other condition

Population: 935 papers with a page, 407 of them with their authors' code.

Tuesday, 29 September 2026 (1 paper)

[1] doi: [paper, data]

Toward reliable computer-aided brain tumor diagnosis: a contrast-enhanced deep learning approach with hybrid KNN classification

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

Saturday, 26 September 2026 (1 paper)

[2] doi: [paper, data]

NeuroTrustNet: a cost-effective multimodal ensemble framework for brain tumor classification under cross-dataset variability

Journal: Frontiers in artificial intelligence

Status: data only, 4 datasets cited

Sunday, 20 September 2026 (1 paper)

[3] doi:10.5662/wjm.117220 [paper]

Comparison of propofol alone <i>vs</i> propofol-phenylephrine combination for intraoperative hemodynamic stability in glioma surgery.

Journal: World journal of methodology

Status: code on request

Friday, 18 September 2026 (2 papers)

[4] doi:10.1007/s00415-026-14134-z [paper]

What do ALS motor phenotypes measure? A population-based decomposition of their prognostic dimensions.

Journal: Journal of neurology

Status: code on request

[5] doi:10.1080/22221751.2026.2728216 [paper, data]

Triacylglycerol metabolism is a novel target to combat West Nile virus infection.

Journal: Emerging microbes & infections

Status: data only, 1 dataset cited

Wednesday, 16 September 2026 (3 papers)

[6] doi:10.34133/research.1427 [paper]

Altered Hierarchical Visual Rhythm Tracking in Early Deafness.

Journal: Research (Washington, D.C.)

Status: code on request

[7] Code ↔ Paper doi:10.2147/jir.s633117 [paper, repository]

Single-Nucleus Transcriptomic Mapping Reveals Correlative Microglial Changes Associated with rTMS in the Motor Cortex After Spinal Cord Injury.

Journal: Journal of inflammation research

Authors' code: 10XGenomics/cellranger (MIT)

Status: code verified, 789 files readable, 2 matches

[8] doi:10.1371/journal.ppat.1014603 [paper, data]

Analysis of host and viral nascent and steady-state RNA levels in a human neuronal model of herpes simplex virus 1 infection.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

Tuesday, 15 September 2026 (1 paper)

[9] doi:10.1186/s12348-026-00638-2 [paper, data]

Putative mechanisms of ocular inflammation in syphilis.

Journal: Journal of ophthalmic inflammation and infection

Status: data only, 1 dataset cited

Saturday, 12 September 2026 (1 paper)

[10] doi:10.1080/01652176.2026.2720640 [paper, data]

Evaluation of a 0.05 T low-field MRI system for canine brain imaging via comparison with images acquired at 1.5 T field strength: a pilot cadaver study.

Journal: The veterinary quarterly

Status: data only, 2 datasets cited

Friday, 11 September 2026 (2 papers)

[11] doi:10.1155/humu/4225263 [paper, data]

The Charcot-Marie-Tooth Neuropathy (CMTX3) Complex Structural Variation Causes Differential SOX3 Spatiotemporal Expression.

Journal: Human mutation

Status: data only, 1 dataset cited

[12] doi:10.1080/21505594.2026.2721762 [paper, data]

Identification of a mechanical signaling pathway activating type 1 fimbriae via a ZraSR two-component system in neonatal meningitis-associated <i>Escherichia coli</i>.

Journal: Virulence

Status: data only, 2 datasets cited

Thursday, 10 September 2026 (2 papers)

[13] Code ↔ Paper doi:10.1162/imag.a.1363 [paper, repository]

Social approach-avoidance conflict: Behavioural, emotional, and neural correlates along a depression-social anxiety spectrum.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF uq837 (no license)

Status: code verified, 18 files readable, 2 matches

[14] Code ↔ Paper doi:10.1371/journal.pone.0355902 [paper, repository]

Pericyte-derived cancer-associated fibroblasts correlate with poor survival and are enriched after chemoradiotherapy in glioblastoma.

Journal: PloS one

Authors' code: neuropromotion/CAFs-in-glioblastoma-microenvironment (no license)

Status: code verified, 12 files readable, 5 matches

Wednesday, 9 September 2026 (2 papers)

[15] doi:10.1126/sciadv.aeb1237 [paper, data]

Magnetically actuated nanoantennas for wireless glioblastoma therapy.

Journal: Science advances

Status: data only, 1 dataset cited

[16] Code ↔ Paper doi:10.1523/jneurosci.2178-25.2026 [paper, repository]

Increased Attentive Use Is Linked to More Idiosyncratic Functional Connections.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF g42yd (no license)

Status: empty repository

Tuesday, 8 September 2026 (3 papers)

[17] doi:10.1016/j.isci.2026.117476 [paper]

Integrated 3D light sheet and 2D multiplex imaging for deep histological characterization of somatic mouse glioblastoma.

Journal: iScience

Status: code on request

[18] doi:10.1002/advs.77551 [paper]

Targeting the KAT7/H3K14ac/RAC2 Axis Mediates OXPHOS to Promote Stemness Maintenance and Malignancy in Glioblastoma.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[19] doi:10.1073/pnas.2604933123 [paper, data]

Neuromotor modules revealed by direct electrical stimulation of the human primary motor cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

Sunday, 6 September 2026 (1 paper)

[20] Code ↔ Paper doi:10.1002/mco2.70980 [paper, repository]

An Intraoperative EEG Biomarker for Postoperative Delirium Predicting Based on Interpretable Deep Learning Framework.

Journal: MedComm

Authors' code: ncclab-sustech/POD-biomarker (no license)

Status: code verified, 14 files readable, 8 matches

Saturday, 5 September 2026 (1 paper)

[21] Code ↔ Paper doi:10.21769/bioprotoc.5801 [paper, repository]

Quantitative Analysis of Axonal Degeneration and TDP-43 Aggregation in Compartmentalized Human iPSC-Derived Motor Neuron-Myotube Co-cultures.

Journal: Bio-protocol

Authors' code: PerlsonLab/Bioprotocol (MIT)

Status: code verified, 4 files readable

Friday, 4 September 2026 (2 papers)

[22] Code ↔ Paper doi:10.17912/micropub.biology.002204 [paper, repository]

Against All Odds: Computational Screening Via Machine Learning Ranking and Generation of Antibody Candidates for Creutzfeldt-Jakob Disease.

Journal: microPublication biology

Authors' code: Axy-lis/CJD_ML_AAO (no license)

Status: dead link

[23] doi:10.3389/fonc.2026.1928589 [paper, data]

LiteFreqMamba:lightweight frequency-enhanced Mamba for efficient 3D brain tumor segmentation.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

Thursday, 3 September 2026 (2 papers)

[24] doi:10.3389/fpsyg.2026.1911950 [paper, data]

The spacing words and pseudowords reading test: normative data to measure peripheral acquired dyslexia in the Italian adult population.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[25] Code ↔ Paper doi:10.7554/elife.109104 [paper, repository]

Complementary vertebrate <i>Wac</i> models exhibit phenotypes relevant to DeSanto-Shinawi Syndrome.

Journal: eLife

Authors' code: nordneurogenomicslab/publications (no license)

Status: code verified, 14 files readable, 3 matches

Wednesday, 2 September 2026 (2 papers)

[26] doi:10.1038/s41398-026-04401-y [paper]

Longitudinal brain dynamics and prediction of craving changes in individuals with methamphetamine use disorder.

Journal: Translational psychiatry

Status: code on request

[27] Code ↔ Paper doi:10.1038/s41467-026-77302-9 [paper, repository]

Identification and validation of central amygdala FGFR1 as a therapeutic target for alcohol use disorder using single-nucleus sequencing in rats.

Journal: Nature communications

Authors' code: leohog/Fgfr1_analysis (MIT)

Status: code verified, 3 files readable, 4 matches

Tuesday, 1 September 2026 (13 papers)

[28] doi:10.1111/jon.70146 [paper]

Pitfalls in 2HG Detection With TE-Optimized MRS at 3T.

Journal: Journal of neuroimaging : official journal of the American Society of Neuroimaging

Status: code on request

[29] doi:10.1111/cbdd.70396 [paper, data]

Integrated Multi-Omics and Radiogenomic Analysis Identifies S100B and ITGB5 as Complementary Candidate Biomarkers of Glioblastoma Heterogeneity.

Journal: Chemical biology & drug design

Status: code on request, 1 dataset cited

[30] Code ↔ Paper doi:10.1021/acs.jcim.6c01299 [paper, repository]

Targeting BCL-2 through Deep Learning-Based Drug Repurposing: A Multimodal Approach Combining Diffusion-Based Generative Modeling, Neural Relational Inference, and In Vitro Validation.

Journal: Journal of chemical information and modeling

Authors' code: DurdagiLab/Neuralplexer_Ligand_Scoring (MIT), DurdagiLab/Automate-Neural-relational-inference-NRI- (MIT)

Status: code verified, 17 files readable, 1 match

[31] Code ↔ Paper doi:10.1093/braincomms/fcag334 [paper, repository]

Functional and effective connectivity alterations relate to cognitive performance in aquaporin-4 antibody-positive neuromyelitis optica spectrum disorder.

Journal: Brain communications

Authors' code: pzeidman/dcm-peb-example (no license)

Status: code verified, 7 files readable, 2 matches

[32] doi:10.1111/adb.70188 [paper]

Classification of Adolescent Drinking via Behavioral, Biological and Environmental Variables: A Machine Learning Approach With Bias Control.

Journal: Addiction biology

Status: code on request

[33] doi:10.1096/fj.202504890rr [paper, data]

Purinergic Receptor P2Y2 Regulates Neurogenesis and Functional Recovery Following Spinal Cord Injury in Zebrafish.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[34] Code ↔ Paper doi:10.1186/s40478-026-02415-7 [paper, repository]

A standardized framework resolves ambiguity in motor neuron loss across neurodegenerative diseases.

Journal: Acta neuropathologica communications

Authors' code: a-l-norman/SMN-delta-7-meta-analysis-R-code (no license), GerstnerF/Counting-Simulation (no license)

Status: code verified, 4 files readable

[35] Code ↔ Paper doi:10.1371/journal.pbio.3003979 [paper, repository]

Impaired midfrontal‑motor theta phase synchronization characterizes maladaptive motivational behavior in people with obsessive‑compulsive disorder.

Journal: PLoS biology

Authors' code: Zenodo 21964069 (MIT), yupang11/motivational-biases-in-ocd (MIT)

Status: code verified, 115 files readable, 12 matches

[36] doi:10.1002/brb3.71701 [paper, data]

POFUT1 Serves as an Independent Prognostic Factor and Therapeutic Target by Activating the PI3K/AKT Pathway in Glioma.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[37] doi:10.1002/cam4.72199 [paper, data]

Evaluation of the Expression and Prognosis of Neural-Related Products Expressed by Cancer-Derived Mesenchymal Stem Cells With the Characteristics of Neural Stem Cells.

Journal: Cancer medicine

Status: data only, 1 dataset cited

[38] doi:10.1093/brain/awag043 [paper, data]

Cytomegalovirus-induced T cell responses accelerate Alzheimer's disease progression in mice.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[39] Code ↔ Paper doi:10.1093/neuonc/noag128 [paper, repository]

Spatially-resolved single-cell imaging of melanoma brain metastases identifies localized immune patterns predictive of immune checkpoint blockade response.

Journal: Neuro-oncology

Authors' code: BodenmillerGroup/steinbock (MIT), StefanosVoglis/Voglis_et_al_2026_Neuro-Oncology (no license)

Status: code verified, 92 files readable, 18 matches

[40] Code ↔ Paper doi:10.1093/neuonc/noag119 [paper, repository]

Single-nucleus profiling of postmortem diffuse midline gliomas identifies mitochondrial biogenesis as a resistance mechanism to imipridone therapy.

Journal: Neuro-oncology

Authors' code: CancerGenomicsLab/DMG_ONC201 (MIT)

Status: code verified, 9 files readable, 2 matches

Monday, 31 August 2026 (6 papers)

[41] Code ↔ Paper doi:10.1007/s10237-026-02121-2 [paper, repository]

Dynamic image-informed selection of biomechanical tumor growth models.

Journal: Biomechanics and modeling in mechanobiology

Authors' code: PCELab/RecursiveGliomaInference (no license)

Status: code verified, 5 files readable, 1 match

[42] Code ↔ Paper doi:10.1093/narcan/zcag021 [paper, repository]

Multi-omic cell free DNA profiles of cerebral spinal fluid from lung cancer metastasis to the brain.

Journal: NAR cancer

Authors' code: Tianqi-Kiki/nanopore_CSF_cfDNA (MIT), Zenodo 20173042 (MIT)

Status: code verified, 14 files readable, 7 matches

[43] doi:10.3390/ijms27177801 [paper, data]

Expression of the Human R163C-<i>RYR1</i> Gain-of-Function Mutation Modified 2,2',3,5',6-Pentachlorobiphenyl (PCB 95) Developmental Neurotoxicity in Weanling Mice.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[44] doi:10.3390/diagnostics16172806 [paper]

Brain Tumor Segmentation and Grading on MRI Using Deep Learning: A Systematic Literature Review and Benchmark-Driven Comparative Analysis.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request

[45] doi:10.3389/frai.2026.1849571 [paper, data]

NeuroPlast: a learnable activation function evaluated under knowledge distillation for medical image classification.

Journal: Frontiers in artificial intelligence

Status: data only, 4 datasets cited

[46] doi:10.3389/fmed.2026.1905061 [paper, data]

Performance trade-offs between dense prediction and sparse query mechanisms for brain tumor MRI detection: a comparative study of YOLOv8 and RT-DETR.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

Saturday, 29 August 2026 (2 papers)

[47] Code ↔ Paper doi:10.1016/j.ebiom.2026.106457 [paper, repository]

Balancing privacy and performance: the impact of facial defacing on AI in medical imaging.

Journal: EBioMedicine

Authors' code: YuliWanghust/deface_nih (no license)

Status: empty repository, 1 file readable

[48] Code ↔ Paper doi:10.1038/s41467-026-77170-3 [paper, repository]

DNA methylation profiling identifies long-range epigenetic silencing of clustered protocadherins as a key determinant of meningioma progression.

Journal: Nature communications

Authors' code: MerkLabHIH/Meningioma_DNA_methylation_project (no license)

Status: code verified, 13 files readable, 22 matches

Friday, 28 August 2026 (3 papers)

[49] Code ↔ Paper doi:10.1126/sciadv.aee4940 [paper, repository]

Neuron-derived SPP1 instructs microglia to limit degeneration.

Journal: Science advances

Authors' code: doi:10.7910/dvn/wj0mji (no license)

Status: code found, not verified yet

[50] Code ↔ Paper doi:10.1038/s41598-026-61605-4 [paper, repository]

Learning precise segmentation of neurofibrillary tangles from rapid manual point annotations.

Journal: Scientific reports

Authors' code: keiserlab/tangle-tracer (MIT)

Status: code verified, 31 files readable, 16 matches

[51] doi:10.3389/fneur.2026.1889514 [paper]

Acute prefrontal hemodynamic responses to Xingnao Kaiqiao acupuncture in healthy participants and patients with prolonged disorders of consciousness.

Journal: Frontiers in neurology

Status: code on request

Thursday, 27 August 2026 (2 papers)

[52] doi:10.21037/tcr-2026-0404 [paper, data]

A cuproptosis-related lncRNAs-based risk signature for predicting prognosis and immune status in glioma.

Journal: Translational cancer research

Status: data only, 1 dataset cited

[53] doi:10.3390/ijms27177675 [paper, data]

LncRNA Gas5, a Target of the Nonsense-Mediated Decay Pathway in the Brain, Regulates Neuroinflammation and Neurodegenerative Disease Pathways in a Tauopathy Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Wednesday, 26 August 2026 (5 papers)

[54] doi:10.1186/s42492-026-00230-4 [paper, data]

Hierarchical two-stage ensemble of dilated U-net models for brain tumor segmentation.

Journal: Visual computing for industry, biomedicine, and art

Status: data only, 1 dataset cited

[55] doi:10.1038/s41467-026-76468-6 [paper, data]

Cell autonomous regional differences in oligodendrocyte lineage development and responses to oncohistone H3.3 K27M.

Journal: Nature communications

Status: data only, 2 datasets cited

[56] Code ↔ Paper doi:10.1162/imag.a.1347 [paper, repository]

Neural and behavioural correlates of theory of mind reasoning in five-year-old children born preterm.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: hrichardsonlab/fmri-analysis (no license), OSF xtyu8 (no license)

Status: code verified, 49 files readable, 12 matches

[57] Code ↔ Paper doi:10.1016/j.nicl.2026.104052 [paper, repository]

Beyond one-to-one mappings: Modelling distributed lesion-symptom relationships with multilayer networks.

Journal: NeuroImage. Clinical

Authors' code: jdax34/scripts_article (no license)

Status: code verified, 11 files readable, 8 matches

[58] Code ↔ Paper doi:10.3389/fped.2026.1912111 [paper, repository]

Serial amplitude-integrated electroencephalography trajectories and brain-injury-associated functional immaturity in extremely preterm infants.

Journal: Frontiers in pediatrics

Authors' code: MdXuDeKai/AEEG (MIT)

Status: empty repository, 1 file readable

Tuesday, 25 August 2026 (5 papers)

[59] Code ↔ Paper doi:10.2196/84707 [paper, repository]

Wireless Electroencephalography in Research on Children With Developmental Disabilities: Scoping Review.

Journal: Journal of medical Internet research

Authors' code: Zenodo 21633946 (CC-BY-4.0)

Status: code verified

[60] doi:10.1016/j.isci.2026.117335 [paper, data]

Coincidence of L1 retrotransposition and DNA repair deficiency elicits synthetic lethality in S-phase mature neurons.

Journal: iScience

Status: code on request, 1 dataset cited

[61] Code ↔ Paper doi:10.3389/fneur.2026.1812084 [paper, repository]

Prognostic assessment of comatose patients after cardiac arrest: construction of a simplified monitoring EEG risk score across different time windows.

Journal: Frontiers in neurology

Authors' code: ShengYH2001/Simplified-EEG-Risk-Score (MIT)

Status: empty repository, 1 file readable

[62] doi:10.3389/fped.2026.1891438 [paper, data]

Identification and clinical validation of F3 as a peripheral blood biomarker for neonatal hypoxic-ischemic encephalopathy using dataset-specific bioinformatics analysis.

Journal: Frontiers in pediatrics

Status: data only, 1 dataset cited

[63] Code ↔ Paper doi:10.1162/netn.a.572 [paper, repository]

Functional connectivity is linked to symbolic BOLD patterns: Replication, extension, and clinical application of the human "Complexome".

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: OSF mr8f7 (no license), OSF wjua7 (no license)

Status: code verified, 14 files readable, 12 matches

Monday, 24 August 2026 (4 papers)

[64] Code ↔ Paper doi:10.1016/j.xpro.2026.104801 [paper, repository]

Protocol to characterize tumor microenvironment in a diffuse midline glioma mouse model using multi-omics approach on sequential sections.

Journal: STAR protocols

Authors' code: conda-forge/miniforge (BSD-3-Clause), Zenodo 21513336 (MIT)

Status: code verified, 14 files readable

[65] doi:10.1038/s41598-026-60525-7 [paper, data]

Superfast prediction of brain tumours through adaptive incremental pre-training and re-training through transfer learning using state-of-the-art ResNet18 architectural model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[66] doi:10.1007/s12035-026-06127-w [paper, data]

Disrupting fzd9b in Zebrafish Recapitulates Stress- and Anxiety-Like Behaviours Relevant to Williams Syndrome.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[67] doi:10.3389/fonc.2026.1927290 [paper, data]

Arylsulfatase D promotes malignant phenotypes in glioblastoma cells and is linked to altered Hippo pathway phosphorylation.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

Sunday, 23 August 2026 (1 paper)

[68] doi:10.3390/ijms27177542 [paper, data]

Assessment of the Association of Periodontitis and Diabetes Mellitus with Alzheimer's Disease in a Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 22 August 2026 (3 papers)

[69] Code ↔ Paper doi:10.1186/s13244-026-02365-7 [paper, repository]

Super-resolution MRI and 2.5D deep learning for intratumoral-peritumoral radiomics in preoperative prediction of rectal cancer perineural invasion.

Journal: Insights into imaging

Authors' code: OnekeyAI-Platform/onekey (no license)

Status: code verified, 62 files readable, 3 matches

[70] doi:10.1186/s13073-026-01745-4 [paper, data]

The clinical and molecular spectrum of AGO2-associated Lessel-Kreienkamp neurodevelopmental syndrome.

Journal: Genome medicine

Status: data only, 2 datasets cited

[71] Code ↔ Paper doi:10.3390/jcm15176501 [paper, repository]

Saliency-Curated Deep Learning for Predicting Receptor Status in Breast Cancer Brain Metastases.

Journal: Journal of clinical medicine

Authors' code: Const1357/BCBM-RadioGenomics-Classifier (no license)

Status: code verified, 17 files readable, 12 matches

Friday, 21 August 2026 (4 papers)

[72] doi:10.1186/s40478-026-02402-y [paper, data]

Overactivation of SHH signaling induces a cascade of dedifferentiation and oncogenesis in a new mouse model for choroid plexus carcinoma.

Journal: Acta neuropathologica communications

Status: data only, 5 datasets cited

[73] Code ↔ Paper doi:10.1016/j.isci.2026.117281 [paper, repository]

Spatial pattern-driven interpretable model and biological correlates in brain glioblastoma-lymphoma differentiation.

Journal: iScience

Authors' code: JLhos-fmri/SPLSM_version1.0 (GPL-3.0), JLhos-fmri/ClinicalFrequencyAnalysisToolkit (GPL-3.0), rpomponio/neuroHarmonize (MIT)

Status: code verified, 95 files readable, 2 matches

[74] doi:10.1038/s41467-026-77016-y [paper, data]

YTHDC1 functions as a molecular chaperone to suppress ALS-linked hnRNPA1 mutants from aggregation.

Journal: Nature communications

Status: data only, 2 datasets cited

[75] doi:10.1016/j.omta.2026.201835 [paper]

Base editing rescues a hereditary motor neuron disease in mouse and patient-derived iPSC organoid models.

Journal: Molecular therapy. Advances

Status: code on request

Thursday, 20 August 2026 (4 papers)

[76] Code ↔ Paper doi:10.1371/journal.pone.0354614 [paper, repository]

Evaluating the performance of EEG based on ANN to predict the effectiveness of tDCS combined evaluative conditioning on obsession symptoms reduction in contamination OCD patients: Secondary analysis of data from a randomized controlled trial.

Journal: PloS one

Authors' code: supp:PMC13492803/pone.0354614.s002.zip (no license)

Status: empty repository

[77] doi:10.1162/imag.a.1343 [paper]

Metabolic connectivity alterations in amyotrophic lateral sclerosis: Individual network analysis based on Wasserstein distances.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[78] doi:10.3389/fimmu.2026.1911726 [paper, data]

Identification of interleukin-11 as a comorbid risk factor for prostate cancer and Alzheimer's disease using integrated bioinformatics and machine learning.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[79] Code ↔ Paper doi:10.1038/s41467-026-76837-1 [paper, repository]

Drug screen and machine learning predict neuroprotective agents in a preclinical human model of childhood dementia.

Journal: Nature communications

Authors' code: jacobgil/pytorch-grad-cam (MIT), bardylab/MPSIIIA_snRNAseq_DrugScreen_Paper_2026 (no license), bardylab/MPSIIIA_Machine_Learning_DrugScreen_Paper_2026 (no license), bardylab/MPSIIIA_snRNA-seq_DrugScreen_Paper_2026 (no license)

Status: code verified, 84 files readable, 23 matches

Wednesday, 19 August 2026 (4 papers)

[80] Code ↔ Paper doi:10.3390/brainsci16080883 [paper, repository]

Anxiety and Depression Traits Are Moderated by a Sex-Dependent Genetic Interaction Between 5-HTTLPR and BDNF.

Journal: Brain sciences

Authors' code: LorenzoOdierna/AnxDepStudy5-HTTLPRBDNFSex (no license)

Status: empty repository

[81] doi:10.3390/jcm15166418 [paper, data]

Beyond Accuracy: A Controlled Comparative Glaucoma Screening Benchmark Across Deep Learning and Hybrid Models Under Within- and Cross-Dataset Conditions.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[82] doi:10.1016/j.isci.2026.117247 [paper, data]

Brain assembloids reveal efficacy and off target effects in high grade glioma brain cancer.

Journal: iScience

Status: code on request, 1 dataset cited

[83] doi:10.3389/fncel.2026.1894226 [paper, data]

Boldine treatment prevents chronic cognitive impairment and exaggerated fear learning in rats exposed to repetitive low-level blast injury.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

Tuesday, 18 August 2026 (8 papers)

[84] doi:10.1007/s10143-026-04450-3 [paper]

Sarcopenic obesity and cachexia as nutritional risk phenotypes and histology-specific outcomes after intracranial tumor resection: a histology-stratified NSQIP analysis of 27,057 cases.

Journal: Neurosurgical review

Status: code on request

[85] doi:10.1080/20008066.2026.2709174 [paper, data]

Exploring the shared genetic architecture between post-traumatic stress disorder (PTSD) and obstructive sleep apnea (OSA).

Journal: European journal of psychotraumatology

Status: data only, 1 dataset cited

[86] doi:10.7554/elife.110458 [paper, data]

TLR4 signaling drives tissue inflammation, Claudin-5 internalization, and vascular barrier breakdown in a mouse model of neonatal meningitis.

Journal: eLife

Status: data only, 1 dataset cited

[87] Code ↔ Paper doi:10.1371/journal.pone.0356382 [paper, repository]

Evaluating the impact of segmentation strategies on radiomic feature stability for paediatric brain tumour diagnosis using diffusion weighted imaging.

Journal: PloS one

Authors' code: tmulvanyAC/ADC_Radiomic_Stability (no license)

Status: code verified, 2 files readable, 1 match

[88] Code ↔ Paper doi:10.1073/pnas.2603853123 [paper, repository]

A nose-to-brain circuit underlies anxiety regulation by nasal afferent frequency in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 33136013 (CC-BY-4.0)

Status: code verified, 20 files readable

[89] doi:10.1016/j.xcrm.2026.102994 [paper, data]

Targeting of tripartite neuron-cancer-immune cell crosstalk augments response to chemotherapy and immunotherapy.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[90] Code ↔ Paper doi:10.1093/braincomms/fcag316 [paper, repository]

Structural, functional and neurochemical imaging mapping of non-motor symptoms in Parkinson's disease.

Journal: Brain communications

Authors' code: chiaracamastra/Coordinate-based-network-mapping (no license)

Status: empty repository, 1 file readable

[91] doi:10.3389/frai.2026.1812932 [paper, data]

Bridging global context and local precision using a disagreement-based region specific ensemble of Swin UNETR and SegResNet for 3D glioma segmentation.

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

Monday, 17 August 2026 (3 papers)

[92] Code ↔ Paper doi:10.1093/braincomms/fcag317 [paper, repository]

Deep learning segmentation of paediatric brain tumours using diffusion-weighted MRI: towards an early, <i>in vivo</i> classification pipeline.

Journal: Brain communications

Authors' code: tmulvanyAC/DWI_DeepMedic (no license)

Status: code verified, 1 file readable

[93] Code ↔ Paper doi:10.3390/life16081352 [paper, repository]

Linking Embodiment, Simulator Sickness, and EEG Activity During XR-BCI Use: A Single-Participant Case Study.

Journal: Life (Basel, Switzerland)

Authors' code: OSF 9hmxj (no license)

Status: code verified, 1 file readable

[94] doi:10.31083/ap51694 [paper, data]

Imatinib-Induced Changes in Anxiety-Like Behaviors are Associated With Prefrontal Cortical Metabolic Remodeling in Mice.

Journal: Alpha psychiatry

Status: data only, 1 dataset cited

Saturday, 15 August 2026 (1 paper)

[95] doi:10.1002/advs.76803 [paper, data]

ICOS-ImmunoPET Monitors T Cell Activation After Combination Immune Checkpoint Blockade in a Mouse Model of Melanoma Brain Metastasis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

Friday, 14 August 2026 (6 papers)

[96] Code ↔ Paper doi:10.1002/advs.77075 [paper, repository]

BraMARS: An Interpretable Histopathology-Driven Deep Learning Model for Brain Metastasis Risk Stratification in Surgically Resected Limited-Stage SCLC.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: ZhoulabCPH/BraMARS (no license)

Status: code verified, 8 files readable, 3 matches

[97] Code ↔ Paper doi:10.1186/s44477-026-00045-w [paper, repository]

Proteomic analysis of human chronic traumatic encephalopathy brain implicates proteasome and ribosome dysfunction in disease severity.

Journal: Molecular neurodegeneration advances

Authors' code: BU-Neuromics/cte-proteomics-2026 (no license)

Status: code verified, 10 files readable, 9 matches

[98] doi:10.1016/j.isci.2026.117207 [paper]

Physical activity stimulates neurogenesis via sensory neuron activity in postembryonic zebrafish.

Journal: iScience

Status: code on request

[99] doi:10.3390/cancers18162616 [paper, data]

Decitabine Reprograms Temozolomide-Resistant Glioblastoma Through Epigenetic Reactivation and Mesenchymal Attenuation: A Multi-Omics Study.

Journal: Cancers

Status: code on request, 1 dataset cited

[100] doi:10.3389/fonc.2026.1806663 [paper, data]

A denoising autoencoder-enhanced ResNet 50 framework for explainable brain tumor classification using MRI.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[101] Code ↔ Paper doi:10.7759/cureus.114519 [paper, repository]

Mapping Half a Century of Global Brain Abscess Research: A Bibliometric Analysis of Output, Themes, and Collaboration (1975-2025).

Journal: Cureus

Authors' code: OSF myhp2 (no license)

Status: code verified, 11 files readable, 15 matches

Thursday, 13 August 2026 (6 papers)

[102] Code ↔ Paper doi:10.1038/s12276-026-01794-0 [paper, repository]

Extinction-restraint intervention eradicates fear memory encoded in BLA engram cells via D2 receptor-mediated dopaminergic modulation from locus coeruleus.

Journal: Experimental & molecular medicine

Authors' code: BehavioralLAB/Fiberphotometry (no license)

Status: code verified, 1 file readable

[103] Code ↔ Paper doi:10.1002/2211-5463.70322 [paper, repository]

Identification and characterisation of calcitonin receptor isoforms expressed in glioblastoma derived glioma stem and U-87 MG cells.

Journal: FEBS open bio

Authors' code: shwetajoshi-15/discoAnt (no license)

Status: code verified, 6 files readable

[104] Code ↔ Paper doi:10.1371/journal.pone.0345854 [paper, repository]

Shedding light on neural learning to rank models for anticancer drug prioritization.

Journal: PloS one

Authors' code: Sarmeili/NeuralDrugRanker (no license)

Status: code verified, 49 files readable, 6 matches

[105] doi:10.1016/j.jbc.2026.113447 [paper, data]

TIMELESS promotes glioma stemness and malignancy through JAK-STAT3 pathway.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[106] Code ↔ Paper doi:10.1007/s12035-026-06122-1 [paper, repository]

Alternative Polyadenylation in the Brain is Modulated by Chronic Ethanol Exposure in a Sex- and Cell Type-Specific Manner.

Journal: Molecular neurobiology

Authors' code: alleninstitute/abc_atlas_access (BSD-2-Clause)

Status: code verified, 24 files readable

[107] doi:10.3390/ijms27167240 [paper, data]

1-Piperidine Propionic Acid Inhibits PAR2/SerpinB3 Signaling and Reduces Glioblastoma Tumor Aggressiveness.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Wednesday, 12 August 2026 (8 papers)

[108] Code ↔ Paper doi:10.1126/sciadv.aee9298 [paper, repository]

Synaptic zinc plasticity shapes adaptive and maladaptive cortical plasticity following cochlear injury.

Journal: Science advances

Authors' code: Zenodo 8018820 (CC-BY-4.0)

Status: code verified, 111 files readable, 5 matches

[109] Code ↔ Paper doi:10.1038/s41586-026-10907-8 [paper, repository]

Procognitive restoration of PV neuron plasticity in neurodevelopmental disorders.

Journal: Nature

Authors' code: Zenodo 18496478 (CC-BY-4.0)

Status: code verified, 1 file readable, 3 matches

[110] Code ↔ Paper doi:10.1093/nc/niag043 [paper, repository]

Demographics-robust spontaneous eye blinking slowing in patients with severe acquired brain injury.

Journal: Neuroscience of consciousness

Authors' code: Leonardo-Corsi/blink-waveforms-sabi (MIT)

Status: code verified, 15 files readable, 6 matches

[111] doi:10.1117/1.jbo.31.8.086005 [paper]

Label-free wide-field imaging of brain tumors using near-infrared endogenous fluorescence and reflectance normalization.

Journal: Journal of biomedical optics

Status: code on request

[112] Code ↔ Paper doi:10.3389/ftox.2026.1816944 [paper, repository]

Neurodevelopmental outcomes relevant to autism in juvenile mice exposed to PCB 11 in the maternal diet throughout gestation and lactation.

Journal: Frontiers in toxicology

Authors' code: Zenodo 19716216 (CC-BY-4.0)

Status: code verified, 4 files readable

[113] doi:10.3389/fnins.2026.1908548 [paper, data]

Multimodal DeepSurv model with SHAP-based interpretation for predicting local failure in patients with brain metastases undergoing hypofractionated stereotactic radiotherapy.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[114] Code ↔ Paper doi:10.1016/j.isci.2026.116517 [paper, repository]

Spatially resolved transcriptomics in human brain metastases identifies macrophage-tumor interactions associated with survival.

Journal: iScience

Authors' code: huayc09/SeuratExtend (GPL-3.0)

Status: code verified, 60 files readable, 4 matches

[115] doi:10.1038/s41467-026-76683-1 [paper, data]

Inflammatory neuropathy in mouse and primate models of colorectal cancer.

Journal: Nature communications

Status: data only, 3 datasets cited

Tuesday, 11 August 2026 (5 papers)

[116] Code ↔ Paper doi:10.7554/elife.107661 [paper, repository]

In vivo mapping of striatal neurodegeneration in Huntington's disease with Soma and Neurite Density Imaging.

Journal: eLife

Authors' code: palombom/SANDI-Matlab-Toolbox-Latest-Release (BSD-2-Clause)

Status: code verified, 90 files readable, 6 matches

[117] Code ↔ Paper doi:10.2147/dddt.s624727 [paper, repository]

Lower Risk of Incident Dementia with SGLT2 Inhibitor Versus DPP-4 Inhibitor Initiation in Patients with Type 2 Diabetes and Prior Traumatic Brain Injury: A Retrospective Cohort Study.

Journal: Drug design, development and therapy

Authors' code: dovepress.com/article/supplementary_file (no license)

Status: code verified

[118] doi:10.3390/antib15040073 [paper, data]

Acetylcholine Receptor Antibody Positivity, RNST Abnormality, and Thymoma Predict Generalization in Ocular Myasthenia Gravis: A South Korean Cohort Study.

Journal: Antibodies (Basel, Switzerland)

Status: data only, 1 dataset cited

[119] Code ↔ Paper doi:10.1038/s41467-026-76320-x [paper, repository]

Intrinsic and non-cell-autonomous roles for the neurodevelopmental syndrome-linked transcription factor UNC-3/EBF.

Journal: Nature communications

Authors' code: KratsiosLab (no license), Zenodo 21345127 (CC-BY-4.0), kratsioslab/smith_etal_2026 (no license)

Status: code verified

[120] Code ↔ Paper doi:10.1038/s41467-026-76232-w [paper, repository]

Th17 effector cytokines induce shared and distinct microglial and endothelial cell responses in a mouse model for post-streptococcal encephalitis.

Journal: Nature communications

Authors' code: AgalliuLab/s-pyogenes-scRNAseq (no license)

Status: code verified, 5 files readable, 14 matches

Monday, 10 August 2026 (4 papers)

[121] doi:10.1007/s10549-026-08050-z [paper]

Association of tumor Schwann cells with epithelial-mesenchymal transition and immune-suppressive microenvironment in triple-negative breast cancer.

Journal: Breast cancer research and treatment

Status: code on request

[122] doi:10.1002/ame2.70276 [paper, data]

The diagnostic value of the circadian rhythm gene KLF10 in anxiety-depressive disorders and its neuroimmune regulatory mechanisms.

Journal: Animal models and experimental medicine

Status: data only, 1 dataset cited

[123] doi:10.1080/19336896.2026.2710965 [paper, data]

Epigenetic changes associated with the progression of prion disease in Syrian hamsters (<i>Mesocricetus auratus</i>).

Journal: Prion

Status: data only, 1 dataset cited

[124] Code ↔ Paper doi:10.21037/qims-2026-0792 [paper, repository]

An nnU-Net-based framework with adaptive feature representation for 3D brain tumor segmentation.

Journal: Quantitative imaging in medicine and surgery

Authors' code: DIAGNijmegen/nnUNet_v2 (Apache-2.0)

Status: code verified, 199 files readable, 8 matches

Saturday, 8 August 2026 (3 papers)

[125] Code ↔ Paper doi:10.1038/s41598-026-64405-y [paper, repository]

Evaluating clinical and neuroimaging predictors for cognitive-behavioral therapy outcome in obsessive-compulsive disorder.

Journal: Scientific reports

Authors' code: ritterlab/EPOC_outcome_prediction (no license)

Status: code verified, 47 files readable, 10 matches

[126] Code ↔ Paper doi:10.1038/s41467-026-76587-0 [paper, repository]

Uncovering the signaling networks of disseminated glioblastoma cells in vivo with INSIGHT.

Journal: Nature communications

Authors' code: cycif.org (no license), ryuhjinahn (no license), hub.docker.com/r/bumproo (no license)

Status: code verified

[127] Code ↔ Paper doi:10.1038/s41467-026-75862-4 [paper, repository]

Targeting m<sup>6</sup>A writer METTL3 with engineered nanovesicles reduces neuroinflammation in vitro and in vivo.

Journal: Nature communications

Authors' code: Zenodo 20627531 (CC-BY-4.0), xulf1996-arch/mettl3_m6a_bulk_pipeline (no license)

Status: code verified, 24 files readable, 5 matches

Friday, 7 August 2026 (1 paper)

[128] doi:10.1016/j.jbc.2026.113399 [paper, data]

Domain-dependent uncoupling of the co-chaperone and E3 ubiquitin ligase CHIP underlies heterogeneity in spinocerebellar ataxia 48.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

Thursday, 6 August 2026 (6 papers)

[129] Code ↔ Paper doi:10.1038/s12276-026-01801-4 [paper, repository]

Putative glioblastoma origin-like cells in the subventricular zone: isolation and characterization.

Journal: Experimental & molecular medicine

Authors' code: hoonbiolab/yugbmoc_paper (no license)

Status: code verified, 7 files readable, 6 matches

[130] doi:10.1162/imag.a.1324 [paper, data]

Spontaneous activation of cortical somatosensory networks depresses their excitability in preterm human neonates.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[131] Code ↔ Paper doi:10.3389/fonc.2026.1886395 [paper, repository]

Resources are associated with functional outcome and brain morphometry in childhood cancer survivors.

Journal: Frontiers in oncology

Authors' code: SCAN-NRAD/DL-DiReCT (BSD-3-Clause)

Status: code verified, 15 files readable, 2 matches

[132] Code ↔ Paper doi:10.3389/frai.2026.1891883 [paper, repository]

RN-D<sup>3</sup>: detection, differentiation, and delineation of radiation necrosis on post-contrast MRI.

Journal: Frontiers in artificial intelligence

Authors' code: chamseddine-lab/rn-d3 (other)

Status: code verified, 14 files readable, 2 matches

[133] Code ↔ Paper doi:10.3389/fneur.2026.1822479 [paper, repository]

Circulating neuron-derived cfDNA for blood-based detection of Alzheimer's and other neurodegenerative conditions.

Journal: Frontiers in neurology

Authors' code: nanoporetech/dorado (GPL-3.0), nanoporetech/modkit (GPL-3.0), Wasatch-Biolabs-Bfx/MethylSeqR (other)

Status: code verified, 925 files readable, 4 matches

[134] doi:10.3390/ncrna12040031 [paper, data]

Long-Read RNA Sequencing Reveals an Isoform Switching Pattern in Healthy Microglial Cell Lines Exposed to Radiotherapy.

Journal: Non-coding RNA

Status: data only, 1 dataset cited

Wednesday, 5 August 2026 (7 papers)

[135] Code ↔ Paper doi:10.1371/journal.pone.0354511 [paper, repository]

TokenUNet: A new case for transformers integration in efficient and interpretable 3D UNets for brain imaging segmentation.

Journal: PloS one

Authors' code: MedMaxLab/tokenunet (no license)

Status: code verified, 18 files readable, 7 matches

[136] doi:10.1371/journal.pgen.1011909 [paper, data]

Glial cell toxicity in a Drosophila C9orf72 neurodegeneration model.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[137] Code ↔ Paper doi:10.1016/j.xcrm.2026.102967 [paper, repository]

Phase 1 study of intracranial T cell therapy with pemetrexed for refractory brain metastases and glioblastomas.

Journal: Cell reports. Medicine

Authors' code: lh3/bwa (GPL-3.0)

Status: code verified, 68 files readable

[138] doi:10.1038/s41598-026-63915-z [paper, data]

A novel hybrid transformer-based framework (H-ConvNeXt-Swin) to classify brain tumors using MRI.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[139] doi:10.1162/imag.a.1329 [paper]

Atypical low-frequency and high-frequency neural entrainment to rhythmic audiovisual speech in adults with dyslexia.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[140] doi:10.3390/s26154963 [paper, data]

NeuroSPFNet: Vision-Language Semantic Prior-Guided Frequency-Enhanced Network for Brain Tumor Segmentation in Multimodal MRI.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[141] doi:10.1093/braincomms/fcag300 [paper]

Assessing CT-based volumetric analysis via deep learning for idiopathic normal pressure hydrocephalus.

Journal: Brain communications

Status: code on request

Tuesday, 4 August 2026 (4 papers)

[142] doi:10.1186/s40478-026-02388-7 [paper, data]

Galectin-3 is elevated in Müller glia in human glaucomatous eyes and ocular hypertensive rat eyes and associated with phagocytosing states.

Journal: Acta neuropathologica communications

Status: data only, 3 datasets cited

[143] doi:10.1111/bpa.70129 [paper]

Brain metastasis-associated fibroblasts shape the tumour microenvironment to enhance cancer cell invasion.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only

[144] doi:10.1038/s41598-026-61891-y [paper, data]

A class-wise quantum relational calibration network for brain tumor diagnosis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[145] doi:10.1186/s40478-026-02399-4 [paper, data]

Overactive EAAT1 Cl<sup>-</sup> channels impair GABAergic tonic inhibition in SLC1A3-associated episodic ataxia.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

Monday, 3 August 2026 (3 papers)

[146] doi:10.1101/gad.353596.125 [paper, data]

Functional divergence of Capicua isoforms explains differential tissue vulnerability in neurological disease.

Journal: Genes & development

Status: data only, 1 dataset cited

[147] doi:10.1073/pnas.2604124123 [paper]

Bladder mucosal afferents detect UTI and aid pathogen clearance.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[148] Code ↔ Paper doi:10.1177/11779322261475822 [paper, repository]

Unveiling Carbonic Anhydrase VIII, X, XI Expression in Cancer and Neurological Diseases Through Integrated Bioinformatics Approaches.

Journal: Bioinformatics and biology insights

Authors' code: Zenodo 12796528 (CC-BY-4.0)

Status: code verified

Saturday, 1 August 2026 (16 papers)

[149] doi:10.1021/acs.jproteome.5c01173 [paper, data]

Proteomic Analysis Identifies ATE1-Dependent Arginylation Dysregulation across Meningioma Grades.

Journal: Journal of proteome research

Status: data only, 1 dataset cited

[150] Code ↔ Paper doi:10.1093/bioinformatics/btag592 [paper, repository]

Network-based stratification of allele-specific expression reveals patient subgroups in Huntington's disease.

Journal: Bioinformatics (Oxford, England)

Authors' code: macsbio/HD-ASE-NBS (MIT)

Status: code verified, 40 files readable, 11 matches

[151] Code ↔ Paper doi:10.1093/cercor/bhag125 [paper, repository]

Heritable and experience-dependent cortical traits of reading ability.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: mikaelroll/corticalreading (MIT)

Status: code verified, 5 files readable, 5 matches

[152] doi:10.1002/alz.71680 [paper, data]

A combined artificial intelligence-wet lab approach identifies a pivotal role of the NAD<sup>+</sup>-mitophagy axis on aging and neurodegeneration.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[153] doi:10.1002/ctm2.70756 [paper, data]

Chronic stress-induced brain-derived small extracellular vesicles promote colorectal cancer through Treg differentiation.

Journal: Clinical and translational medicine

Status: data only, 1 dataset cited

[154] Code ↔ Paper doi:10.3390/ijms27156925 [paper, repository]

XGBoost-SHAP Interpretable Modeling Identifies and Validates an Eight-Gene Biomarker for Hepatic Encephalopathy Risk Prediction in Cirrhosis.

Journal: International journal of molecular sciences

Authors' code: seandavi/GEOquery (MIT), ModelOriented/shapviz (GPL-2.0), alserglab/fgsea (MIT), yuanfeng-lan/HE-risk-Prediction (MIT)

Status: code verified, 159 files readable, 18 matches

[155] doi:10.1097/md.0000000000050109 [paper, data]

The gut-immune-brain axis in CNS tumors: Causal roles of microbiota and inflammatory proteins unveiled by Mendelian randomization and single-cell transcriptomics.

Journal: Medicine

Status: data only, 1 dataset cited

[156] doi:10.1002/jcsm.70357 [paper, data]

Early and Divergent Lipid Mediator Remodelling in Fast Versus Slow Skeletal Muscles of Female hSOD1<sup>G93A</sup> Mice.

Journal: Journal of cachexia, sarcopenia and muscle

Status: data only, 1 dataset cited

[157] Code ↔ Paper doi:10.1002/brb3.71654 [paper, repository]

HIF-1α and HIF-2α Are Upregulated in the Hippocampus but Not in the Medial Prefrontal Cortex in Experimental PTSD.

Journal: Brain and behavior

Authors' code: DotardOneClick/PTSD_hypoxia_markers (MIT)

Status: code verified, 5 files readable, 4 matches

[158] doi:10.1002/ccs3.70041 [paper, data]

The suppressor of cytokine signaling 3 regulates glioma stem cell maintenance and immune microenvironment through signal transducer and activator of transcription 3 signaling.

Journal: Journal of cell communication and signaling

Status: data only, 1 dataset cited

[159] Code ↔ Paper doi:10.1093/bioinformatics/btag578 [paper, repository]

NicheDeSig: niche-aware deconvolution and adaptive signature analysis for spatial transcriptomics.

Journal: Bioinformatics (Oxford, England)

Authors' code: Zenodo 20604815 (Apache-2.0), Davidcoach/NicheDeSig (no license), Zenodo 20685597 (Apache-2.0)

Status: code verified, 10 files readable, 1 match

[160] Code ↔ Paper doi:10.1002/mp.70599 [paper, repository]

Accurate estimation of intravoxel incoherent motion parameters based on implicit neural representation.

Journal: Medical physics

Authors' code: Kent0n-Li/IVIM-INR (no license)

Status: code verified, 2 files readable, 4 matches

[161] Code ↔ Paper doi:10.1002/brb3.71581 [paper, repository]

Blunted Reward Responsiveness During Social Feedback: Associations with Peer Victimization and Anhedonia in Socially Anxious Adolescents.

Journal: Brain and behavior

Authors' code: daisylabhub/ARSA (no license)

Status: code verified, 6 files readable, 3 matches

[162] doi:10.1158/2767-9764.crc-25-0811 [paper, data]

Targeting Wild-type NTRK in NTRK Fusion-Negative Lung Cancer Decreases Brain Metastases.

Journal: Cancer research communications

Status: data only, 1 dataset cited

[163] Code ↔ Paper doi:10.1158/2767-9764.crc-25-0579 [paper, repository]

Glioblastoma Subtypes Exhibit Distinct Migration Mechanics and Immune Responses.

Journal: Cancer research communications

Authors' code: drive.google.com/file/d (no license), davidodde/shamsan_etal_codes (MIT)

Status: code verified, 7 files readable, 3 matches

[164] doi:10.1002/pchj.70113 [paper]

Shared and Unique Patterns of Dysregulated Dual Systems Between Adolescent Problematic Video Gaming and ADHD.

Journal: PsyCh journal

Status: code on request

Friday, 31 July 2026 (7 papers)

[165] doi:10.1007/s00221-026-07368-w [paper]

The role of catastrophizing in anxiety and depression symptom scores among knee osteoarthritis patients: a multimodal assessment with EEG and machine learning.

Journal: Experimental brain research

Status: code on request

[166] Code ↔ Paper doi:10.1371/journal.pone.0354882 [paper, repository]

Integrative network pharmacology, transcriptomics, and molecular docking identify candidate Centella asiatica constituents and targets in neurodegenerative diseases.

Journal: PloS one

Authors' code: Zenodo 20779507 (CC-BY-4.0)

Status: code verified, 1 file readable

[167] Code ↔ Paper doi:10.1016/j.celrep.2026.117782 [paper, repository]

Thermodynamics of consciousness: Non-equilibrium brain dynamics track conscious states.

Journal: Cell reports

Authors' code: Zenodo 20719663 (MIT), tomasberjagabuisan/Thermo-Consciousness (MIT)

Status: code verified, 28 files readable, 8 matches

[168] Code ↔ Paper doi:10.1016/j.xpro.2026.104695 [paper, repository]

Protocol for single-cell epigenetic profiling in human organoids and tumoroids with Epi-CyTOF.

Journal: STAR protocols

Authors' code: Stacheltier/EPI-CyTOF (MIT), ParkerICI/premessa (GPL-3.0)

Status: code verified, 582 files readable, 2 matches

[169] Code ↔ Paper doi:10.1590/2317-1782/e20250375pt [paper, repository]

A survey of strategies for the early diagnosis of hearing loss in infants: a scoping review.

Journal: CoDAS

Authors' code: OSF qw4bg (no license)

Status: empty repository

[170] doi:10.1016/j.isci.2026.116975 [paper, data]

Loss of YY1 in Purkinje cells triggers cerebellar ataxia via Wnt10b-mediated impairment of dendrite development.

Journal: iScience

Status: data only, 1 dataset cited

[171] doi:10.3389/fonc.2026.1834400 [paper, data]

BrainFusionNet: an attention-augmented deep convolutional framework with hybrid loss optimisation and test-time augmentation for multi-class brain tumour detection in magnetic resonance images.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

Thursday, 30 July 2026 (7 papers)

[172] Code ↔ Paper doi:10.1016/j.ebiom.2026.106408 [paper, repository]

Microcephaly-like phenotype triggered by novel reassortant and prototypic Oropouche virus strains in brain organoids.

Journal: EBioMedicine

Authors' code: iza-mcac/2025-08-Oropouche-virus-strains-brain (GPL-3.0)

Status: code verified, 6 files readable, 6 matches

[173] doi:10.1016/j.esmoop.2026.108300 [paper]

Era-specific prognostic factors and an interpretable machine-learning survival model for renal cell carcinoma brain metastases.

Journal: ESMO open

Status: code on request

[174] doi:10.1016/j.isci.2026.116995 [paper, data]

EEG microstates and dynamic functional connectivity reveal stage-specific brain networks in subjective tinnitus.

Journal: iScience

Status: code on request, 1 dataset cited

[175] Code ↔ Paper doi:10.1016/j.isci.2026.117012 [paper, repository]

Multi-level static and dynamic graph-theoretical analyses of resting-state functional networks in a Chinese cohort of preterm neonates.

Journal: iScience

Authors' code: tpengfdu-eng/neonate_GT (no license)

Status: code verified, 10 files readable, 5 matches

[176] doi:10.3390/diagnostics16152407 [paper, data]

BG-YOLO11s: Boundary-Guided YOLO11 with Bézier Contour Augmentation for Brain Tumour Segmentation in T1-CE MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request, 1 dataset cited

[177] Code ↔ Paper doi:10.1038/s41467-026-76103-4 [paper, repository]

Low-intensity pulsed ultrasound-mediated nose-to-brain co-delivery of β-blockers and aPD-L1 enhances glioblastoma immunotherapy.

Journal: Nature communications

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable, 2 matches

[178] Code ↔ Paper doi:10.1038/s41467-026-76156-5 [paper, repository]

Longitudinal analysis reveals myeloid cell contributions to murine neuroPASC pathogenesis.

Journal: Nature communications

Authors' code: lutan3/neuroPASC-scRNA-seq-data-analysis (Apache-2.0)

Status: empty repository, 2 files readable

Wednesday, 29 July 2026 (8 papers)

[179] doi:10.1080/10717544.2026.2708389 [paper, data]

Ultrasound-triggered platelet vehicles loading fluorescein for targeted sonodynamic therapy of glioblastoma.

Journal: Drug delivery

Status: data only, 1 dataset cited

[180] Code ↔ Paper doi:10.1126/sciadv.aee8648 [paper, repository]

IoT-enabled wireless neural implant for chronic, programmable neuropharmacology and optogenetics.

Journal: Science advances

Authors' code: Zenodo 20063531 (CC-BY-4.0), jey0920/aee8648_firmware (MIT)

Status: code verified, 6 files readable

[181] doi:10.1016/j.mocell.2026.100387 [paper, data]

USP15 mutation associated with autism spectrum disorder alters progenitor fate and neuronal maturation in human brain organoids.

Journal: Molecules and cells

Status: data only, 1 dataset cited

[182] doi:10.3389/fnins.2026.1875642 [paper, data]

Convolutional neural networks in brain disease diagnosis: a unified review of Alzheimer's, Parkinson's, and brain tumor classification.

Journal: Frontiers in neuroscience

Status: data only, 7 datasets cited

[183] Code ↔ Paper doi:10.3389/fpsyg.2026.1819517 [paper, repository]

Development and validation of the performance evaluation anxiety task: a computerized task to identify functionally significant test anxiety.

Journal: Frontiers in psychology

Authors' code: doi:10.7910/dvn/nxdzma (no license)

Status: code found, not verified yet

[184] Code ↔ Paper doi:10.3390/biomedicines14081702 [paper, repository]

Complement-Targeted Therapies in Glioblastoma: A Systematic Review.

Journal: Biomedicines

Authors' code: OSF w2fh3 (no license)

Status: code verified, 1 file readable

[185] doi:10.1038/s41467-026-75997-4 [paper, data]

Active conformations of neuronal Na<sup>+</sup>, K<sup>+</sup>-ATPase isoforms and a disease-causing mutant.

Journal: Nature communications

Status: data only, 2 datasets cited

[186] Code ↔ Paper doi:10.1093/braincomms/fcag264 [paper, repository]

Elevated intron retention implicates neuroinflammation in brains of individuals with alcohol use disorder.

Journal: Brain communications

Authors' code: cpdong/IntronNeoantigen (no license)

Status: code verified, 5 files readable, 1 match

Tuesday, 28 July 2026 (1 paper)

[187] doi:10.3892/ol.2026.15782 [paper]

<i>FAM122B</i> acts as an independent poor prognostic factor and promotes the malignant biological behaviors of low-grade glioma.

Journal: Oncology letters

Status: data only

Monday, 27 July 2026 (7 papers)

[188] doi:10.1002/advs.76695 [paper, data]

NSD2 Coordinates the Neurogenic-to-Gliogenic Transition via H3K36me2-Dependent Activation of the EGFR-ERK Pathway.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[189] Code ↔ Paper doi:10.1007/s11033-026-12429-y [paper, repository]

Transcriptome-wide profiling of cystic and solid vestibular schwannomas reveals candidate long non-coding RNA signatures.

Journal: Molecular biology reports

Authors' code: decodebiology/Vestibular_schwannoma_2025 (no license)

Status: code verified, 11 files readable, 5 matches

[190] Code ↔ Paper doi:10.1038/s43856-026-01510-z [paper, repository]

Mapping genetic convergence across brain structure, mental health, and cardiometabolic disease.

Journal: Communications medicine

Authors' code: BioPsyk/cleansumstats (no license), bulik/ldsc (GPL-3.0), comorment/ldsc (GPL-3.0), precimed/mix3r (no license), GenomicSEM/GenomicSEM (GPL-3.0), precimed/pleiofdr (GPL-3.0)

Status: code verified, 313 files readable, 4 matches

[191] Code ↔ Paper doi:10.1007/s00415-026-13884-0 [paper, repository]

Spatial analysis of paraneoplastic cerebellar degeneration in ovarian cancer with anti-Yo syndrome and SCA1.

Journal: Journal of neurology

Authors' code: tamelenak/pcd-spatial-analysis (no license)

Status: code verified, 6 files readable, 12 matches

[192] doi:10.1016/j.isci.2026.116945 [paper]

Neurodegeneration in the olfactory system in Niemann Pick type C1 disease.

Journal: iScience

Status: code on request

[193] doi:10.1016/j.omta.2026.201820 [paper]

i.c.v. delivery of AAV9-synapsin-promoted caveolin-1 attenuates neuromuscular deficits and neuromuscular degeneration in hSOD1<sup>G93A</sup> mice.

Journal: Molecular therapy. Advances

Status: code on request

[194] doi:10.1186/s40478-026-02391-y [paper, data]

Neuro-glial lipid imbalance in a Drosophila model of amyotrophic lateral sclerosis 8.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

Sunday, 26 July 2026 (4 papers)

[195] doi:10.1111/bpa.70125 [paper, data]

From patient to tumor organoid: Culture protocol choice controls glioblastoma tumor architecture and identity.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only, 1 dataset cited

[196] doi:10.3390/ijms27156671 [paper, data]

Inflamed Yet Immune-Evasive? A Transcriptomic Meta-Analysis Identifies Conserved Inflammatory, Developmental, and Neuronal Signatures Associated with Polyploid Giant Cancer Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[197] Code ↔ Paper doi:10.3390/biomedicines14081677 [paper, repository]

Exploratory Genome and Transcriptome-Wide Association Analyses of Addiction-Related Phenotypes in a Twin Cohort.

Journal: Biomedicines

Authors' code: jared8844/code-for-addiction-paper (no license)

Status: code verified, 3 files readable, 5 matches

[198] doi:10.1186/s40708-026-00325-x [paper, data]

CAE-BrainNet: a statistically validated class-adaptive attention ensemble model for explainable brain tumor classification from MRI.

Journal: Brain informatics

Status: data only, 4 datasets cited

Friday, 24 July 2026 (5 papers)

[199] doi:10.1242/dmm.052810 [paper, data]

Fos regulates age-dependent neuroinflammation in a VAPP58S model of amyotrophic lateral sclerosis.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[200] Code ↔ Paper doi:10.1371/journal.pcbi.1014573 [paper, repository]

Cell-type-specific m1A dynamics are associated with microglial phenotypic transition and neuronal metabolic adaptation during spinal cord injury.

Journal: PLoS computational biology

Authors' code: Magetutor/m1A_score_manuscript (MIT)

Status: code verified, 28 files readable, 15 matches

[201] Code ↔ Paper doi:10.1242/dmm.052747 [paper, repository]

Cell death analysis of inducible, titratable neurodegenerative disease models in zebrafish and human stem cell-derived retinal organoids.

Journal: Disease models & mechanisms

Authors' code: mummlab/Cell-Death-in-NTR2.0-mediated-RGC-Ablation (no license)

Status: code verified, 6 files readable, 3 matches

[202] doi:10.3389/fonc.2026.1823895 [paper, data]

Phosphorylation of tumour suppressor Amotl2 by IKBKE kinase promotes YAP1 signalling, enhancing glioblastoma growth.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[203] doi:10.1016/j.omta.2026.201818 [paper]

Antisense oligonucleotide treatment following viral delivery of artificial SOD1-targeting miRNA shows improved efficacy in SOD1-G93A mice.

Journal: Molecular therapy. Advances

Status: code on request

Thursday, 23 July 2026 (5 papers)

[204] doi:10.1002/advs.76778 [paper, data]

A Blood-Derived Factor Rescues ALS: Platelet Factor 4 Activates OPTN-Dependent Autophagy to Clear SOD1 Aggregates Independently of PINK1.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 2 datasets cited

[205] doi:10.1016/j.stemcr.2026.103020 [paper, data]

Brain corticogenesis promotes SARS-CoV-2 neuro-glial tropism through lipid-dependent viral replication.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[206] Code ↔ Paper doi:10.1016/j.isci.2026.116906 [paper, repository]

Evaluating exon skipping in the central nervous system in Duchenne muscular dystrophy using spatial transcriptomics.

Journal: iScience

Authors' code: Qirongmao97/Xenium_DMD_brain (GPL-3.0)

Status: code verified, 12 files readable, 8 matches

[207] Code ↔ Paper doi:10.1038/s41467-026-75723-0 [paper, repository]

Spatial transcriptomics reveals distinct cell type dynamics following opioid dependence in female mice with the common human μ-opioid receptor variant Oprm1 A118G.

Journal: Nature communications

Authors' code: GoogleXie/CellDynamicST (other)

Status: code verified, 36 files readable, 40 matches

[208] doi:10.3390/genes17080849 [paper]

Deciphering the Role of LNX2 as a Potential Contributor to Neurodevelopmental Disorders.

Journal: Genes

Status: data only

Wednesday, 22 July 2026 (8 papers)

[209] Code ↔ Paper doi:10.1073/pnas.2605466123 [paper, repository]

Parabrachial <i>Ntsr1</i> neurons modulate food intake and anxiety through a projection to the ventromedial hypothalamus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: JLPauli/PBN-Ntsr1-Analysis (no license)

Status: code verified, 2 files readable

[210] doi:10.21203/rs.3.rs-10360357/v1 [paper, data]

State and trait anxiety modulate hemodynamic amygdala responses to innocuous auditory stimulation

Journal: Research Square (preprint)

Status: data only, 2 datasets cited

[211] doi:10.1186/s40478-026-02382-z [paper, data]

Methylation profiling and alternative classification approaches in a glioma-enriched FFPE stereotaxic biopsy cohort.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[212] doi:10.1155/ijog/2045937 [paper, data]

Ubiquitin-Proteasome System-Related Prognostic Model and Immune Landscape in Glioblastoma.

Journal: International journal of genomics

Status: data only, 1 dataset cited

[213] doi:10.1162/imag.a.1307 [paper]

Accelerated maturation of brain circuits and executive function in adolescents who experienced the COVID-19 pandemic.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[214] doi:10.3390/ijms27146503 [paper, data]

Modeling Tay-Sachs Disease in Astrocyte-like Cells Reveals Significant Changes in the Transcriptomic Profile.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[215] doi:10.1016/j.omtn.2026.103036 [paper]

NADPH oxidase 3 inhibition preserves hearing in mice after stereotactic radiosurgery.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[216] doi:10.1038/s41467-026-75895-9 [paper, data]

Distinct Filament Conformation for Receptor-Bound Amyloid-β from Alzheimer's Disease Brain.

Journal: Nature communications

Status: data only, 6 datasets cited

Tuesday, 21 July 2026 (2 papers)

[217] Code ↔ Paper doi:10.1371/journal.pmed.1004860 [paper, repository]

Brain aging patterns among nine neurological disorders: A case-control study.

Journal: PLoS medicine

Authors' code: liangchuang11/Brain-age-prediction (no license), Zenodo 20743298 (CC-BY-4.0), liangchuang11/brain_age_de-identified-minimal_data (no license), Zenodo 20743260 (CC-BY-4.0)

Status: code verified, 156 files readable, 6 matches

[218] Code ↔ Paper doi:10.1371/journal.pone.0353463 [paper, repository]

Distinct gut and oral microbiome patterns associated with dyslexia in a family-based cohort: A preliminary exploratory study.

Journal: PloS one

Authors' code: asu-htm/Neuro-Microbiome-Exploration-Dyslexia-and-Apraxia-Focus (no license)

Status: code verified, 6 files readable, 8 matches

Monday, 20 July 2026 (5 papers)

[219] Code ↔ Paper doi:10.1038/s41398-026-04172-6 [paper, repository]

Obesity is associated with greater variability of reward signals in the nucleus accumbens.

Journal: Translational psychiatry

Authors' code: OSF tewpn (no license)

Status: code verified, 1 file readable, 1 match

[220] Code ↔ Paper doi:10.1038/s41467-026-75273-5 [paper, repository]

Spinal cord regeneration deploys cell-type specific developmental and non-developmental strategies to restore neuron diversity.

Journal: Nature communications

Authors' code: angellswearera/scRNAseq_xenopus_regen_wills (no license), Zenodo 20549290 (CC-BY-4.0)

Status: code verified, 40 files readable, 17 matches

[221] doi:10.3390/biomedicines14071628 [paper]

Circulating Placental Growth Factor as a Prognostic Biomarker in High-Risk Glioblastoma Patients.

Journal: Biomedicines

Status: code on request

[222] doi:10.3389/fimmu.2026.1805159 [paper, data]

Small extracellular vesicles proteome reveals persistent inflammatory and coagulopathic dysregulation in long-COVID.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[223] doi:10.3389/fncom.2026.1799705 [paper, data]

Structural synaptogenesis superior to functional modulation in a pruning-based recurrent network model of OCD.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

Sunday, 19 July 2026 (2 papers)

[224] doi:10.1002/ana.78300 [paper, data]

Distribution of Big Tau Isoforms in the Human Central and Peripheral Nervous System.

Journal: Annals of neurology

Status: data only, 1 dataset cited

[225] Code ↔ Paper doi:10.1016/j.nicl.2026.104037 [paper, repository]

Revisiting intensity normalization in brain [<sup>18</sup>F]FDG PET: What is reliable in autoimmune encephalitis?

Journal: NeuroImage. Clinical

Authors' code: rogeau/fdg-pet-intensitynorm-ae (MIT)

Status: code verified, 18 files readable

Saturday, 18 July 2026 (2 papers)

[226] Code ↔ Paper doi:10.1038/s41380-026-03691-4 [paper, repository]

Breaking the norm: population-scale deviations of brain structure in depression and anxiety.

Journal: Molecular psychiatry

Authors' code: wiegertj/DeepNormativeModeling (GPL-3.0)

Status: code verified, 23 files readable, 15 matches

[227] doi:10.7759/cureus.112902 [paper, data]

DNA Methylation at Core N-Methyl-D-Aspartate (NMDA) Receptor Genes Reveals a Glutamatergic Signature of Aging in Post-COVID Whole Blood With Implications for Long-COVID Neuropsychiatric Sequelae.

Journal: Cureus

Status: data only, 1 dataset cited

Friday, 17 July 2026 (2 papers)

[228] doi:10.3390/biology15141179 [paper, data]

Transcriptomic Evidence Identifies Two TMBIM Subgroups with Opposing Prognostic Associations in Glioma.

Journal: Biology

Status: data only, 1 dataset cited

[229] Code ↔ Paper doi:10.3389/fped.2026.1861527 [paper, repository]

A predictive model for central nervous system infections in children based on machine learning and clinical diagnostic features.

Journal: Frontiers in pediatrics

Authors' code: yaotianhua0924/Central-Nervous-System-Infections (no license)

Status: empty repository, 1 file readable

Thursday, 16 July 2026 (4 papers)

[230] doi:10.1016/j.stemcr.2026.103013 [paper]

Targeting mitotic kinesin KIF20A: A differentiation-based therapeutic strategy for glioblastoma stem/progenitor cells.

Journal: Stem cell reports

Status: code on request

[231] doi:10.1038/s41591-026-04498-0 [paper]

A neuroprosthesis for restoring hand movement and sensation in a person with complete tetraplegia.

Journal: Nature medicine

Status: code on request

[232] doi:10.1186/s12974-026-03964-3 [paper, data]

Circulating immune profiling reveals impaired monocyte states and trajectories driving immunosuppression in glioblastoma.

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

[233] doi:10.3389/fnagi.2026.1767582 [paper]

Structural brain changes in the development of essential tremor: toward early diagnosis.

Journal: Frontiers in aging neuroscience

Status: code on request

Wednesday, 15 July 2026 (2 papers)

[234] Code ↔ Paper doi:10.1007/s11695-026-08828-6 [paper, repository]

Enhancing Postoperative Outcomes After Metabolic Bariatric Surgery: a Pilot Study of Inhibitory Control Training, Transcranial Direct Current Stimulation and Psychosocial Aftercare.

Journal: Obesity surgery

Authors' code: OSF 4aktp (no license)

Status: code found, not verified yet

[235] doi:10.1371/journal.pone.0351667 [paper, data]

MamNet-PT: A Mamba-enhanced hybrid architecture with selective state-space modeling for uncertainty-aware brain tumor segmentation.

Journal: PloS one

Status: data only, 1 dataset cited

Tuesday, 14 July 2026 (7 papers)

[236] doi:10.1080/01652176.2026.2696026 [paper, data]

Canine brain imaging with a new low-field portable (0.05 T) MRI scanner: a pilot <i>in vivo</i> comparison to conventional 1.5 T.

Journal: The veterinary quarterly

Status: data only, 1 dataset cited

[237] doi:10.1128/mbio.01294-26 [paper, data]

Single-cell analysis of Powassan virus-infected brains reveals age-dependent neuroinflammatory crosstalk and progressive Alzheimer's-like APP/Aβ accumulation.

Journal: mBio

Status: code on request, 1 dataset cited

[238] doi:10.1172/jci.insight.200106 [paper, data]

HDAC6 inhibition alleviates mitochondrial trafficking in models of Charcot-Marie-Tooth disease type 2A.

Journal: JCI insight

Status: data only, 1 dataset cited

[239] doi:10.1371/journal.pone.0352353 [paper, data]

Deep convolutional GAN and hypernet-based neural architecture search for brain tumor diagnosis detection and classification.

Journal: PloS one

Status: data only, 1 dataset cited

[240] doi:10.1016/j.ebiom.2026.106377 [paper]

Perilymphatic ATP plays a critical role in modulating cochlear function to protect from loud sound induced hearing loss.

Journal: EBioMedicine

Status: code on request

[241] doi:10.3390/diagnostics16142189 [paper, data]

Transfer Learning and Optimized Machine Learning Techniques for Multiclass Diabetic Retinopathy Classification Using Retinal Images.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[242] doi:10.3390/jcm15145508 [paper, data]

Region-Wise Bézier Intensity Augmentation for Domain-Generalized Brain Tumor Segmentation with a Mamba U-Net.

Journal: Journal of clinical medicine

Status: code on request, 1 dataset cited

Monday, 13 July 2026 (10 papers)

[243] Code ↔ Paper doi:10.1523/eneuro.0008-26.2026 [paper, repository]

Movement Disorder Patients with Depression Have Altered Corticostriatal Alpha-Beta Power Response to Reward and Loss.

Journal: eNeuro

Authors' code: qhelen/MD-Depression-Reward (no license)

Status: code verified, 9 files readable, 3 matches

[244] doi:10.1038/s41467-026-75128-z [paper, data]

Surface circumferential spinal cord recording in freely moving rodents.

Journal: Nature communications

Status: data only, 1 dataset cited

[245] Code ↔ Paper doi:10.1038/s42255-026-01555-3 [paper, repository]

The perineurium integrates leptin with its sympathetic outflow to protect against obesity.

Journal: Nature metabolism

Authors' code: automet26/Sympathetic_Perineurium_Leptin_Obesity (MIT)

Status: code verified, 23 files readable, 15 matches

[246] doi:10.1186/s12935-026-04370-8 [paper]

Machine learning-based prognostic model and single-cell transcriptomic integration for identifying brain metastasis-associated malignant subpopulations and potential therapeutic targets in lung adenocarcinoma.

Journal: Cancer cell international

Status: data only

[247] doi:10.1186/s13020-026-01445-6 [paper, data]

Electroacupuncture enhances anti-tumor immunity in TNBC by reducing NE release and blocking α2-AR-mediated NGF/Hippo signaling.

Journal: Chinese medicine

Status: data only, 2 datasets cited

[248] doi:10.1186/s41016-026-00441-x [paper, data]

Advances in local field potential research in prolonged disorders of consciousness: a narrative review.

Journal: Chinese neurosurgical journal

Status: data only, 1 dataset cited

[249] Code ↔ Paper doi:10.1002/acn3.70469 [paper, repository]

Quantitative MRI Uncovers Subtle Cortical Damage in Myelin Oligodendrocyte Glycoprotein Antibody-Associated Disease.

Journal: Annals of clinical and translational neurology

Authors' code: petergoodin/myelin_map (no license)

Status: code verified, 4 files readable, 1 match

[250] Code ↔ Paper doi:10.1093/braincomms/fcag269 [paper, repository]

Distinct brain regions are affected by neurodevelopmental or pre-dementia changes in Down syndrome.

Journal: Brain communications

Authors' code: ricardomar/Lilia-journal-2026 (no license)

Status: code verified, 2 files readable

[251] Code ↔ Paper doi:10.1093/braincomms/fcag272 [paper, repository]

Strenuous physical activity is associated with a younger age of amyotrophic lateral sclerosis onset in two independent cohorts.

Journal: Brain communications

Authors' code: Zenodo 18508813 (CC-BY-4.0)

Status: code verified, 2 files readable, 6 matches

[252] Code ↔ Paper doi:10.1016/j.dadr.2026.100463 [paper, repository]

Substance use patterns from late childhood to mid-adolescence: Updates on the Adolescent Brain Cognitive Development Study.

Journal: Drug and alcohol dependence reports

Authors' code: OSF dgqc9 (no license)

Status: code verified, 5 files readable, 1 match

Sunday, 12 July 2026 (1 paper)

[253] Code ↔ Paper doi:10.1002/aur.70312 [paper, repository]

Aberrant Neural Entrainment to Word-Level Speech Patterns in Fragile X Syndrome: Evidence for a Statistical Learning Deficit.

Journal: Autism research : official journal of the International Society for Autism Research

Authors' code: Zenodo 18746668 (CC-BY-4.0)

Status: code verified, 5 files readable, 5 matches

Friday, 10 July 2026 (7 papers)

[254] doi:10.1371/journal.ppat.1014395 [paper, data]

Characterization of an immunocompetent, young adult mouse model for studying chikungunya virus neuroinvasion and central nervous system infection.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[255] doi:10.1371/journal.pone.0352693 [paper, data]

Loss of Fmr1 reorganizes the multi-elemental composition across tissues in Fragile X Syndrome mice.

Journal: PloS one

Status: data only, 1 dataset cited

[256] Code ↔ Paper doi:10.1126/sciadv.aec2348 [paper, repository]

Congenital blindness reduces myelination in human visual cortex.

Journal: Science advances

Authors' code: Zenodo 20395292 (CC-BY-4.0), Zenodo 1442584 (MIT), lenastroh/blindnessmyelination (no license)

Status: code verified, 25 files readable

[257] Code ↔ Paper doi:10.2196/89627 [paper, repository]

Using Ecological Momentary Assessment, Geolocation Tracking, and Neuroimaging to Assess Effects of Tobacco Retail Exposure on Smoking Behavior: Protocol for the GeoSmoking Study.

Journal: JMIR research protocols

Authors' code: OSF mqbec (no license), OSF acbje (no license), OSF k9qnw (no license)

Status: empty repository

[258] doi:10.1186/s11689-026-09705-0 [paper, data]

Expanding clinical variability in FBXW7-related neurodevelopmental disorder: a multicenter case series.

Journal: Journal of neurodevelopmental disorders

Status: data only, 1 dataset cited

[259] doi:10.1186/s12951-026-04551-7 [paper, data]

The role of AI-assisted drug repurposing in neurological disorders: a systematic review of validation strategies, challenges and opportunities.

Journal: Journal of nanobiotechnology

Status: data only, 1 dataset cited

[260] Code ↔ Paper doi:10.3390/neurolint18070133 [paper, repository]

Therapeutic Advances in Major NBIA Disorders: Current Strategies and Translational Challenges.

Journal: Neurology international

Authors' code: ec.europa.eu/health/documents (no license)

Status: code verified

Thursday, 9 July 2026 (9 papers)

[261] Code ↔ Paper doi:10.1523/eneuro.0041-26.2026 [paper, repository]

Ocular Speech Tracking Persists in Blindness, but Its Dynamics and Oculo-Cerebral Connectivity Depend on Visual Status.

Journal: eNeuro

Authors' code: KajaRosa/kb_blindaudio (no license)

Status: code verified, 14 files readable, 8 matches

[262] doi:10.1002/advs.76479 [paper]

RPLP2 Mediates the Beneficial Effects of Exercise on Stress Resistance Through Muscle-Brain Communication.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[263] doi:10.1159/000553488 [paper, data]

Spinocerebellar Ataxia Type 12: Spectrums of Movement Disorders and Clinical Features.

Journal: Neuro-degenerative diseases

Status: data only, 1 dataset cited

[264] doi:10.1038/s41467-026-74888-y [paper, data]

Engineered zwitterion-nanodelivery for precision targeting of brain metastases.

Journal: Nature communications

Status: data only, 1 dataset cited

[265] Code ↔ Paper doi:10.1186/s12876-026-05097-6 [paper, repository]

Brain network correlates of fatigue, depression, and anxiety in patients with Crohn's Disease in different disease states.

Journal: BMC gastroenterology

Authors' code: trendscenter/fit (no license)

Status: code verified, 587 files readable, 1 match

[266] Code ↔ Paper doi:10.3389/fgene.2026.1807347 [paper, repository]

Epigenetic regulators are preferentially coordinated with protocadherin gene expression across the human brain: a genome-wide co-expression analysis.

Journal: Frontiers in genetics

Authors' code: nwharbert8-ui/epigenetic-pcdh-coordination (MIT)

Status: code verified, 12 files readable, 13 matches

[267] doi:10.3389/fphar.2026.1887454 [paper]

Posterior reversible encephalopathy syndrome across 22 VEGF-pathway inhibitors in the FDA adverse event reporting system: reporting patterns and reporting-interval characteristics.

Journal: Frontiers in pharmacology

Status: code on request

[268] doi:10.3389/fgene.2026.1814786 [paper, data]

Global-local feature fusion: a robust hybrid deep learning model for multiclass brain tumor classification with Grad-CAM++ interpretation.

Journal: Frontiers in genetics

Status: data only, 2 datasets cited

[269] doi:10.3390/reports9030218 [paper]

Neurological Comorbidity Burden, Outcomes, and Disparities in Head and Neck Cancer During COVID-19.

Journal: Reports (MDPI)

Status: code on request

Wednesday, 8 July 2026 (4 papers)

[270] doi:10.1186/s40035-026-00565-1 [paper, data]

Plant-derived mitochondria mitigate aging-related neurodegeneration by reprogramming microglial mitochondrial energy metabolism.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[271] doi:10.3389/fimmu.2026.1866830 [paper, data]

Heterogeneity of immune checkpoint inhibitor-related inflammatory central nervous system adverse event reporting signals in primary and metastatic brain tumors: a pharmacovigilance study with single-cell and spatial transcriptomic contextualization.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[272] doi:10.3389/fnmol.2026.1844602 [paper, data]

Prenatal and neonatal housing conditions affect anxiety-like behavior in adulthood in rats and interact with brain-derived neurotrophic factor (BDNF) Val66Met to alter expression of BDNF and stress markers in the ventral hippocampus.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[273] Code ↔ Paper doi:10.3390/biology15141097 [paper, repository]

Counterfactual Diffusion Modeling Enables Spatially Targeted Reprogramming of Tissue Microenvironments.

Journal: Biology

Authors' code: WenhuiDing/SPAD-CFR (MIT)

Status: code verified, 36 files readable, 14 matches

Tuesday, 7 July 2026 (7 papers)

[274] doi:10.1016/j.celrep.2026.117672 [paper]

Striatal neuron dysfunction in C9ORF72-FTD/ALS is driven by AIS and potassium channel dysregulation.

Journal: Cell reports

Status: code on request

[275] doi:10.1159/000553421 [paper, data]

Linking Affective Symptoms and Brain Morphology in Cocaine Use Disorder: An Integrated Network Approach.

Journal: European addiction research

Status: data only, 4 datasets cited

[276] doi:10.1038/s41467-026-74782-7 [paper, data]

Anti-PD-1 plus anti-CTLA-4 blockade overcomes immune exclusion in NSCLC brain metastases by enhancing CD8<sup>+</sup> T cell responses and promoting tertiary lymphoid structure formation.

Journal: Nature communications

Status: data only, 1 dataset cited

[277] doi:10.1186/s12974-026-03951-8 [paper, data]

Forkhead box versus NF-κB hippocampal snRNA-seq profiles distinguish anti-Drebrin- and anti-GAD65-positive encephalitis.

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

[278] doi:10.1016/j.isci.2026.116660 [paper]

Development of an <i>in vivo</i>, screenable, split-luciferase based model of huntingtin multimerization.

Journal: iScience

Status: code on request

[279] doi:10.3390/e28070769 [paper]

Correlation-Induced Accessibility Bridges in Biomedical Networks: A Proof-of-Concept Relational Graph Model.

Journal: Entropy (Basel, Switzerland)

Status: code on request

[280] Code ↔ Paper doi:10.1093/braincomms/fcag259 [paper, repository]

Papilledema is not the point: intracranial pressure dysregulation as a common pathway in migraine and idiopathic intracranial hypertension.

Journal: Brain communications

Authors' code: dnafinder (no license)

Status: code verified

Monday, 6 July 2026 (4 papers)

[281] Code ↔ Paper doi:10.7554/elife.107085 [paper, repository]

Activity-dependent CO<sub>2</sub> production in the axon triggers opening of Connexin32 in the Schwann cell paranode.

Journal: eLife

Authors' code: supp:PMC13336771/elife-107085-code1.zip (no license), supp:PMC13336771/elife-107085-code2.zip (no license), supp:PMC13336771/elife-107085-code3.zip (no license)

Status: empty repository

[282] Code ↔ Paper doi:10.3390/ijms27136068 [paper, repository]

Loss of Neuropeptide Y Signaling Accompanies the Neural-to-Mesenchymal Transcriptional Transition in Glioblastoma: A Multi-Scale Transcriptomic Analysis.

Journal: International journal of molecular sciences

Authors' code: itika05/NPY-GBM-transcriptomics (MIT)

Status: code verified, 14 files readable, 20 matches

[283] Code ↔ Paper doi:10.1093/braincomms/fcag255 [paper, repository]

Impaired consolidation of spatial memory during sleep in patients with leucine-rich glioma-inactivated 1-associated limbic encephalitis.

Journal: Brain communications

Authors' code: yf-neuro/LGI1-coupling-analysis (MIT)

Status: code verified, 6 files readable, 2 matches

[284] Code ↔ Paper doi:10.3389/fnimg.2026.1873040 [paper, repository]

A rapid streamline-based extension of Tractfinder for white matter tract segmentation.

Journal: Frontiers in neuroimaging

Authors' code: tractfinder/tractfinder (no license), fionaEyoung/tractfinder (no license)

Status: code verified, 14 files readable

Sunday, 5 July 2026 (1 paper)

[285] doi:10.1177/11795549261466431 [paper]

Advances and Future Expectations in Oncolytic Virus Therapy for Glioblastoma: A Systematic Review of Clinical Trials.

Journal: Clinical Medicine Insights. Oncology

Status: code on request

Saturday, 4 July 2026 (2 papers)

[286] Code ↔ Paper doi:10.1016/j.dcn.2026.101775 [paper, repository]

Neonatal brain-age models in full- and preterm infants.

Journal: Developmental cognitive neuroscience

Authors' code: lukassnoek/mvca (MIT)

Status: code verified, 21 files readable

[287] doi:10.1038/s41598-026-60334-y [paper, data]

Enhancing brain tumor detection through deep learning and explainable AI techniques.

Journal: Scientific reports

Status: data only, 2 datasets cited

Friday, 3 July 2026 (4 papers)

[288] doi:10.3892/ijmm.2026.5912 [paper, data]

<i>FLI1</i> enhances the malignant phenotype of glioma cells and exerts immunomodulatory effects through feedback crosstalk with exonic circRNA <i>FECR1</i> and interferon‑induced <i>ISG15</i>.

Journal: International journal of molecular medicine

Status: data only, 2 datasets cited

[289] doi:10.1080/21505594.2026.2697518 [paper, data]

Encephalomyocarditis virus impairs the blood-brain barrier by degrading tight junction proteins via AKT3-dependent autophagic and apoptotic pathways.

Journal: Virulence

Status: data only, 1 dataset cited

[290] doi:10.1038/s43587-026-01166-3 [paper, data]

Therapeutic targeting of the conserved region within the low-complexity domain of TDP-43 is neuroprotective and extends survival in amyotrophic lateral sclerosis mice.

Journal: Nature aging

Status: data only, 2 datasets cited

[291] doi:10.3390/cancers18132151 [paper, data]

αS-SETMAR: Inducing Protective Chaos in Glioblastoma?

Journal: Cancers

Status: data only, 1 dataset cited

Thursday, 2 July 2026 (3 papers)

[292] doi:10.1371/journal.pone.0344291 [paper, data]

Deep learning based two-way feature depiction model for brain tumor detection.

Journal: PloS one

Status: data only, 1 dataset cited

[293] Code ↔ Paper doi:10.1111/cge.70204 [paper, repository]

Phenotypic Characterization of Five Children With PACS1-NDD: Longitudinal Insights Into Development, Behavior, and Brain.

Journal: Clinical genetics

Authors' code: danizoeller/myMixed-ModelsTrajectories (no license)

Status: dead link

[294] Code ↔ Paper doi:10.1016/j.ynirp.2026.100377 [paper, repository]

Accelerated brain aging in Veterans with posttraumatic stress symptoms and mild traumatic brain injury.

Journal: Neuroimage. Reports

Authors' code: vishnubashyam/DeepBrainNet (no license)

Status: code verified, 4 files readable

Wednesday, 1 July 2026 (28 papers)

[295] Code ↔ Paper doi:10.1093/brain/awaf426 [paper, repository]

Single-nucleus multiome shows motor neuron glutamate overactivation in amyotrophic lateral sclerosis.

Journal: Brain : a journal of neurology

Authors' code: ertakeuchi/ALS_project (no license)

Status: code verified, 21 files readable, 10 matches

[296] Code ↔ Paper doi:10.1093/brain/awaf431 [paper, repository]

Behavioural and clinical biomarkers of the human bed nucleus of stria terminalis from direct neural recordings.

Journal: Brain : a journal of neurology

Authors' code: srbsonkusare/bnst_task_dynamics (no license)

Status: code verified, 9 files readable, 7 matches

[297] doi:10.1093/neuonc/noag053 [paper, data]

ONC206 demonstrates potent antitumorigenic activity and is a potential novel therapeutic strategy for high-risk medulloblastoma.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[298] Code ↔ Paper doi:10.1158/0008-5472.can-25-4018 [paper, repository]

MIF-Induced CD74+ Microglia and Macrophages Promote Progression of Brain Metastasis and Are Clinically Relevant across Central Nervous System Disorders.

Journal: Cancer research

Authors' code: osvaldogc/nextpresso1.9.2 (CC-BY-NC-ND-4.0)

Status: code verified, 15 files readable, 1 match

[299] Code ↔ Paper doi:10.1093/neuonc/noag068 [paper, repository]

PTBP1 knockdown reprograms glioma stem cells into neuronal-like cells and suppresses tumorigenesis via the DUSP5-ERK1/2 signaling pathway.

Journal: Neuro-oncology

Authors' code: YuhaoMa522/Glioma-CellCounter (no license)

Status: code verified, 4 files readable

[300] doi:10.1093/neuonc/noag080 [paper, data]

Laser interstitial thermal therapy enhances bidirectional blood-brain barrier permeability in glioblastoma.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[301] doi:10.1210/endrev/bnag008 [paper, data]

Diverse SOX3 genetic variants and their associated phenotypic spectrum in human disease.

Journal: Endocrine reviews

Status: data only, 1 dataset cited

[302] doi:10.1007/s00401-026-03050-1 [paper]

Molecular changes during AT/RT progression associated with epithelial-mesenchymal transition and extracellular matrix changes.

Journal: Acta neuropathologica

Status: data only

[303] doi:10.1111/cbdd.70354 [paper, data]

In Silico Drug Repositioning Identifies SYK Kinase Inhibitors as Potential Neuroprotective Agents for Ataxia-Telangiectasia.

Journal: Chemical biology & drug design

Status: data only, 2 datasets cited

[304] doi:10.1038/s41467-026-75063-z [paper, data]

Loss of Echs1 in neural stem and progenitor cells impairs neurogenesis via ER stress activation and lipid metabolic reprogramming.

Journal: Nature communications

Status: data only, 1 dataset cited

[305] Code ↔ Paper doi:10.1038/s41586-026-10641-1 [paper, repository]

Dual tumour-myeloid targeting of glioblastoma with GPNMB CAR-T cells.

Journal: Nature

Authors' code: NMikolajewicz/Savage-2026 (no license)

Status: code verified, 5 files readable, 5 matches

[306] Code ↔ Paper doi:10.1038/s41586-026-10671-9 [paper, repository]

Restoring cortical disinhibition improves Huntington's disease phenotypes.

Journal: Nature

Authors' code: Zenodo 20750675 (no license)

Status: dead link

[307] doi:10.1038/s43018-026-01199-y [paper, data]

IDH1-mutant vaccine in newly diagnosed astrocytoma: final analysis of the multicenter, single-arm, open-label, first-in-human phase 1 NOA16 trial.

Journal: Nature cancer

Status: data only, 1 dataset cited

[308] doi:10.1186/s13073-026-01699-7 [paper, data]

De novo variants in NPTN cause a neurodevelopmental disorder with autism and neuroplastin-PMCA hypofunction.

Journal: Genome medicine

Status: data only, 1 dataset cited

[309] Code ↔ Paper doi:10.1002/sim.70658 [paper, repository]

Predictor-Assisted Nonparametric Graphical Models With Multivariate Error-Prone Data.

Journal: Statistics in medicine

Authors' code: lchen723/RF_Graph (no license)

Status: dead link

[310] doi:10.1002/2056-4538.70106 [paper]

Mechanosensitive TRPV4 immunohistochemistry improves deep learning-based classification of ductal carcinoma in situ beyond H&E morphology.

Journal: The journal of pathology. Clinical research

Status: code on request

[311] Code ↔ Paper doi:10.1002/alz.71649 [paper, repository]

Postmortem brain MRI reveals differential associations of subcortical and limbic volumes with cortical thinning and neurodegenerative pathologies.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Pulkit-Khandelwal/purple-mri (no license), Pulkit-Khandelwal/postmortem-subcortical-limbic-pathologies (no license)

Status: code verified, 74 files readable, 11 matches

[312] Code ↔ Paper doi:10.1002/hbm.70602 [paper, repository]

Neuroimaging Correlates of Post-Stroke Pain After Ischemic Stroke: Secondary Analysis of the INSPiRE-TMS Trial.

Journal: Human brain mapping

Authors' code: netstim/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 7 matches

[313] Code ↔ Paper doi:10.1111/acer.70370 [paper, repository]

Low-Level Alcohol Consumption in Children 11-12 Years Old Is Linked to Neural Substrates Involved in Reward Processing and Inhibitory Control: Results From a Brain-Wide Association Study.

Journal: Alcohol, clinical & experimental research

Authors' code: OSF nshfb (no license)

Status: code verified, 11 files readable, 1 match

[314] doi:10.1111/ene.70699 [paper, data]

A Novel RORA Hinge-Region Variant in Adult IDDECA With Cerebellar Atrophy and Marked Response to Valproate.

Journal: European journal of neurology

Status: data only, 1 dataset cited

[315] Code ↔ Paper doi:10.1111/adb.70179 [paper, repository]

Transcriptional Response to Chronic Long-Access Fentanyl Self-Administration in Rat Habenula and Amygdala.

Journal: Addiction biology

Authors' code: LieberInstitute/fentanyl_rat_hb_amy (MIT), Zenodo 17573970 (CC-BY-4.0)

Status: code verified, 27 files readable, 12 matches

[316] doi:10.3389/ftox.2026.1783704 [paper, data]

Modular <i>in vitro</i> evaluation of buparlisib-polymeric nanomedicines in 2D and 3D models of glioblastoma.

Journal: Frontiers in toxicology

Status: data only, 1 dataset cited

[317] Code ↔ Paper doi:10.3389/fnhum.2026.1869918 [paper, repository]

Single-subject auditory ERP-BCI performance enhancement in ALS via an AI coding assistant prompt.

Journal: Frontiers in human neuroscience

Authors' code: mikito-ogino/aide-bci-analysis (no license)

Status: code verified, 36 files readable, 10 matches

[318] Code ↔ Paper doi:10.1002/cnr2.70625 [paper, repository]

Machine Learning-Based Prediction of Brain Metastasis at Initial Diagnosis in Small-Cell Lung Cancer: Model Development and SHAP Interpretation Study.

Journal: Cancer reports (Hoboken, N.J.)

Authors' code: Huangzikun/BrainMets (no license)

Status: dead link

[319] Code ↔ Paper doi:10.1111/ejn.70638 [paper, repository]

Autism Spectrum Disorder-Associated Genes Enrich in Discrete Cortical, Limbic and Cerebellar Brain Regions.

Journal: The European journal of neuroscience

Authors' code: LorenzoOdierna/Analysis-Tool-for-Local-Association-of-Neuronal-Transcript-Expression-ATLANTE (no license), LorenzoOdierna/Analysis-Tool-for-Local-Association-of-Neuronal-Transcript-Expression-ATLANTE- (no license)

Status: code verified, 2 files readable

[320] doi:10.1002/brb3.71605 [paper]

The Effects of Transcranial Magnetic Stimulation on Alcohol Craving, Efficacy, Emotion, and Cognitive Function in Patients With Alcohol Use Disorders: A Systematic Review and Meta-Analysis of Randomized Controlled Trial.

Journal: Brain and behavior

Status: code on request

[321] Code ↔ Paper doi:10.1093/cercor/bhag105 [paper, repository]

The tangential growth of the human visual cortex and maternal smoking during pregnancy.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 16268986 (Apache-2.0), jacquemontlab/shortvariants-annotation (Apache-2.0)

Status: code verified, 48 files readable, 2 matches

[322] Code ↔ Paper doi:10.1016/j.phro.2026.101056 [paper, repository]

Toward uncertainty-aware manual delineation of brain tumours using eye-tracking and image-derived features.

Journal: Physics and imaging in radiation oncology

Authors' code: gitlab.ethz.ch/bmdslab/publications/oncology/manual-segmentation-uncertainty-using-eyetracking (no license)

Status: code verified, 34 files readable, 7 matches

Tuesday, 30 June 2026 (11 papers)

[323] doi:10.1128/jvi.00656-26 [paper, data]

Neurotropism and interferon-dominated immune responses in a mouse-adapted coxsackievirus A16 infection model.

Journal: Journal of virology

Status: data only, 1 dataset cited

[324] doi:10.1172/jci195639 [paper, data]

Therapeutic delivery of microRNAs discovered to target deregulated glioblastoma pathways inhibits tumor growth in mice.

Journal: The Journal of clinical investigation

Status: code on request, 1 dataset cited

[325] doi:10.1159/000553367 [paper, data]

Sudden Traumatic Noise Exposure Induces an Altered Wave I in the Auditory Brainstem Response in Human.

Journal: Audiology & neuro-otology

Status: data only, 1 dataset cited

[326] Code ↔ Paper doi:10.1371/journal.ppat.1014315 [paper, repository]

A single Citrobacter rodentium infection in Pink1 knockout and wild-type mice leads to regional blood-brain-barrier perturbation and limited microglial activation without dopamine neuron axon terminal loss.

Journal: PLoS pathogens

Authors' code: liu-yikang/sherm-rodentskullstrip (GPL-3.0), louis-erictrudeau/trudeau-lab (MIT)

Status: code verified, 21 files readable, 5 matches

[327] Code ↔ Paper doi:10.1016/j.xcrm.2026.102904 [paper, repository]

High-dose furmonertinib as first-line treatment for untreated EGFR-mutated advanced NSCLC with central nervous system metastases: A phase 2 trial.

Journal: Cell reports. Medicine

Authors' code: broadinstitute/gatk (Apache-2.0)

Status: code verified, 2,000 files readable, 2 matches

[328] doi:10.1038/s41598-026-56101-8 [paper, data]

Topological modeling of gene expression in the brain with Huntington's disease reveals selective disruption of co-expression network.

Journal: Scientific reports

Status: data only, 1 dataset cited

[329] Code ↔ Paper doi:10.1038/s44321-026-00474-w [paper, repository]

Impaired gephyrin G-domain trimerization and phase separation in a patient with developmental epileptic encephalopathy.

Journal: EMBO molecular medicine

Authors' code: FilLieb/automated_synapse_analysis (MIT)

Status: code verified, 13 files readable, 1 match

[330] Code ↔ Paper doi:10.1093/braincomms/fcag248 [paper, repository]

Field strength-dependent sensitivity of chemical exchange saturation transfer: a methodological comparison of 3 Tesla and 7 Tesla in a clinical cohort.

Journal: Brain communications

Authors' code: milecap/GliomaCEST-3T7T (MIT)

Status: code verified, 26 files readable, 21 matches

[331] doi:10.3390/biomedicines14071484 [paper, data]

HDDF2-A Novel Patient-Derived Fibroblast Line from Huntington's Disease with Prominent Cellular Senescence and polyQ Pathology.

Journal: Biomedicines

Status: data only, 1 dataset cited

[332] Code ↔ Paper doi:10.3389/fncel.2026.1713437 [paper, repository]

Single-nucleus transcriptomics identifies cell cycle and synaptic pathway dysregulation during OPC-to-glioma progression.

Journal: Frontiers in cellular neuroscience

Authors' code: dennishuang02/bbp53n_glioma_submission (no license)

Status: code verified, 6 files readable, 4 matches

[333] Code ↔ Paper doi:10.34133/csbj.0157 [paper, repository]

MetaOmixTools: A User-Friendly Web Suite for Meta-analysis of Ranked Features and Functional Enrichment.

Journal: Computational and structural biotechnology journal

Authors' code: emekate00/metaomixtools (no license)

Status: code verified, 70 files readable, 5 matches

Monday, 29 June 2026 (5 papers)

[334] doi:10.1002/advs.76336 [paper, data]

Biodegradable Acoustic Targeting for Ultrasound-Supported Gene Therapy (BATUS) in Glioblastoma.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[335] doi:10.3389/fncel.2026.1807829 [paper, data]

Nicotine combined with estrogen activates protein kinase PKCι and TAO, while inhibiting specific MAP kinase pathways in cultured human neurons: an atlas of kinase activities for nicotine use disorder.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[336] Code ↔ Paper doi:10.3389/fonc.2026.1816015 [paper, repository]

Modality-level attribution and redundancy-aware radiomics for MRI-based differentiation of melanoma and NSCLC brain metastases.

Journal: Frontiers in oncology

Authors' code: georgeDV2002/metastasis_radiomics (BSD-3-Clause)

Status: code verified, 25 files readable, 11 matches

[337] doi:10.3390/jimaging12070288 [paper, data]

GDNet: A Robust 2.5D Multimodal MRI Brain Tumor Segmentation Framework with EMA Stabilization and Tumor-Aware Sampling.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[338] Code ↔ Paper doi:10.3390/biomedicines14071475 [paper, repository]

ETDACVO: Structural-Fidelity-Aware Evolutionary Co-Optimization for Robust and Explainable Brain Tumor MRI Classification.

Journal: Biomedicines

Authors' code: IndrakumarK/Evolutionary-Co-Optimization-of-Data-Augmentation-and-Learning-Dynamics-for-BT-MRI-Classification (other)

Status: code verified, 47 files readable, 18 matches

Saturday, 27 June 2026 (2 papers)

[339] Code ↔ Paper doi:10.1038/s41467-026-74722-5 [paper, repository]

Covalent pan-TEAD inhibitors block YAP activity and demonstrate brain penetrance in a Hippo-dependent cancer model.

Journal: Nature communications

Authors' code: broadinstitute/cdsr_models (no license)

Status: code verified, 5 files readable, 2 matches

[340] doi:10.3390/cancers18132092 [paper, data]

TGFB2 as a Prognostic Biomarker Associated with Myeloid-Enriched, Multi-Checkpoint-Activated Immunosuppression in Diffuse Glioma: A Multi-Cohort Transcriptomic Study.

Journal: Cancers

Status: code on request, 1 dataset cited

Friday, 26 June 2026 (11 papers)

[341] doi:10.1007/s10072-026-09188-w [paper, data]

Mapping integrated care for brain tumour-related epilepsy in the Italian RIN-IRCCS network.

Journal: Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology

Status: data only, 2 datasets cited

[342] Code ↔ Paper doi:10.1186/s11689-026-09713-0 [paper, repository]

DRP1 mutations associated with EMPF1 encephalopathy perturb the transcriptional profile and maturation of cortical neurons.

Journal: Journal of neurodevelopmental disorders

Authors' code: CostanzoJa/Neuronal-Analyses (MIT), mogilenko-lab/gama_vivian_drp1_bulkrnaseq (MIT), Zenodo 20213748 (MIT), rensutheart/MEL-Fiji-Plugin (no license)

Status: code verified, 118 files readable, 39 matches

[343] Code ↔ Paper doi:10.1080/19490976.2026.2693397 [paper, repository]

Gut <i>Proteobacteria</i> glycine metabolism regulates neuroplasticity, motivation, and reinstatement of cocaine self-administration in mice.

Journal: Gut microbes

Authors' code: mooredf22/quasispectral (no license)

Status: code verified, 2 files readable, 1 match

[344] doi:10.1002/advs.76340 [paper, data]

Molecular and Cellular Hallmarks of Age-Related Vestibular Hair Cell Degeneration.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[345] Code ↔ Paper doi:10.1038/s41380-026-03694-1 [paper, repository]

Targeting cortico-striatal-amygdalar networks via theta-band frontoparietal synchronization in opioid use disorder: a randomized tACS-fMRI Trial.

Journal: Molecular psychiatry

Authors' code: rkuplicki/LIBR_MOCD (no license), soleimanighazaleh/frontoparietal-tacs-oud (no license)

Status: code verified, 53 files readable, 7 matches

[346] doi:10.1038/s44321-026-00459-9 [paper, data]

Anle138b ameliorates pathological phenotypes in mouse and cellular models of Huntington's disease.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[347] Code ↔ Paper doi:10.1007/s00406-026-02302-1 [paper, repository]

Exploring the genetic correlation between inflammatory bowel disease and psychiatric disorders: insights from genome-wide association studies.

Journal: European archives of psychiatry and clinical neuroscience

Authors' code: duanxian0301/TWAS (no license)

Status: code verified, 18 files readable

[348] doi:10.1177/11769351261460625 [paper, data]

GFAP-Dependent Transcriptional Dynamics and Cellular Heterogeneity in Primary, Recurrent, and Grade III Gliomas.

Journal: Cancer informatics

Status: data only, 1 dataset cited

[349] Code ↔ Paper doi:10.1136/tsaco-2025-001974 [paper, repository]

Association of alcohol use with helmet use in cyclists: analysis of the National Trauma Data Bank.

Journal: Trauma surgery & acute care open

Authors' code: toofastdan117/TQP_bike_alcohol_helmets (no license)

Status: code verified, 5 files readable, 7 matches

[350] doi:10.3390/ijms27135758 [paper, data]

Diffusion Tensor Imaging Along the Perivascular Space (DTI-ALPS) as a Neuroimaging Biomarker of Glymphatic Function in Neurodegenerative Diseases: A Systematic Review.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[351] doi:10.7717/peerj-cs.3860 [paper, data]

Systematic review of unveiling the potential of AI using machine learning and deep learning methods in neurodegenerative diseases.

Journal: PeerJ. Computer science

Status: data only, 1 dataset cited

Thursday, 25 June 2026 (7 papers)

[352] doi:10.1159/000553173 [paper, data]

Successful MRgFUS VIM Thalamotomy for Essential Tremor Nearby Cavernous Malformation: Image Case Report.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[353] Code ↔ Paper doi:10.1016/j.stemcr.2026.102977 [paper, repository]

Integrative analysis of drug-gene signatures in human pluripotent stem cells reveals prazosin as a novel SQSTM1 regulator for ALS therapeutics.

Journal: Stem cell reports

Authors' code: maximilianh/crisporWebsite (other), usadellab/trimmomatic (GPL-3.0)

Status: code verified, 1,012 files readable, 2 matches

[354] doi:10.1038/s41467-026-73802-w [paper, data]

Karyoptosis mediates cell death and neurodegeneration upon proteotoxic stress.

Journal: Nature communications

Status: data only, 12 datasets cited

[355] Code ↔ Paper doi:10.1038/s41467-026-74124-7 [paper, repository]

Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses.

Journal: Nature communications

Authors' code: Zenodo 22040374 (MIT)

Status: code verified, 12 files readable, 1 match

[356] doi:10.1186/s40478-026-02351-6 [paper, data]

A rare missense variant impacting NEK1 kinase function is associated with ALS.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[357] doi:10.21037/jtd-2026-1-0269 [paper, data]

Silencing of BCAT1 induces ferroptosis and inhibits brain metastasis of non-small cell lung cancer via activating the cGAS-STING pathway.

Journal: Journal of thoracic disease

Status: data only, 1 dataset cited

[358] doi:10.3390/pathophysiology33030043 [paper, data]

A Differentiated SH-SY5Y Model of Hypoxic-Ischaemic Injury Reveals Dynamic Transcriptomic Responses During Reoxygenation.

Journal: Pathophysiology : the official journal of the International Society for Pathophysiology

Status: data only, 1 dataset cited

Wednesday, 24 June 2026 (12 papers)

[359] doi:10.1371/journal.pone.0350120 [paper, data]

Survival and factors associated with intensive care unit mortality among adults with impaired consciousness in Benin, a low-resource setting: A retrospective cohort study.

Journal: PloS one

Status: data only, 1 dataset cited

[360] doi:10.1126/sciadv.ady0256 [paper, data]

Isoform-specific steric zippers drive aberrant assembly and mislocalization of shortened TDP-43.

Journal: Science advances

Status: data only, 1 dataset cited

[361] doi:10.1136/jitc-2025-014421 [paper, data]

Spatial immune atlas of breast cancer brain metastasis reveals CD163<sup>+</sup> macrophage reprogramming associated with immune escape.

Journal: Journal for immunotherapy of cancer

Status: data only, 2 datasets cited

[362] Code ↔ Paper doi:10.1038/s41467-026-74153-2 [paper, repository]

Regional, functional and transcriptomic decoding of multidimensional brain structure alterations in obsessive-compulsive disorder.

Journal: Nature communications

Authors' code: biorender.com/bnwqaux (no license), ColeLab/ColeAnticevicNetPartition (other), richardajdear/AHBA_gradients (no license), csleo95/Multi-phenotype-morphometry (MIT), isebenius/MIND (no license), enigma.ini.usc.edu/ongoing/enigma-shape-analysis (no license), Zenodo 19770466 (MIT), codeocean:7065197 (no license)

Status: code verified, 102 files readable, 11 matches

[363] doi:10.1080/19490976.2026.2689121 [paper, data]

Microbiome-driven alterations in tryptophan metabolism contribute to behavioral comorbidities in the Muc2 knockout mouse model of chronic colitis.

Journal: Gut microbes

Status: data only, 1 dataset cited

[364] Code ↔ Paper doi:10.1093/braincomms/fcag235 [paper, repository]

Association between glymphatic dysfunction and glucose hypometabolism in chronic disorders of consciousness: a multimodal PET/MRI study.

Journal: Brain communications

Authors' code: gbarisano/alps (MIT)

Status: code verified, 3 files readable, 2 matches

[365] doi:10.3389/fneur.2026.1808769 [paper, data]

Pre-treatment structural brain biomarkers predict response to repetitive transcranial magnetic stimulation in subjective tinnitus.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[366] doi:10.3389/fphys.2026.1844142 [paper, data]

CRISPR/Cas9-mediated <i>PHOX2B</i> functional knock-out in IMR32 neuroblastoma cells impairs neuronal excitability through dysregulation of ion channels genes.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[367] doi:10.3390/ijms27135711 [paper]

Role of Supraspinal Neuroinflammation in Chronic Pain After Experimental Spinal Cord Injury-A Systematic Review.

Journal: International journal of molecular sciences

Status: data only

[368] Code ↔ Paper doi:10.3390/ijms27135713 [paper, repository]

Chronic Administration of Marinobufagenin in Mice Causes Hyperlocomotion and Decrease in Anxiety by Altering Monoamine Turnover Unaccompanied by Motor Deficits or Oxidative Stress.

Journal: International journal of molecular sciences

Authors' code: OSF 4rtsg (no license)

Status: code verified, 7 files readable, 10 matches

[369] Code ↔ Paper doi:10.3390/s26134004 [paper, repository]

Automated Anxiety Detection System Integrating a Brain-Computer Interface for Neurofeedback Applications.

Journal: Sensors (Basel, Switzerland)

Authors' code: colab.research.google.com/drive/1ackfhtosbynpzmgzfyyjydxcereygdrt (no license), colab.research.google.com/drive/1bwge17lzzzbqpqy--yjyly8gknistdup (no license), colab.research.google.com/drive/18uq_00ynr0mot1d6nharwoxo9rwavtny (no license)

Status: code verified

[370] doi:10.1016/j.isci.2026.116593 [paper]

WNK-SPAK-NKCC1/KCC2 pathway disrupts chloride homeostasis and drives hyperactivation of PVN-CRH neurons in essential hypertension.

Journal: iScience

Status: code on request

Tuesday, 23 June 2026 (5 papers)

[371] doi:10.1007/s11060-026-05635-y [paper]

From relapse to survival: real-world clinical impact of a multimodal approach in first-time recurrent glioblastoma : FROST: multimodal treatment for GBM recurrence.

Journal: Journal of neuro-oncology

Status: code on request

[372] doi:10.1371/journal.pone.0352320 [paper, data]

Additive effect of tDCS and neuromotor recruitment on functional recovery in chronic paraplegia: A randomized controlled trial.

Journal: PloS one

Status: data only, 1 dataset cited

[373] Code ↔ Paper doi:10.1016/j.cell.2026.05.047 [paper, repository]

An emergent disease-associated motor neuron state precedes cell death in ALS.

Journal: Cell

Authors' code: omgautier/Gautier_Blum_2026 (no license)

Status: code verified, 14 files readable, 40 matches

[374] Code ↔ Paper doi:10.1186/s40337-026-01671-1 [paper, repository]

Aberrant large- and mesoscale network segregation and integration in bulimia nervosa.

Journal: Journal of eating disorders

Authors' code: guoweiwuorgin/BN_Large_scale_network_Seg_Integ (no license)

Status: code verified, 13 files readable, 5 matches

[375] doi:10.3389/fimmu.2026.1852083 [paper, data]

Astrocyte-derived HMGB1 compromises the integrity of the blood-brain barrier through the CaM/CaMKII/AQP4 pathway and the protective function of trifluoperazine.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

Monday, 22 June 2026 (11 papers)

[376] doi:10.1371/journal.pone.0349951 [paper, data]

Disentangling crossing fibers with advanced dMRI methods reveals bundle-specific degeneration across the visual system in asymmetric glaucoma.

Journal: PloS one

Status: data only, 1 dataset cited

[377] Code ↔ Paper doi:10.1371/journal.pone.0351953 [paper, repository]

GL-Net: A knowledge-guided Gaussian-gated and layered refinement network for 3D MRI segmentation of brain gliomas.

Journal: PloS one

Authors' code: Turing17/GL-Net (no license)

Status: empty repository, 1 file readable

[378] Code ↔ Paper doi:10.1073/pnas.2531706123 [paper, repository]

Metabolism-weighted brain connectome reveals synaptic integration and vulnerability to neurodegeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SarahMorgan/Morphometric_Similarity_SZ (MIT), NeuroenergeticsLab/metabolism_weighted_centrality (MIT)

Status: code verified, 12 files readable, 12 matches

[379] Code ↔ Paper doi:10.1016/j.xgen.2026.101284 [paper, repository]

NERINE reveals rare variant associations in gene networks across phenotypes and implicates an SNCA-PRL-LRRK2 subnetwork in Parkinson's disease.

Journal: Cell genomics

Authors' code: snz20/NERINE (CC-BY-NC-ND-4.0), Zenodo 19209293 (CC-BY-4.0), snz20/RVTT (MIT), Zenodo 10627549 (CC-BY-4.0)

Status: code verified, 26 files readable, 11 matches

[380] Code ↔ Paper doi:10.1038/s41467-026-74099-5 [paper, repository]

Right amygdala ablation reduces maladaptive negative interpretation bias and symptoms in a patient with post-traumatic stress disorder.

Journal: Nature communications

Authors' code: OSF 63tym (no license), Zenodo 7486842 (MIT), neurotechcenter/vera (MIT)

Status: code verified, 999 files readable, 5 matches

[381] Code ↔ Paper doi:10.1038/s41592-026-03111-z [paper, repository]

A cloud-based miniscope for neurosurveillance of brain health and disease in freely behaving animals.

Journal: Nature methods

Authors' code: codeocean:4182092 (no license)

Status: code found, not verified yet

[382] doi:10.1186/s13195-026-02121-5 [paper, data]

HDAC7 acts as an astrocytic mediator of Aβ pathology that directly engages IKK to drive astrocyte neurotoxicity and neurodegeneration in Alzheimer's disease.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[383] Code ↔ Paper doi:10.64898/2026.06.18.26355960 [paper, repository]

Symptom-based phenotype discovery in motor neuron disease using natural language processing of electronic health records

Journal: medRxiv (preprint)

Authors' code: yabdulle/mnd-symptom-phenotyping (no license)

Status: dead link

[384] doi:10.2147/ijgm.s605071 [paper, data]

Mendelian Randomization and Single-Cell RNA Sequencing Reveal CKAP4 and PFDN5 as Tumor Cell-Specific Causal Genes for Glioblastoma.

Journal: International journal of general medicine

Status: data only, 1 dataset cited

[385] doi:10.1128/iai.00231-26 [paper, data]

Group B streptococcal membrane vesicles induce proinflammatory responses in neonatal meninges.

Journal: Infection and immunity

Status: data only, 1 dataset cited

[386] doi:10.3389/frai.2026.1849051 [paper, data]

Query-guided learning for efficient and interpretable multi-class brain tumor classification in MRI.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

Saturday, 20 June 2026 (4 papers)

[387] Code ↔ Paper doi:10.1016/j.celrep.2026.117590 [paper, repository]

Impaired behavioral inhibition in Fmr1 KO mice is linked to disrupted visual cortex theta oscillations.

Journal: Cell reports

Authors' code: chubykin/V1-HPC-PFC-Behavior-Oscillations (no license), cortex-lab/allenCCF (no license)

Status: code verified, 91 files readable, 20 matches

[388] Code ↔ Paper doi:10.1038/s41598-026-57519-w [paper, repository]

Automated segmentation of neurons and spinal cord structures in immunofluorescence images using SpineDL.

Journal: Scientific reports

Authors' code: biapy.readthedocs.io (no license), biapyx/biapy (MIT)

Status: code verified, 153 files readable, 6 matches

[389] doi:10.1038/s44319-026-00837-x [paper, data]

Psc and Su(z)2 safeguard intestinal stem cell identity and prevent chinmo-dependent tumorigenesis.

Journal: EMBO reports

Status: data only, 1 dataset cited

[390] Code ↔ Paper doi:10.1016/j.ynirp.2026.100374 [paper, repository]

Identification of abnormal neural language networks by reading "brainprints" in patients with brain tumors.

Journal: Neuroimage. Reports

Authors' code: neuroecologylab.org (no license)

Status: code verified

Friday, 19 June 2026 (4 papers)

[391] doi:10.1080/21505594.2026.2690777 [paper, data]

mmu_circ_0012122/mmu-miR-1843-5p/Sertad2 axis: A novel regulatory pathway in rabies virus infection.

Journal: Virulence

Status: data only, 3 datasets cited

[392] doi:10.1080/17501911.2026.2691031 [paper, data]

Promoter methylation-associated brain-enriched long noncoding RNAs in glioblastoma: a multi-cohort public epigenomic re-analysis.

Journal: Epigenomics

Status: data only, 1 dataset cited

[393] doi:10.1126/sciadv.ady3144 [paper, data]

Merging neural stimulation and exoskeletons to enhance sensorimotor hand functions after brain or spinal cord injury.

Journal: Science advances

Status: data only, 1 dataset cited

[394] doi:10.3389/fgene.2026.1833119 [paper]

Integrative analysis identifies Hspa5 as a key regulator of the ERS/UPR-immune axis in spinal cord injury.

Journal: Frontiers in genetics

Status: data only

Thursday, 18 June 2026 (7 papers)

[395] Code ↔ Paper doi:10.1017/s0033291726104838 [paper, repository]

Variations of structural-functional coupling in post-traumatic stress disorder are associated with underlying molecular and transcriptional features.

Journal: Psychological medicine

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 1 match

[396] doi:10.1080/07853890.2026.2662776 [paper, data]

Unveiling the cognitive fog in lung cancer patients: non-invasive exploration of blood-brain barrier disruption and brain structural changes.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[397] doi:10.1371/journal.ppat.1014314 [paper, data]

Chemo-omic pipeline enables discovery of prion synaptotoxic pathways and inhibitory drugs.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[398] doi:10.1136/bmjopen-2025-110906 [paper]

Strategic Amyotrophic Lateral Sclerosis Australia-Systems Genomics Consortium (SALSA-SGC): cohort profile.

Journal: BMJ open

Status: code on request

[399] Code ↔ Paper doi:10.1186/s40478-026-02341-8 [paper, repository]

Intrathecal (G<sub>4</sub>C<sub>2</sub>)<sub>149</sub> delivery in C9orf72-deficient mice yields mild motor dysfunction and ALS/FTD pathological hallmarks.

Journal: Acta neuropathologica communications

Authors' code: figshare 32825642 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[400] Code ↔ Paper doi:10.1016/j.isci.2026.116469 [paper, repository]

Neuronal differentiation of neuroblastoma cell lines for neurological disease modeling.

Journal: iScience

Authors' code: Zenodo 6401600 (MIT), Zenodo 13759327 (CC-BY-4.0), claupomm/rna-seq_snv_tumour_only (no license)

Status: code verified, 23 files readable, 4 matches

[401] Code ↔ Paper doi:10.1093/braincomms/fcag232 [paper, repository]

Dynamic multivariate patterns of brain structure-neuropsychiatric symptom associations in long COVID.

Journal: Brain communications

Authors' code: anaston/cca_pls_toolkit (GPL-3.0)

Status: code verified, 104 files readable

Wednesday, 17 June 2026 (9 papers)

[402] Code ↔ Paper doi:10.1080/07853890.2026.2685416 [paper, repository]

Pulmonary and cerebral damage in COVID-19 survivors: is there any association?

Journal: Annals of medicine

Authors' code: JoHof/lungmask (Apache-2.0), antonioguj/bronchinet (MIT), FAIR-Unipd/dsc-mri-toolbox (MIT)

Status: code verified, 140 files readable, 2 matches

[403] Code ↔ Paper doi:10.1038/s41586-026-10653-x [paper, repository]

A mosaic of whole-body representations on the human precentral gyrus.

Journal: Nature

Authors' code: fwillett/cvVectorStats (MIT), d-r-deo/pcg-mosaic (MIT), cffan/neural_seq_decoder (no license)

Status: code verified, 128 files readable, 25 matches

[404] doi:10.1186/s12888-026-08304-6 [paper, data]

Transcranial direct current stimulation improves reduced global BOLD-CSF coupling in patients with insomnia disorder and comorbid anxiety: a resting-state functional MRI study.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[405] Code ↔ Paper doi:10.1093/braincomms/fcag193 [paper, repository]

Acute and longitudinal magnetic resonance imaging abnormalities in antibody-mediated encephalitis.

Journal: Brain communications

Authors' code: nabilseery/Antibody-mediated-encephalitis-MRI-analysis-code (no license)

Status: code verified, 2 files readable

[406] doi:10.3390/cells15121101 [paper, data]

Compensatory Intercellular Mitochondrial Transfer Improves Bioenergetics in P301L Tau-Affected Neuronal Cells.

Journal: Cells

Status: data only, 1 dataset cited

[407] Code ↔ Paper doi:10.3390/e28060702 [paper, repository]

ICU Delirium as a Failure of Predictive Synchronization: A Two-Agent Active Inference Model.

Journal: Entropy (Basel, Switzerland)

Authors' code: DesignAInf/DELIRIUM-AND-SYNCHRONIZATION (MIT)

Status: code verified, 20 files readable, 39 matches

[408] doi:10.3390/brainsci16060644 [paper, data]

Personalized Music-Embedded Sound Therapy Based on Gating Modulation and Neural Decoupling Reduces Tinnitus Severity.

Journal: Brain sciences

Status: data only, 1 dataset cited

[409] Code ↔ Paper doi:10.3389/fphys.2026.1827824 [paper, repository]

Shao-Ma-Zhi-Jing granules alleviate Tourette Syndrome by modulating the cAMP/PI3K/AKT/NF-κB signaling pathway, T cell differentiation, microglia, and gut microbiota.

Journal: Frontiers in physiology

Authors' code: picrust/picrust2 (GPL-3.0)

Status: code verified, 37 files readable

[410] doi:10.1016/j.jgeb.2026.100724 [paper, data]

Investigating the prognostics and theranostic cell cycle-related genes of Hinokinin in high-grade glioma: an integrated network pharmacology, bioinformatics, and molecular docking approach.

Journal: Journal, genetic engineering & biotechnology

Status: data only, 2 datasets cited

Tuesday, 16 June 2026 (5 papers)

[411] doi:10.1186/s12967-026-08447-w [paper, data]

Single-cell and spatial transcriptomes reveal oligodendrocyte remodeling fatty acid metabolism microenvironment of lung cancer brain metastases.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[412] Code ↔ Paper doi:10.3390/medicina62061169 [paper, repository]

Survival Outcomes and Machine Learning-Based Prediction of 12-Month Mortality in Glioblastoma Before and During the COVID-19 Pandemic: A SEER Population-Based Study.

Journal: Medicina (Kaunas, Lithuania)

Authors' code: omerecinar/MDPI-Medicina-Manuscript-Colab-Codes (no license)

Status: code verified, 4 files readable, 5 matches

[413] doi:10.32604/or.2026.079221 [paper, data]

Single-Cell Sequencing Reveals the Heterogeneity of Glioma and Identifies IGFBP2 as A Potential Therapeutic Target.

Journal: Oncology research

Status: data only, 1 dataset cited

[414] doi:10.3389/fimmu.2026.1798003 [paper, data]

HLA DP/DRA molecule regulates systemic inflammation and neuroinflammation, aggravates cognitive impairment and long-term anxiety in murine model of sepsis-associated encephalopathy.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[415] Code ↔ Paper doi:10.3389/fneur.2026.1791834 [paper, repository]

Minimum data requirements and automated preprocessing for reliable EEG biomarkers in Rett syndrome.

Journal: Frontiers in neurology

Authors' code: ytoh2000/Rett_MinimumTime (no license)

Status: code verified, 24 files readable, 9 matches

Monday, 15 June 2026 (9 papers)

[416] Code ↔ Paper doi:10.1038/s41398-026-04142-y [paper, repository]

Phocaeicola vulgatus improves anxiety-like behavior by ameliorating amygdala neuroinflammation and the neurite impairment in IBS.

Journal: Translational psychiatry

Authors' code: MRCIEU/TwoSampleMR (other)

Status: code verified, 71 files readable, 2 matches

[417] Code ↔ Paper doi:10.1128/mbio.00863-26 [paper, repository]

Zika virus infections of human stem cell-derived cerebral organoids reveal viral lineage-specific pathogenesis responses.

Journal: mBio

Authors' code: KochInstitute-Bioinformatics/Gehrke_d7_infection (MIT)

Status: code verified, 17 files readable, 4 matches

[418] Code ↔ Paper doi:10.1371/journal.ppat.1014351 [paper, repository]

Central Nervous System T-cell immune architecture, and not HIV burden, tracks with cognition under long-term viral suppression.

Journal: PLoS pathogens

Authors' code: Zenodo 18111910 (CC-BY-4.0)

Status: empty repository

[419] Code ↔ Paper doi:10.1016/j.cell.2026.05.026 [paper, repository]

The critical role of the endogenous immune compartment after CAR T cell therapy in recurrent GBM.

Journal: Cell

Authors' code: SilverbushLab/Bivalent-CAR-T-cell-therapy-in-recurrent-GBM (MIT)

Status: code verified, 71 files readable, 30 matches

[420] doi:10.1038/s41598-026-55648-w [paper, data]

Aberrant immunomodulatory signature in β-propeller protein-associated neurodegeneration patient iPSC-derived microglia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[421] Code ↔ Paper doi:10.1038/s41591-026-04414-6 [paper, repository]

Long-term independent use of an intracortical brain-computer interface for speech and cursor control.

Journal: Nature medicine

Authors' code: Neuroprosthetics-Lab/NatMed_independent_personal_use (no license)

Status: code verified, 2 files readable

[422] doi:10.1186/s12864-026-12959-6 [paper, data]

Cestode infection is linked to transcriptional shifts in neuropeptide signalling and caste-specific ageing pathways in a social insect.

Journal: BMC genomics

Status: data only, 7 datasets cited

[423] doi:10.3390/s26123804 [paper, data]

A Centralized AI Lakehouse Framework for Brain Tumor MRI Classification and Segmentation, University KPI Forecasting, and Water Potability Prediction.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[424] Code ↔ Paper doi:10.3389/fnetp.2026.1853254 [paper, repository]

Recovery in gait and posture: a network-based approach to the assessment of rehabilitation effectiveness after spinal cord injury.

Journal: Frontiers in network physiology

Authors' code: Griga21/Moving-Composite-Analysis (no license)

Status: dead link

Sunday, 14 June 2026 (1 paper)

[425] Code ↔ Paper doi:10.1038/s41598-025-11075-x [paper, repository]

An ensemble of deep learning models with falcon optimization assisted diabetic retinopathy diagnosis on retinal fundus images.

Journal: Scientific reports

Authors' code: kaggle.com/competitions/diabetic-retinopathy-detection (no license)

Status: dead link

Saturday, 13 June 2026 (4 papers)

[426] Code ↔ Paper doi:10.1186/s40708-026-00312-2 [paper, repository]

Synergistic and redundant information dynamics exhibit dissociable alterations across schizophrenia and neurodevelopmental conditions.

Journal: Brain informatics

Authors' code: gpreti/GSP_StructuralDecouplingIndex (Apache-2.0), nitrc.org/projects/conn (no license), hinatanago/PhiID_analysis (no license)

Status: code verified, 43 files readable, 2 matches

[427] doi:10.1038/s41598-026-57800-y [paper, data]

Advancing biomedical data analytics using explainable neural network-based learning model for progressive neurodegenerative disorder diagnosis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[428] doi:10.1186/s12935-026-04341-z [paper, data]

From bioinformatics to bedside: PPBP drives glioblastoma progression under hypoxia via CXCR2/PI3K/Akt signaling and is targetable by Oenothein B.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[429] doi:10.1186/s13195-026-02110-8 [paper]

Cognitive, biomarker, and neuroimaging indices associated with traumatic encephalopathy syndrome across two independent athlete cohorts.

Journal: Alzheimer's research & therapy

Status: code on request

Friday, 12 June 2026 (3 papers)

[430] Code ↔ Paper doi:10.1371/journal.pone.0351405 [paper, repository]

Unimodal vs. multimodal deep learning for non-invasive MGMT promoter methylation prediction in glioblastoma: A systematic evaluation on the BraTS 2021 dataset.

Journal: PloS one

Authors' code: kaggle.com/competitions/rsna-miccai-brain-tumor-radiogenomic-classification (no license), freddy-oulia/MGMT_Promoter_Methylation_Prediction (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[431] Code ↔ Paper doi:10.1212/wnl.0000000000218164 [paper, repository]

Race and Ethnicity, Hypertension, and Neuroimaging Markers of Brain Aging: A Causal Mediation Analysis in the HABS-HD Study.

Journal: Neurology

Authors' code: michelle-caunca/HABS_CM_RaceEthHTNImg (no license)

Status: code verified, 12 files readable, 3 matches

[432] doi:10.3389/fimmu.2026.1837728 [paper]

Hexokinase 2 upregulation is associated with glycolytic reprogramming and neuroinflammation in hypoxic-ischemic brain damage: a therapeutic target for early intervention.

Journal: Frontiers in immunology

Status: data only

Thursday, 11 June 2026 (6 papers)

[433] doi:10.1007/s12672-026-05414-1 [paper]

Construction and validation of a model based on necroptosis-related genes for predicting glioma prognosis.

Journal: Discover oncology

Status: data only

[434] doi:10.1172/jci.insight.198842 [paper, data]

Fatty acid amide hydrolase inhibition for treatment of amyotrophic lateral sclerosis.

Journal: JCI insight

Status: data only, 2 datasets cited

[435] Code ↔ Paper doi:10.1016/j.xcrm.2026.102850 [paper, repository]

Patient-derived organoids predict personalized drug response and reveal alternative therapeutic options in glioblastoma.

Journal: Cell reports. Medicine

Authors' code: SGMedical/GBO (no license)

Status: code verified, 3 files readable, 3 matches

[436] doi:10.1007/s12017-026-08935-8 [paper]

Subgroup-Specific Associations of GRIA Genes Encoding AMPA Glutamate Receptor Subunits with Patient Survival in Medulloblastoma.

Journal: Neuromolecular medicine

Status: data only

[437] doi:10.1186/s12967-026-08385-7 [paper, data]

Dihydrotanshinone I as a novel signal transducer and activator of transcription 3 inhibitor for glioblastoma treatment.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[438] doi:10.1016/j.omton.2026.201263 [paper]

Comparative evaluation of oncolytic viruses reveals opposing preferences for glioblastoma subtypes.

Journal: Molecular therapy. Oncology

Status: code on request

Wednesday, 10 June 2026 (9 papers)

[439] doi:10.64898/2026.06.08.26355206 [paper, data]

A canary in the mind: A single baseline brain scan predicts adolescent depression and anxiety one year later

Journal: medRxiv (preprint)

Status: data only, 2 datasets cited

[440] Code ↔ Paper doi:10.1126/sciadv.aeb4265 [paper, repository]

Single-nucleus profiling reveals a core disease signature and cell type-specific vulnerabilities in early Rett syndrome.

Journal: Science advances

Authors' code: Zenodo 18462624 (CC-BY-4.0), yanl54/mecp2_hippocampus_signature (no license)

Status: code verified, 18 files readable, 5 matches

[441] Code ↔ Paper doi:10.1016/j.cell.2026.05.025 [paper, repository]

DNA repair drives cisplatin-induced neuronal death.

Journal: Cell

Authors' code: FelixKrueger/TrimGalore (GPL-3.0)

Status: code verified, 31 files readable

[442] Code ↔ Paper doi:10.1038/s41586-026-10631-3 [paper, repository]

A prognostic human brain network for diffuse midline glioma.

Journal: Nature

Authors' code: bchcohenlab/BIDS_to_CBIG_fMRI_Preproc2016 (no license), netneurolab/neuromaps (CC-BY-NC-SA-4.0), lead-dbs.org (no license), netstim/leaddbs (GPL-3.0)

Status: code verified, 2,069 files readable, 9 matches

[443] doi:10.1155/ijbi/5318118 [paper, data]

Brain Tumor Segmentation Using U-Net With ResNet50 Encoder for Enhanced MRI Analysis.

Journal: International journal of biomedical imaging

Status: data only, 2 datasets cited

[444] doi:10.3390/toxics14060504 [paper, data]

Molecular Mechanisms of 6PPD and 6PPD-Q Toxicity in Neurodegenerative Diseases: A Network Toxicology and Experimental Validation Study.

Journal: Toxics

Status: data only, 1 dataset cited

[445] doi:10.3390/genes17060683 [paper]

Differential DNA Methylation of the Serotonin Receptor Signaling and Glutamatergic Synapse Pathways in Adult Twins Born Preterm.

Journal: Genes

Status: data only

[446] Code ↔ Paper doi:10.3389/fncir.2026.1814667 [paper, repository]

A modular and flexible pipeline for intraoperative electrode reconstruction and localization in patients with brain lesions.

Journal: Frontiers in neural circuits

Authors' code: Center-For-Neurotechnology/BrainInterface3D (MIT), PerkLab/SlicerFreeSurfer (BSD-3-Clause), isl-org/MiDaS (MIT), cnr-isti-vclab/PyMeshLab (GPL-3.0)

Status: code verified, 202 files readable, 3 matches

[447] Code ↔ Paper doi:10.21037/jtd-2026-0997 [paper, repository]

Machine learning models based on XGBoost algorithm to predict prognosis of lung cancer brain metastases.

Journal: Journal of thoracic disease

Authors' code: linastro/machine-learning-models-based-on-xgboost (no license)

Status: code verified, 6 files readable, 5 matches

Tuesday, 9 June 2026 (6 papers)

[448] doi:10.5409/wjcp.v15.i2.114986 [paper]

Epidemiological trends and neurological outcomes of pediatric central nervous system infections in rural part of western India.

Journal: World journal of clinical pediatrics

Status: code on request

[449] doi:10.1159/000552886 [paper, data]

Early Metabolic Alterations Are Associated with Intraventricular Hemorrhage and Its Complications in Very Preterm Infants.

Journal: Neonatology

Status: data only, 1 dataset cited

[450] doi:10.1038/s41467-026-73852-0 [paper, data]

LRP4 is an entry receptor for multiple encephalitic alphaviruses.

Journal: Nature communications

Status: data only, 1 dataset cited

[451] doi:10.1038/s41598-026-56896-6 [paper, data]

Evaluation of a human 3D multi-spheroid model derived from SH-SY5Y cells for cytotoxicity testing.

Journal: Scientific reports

Status: data only, 1 dataset cited

[452] Code ↔ Paper doi:10.1038/s41562-026-02476-7 [paper, repository]

Genome-wide meta-analysis of quantitatively measured generalized anxiety symptoms in individuals of European ancestry.

Journal: Nature human behaviour

Authors' code: megskelton/gad-sympt-metagwas (MIT)

Status: code verified, 7 files readable, 6 matches

[453] doi:10.3390/jimaging12060255 [paper]

A Multimodal Dense Parallel Global Attention Mechanism for Brain Tumor Image Segmentation.

Journal: Journal of imaging

Status: code on request

Monday, 8 June 2026 (5 papers)

[454] doi:10.1038/s41598-026-56920-9 [paper, data]

Overexpression of miR-219 as a potential therapeutic strategy of glioblastoma cells in vitro.

Journal: Scientific reports

Status: data only, 1 dataset cited

[455] Code ↔ Paper doi:10.2196/80616 [paper, repository]

Digital Interventions Addressing Cognitive and Psychological Symptoms in Long COVID: Scoping Review of Multicomponent Approaches.

Journal: Interactive journal of medical research

Authors' code: OSF hx7ue (no license)

Status: empty repository

[456] doi:10.1038/s41598-026-54127-6 [paper, data]

Canonical autophagy remains inactive in induced pluripotent stem cells and neuronal progenitor cells following DNA damage induced by BPDE or etoposide.

Journal: Scientific reports

Status: data only, 1 dataset cited

[457] doi:10.1038/s41598-026-56607-1 [paper, data]

Flunarizine changes microRNA expression in cell cultures and in a mouse model of spinal muscular atrophy.

Journal: Scientific reports

Status: data only, 2 datasets cited

[458] doi:10.1186/s12967-026-08397-3 [paper, data]

FAM135B suppresses glioblastoma angiogenesis via stabilizing the IKK complex and inactivating the NF-κB/IL-6 signaling pathway.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

Saturday, 6 June 2026 (3 papers)

[459] doi:10.1038/s41467-026-74058-0 [paper, data]

IQGAP3 bridges matrix stiffness with glioma stem cell maintenance and radioresistance by stabilizing SOX2.

Journal: Nature communications

Status: data only, 1 dataset cited

[460] doi:10.1186/s12879-026-13704-w [paper, data]

Association of Staphylococcus aureus bloodstream infection with 7-day incident delirium in critically Ill adults: a propensity-weighted competing risk analysis.

Journal: BMC infectious diseases

Status: data only, 2 datasets cited

[461] doi:10.3390/jimaging12060251 [paper, data]

3D Deep Learning for Brain Tumor Segmentation and Survival Prediction: A Comprehensive Multi-Modal Analysis Using the BraTS2020 Dataset.

Journal: Journal of imaging

Status: data only, 1 dataset cited

Friday, 5 June 2026 (5 papers)

[462] doi:10.1007/s12672-026-05243-2 [paper]

Identification of hub mRNAs and long non-coding RNAs involved in temozolomide-resistant glioblastoma (brain cancer) cell lines.

Journal: Discover oncology

Status: data only

[463] Code ↔ Paper doi:10.1016/j.crmeth.2026.101476 [paper, repository]

Unsupervised deep learning enables blur-free resolution enhancement in two-photon microscopy.

Journal: Cell reports methods

Authors' code: HaLU-9000/TENET (no license), Zenodo 19663648 (CC-BY-4.0)

Status: code verified, 47 files readable, 5 matches

[464] Code ↔ Paper doi:10.1038/s41467-026-73858-8 [paper, repository]

A pegivirus associated with encephalitis in red-legged partridges shows neurotropism across avian species.

Journal: Nature communications

Authors' code: nicola-palmieri/TableAnalyzer (MIT), Zenodo 19233119 (CC-BY-4.0)

Status: code verified, 114 files readable

[465] doi:10.1038/s12276-026-01732-0 [paper, data]

Comprehensive proteogenomic characterization reveals clinically relevant molecular subtypes associated with medulloblastoma progression.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[466] doi:10.3390/diagnostics16111745 [paper, data]

Brain Tumor Classification and Segmentation in MR Images Using EfficientNet and U-Net++ Models.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

Thursday, 4 June 2026 (9 papers)

[467] Code ↔ Paper doi:10.1038/s41467-026-73878-4 [paper, repository]

Neural Response to Familiar Names Predicts Outcome of Comatose ICU Patients: A Prospective Observational Cohort Study.

Journal: Nature communications

Authors' code: OSF nr9aq (no license)

Status: code verified, 14 files readable, 6 matches

[468] doi:10.1038/s41598-026-55847-5 [paper, data]

Federated MobileNetV2 with ensemble meta-learning for privacy-preserving brain tumor classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[469] doi:10.1007/s00701-026-06927-y [paper]

Digital MULTIMAP: a standardization of objects and actions naming task in a french population.

Journal: Acta neurochirurgica

Status: code on request

[470] doi:10.1038/s41538-026-00914-4 [paper, data]

Green tea catechin EGCG attenuates hippocampal atrophy and cognitive impairment in obesity via autophagy signaling.

Journal: NPJ science of food

Status: data only, 1 dataset cited

[471] doi:10.1038/s41598-026-54929-8 [paper, data]

Predictors of deep brain stimulation response in patients with obsessive compulsive disorder: a systematic review and meta-analysis.

Journal: Scientific reports

Status: data only, 2 datasets cited

[472] Code ↔ Paper doi:10.1186/s12859-026-06490-4 [paper, repository]

Tissueformer: extending single-cell foundation models to predict population-level phenotypes.

Journal: BMC bioinformatics

Authors' code: ZadorLaboratory/TissueFormer (MIT), Zenodo 15595324 (GPL-3.0), zadorlaboratory/colormycells (GPL-3.0)

Status: code verified, 30 files readable, 13 matches

[473] Code ↔ Paper doi:10.1162/imag.a.1264 [paper, repository]

Data-driven subtyping and staging of ALS: A multicenter, longitudinal, deformation-based morphometry study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: BIC-MNI/minc-tools (other), VANDAlab/Preprocessing_Pipeline (no license), ucl-pond/pySuStaIn (MIT)

Status: code verified, 325 files readable, 6 matches

[474] Code ↔ Paper doi:10.1016/j.isci.2026.116242 [paper, repository]

Brain and central nervous system cancer burden in children across Asia.

Journal: iScience

Authors' code: Z-C-Q/CNS (no license)

Status: code verified, 8 files readable, 10 matches

[475] Code ↔ Paper doi:10.1093/braincomms/fcag210 [paper, repository]

Practice effects as a dynamic biomarker of early cognitive change in far-from-onset Huntington's disease.

Journal: Brain communications

Authors' code: cfranch/R-code (no license)

Status: empty repository

Wednesday, 3 June 2026 (7 papers)

[476] Code ↔ Paper doi:10.1038/s42003-026-10388-5 [paper, repository]

Hierarchical organization of tau topography across the Alzheimer's disease continuum integrates amyloid, connectome, and intrinsic molecular vulnerability.

Journal: Communications biology

Authors' code: Zenodo 20278594 (CC-BY-4.0)

Status: code verified

[477] doi:10.1007/s12672-026-05341-1 [paper, data]

Single-cell data analysis of lung cancer brain metastasis reveals SEC61G serves as a potential risk indicator.

Journal: Discover oncology

Status: data only, 1 dataset cited

[478] Code ↔ Paper doi:10.1038/s41467-026-73770-1 [paper, repository]

Non-coding structural variants disrupt FOXG1 transcriptional regulation in early neurodevelopment.

Journal: Nature communications

Authors' code: Zenodo 5653535 (MIT), linnarsson-lab/developing-human-brain (BSD-2-Clause), nf-core/cutandrun (MIT)

Status: code verified, 27 files readable, 1 match

[479] Code ↔ Paper doi:10.1038/s41586-026-10612-6 [paper, repository]

Acquired genetic and cell-state changes in IDH-mutant glioma progression.

Journal: Nature

Authors' code: broadinstitute/inferCNV (other), Kcjohnson/care-glass (MIT), Kcjohnson/care_idh_mut (MIT)

Status: code verified, 289 files readable, 40 matches

[480] doi:10.1186/s13024-026-00946-0 [paper, data]

Insulin resistance alters cortical inhibitory neurons and microglia to exacerbate Alzheimer's knock-in mouse phenotypes.

Journal: Molecular neurodegeneration

Status: data only, 7 datasets cited

[481] doi:10.1039/d6sc00011h [paper, data]

Chimeric peptide-based radiopharmaceuticals for glioblastoma imaging and therapy by targeting mHsp70 and enhancing BBB penetration.

Journal: Chemical science

Status: data only, 1 dataset cited

[482] Code ↔ Paper doi:10.3389/fncom.2026.1753444 [paper, repository]

NMDA receptor kinetics drive distinct routes to chaotic firing in pyramidal neurons.

Journal: Frontiers in computational neuroscience

Authors' code: borjkhani/Bifurcation_NMDA_FCN (MIT)

Status: code verified, 11 files readable, 26 matches

Tuesday, 2 June 2026 (6 papers)

[483] Code ↔ Paper doi:10.1371/journal.pmed.1004868 [paper, repository]

Plasma proteomic signatures of early retinal neurodegeneration in diabetes: A multi-cohort study.

Journal: PLoS medicine

Authors' code: ZOC-skl/Pro-DRN (no license)

Status: code verified, 2 files readable, 1 match

[484] doi:10.1038/s41467-026-73649-1 [paper, data]

Targeting hypothalamic SIK3 to promote weight loss and improve glycemic control in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[485] doi:10.1038/s41540-026-00754-8 [paper, data]

Systematic proteomic analysis of neuroimaging metrics identifies therapeutic targets for pituitary neuroendocrine.

Journal: NPJ systems biology and applications

Status: data only, 1 dataset cited

[486] doi:10.1038/s41598-026-55196-3 [paper, data]

SERPINI1 functions as a tumor suppressor in glioma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[487] Code ↔ Paper doi:10.1186/s11658-026-00948-2 [paper, repository]

Phosphoproteomic profiling reveals post-translational dysregulation in Huntington's disease patient-derived neurons.

Journal: Cellular & molecular biology letters

Authors' code: pircs-lab/iN_HD_PMS_analysis_2025 (no license)

Status: code verified, 10 files readable, 8 matches

[488] Code ↔ Paper doi:10.1186/s40478-026-02252-8 [paper, repository]

Temporal dynamics of neuroplasticity and neurodegeneration in the central auditory system following noise-induced hearing loss: a multimodal imaging and histological study.

Journal: Acta neuropathologica communications

Authors' code: ChariteExpMri/rodentDtiConnectomics (no license), doi:10.12751/g-node.yx9wb4 (no license)

Status: code verified, 11 files readable, 2 matches

Monday, 1 June 2026 (30 papers)

[489] doi:10.1093/brain/awag028 [paper, data]

Targeting UCHL3 attenuates pathological markers in neuronal models of Huntington's disease.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[490] doi:10.1093/ntr/ntag045 [paper, data]

The role of the orbitofrontal cortex in smoking cue-reactivity in onset phase of smoking behavior, a fMRI study in adolescents.

Journal: Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco

Status: data only, 1 dataset cited

[491] Code ↔ Paper doi:10.1158/1078-0432.ccr-25-3525 [paper, repository]

Ionizing Radiation Enhances Prognostically Significant Cellular Immunity Programs in the Brain Metastasis Microenvironment.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research

Authors' code: JiangMDA/fukumura_ccr_2026 (no license)

Status: code verified, 4 files readable, 1 match

[492] Code ↔ Paper doi:10.1158/1078-0432.ccr-25-4419 [paper, repository]

Framework for Statistical Parametric Mapping of the Interactions between Glioblastoma Location, Treatment, Prognostic Variables, and Survival Using a Phase III Trial.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research

Authors' code: BTIL-UCLA/COX_open (Apache-2.0)

Status: code verified, 50 files readable, 3 matches

[493] doi:10.1093/neuonc/noag057 [paper, data]

RAC1 regulates Sonic Hedgehog-medulloblastoma growth via GLI-mediated transcription.

Journal: Neuro-oncology

Status: data only, 2 datasets cited

[494] doi:10.1093/neuonc/noag059 [paper, data]

Combined patch-clamp electrophysiology and single-cell genomic analysis reveal spiking tumor cells at the neocortical glioblastoma interface in humans.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[495] doi:10.1002/glia.70163 [paper, data]

A Cross-Disease Microglial Transcriptional Program Characterizes Neurodegeneration and Highlights SPP1 as a Biomarker.

Journal: Glia

Status: code on request, 2 datasets cited

[496] doi:10.1093/stmcls/sxag023 [paper]

Transplantation of human stem cell-derived cone photoreceptors partially restores vision in aged rd1 mice with advanced retinal degeneration.

Journal: Stem cells (Dayton, Ohio)

Status: code on request

[497] Code ↔ Paper doi:10.1002/hbm.70545 [paper, repository]

Striatal Prediction Error Tracking Moderates the Influence of Social Exposure on Adolescent Substance Use Curiosity.

Journal: Human brain mapping

Authors' code: neurovault.org/collections/21902 (no license), Flanneryg3/FF_ProjectCode (no license)

Status: code verified

[498] Code ↔ Paper doi:10.1158/2767-9764.crc-25-0639 [paper, repository]

Interleukin-34-Induced Arg1+ Macrophages Play a Key Role in Breast Cancer Brain Metastasis.

Journal: Cancer research communications

Authors' code: codeocean:7986416 (no license), codeocean.com/widget.js (no license)

Status: code found, not verified yet

[499] doi:10.1093/bioinformatics/btag336 [paper, data]

ChromCall: assigning chromatin status to defined genomic regions using epigenomic profiling data.

Journal: Bioinformatics (Oxford, England)

Status: data only, 1 dataset cited

[500] doi:10.1371/journal.pone.0347055 [paper, data]

Protocatechuic acid prevents obesity caused by long-chain saturated fatty acid-induced inflammation in mouse microglia via inhibition of the NF-κB pathway.

Journal: PloS one

Status: data only, 1 dataset cited

[501] Code ↔ Paper doi:10.1371/journal.pcbi.1014327 [paper, repository]

Supervised deep learning with gene functional annotation for cell classification.

Journal: PLoS computational biology

Authors' code: Sun-lab/SDAN (MIT)

Status: code verified, 79 files readable, 16 matches

[502] doi:10.1038/s41419-026-08890-z [paper, data]

RET receptor tyrosine kinase promotes breast cancer metastasis to the brain and RET inhibitors pralsetinib and selpercatinib suppress breast cancer brain metastases.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[503] Code ↔ Paper doi:10.1186/s40644-026-01052-6 [paper, repository]

Microstructure mapping with time-dependent diffusion MRI differentiates primary central nervous system lymphoma from glioblastoma.

Journal: Cancer imaging : the official publication of the International Cancer Imaging Society

Authors' code: zjuzzl/prostate_mri (MIT)

Status: code verified, 2 files readable

[504] Code ↔ Paper doi:10.21203/rs.3.rs-9853460/v1 [paper, repository]

Single-nucleus multiomic atlas of ALS primary motor cortex nominates neuroprotective WDR49-expressing astrocytes

Journal: Research Square (preprint)

Authors' code: zhoujt1994/ALS_Multiome (MIT)

Status: empty repository, 2 files readable

[505] doi:10.1016/j.celrep.2026.117408 [paper, data]

NAT10-dependent N<sup>4</sup>-acetylcytidine reprograms R-loops and promotes cancer stem cell growth.

Journal: Cell reports

Status: data only, 1 dataset cited

[506] Code ↔ Paper doi:10.1002/hbm.70563 [paper, repository]

Network-Level Convergence of Adiposity-Related Gray Matter Alterations: A Coordinate-Based Connectome Mapping Meta-Analysis With Imaging Transcriptomics.

Journal: Human brain mapping

Authors' code: OSF spjzd (no license)

Status: empty repository

[507] doi:10.1002/alz.71547 [paper]

Cortical synchrony is reduced in Alzheimer's disease and relates to arousal state.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[508] doi:10.1002/cns.70854 [paper, data]

USP5-C-MAF Axis Regulates Autophagy-Dependent Neuronal Ferroptosis in Spinal Cord Injury Therapeutics.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[509] doi:10.1111/jcmm.71243 [paper]

Hierarchical Disruption of the Tryptophan-Melatonin Axis Contributes to Glioma Progression Through AKT/ERK/STAT3 Signalling.

Journal: Journal of cellular and molecular medicine

Status: code on request

[510] Code ↔ Paper doi:10.1111/acel.70577 [paper, repository]

Nuclear Enlargement as a Histological Hallmark of Skeletal Muscle Aging, Revealed by Deep Learning-Driven Analysis and Validated in Inflammatory Myopathies.

Journal: Aging cell

Authors' code: openzoom/deepzoom.py (BSD-3-Clause), tamdao216/nuclei (no license)

Status: code verified, 9 files readable

[511] doi:10.1096/fj.202601358r [paper, data]

Pharmacological Activation of NRF2 by Omaveloxolone Upregulates NRF2-Target Proteins in SMA Type I Human Fibroblasts.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[512] doi:10.1016/j.xcrm.2026.102845 [paper]

Ketogenic diet as a metabolic vehicle enhancing the therapeutic efficacy of mebendazole and devimistat in juvenile syngeneic high-grade glioma.

Journal: Cell reports. Medicine

Status: code on request

[513] Code ↔ Paper doi:10.1002/alz.71571 [paper, repository]

Vulnerability of anterior medial temporal lobe subregions to early tau-related neurodegeneration in Alzheimer's disease: Converging evidence from tau-PET and plasma p-tau217.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: pyushkevich/cmrep (GPL-3.0)

Status: code verified, 104 files readable

[514] doi:10.1016/j.dib.2026.112926 [paper, data]

Synthetic dataset of PLGA and liposome nanocarrier formulations for brain-cancer-relevant drug delivery, release, blood-brain-barrier transport, and paired cell-viability proxies.

Journal: Data in brief

Status: data only, 3 datasets cited

[515] doi:10.1093/cercor/bhag069 [paper, data]

Diencephalic integrity explains aspects of hippocampal amnesia.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[516] Code ↔ Paper doi: [paper, repository]

Developing and Validating a Machine Learning Model to Predict Brain Injury in Preterm Infants Using Multisource Data from the Early Postnatal Period

Journal: Children (Basel, Switzerland)

Authors' code: lyrperciver/PBI-APP (no license)

Status: code verified, 2 files readable, 2 matches

[517] doi:10.1111/jnc.70503 [paper, data]

Astrocytic Regulation of Aberrant Perineuronal Net Formation in Mecp2-Null Neocortex.

Journal: Journal of neurochemistry

Status: data only, 1 dataset cited

[518] Code ↔ Paper doi:10.1016/j.gutmic.2026.100006 [paper, repository]

From microbes to milestones: Gut bacterial abundances and functional pathways associate with neurodevelopment following preterm birth.

Journal: Gut microbiology

Authors' code: git.ecdf.ed.ac.uk/jbrl/microbiome-and-developmental-outcomes (no license), OSF ekdr7 (no license)

Status: code verified