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Multi-ancestry study of the genetics of problematic alcohol use in over 1 million individuals.

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gabraham/flashpca

License: GPL-3.0
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odelaneau.github.io/shapeit4

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weizhouUMICH/SAIGE

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genetics-statistics/GEMMA

License: GPL-3.0
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bulik/ldsc

License: GPL-3.0
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immunogenomics/cov-ldsc

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brielin/Popcorn

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nlapier2/MsCAVIAR

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hakyimlab/MetaXcan

License: MIT
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thewonlab/H-MAGMA

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bogdanlab/focus

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getian107/PRScsx

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PheWAS/PheWAS

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Tools found in the code: BEDTools, data.table, ggplot2, ggpubr, h5py, Matplotlib, metafor, NumPy, OpenCV, pandas, rpy2, scikit-learn, SciPy, seaborn, statsmodels, tidyverse

Overview

Authors: Hang Zhou, Rachel L. Kember, Joseph D. Deak, Heng Xu, Sylvanus Toikumo, Kai Yuan, Penelope A. Lind, Leila Farajzadeh, Lu Wang, Alexander S. Hatoum, Jessica Johnson, Hyunjoon Lee, Travis T. Mallard, Jiayi Xu, Keira J. A. Johnston, Emma C. Johnson, Trine Tollerup Nielsen, Marco Galimberti, Cecilia Dao, Daniel F. Levey
and 29 other authorsCassie Overstreet, Enda M. Byrne, Nathan A. Gillespie, Scott Gordon, Ian B. Hickie, John B. Whitfield, Ke Xu, Hongyu Zhao, Laura M. Huckins, Lea K. Davis, Sandra Sanchez-Roige, Pamela A. F. Madden, Andrew C. Heath, Sarah E. Medland, Nicholas G. Martin, Tian Ge, Jordan W. Smoller, David M. Hougaard, Anders D. Børglum, Ditte Demontis, John H. Krystal, J. Michael Gaziano, Howard J. Edenberg, Arpana Agrawal, Million Veteran Program, Amy C. Justice, Murray B. Stein, Henry R. Kranzler, Joel Gelernter
Journal: Nature medicine
Published: 7 December 2023
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.1038/s41591-023-02653-5
License: CC BY
Institutions: Yale University (United States), VA Connecticut Healthcare System (United States), Philadelphia VA Medical Center (United States), University of Pennsylvania (United States), Broad Institute (United States), Massachusetts General Hospital (United States), QIMR Berghofer Medical Research Institute (Australia), Queensland University of Technology (Australia), The University of Queensland (Australia), Aarhus University (Denmark), Washington University in St. Louis (United States), Icahn School of Medicine at Mount Sinai (United States), Virginia Commonwealth University (United States), The University of Sydney (Australia), Vanderbilt University Medical Center (United States), University of California San Diego (United States), Statens Serum Institut (Denmark), National Center for Post Traumatic Stress Disorder (United States), Yale New Haven Hospital (United States), Brigham and Women's Hospital (United States), Indiana University Indianapolis (United States), Indiana University School of Medicine (United States), VA San Diego Healthcare System (United States)
Categories: genetics / omics (modality), human (organism), other condition (population)

Data

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Markdown
<!-- oscr-badge:start -->
[![OSCR](https://openscicode.org/badge/doi/10.1038/s41591-023-02653-5.svg)](https://openscicode.org/badge/doi/10.1038/s41591-023-02653-5)
<!-- oscr-badge:end -->
reStructuredText
.. oscr-badge:start

.. image:: https://openscicode.org/badge/doi/10.1038/s41591-023-02653-5.svg
   :target: https://openscicode.org/badge/doi/10.1038/s41591-023-02653-5
   :alt: OSCR

.. oscr-badge:end
HTML
<!-- oscr-badge:start -->
<a href="https://openscicode.org/badge/doi/10.1038/s41591-023-02653-5"><img src="https://openscicode.org/badge/doi/10.1038/s41591-023-02653-5.svg" alt="OSCR"></a>
<!-- oscr-badge:end -->

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