi:10.1038/s42003-026-10036-y [paper]

Drifting population dynamics with transient resets characterize sensorimotor transformation in the monkey superior colliculus.

Journal: Communications biology

Status: code on request

[289] Code ↔ Paper doi:10.1038/s42003-026-10089-z [paper, repository]

Medial prefrontal cortex neurons integrate amygdala and hypothalamic oxytocin signals to mediate stress-induced social alterations.

Journal: Communications biology

Authors' code: Xulab-SDFMU/mPFC_circuits_Stress_Social (no license)

Status: code verified, 8 files readable, 1 match

Wednesday, 22 April 2026 (5 papers)

[290] doi:10.1126/sciadv.aec6201 [paper, data]

Thalamocortical regulation of prefrontal stability enables abstract rule generalization.

Journal: Science advances

Status: data only, 1 dataset cited

[291] Code ↔ Paper doi:10.1162/netn.a.550 [paper, repository]

Evaluating oscillatory mechanisms underlying flexible neural communication in the human brain.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: vmadanmohan/flex-comm-principles (no license)

Status: code verified, 13 files readable, 6 matches

[292] Code ↔ Paper doi:10.1162/netn.a.549 [paper, repository]

Distributed cortical network dynamics of binocular convergent eye movements in humans.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: colelab.github.io/actflowtoolbox (no license), colelab.github.io/actflowcategories (no license), ColeLab/ColeAnticevicNetPartition (other)

Status: code verified, 35 files readable, 3 matches

[293] doi:10.1162/netn.a.548 [paper]

Phase-dependent stimulation response is shaped by the brain's dynamic functional connectivity.

Journal: Network neuroscience (Cambridge, Mass.)

Status: code on request

[294] Code ↔ Paper doi:10.1016/j.isci.2026.115861 [paper, repository]

Functional organization of dendritic spines in mouse visual cortex layer 2/3 neurons.

Journal: iScience

Authors' code: Zenodo 18552067 (CC-BY-4.0), surlab/jenks_synaptic_organization_of_layer_2-3_neurons_in_mouse_visual_cortex (no license)

Status: code verified

Tuesday, 21 April 2026 (5 papers)

[295] Code ↔ Paper doi:10.7554/elife.109883 [paper, repository]

Prior cocaine use disrupts identification of hidden states by single units and neural ensembles in orbitofrontal cortex.

Journal: eLife

Authors' code: OSF azvhm (no license)

Status: code verified, 216 files readable, 7 matches

[296] Code ↔ Paper doi:10.7554/elife.92805 [paper, repository]

Brain-wide mapping of layer-specific functional connectivity in the human cortex at 3T using draining-vein-suppressed fMRI.

Journal: eLife

Authors' code: welton0411/matlab_sms_recon (MIT)

Status: code verified, 36 files readable, 4 matches

[297] Code ↔ Paper doi:10.1152/jn.00200.2025 [paper, repository]

Flexible integration of natural stimuli by auditory cortical neurons.

Journal: Journal of neurophysiology

Authors' code: kozlovlabcode/flex_integration (no license)

Status: code verified, 7 files readable, 1 match

[298] Code ↔ Paper doi:10.1038/s41467-026-72214-0 [paper, repository]

Auricular vagus nerve stimulation drives analgesia via an auricle-brain axis in a mouse model of neuropathic pain.

Journal: Nature communications

Authors' code: mouseland/facemap (GPL-3.0)

Status: code verified, 85 files readable

[299] Code ↔ Paper doi:10.1162/imag.a.1211 [paper, repository]

Effects of electric field direction on TMS-based motor cortex mapping.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gitlab.gwdg.de/tms-localization/papers/neuron-regression (no license)

Status: code verified, 6 files readable

Monday, 20 April 2026 (2 papers)

[300] Code ↔ Paper doi:10.7554/elife.102309 [paper, repository]

Dimorphic neural network architecture prioritizes sexual-related behaviors in male <i>Caenorhabditis elegans</i>.

Journal: eLife

Authors' code: supp:PMC13095209/elife-102309-code1.zip (no license)

Status: code verified, 1 file readable

[301] Code ↔ Paper doi:10.1016/j.neuron.2026.03.034 [paper, repository]

Dentate gyrus interneurons modulate winner-take-all network dynamics in freely behaving mice.

Journal: Neuron

Authors' code: ThomasHainmueller/HainmuellerHeynold_et_al_2025 (no license), soltesz-lab/DG-Interneurons (GPL-3.0)

Status: code verified, 627 files readable, 40 matches

Saturday, 18 April 2026 (2 papers)

[302] Code ↔ Paper doi:10.1038/s41467-026-71923-w [paper, repository]

Integrating optogenetic fMRI and spatial transcriptomics to reveal circuit-specific gene signatures in fronto- and hippo-thalamic networks.

Journal: Nature communications

Authors' code: wangxiaoqun-lab/opto_fMRI_ST (no license)

Status: code verified, 15 files readable, 2 matches

[303] Code ↔ Paper doi:10.1038/s41467-026-72107-2 [paper, repository]

A midbrain circuit for high-fat-food induced conditioned taste aversion.

Journal: Nature communications

Authors' code: Lizzy-2262/Natcommcode (no license)

Status: code verified, 24 files readable

Friday, 17 April 2026 (5 papers)

[304] doi:10.1371/journal.pbio.3003749 [paper, data]

Somatosensory input drives membrane potential dynamics in motor cortex during voluntary limb movement.

Journal: PLoS biology

Status: data only, 1 dataset cited

[305] Code ↔ Paper doi:10.1126/sciadv.aea1927 [paper, repository]

An evolutionary conserved neural mechanism for interpersonal coordination in primates.

Journal: Science advances

Authors' code: readout.info (no license), Zenodo 18743721 (CC-BY-4.0)

Status: code verified, 23 files readable, 10 matches

[306] doi:10.1038/s41467-026-71640-4 [paper, data]

Neural temporal scaling accounts for robust hunting behavior across temperatures.

Journal: Nature communications

Status: data only, 1 dataset cited

[307] Code ↔ Paper doi:10.1038/s41467-026-71428-6 [paper, repository]

Binding items to contexts through conjunctive neural representations with the method of loci.

Journal: Nature communications

Authors' code: dpmlab/MoL_code (no license), Zenodo 17703712 (CC-BY-4.0)

Status: code verified, 22 files readable, 6 matches

[308] Code ↔ Paper doi:10.1162/imag.a.1188 [paper, repository]

Modelling variability in functional brain networks using embeddings.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OHBA-analysis/Huang2025_ModelVariabilityWithEmbeddings (MIT)

Status: code verified, 29 files readable, 12 matches

Thursday, 16 April 2026 (1 paper)

[309] doi:10.1093/pnasnexus/pgag108 [paper, data]

Aging disrupts the temporal organization of slow oscillations beyond density reduction.

Journal: PNAS nexus

Status: data only, 3 datasets cited

Wednesday, 15 April 2026 (3 papers)

[310] Code ↔ Paper doi:10.1523/jneurosci.0729-25.2026 [paper, repository]

Human Cerebral Blood Flow Activity with Diurnal Variation Differentially Correlated with the Suprachiasmatic Nucleus.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: doi:10.5061/dryad.hx3ffbgtn (no license)

Status: code verified

[311] Code ↔ Paper doi:10.7554/elife.108593 [paper, repository]

A stress-activated neuronal ensemble in the supramammillary nucleus produces anxiety-like behavior in male mice.

Journal: eLife

Authors' code: zjm199502/elife2026 (MIT)

Status: code verified, 2 files readable

[312] Code ↔ Paper doi:10.1126/sciadv.adw3876 [paper, repository]

Intracortical brain-computer interface for navigation in virtual reality in macaque monkeys.

Journal: Science advances

Authors' code: Zenodo 15791186 (MIT), ophelie-bci/ibci_analysis (MIT)

Status: code verified, 30 files readable, 10 matches

Tuesday, 14 April 2026 (1 paper)

[313] Code ↔ Paper doi:10.1038/s41467-026-71051-5 [paper, repository]

Sparseness facilitates image encoding across visuo-frontal networks in freely moving macaque.

Journal: Nature communications

Authors' code: Zenodo 17554171 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

Monday, 13 April 2026 (1 paper)

[314] doi:10.3389/frai.2026.1807209 [paper, data]

A quantum-classical dual-track deep learning network for explainable Parkinson's disease classification.

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

Saturday, 11 April 2026 (2 papers)

[315] doi:10.1186/s12984-026-01985-w [paper, data]

Cortical beta coherence provides a stronger non-invasive predictor of movement vigor than local beta power.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[316] doi:10.3390/ijms27083430 [paper, data]

Metatranscriptomic Reanalysis of Alzheimer's Brains Identifies Low-Biomass Microbial Signals Including Enrichment of <i>Acinetobacter radioresistens</i>.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 10 April 2026 (4 papers)

[317] Code ↔ Paper doi:10.1126/sciadv.aeb5842 [paper, repository]

Regulation of autism-related self-injurious behavior by electrical stimulation of corticostriatal circuits in mice and humans.

Journal: Science advances

Authors' code: lead-dbs.org (no license), CoBrALab/twolevel_ants_dbm (other), CoBrALab/optimized_antsMultivariateTemplateConstruction (other)

Status: code verified, 19 files readable, 2 matches

[318] Code ↔ Paper doi:10.1038/s41467-026-71481-1 [paper, repository]

Sex-specific increased reactivity of the PVT and prolonged PVT→CeA circuit engagement following psilocin administration.

Journal: Nature communications

Authors' code: doi:10.5061/dryad.3ffbg79qr (no license), doi:10.5061/dryad.fbg79cp7b (no license), Zenodo 10082749 (MIT)

Status: code verified, 3 files readable, 2 matches

[319] Code ↔ Paper doi:10.1038/s41593-026-02257-5 [paper, repository]

Neural sequences underlying directed turning in Caenorhabditis elegans.

Journal: Nature neuroscience

Authors' code: flavell-lab/SAAV_Decoding (GPL-3.0), flavell-lab/preprocess_videos (GPL-3.0), flavell-lab/head_detector_unet2d (GPL-3.0), Zenodo 12611760 (MIT)

Status: code verified, 43 files readable, 5 matches

[320] doi:10.1162/imag.a.1202 [paper]

Recurring transient brain-wide co-activation patterns from EEG spatially resembling time-averaged resting-state networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

Thursday, 9 April 2026 (4 papers)

[321] doi:10.1038/s41467-026-71666-8 [paper, data]

Distinct distributed neural dynamics predict pallium-dependent social approach.

Journal: Nature communications

Status: data only, 1 dataset cited

[322] Code ↔ Paper doi:10.1002/advs.202520773 [paper, repository]

Mild Focal Cooling Decouples Dendrites to Reconfigure Cortical Output.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: shulanx1/simpl5pn_temperature_modulation (no license), Zenodo 14020643 (CC-BY-4.0)

Status: code verified, 35 files readable, 2 matches

[323] Code ↔ Paper doi:10.1162/imag.a.1197 [paper, repository]

Blood volume-sensitive laminar fMRI with VASO in human hippocampus: Capabilities and biophysical challenges at clinical 7T scanners.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gitlab.ruhr-uni-bochum.de/neuropsy/vaso_hc (no license)

Status: code verified, 24 files readable, 9 matches

[324] Code ↔ Paper doi:10.1093/braincomms/fcag127 [paper, repository]

Individualized phenotyping of functional amyotrophic lateral sclerosis pathology in sensorimotor cortex.

Journal: Brain communications

Authors' code: avinashkalyani/ALS_PLSr (no license)

Status: code verified, 15 files readable, 11 matches

Wednesday, 8 April 2026 (1 paper)

[325] Code ↔ Paper doi:10.1038/s41467-026-71414-y [paper, repository]

Bed nucleus of the stria terminalis connectivity during food cue and taste processing under stress.

Journal: Nature communications

Authors' code: evaghreins/Gustometer_Stress_BNST_DCM (no license), Zenodo 18738387 (CC-BY-4.0)

Status: code verified, 26 files readable, 9 matches

Tuesday, 7 April 2026 (1 paper)

[326] Code ↔ Paper doi:10.1038/s41593-026-02255-7 [paper, repository]

Neural circuits encode prior knowledge of temporal statistics.

Journal: Nature neuroscience

Authors' code: JorritMontijn/zetatest (GPL-3.0), BarbourLab/lussac (AGPL-3.0), cortex-lab/allenCCF (no license), Zenodo 18434825 (MIT), narainneuro/koppenetal2026 (MIT)

Status: code verified, 2,055 files readable, 13 matches

Monday, 6 April 2026 (2 papers)

[327] Code ↔ Paper doi:10.1371/journal.pcbi.1014123 [paper, repository]

Subunit-specific behavioral modulation of sensory tuning in the visual cortex.

Journal: PLoS computational biology

Authors' code: Mlynarski-Group/behavioral-visual-tuning (no license)

Status: code verified, 2 files readable

[328] Code ↔ Paper doi:10.1038/s41591-026-04287-9 [paper, repository]

An international mega-analysis of psychedelic drug effects on brain circuit function.

Journal: Nature medicine

Authors' code: banilo/BOLD_psychedelics_consortium (no license)

Status: code verified, 2 files readable, 2 matches

Saturday, 4 April 2026 (2 papers)

[329] Code ↔ Paper doi:10.1038/s42003-026-09990-4 [paper, repository]

Head stabilization behavior and underlying circuit mechanisms in larval zebrafish.

Journal: Communications biology

Authors' code: Zenodo 18832196 (CC-BY-4.0)

Status: code verified

[330] Code ↔ Paper doi:10.1016/j.cnp.2026.03.007 [paper, repository]

The impact of Independent Component Analysis on TMS-evoked potentials: a within-subject comparison across motor and prefrontal areas.

Journal: Clinical neurophysiology practice

Authors' code: emiledangremont/TMS-EEG (no license)

Status: code verified, 3 files readable, 2 matches

Friday, 3 April 2026 (6 papers)

[331] doi:10.1038/s41467-026-71046-2 [paper, data]

Enhanced reward coding and condition-independent dynamics in optogenetically identified corticostriatal neurons in monkeys.

Journal: Nature communications

Status: code on request, 1 dataset cited

[332] doi:10.1126/sciadv.adz6495 [paper, data]

Pupil-linked arousal heterogeneously modulates cell-type-specific sensory processing.

Journal: Science advances

Status: data only, 1 dataset cited

[333] Code ↔ Paper doi:10.1038/s41467-026-71357-4 [paper, repository]

Social reward outcompetes drug seeking dopaminergic ensembles to prevent relapse.

Journal: Nature communications

Authors' code: zhoupc/CNMF_E (GPL-3.0), zivlab/CellReg (GPL-2.0), Zenodo 18279500 (CC-BY-4.0)

Status: code verified, 328 files readable, 1 match

[334] doi:10.1038/s41598-026-38002-y [paper]

Tsunami inversion using deep neural representations.

Journal: Scientific reports

Status: code on request

[335] Code ↔ Paper doi:10.1162/imag.a.1185 [paper, repository]

Musical groove listening does not enhance primary motor cortex activation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF fyq8d (no license)

Status: code verified, 60 files readable, 5 matches

[336] doi:10.1162/imag.a.1193 [paper]

Linking local and large-scale salient events with oscillatory and broadband arrhythmic activities in the resting human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

Thursday, 2 April 2026 (3 papers)

[337] doi:10.1038/s41467-026-71289-z [paper, data]

Descending inhibitory rostral ventromedial medulla neurons cause widespread antinociception and contribute to the pain-inhibits-pain phenomenon.

Journal: Nature communications

Status: data only, 1 dataset cited

[338] doi:10.1162/imag.a.1109 [paper]

Simultaneous tDCS-fMRI reveals limited and inconsistent changes in functional connectivity: Insights from a temporal dynamics study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[339] Code ↔ Paper doi:10.1016/j.isci.2026.115564 [paper, repository]

Octopamine regulates neural circuits in the mushroom body and central complex, influencing sleep and arousal.

Journal: iScience

Authors' code: Zenodo 18471737 (CC-BY-4.0), cgoina/pysolo-tools (GPL-3.0)

Status: code verified, 14 files readable

Wednesday, 1 April 2026 (14 papers)

[340] Code ↔ Paper doi:10.1523/eneuro.0423-25.2026 [paper, repository]

Cortically Mediated Muscle Responses to Balance Perturbations Increase with Perturbation Magnitude in Older Adults with and without Parkinson's Disease.

Journal: eNeuro

Authors' code: Neuromechanics-Lab/HOA_PD_SRM (no license)

Status: code verified, 46 files readable, 5 matches

[341] Code ↔ Paper doi:10.1002/hbm.70493 [paper, repository]

Testing for Network Specificity in Brain-Behavior Associations Using Ordinal Dominance Curves.

Journal: Human brain mapping

Authors' code: smweinst/NEST (no license), Nhillman19/NETDOM (no license)

Status: code verified, 27 files readable, 5 matches

[342] Code ↔ Paper doi:10.1007/s10827-026-00927-8 [paper, repository]

Resolving non-identifiability mitigates systematic errors in simultaneous models of neural tuning and functional coupling.

Journal: Journal of computational neuroscience

Authors' code: BouchardLab/neuroerrors (no license)

Status: dead link

[343] Code ↔ Paper doi:10.1371/journal.pcbi.1014112 [paper, repository]

Opposing cortical forces: Alpha slowing and sensorimotor mu acceleration during motor-related BCI training.

Journal: PLoS computational biology

Authors' code: kyriakikostoglou/EKF-Oscillator-Tracking (MIT), graz-bci/EKF-Oscillator-Tracking (MIT)

Status: code verified, 16 files readable, 3 matches

[344] doi:10.1073/pnas.2516293123 [paper, data]

Distinct laminar origins of sensory-evoked high-gamma and low-frequency ECoG signals revealed by optogenetics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[345] Code ↔ Paper doi:10.1038/s41598-026-45192-y [paper, repository]

Cortical firing dynamics during micro-arousals vary with sleep/wake history and micro-arousal duration.

Journal: Scientific reports

Authors' code: nhauglund/automatic-micro-arousal-detection (no license)

Status: empty repository, 1 file readable

[346] Code ↔ Paper doi:10.1038/s41593-026-02232-0 [paper, repository]

Entorhinal cortex represents task-relevant remote locations independently of CA1.

Journal: Nature neuroscience

Authors' code: emilyasterjones/X_maze (MIT), petersaj/AP_histology (GPL-3.0), emilyasterjones/ecephys_spike_sorting (BSD-2-Clause), jenniferColonell/ecephys_spike_sorting (BSD-2-Clause), emilyasterjones/bombcell (GPL-3.0), LorenFrankLab/track_linearization (MIT), Eden-Kramer-Lab/ripple_detection (MIT), emilyasterjones/AeryJones_2025 (GPL-3.0)

Status: code verified, 538 files readable, 19 matches

[347] Code ↔ Paper doi:10.1038/s41586-026-10296-y [paper, repository]

Deconstruction of a spino-brain-spinal cord circuit that drives chronic pain.

Journal: Nature

Authors' code: sites.google.com/view/brain-mapping (no license), thepenglab/posTracker (no license)

Status: code verified, 8 files readable

[348] doi:10.1096/fj.202504243r [paper, data]

Maternal Choline Supplementation in a Mouse Model of Down Syndrome and Alzheimer's Disease Generates Unique Expression Profile Mosaics Within Three Hippocampal Excitatory Neuronal Populations.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[349] Code ↔ Paper doi:10.1111/nyas.70250 [paper, repository]

Structure, Dynamics, and Neural Codes in a Bat Social Network.

Journal: Annals of the New York Academy of Sciences

Authors' code: Zenodo 13938638 (CC-BY-4.0)

Status: code verified

[350] doi:10.1002/hbm.70520 [paper, data]

Bridging Histology and Tractography: First In Vivo Visualization of Short-Range Prefrontal Connections Informed by Primate Tract-Tracing.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[351] doi:10.1111/ejn.70489 [paper, data]

Noninvasive Stimulation of Contralateral Primary Motor Cortex Reduces the Amount of Skill Generalization to the Untrained Arm: Primary Motor Cortex and Intermanual Skill Generalization.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[352] doi:10.1002/brb3.71339 [paper]

Altered Dynamic Functional Connectivity of the Frontoparietal Network in Major Depressive Disorder: Evidence From a Large-Scale Resting-State fMRI Study.

Journal: Brain and behavior

Status: code on request

[353] doi:10.1117/1.nph.13.2.025009 [paper]

Distinct neural signatures of phonemic and semantic verbal fluency: a double dissociation in cortical activation and functional connectivity revealed by fNIRS.

Journal: Neurophotonics

Status: code on request

2025 (3 papers)

[354] Code ↔ Paper doi:10.1371/journal.pcbi.1013007 [paper, repository]

Traveling waves in the human visual cortex: An MEG-EEG model-based approach

Journal: —

Authors' code: Zenodo 13968952 (CC-BY-4.0), LaetitiaG/wavesmodel (no license)

Status: code verified, 22 files readable, 6 matches

[355] Code ↔ Paper doi:10.1038/s41467-025-60860-9 [paper, repository]

Reply to: “Model mimicry limits conclusions about neural tuning and can mistakenly imply unlikely priors”

Journal: —

Authors' code: OSF 65dca (no license)

Status: code verified, 6 files readable

[356] doi:10.1002/hbm.70293 [paper]

Simultaneously Acquired Magnetoencephalography and Diffuse Optical Tomography Data Reveals Correlated Somatosensory Activity

Journal: —

Status: code on request