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MRI derived hippocampal asymmetry identifies hippocampal sclerosis in epilepsy surgical specimens.

Overview

Authors: Philbert Ndagijimana1, Daniel Brennan2, Russell T Shinohara3, James J Gugger1,2
ORCID iDs: James J Gugger
  1. Department of Neurology, University of Rochester, School of Medicine and Dentistry, Rochester, NY, USA
  2. Department of Neurology, University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA, USA
  3. Department of Biostatistics, Epidemiology, and Informatics, Penn Statistics in Imaging and Visualization Center, Center for AI and Data Science for Integrated Diagnostics, University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA, USA
Institutions: University of Rochester Medicine (United States); University of Rochester (United States); University of Pennsylvania (United States)
Journal: Brain communications, volume 8, issue 4, article fcag320
Dates: received 28 January 2026; accepted 10 August 2026; published online 21 August 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1093/braincomms/fcag320 · PMID 42676852 · PMCID PMC13527870 · OpenAlex W7203949080
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: structural MRI / diffusion (modality), human (organism), epilepsy (population), clinical / translational (subfield)
Methods: Statistics, Machine learning, Preprocessing
Keywords: asymmetry index, hippocampal sclerosis, epilepsy, normative modelling, morphometry
Topic: Epilepsy research and treatment (Psychiatry and Mental health, Medicine), according to OpenAlex
Funding: NINDS NIH HHS (K23 NS135101)
Citations: not cited yet (Europe PMC); 14 references in the paper

Abstract

Hippocampal sclerosis is the most common histopathological diagnosis in epilepsy surgical specimens. Although hippocampal sclerosis can be identified in vivo with brain MRI, it cannot be detected by expert qualitative review in as many as 50% of cases. Quantitative features derived from structural brain MRI, such as hippocampal shape, volume, and asymmetry features, show promise in identification of hippocampal sclerosis in vivo but have had limited translation to clinical practice partly due to the need for large normative cohorts for estimation of hippocampal pathology. Using the Imaging Database for Epilepsy And Surgery cohort, which includes brain MRI scans from 442 individuals with drug-resistant focal epilepsy who underwent epilepsy surgery and 100 healthy controls acquired on multiple scanners, we evaluated the diagnostic performance of the hippocampal asymmetry index calculated using only the participant’s hippocampal volumes against a gold standard histopathological diagnosis of hippocampal sclerosis. The hippocampal asymmetry index had high diagnostic performance (area under the curve for left hippocampal sclerosis = 0.95 (95% confidence interval 0.92–0.97); right hippocampal sclerosis = 0.96 (95% confidence interval 0.94–0.98) and was similar regardless of segmentation algorithm, data harmonization, and use of normative data. To facilitate validation, we provide an open-source software tool for the calculation of the hippocampal asymmetry index.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

No file of the authors' code could be read here: it is described below, and read at its source.

phindagijimana.github.io/neuroinsight_landing_web

License: none: the authors keep all their rights
State: the link answers, verified on 27 September 2026
Evidence: the link answers
Software Heritage: not checked
Found in: “Data availability”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
  • 27 September 2026: the link answers (HTTP 200)

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 0 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Data availability

As described in the original publication,10 the data used in this manuscript are publicly available at: https://www.cnnp-lab.com/ideas-data. To facilitate validation, we developed an open-source software tool for calculation of hippocampal asymmetry index available at: https://phindagijimana.github.io/neuroinsight_landing_web/. Codes for analysis and figure generation can also be found at this address.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 4 authors, 5 keywords, 1 funder, 14 references.

Cite

This paper

Ndagijimana, P., Brennan, D., Shinohara, R. T., & Gugger, J. J. (2026). MRI derived hippocampal asymmetry identifies hippocampal sclerosis in epilepsy surgical specimens. Brain communications, 8(4), fcag320. https://doi.org/10.1093/braincomms/fcag320

BibTeX

@article{ndagijimana2026mri,
author = {Ndagijimana, Philbert and Brennan, Daniel and Shinohara, Russell T and Gugger, James J},
title = {{MRI derived hippocampal asymmetry identifies hippocampal sclerosis in epilepsy surgical specimens}},
journal = {Brain communications},
year = {2026},
month = aug,
volume = {8},
number = {4},
pages = {fcag320},
publisher = {Oxford University Press},
issn = {2632-1297},
doi = {10.1093/braincomms/fcag320},
url = {https://doi.org/10.1093/braincomms/fcag320},
pmid = {42676852},
pmcid = {PMC13527870}
}

RIS

TY - JOUR
AU - Ndagijimana, Philbert
AU - Brennan, Daniel
AU - Shinohara, Russell T
AU - Gugger, James J
TI - MRI derived hippocampal asymmetry identifies hippocampal sclerosis in epilepsy surgical specimens
T2 - Brain communications
J2 - Brain Commun
PY - 2026
DA - 2026/08/21
VL - 8
IS - 4
SP - fcag320
SN - 2632-1297
PB - Oxford University Press
DO - 10.1093/braincomms/fcag320
UR - https://doi.org/10.1093/braincomms/fcag320
LA - en
ER -

CSL-JSON

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The tracing map gets a citation of its own once an author has validated it and it has a DOI.

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