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The mitochondrial unfolded protein response in human microglia disrupts neuronal-glial communication and promotes senescence.

Overview

Authors: Maria Jose Perez J1,2,3, Alicia Lam1, Christin Weissleder1,2, Federico Bertoli1,2, Hariam Raji1,2, Mariella Bosch4, Ivan Nemazanyy5, Stefanie Kalb4, Mohammed Kehili1, Insa Hirschberg4, Dario Brunetti6,7, Indra Heckenbach8, Morten Scheibye-Knudsen8, Michela Deleidi1,2
  1. Mechanisms and Therapy of Genetic Brain Diseases, Institut Imagine,Paris, France
  2. Aligning Science Across Parkinson’s (ASAP) Collaborative Research Network,Chevy Chase, MD USA
  3. Present Address: Max Planck Institute of Immunobiology and Epigenetics,Freiburg, Germany
  4. Hertie Institute for Clinical Brain Research, University of Tübingen,Tübingen, Germany
  5. Platform for Metabolic Analyses, Structure Fédérative de Recherche Necker, INSERM US24/CNRS UAR 3633,Paris, France
  6. Department of Clinical Sciences and Community Health, Excellence Department 2023–2027, University of Milan,Milan, Italy
  7. Unit of Medical Genetics and Neurogenetics, Fondazione IRCCS Istituto Neurologico ‘Carlo Besta’,Milan, Italy
  8. Department of Cellular and Molecular Medicine, Center for Healthy Aging, University of Copenhagen,Copenhagen, Denmark
Journal: Nature neuroscience, volume 29, issue 8, pages 1858-1872
Dates: received 15 September 2024; accepted 24 April 2026; published online 26 June 2026; in print 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1038/s41593-026-02320-1 · PMID 42362883 · PMCID PMC13433254 · OpenAlex W7166144197
Open access: hybrid, a free copy (OpenAlex)
Status: empty repository
Categories: human (organism), cellular / molecular (subfield)
Methods: Statistics, Smoothing, state filtering, decompositions, Single-unit activity, calcium imaging
Keywords: Neuroimmunology, Molecular neuroscience, Mitochondria, Microglia
MeSH: Cell Communication*, Cellular Senescence*, Microglia*, Mitochondria*, Neuroglia*, Neurons*, Unfolded Protein Response*, Cells, Cultured, Humans, Proteotoxic Stress (* major topic)
Topic: Endoplasmic Reticulum Stress and Disease (Cell Biology, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: Michael J. Fox Foundation for Parkinson’s Research (ASAP-000420); Deutsche Forschungsgemeinschaft (DFG) (#490761034); Neurodegenerative Disease Research (GBA-PaCTS, 01ED2005B); ERC CoG (#101003329) European Union’s Horizon Europe Research and Innovation Program through the MSCA–Doctoral Network NADIS (no. 101073251); European Molecular Biology Organization (EMBO) (ALTF 1013-2019); Innovative Minds Program–Foundation Deutsche Demenzhilfe Becas Chile-ANID 74190073 DAAD Jahresstipendien 57440918; Fondazione Telethon (Telethon Foundation) (GSA22I001); European Union’s Horizon Europe Research and Innovation Program through the MSCA–Doctoral Network NADIS (no. 101073251)
Citations: cited by 4 papers (Europe PMC); 86 references in the paper
Research resources: pMD2.G RRID:Addgene_12259, RRID:Addgene_12260, RRID:CVCL_0063, the commercial line C3 RRID:CVCL_B5P3, RRID:MMRRC_060296-UCD, Analyses were performed in Seurat RRID:SCR_001905, Fiji RRID:SCR_002285, RRID:SCR_002798, GSEA RRID:SCR_003199, Analyses were performed in Seurat RRID:SCR_007322, were performed using CellProfiler RRID:SCR_007358, RRID:SCR_008394, RRID:SCR_008520, NumPy 1.23.5 RRID:SCR_008633, RRID:SCR_015687, TensorFlow GPU 2.15.0 RRID:SCR_016345, RRID:SCR_016863, Pandas 1.2.4 RRID:SCR_018214, RRID:SCR_018771, RRID:SCR_021946, Data were normalized using SCTransform RRID:SCR_022146, integrated using Harmony RRID:SCR_022206, Keras 2.15.0 RRID:SCR_026159

Abstract

Mitochondria have evolved a specialized mitochondrial unfolded protein response (UPRmt) to maintain proteostasis and promote recovery under stress. Studies in simple organisms have shown that UPRmt activation in glial cells supports proteostasis through beneficial non-cell-autonomous communication with neurons. However, the role of mitochondrial stress responses in the human brain remains unclear. To address this gap, we investigated the cell-type-specific effects of mitochondrial proteotoxic stress using human induced pluripotent stem cell-derived neuronal and glial cultures, as well as brain organoids. Here we show that mitochondrial proteotoxic stress induces metabolic rewiring in human microglia, marked by depletion of S-adenosylmethionine and lipid remodeling, ultimately leading to a senescent phenotype. Using human neuronal–glial tricultures and microglia-containing brain organoids, we identified the specific contributions of microglia to brain senescence and mitochondrial stress-driven neurodegenerative processes. UPRmt activation disrupts microglial communication with neighboring cells, triggering inflammatory signaling and impairing proteostasis. Together, these findings reveal how impaired mitochondrial proteostasis alters intercellular networks and identify a critical role for the UPRmt in neurodegenerative disease pathogenesis.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

No file of the authors' code could be read here: it is described below, and read at its source.

Zenodo 20507096

License: CC-BY-4.0
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Size: 1 file, 0 scripts
Software Heritage: not checked
Found in: the references
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
  • 27 September 2026: the link answers (HTTP 200)
At the source:

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

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Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

Data availability

All data supporting the findings of this study are available within the article and its supplementary information files. Bulk and scRNA-seq datasets generated in this study have been deposited in the Gene Expression Omnibus (GEO) under accession numbers GSE274283 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274283) and GSE274289 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274289). Detailed experimental protocols are available on protocols.io at 10.17504/protocols.io.8epv5kbm4v1b/v1. Source data for all main and supplementary figures are provided in the accompanying files Source Data. The full collection of datasets, code, protocols, and key lab materials used and generated in this study are listed in a Key Resources Table alongside their persistent identifiers in Zenodo at 10.5281/zenodo.20507096 (ref. 86). An earlier version of this paper was posted to bioRxiv on 3 September 2024 at 10.1101/2024.09.03.610925. Previously published datasets used for comparative analyses are detailed in Methods with appropriate references. Source data are provided with this paper.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 2, 28 September 2026

  • Publisher: n/a → Nature Portfolio

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 14 authors, 4 keywords, 10 MeSH terms, 8 funders, 86 references, 23 RRIDs.

Cite

This paper

Perez J, M. J., Lam, A., Weissleder, C., Bertoli, F., Raji, H., Bosch, M., Nemazanyy, I., Kalb, S., Kehili, M., Hirschberg, I., Brunetti, D., Heckenbach, I., Scheibye-Knudsen, M., & Deleidi, M. (2026). The mitochondrial unfolded protein response in human microglia disrupts neuronal-glial communication and promotes senescence. Nature neuroscience, 29(8), 1858-1872. https://doi.org/10.1038/s41593-026-02320-1

BibTeX

@article{perezj2026mitochondrial,
author = {Perez J, Maria Jose and Lam, Alicia and Weissleder, Christin and Bertoli, Federico and Raji, Hariam and Bosch, Mariella and Nemazanyy, Ivan and Kalb, Stefanie and Kehili, Mohammed and Hirschberg, Insa and Brunetti, Dario and Heckenbach, Indra and Scheibye-Knudsen, Morten and Deleidi, Michela},
title = {{The mitochondrial unfolded protein response in human microglia disrupts neuronal-glial communication and promotes senescence}},
journal = {Nature neuroscience},
year = {2026},
month = jun,
volume = {29},
number = {8},
pages = {1858--1872},
publisher = {Nature Portfolio},
issn = {1097-6256},
doi = {10.1038/s41593-026-02320-1},
url = {https://doi.org/10.1038/s41593-026-02320-1},
pmid = {42362883},
pmcid = {PMC13433254}
}

RIS

TY - JOUR
AU - Perez J, Maria Jose
AU - Lam, Alicia
AU - Weissleder, Christin
AU - Bertoli, Federico
AU - Raji, Hariam
AU - Bosch, Mariella
AU - Nemazanyy, Ivan
AU - Kalb, Stefanie
AU - Kehili, Mohammed
AU - Hirschberg, Insa
AU - Brunetti, Dario
AU - Heckenbach, Indra
AU - Scheibye-Knudsen, Morten
AU - Deleidi, Michela
TI - The mitochondrial unfolded protein response in human microglia disrupts neuronal-glial communication and promotes senescence
T2 - Nature neuroscience
J2 - Nat Neurosci
PY - 2026
DA - 2026/06/26
VL - 29
IS - 8
SP - 1858
EP - 1872
SN - 1097-6256
PB - Nature Portfolio
DO - 10.1038/s41593-026-02320-1
UR - https://doi.org/10.1038/s41593-026-02320-1
LA - en
ER -

CSL-JSON

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