Time-resolved aperiodic dynamics in event segmentation in attention-deficit/hyperactivity disorder.
The 9 matches
- [1] § Materials and methods › Time-resolved aperiodic signal analysis ↔ 02_Codes_EEG.zip/C1_time-resolved aperiodic signal.ipynb, lines 4–139 · score 0.95 · peak width limits, resolved aperiodic signal, 4–40 Hz, peak threshold, aperiodic mode, FieldTrip
- [2] § Materials and methods › EEG recording and preprocessing ↔ 02_Codes_EEG.zip/A1_step01_detect_flat_channels.m, lines 92–128 · score 0.83 · flat channels, BrainAmp, removed channels, Algorithm, amplified, Automagic
- [3] § Materials and methods › Statistical analyses ↔ 01_Codes_Behavior.zip/B2_LogisticRegression_perGroup_Plotting.R, lines 43–83 · score 0.73 · logistic regression, Random intercepts, Odds ratios, binomial, glmer, coefficients
- [4] § Materials and methods › Statistical analyses ↔ 01_Codes_Behavior.zip/B1_LogisticRegression_FOOOF.R, lines 85–157 · score 0.71 · Odds ratios, logistic regression, binary, multicollinearity, variance, VIF
- [5] § Results › Behaviour ↔ 01_Codes_Behavior.zip/B2_LogisticRegression_perGroup_Plotting.R, lines 86–133 · score 0.60 · logistic regression, small space, large space, scene, model, segmentation
- [6] § Results › Behaviour ↔ 01_Codes_Behavior.zip/B1_LogisticRegression_FOOOF.R, lines 85–157 · score 0.57 · large space, Odds ratios, confidence interval, logistic regression, model, Behavioural
- [7] § Results › Behaviour ↔ 01_Codes_Behavior.zip/B2_LogisticRegression_perGroup_Plotting.R, lines 135–175 · score 0.56 · large space, Odds ratios, confidence interval, logistic regression, model, Behavioural
- [8] § Materials and methods › Statistical analyses ↔ 02_Codes_EEG.zip/C1_time-resolved aperiodic signal.ipynb, lines 4–139 · score 0.54 · aperiodic model, FieldTrip, threshold, fit, error, exponent
- [9] § Results › Aperiodic activity ↔ 02_Codes_EEG.zip/C2_Statistical_Analysis_3sTW.m, lines 631–723 · score 0.51 · interaction clusters, negative clusters, SEM, bars, axis, electrodes
Paper
Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC
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The authors' code
R · 228 lines · 11 KB · no license · 3 matches
- #######################################################################################################################################
- ##################################### PLOTTING ########################################################################################
- #######################################################################################################################################
- library(Matrix)
- library(tidyverse)
- library(lme4)
- library(ggplot2)
- library(dplyr)
- library(carData)
- library(car)
- # load data
- input_HC <- read.csv("PATH/For_Rlanguage_Response_Change_HC.csv")
- input_ADHD <- read.csv("PATH/For_Rlanguage_Response_Change_ADHD.csv")
- ################ REGRESSION BASED ON NUMBER OF CHANGES ############################################
- ### HC ###
- input_HC_sum <- data.frame()
- input_HC_sum <- cbind(Subs = input_HC[,1], Resp = input_HC[,2], SumChange = input_HC[,3])
- input_HC_sum <- data.frame(input_HC_sum)
- input_HC_sum$SumChange <- factor(input_HC_sum$SumChange,levels = 0:5)
- input_HC_sum <- na.omit(input_HC_sum)
- input_HC_sum$SumChange <- as.numeric(input_HC_sum$SumChange)
- input_HC_sum$SumChange <- input_HC_sum$SumChange - 1
- # build GLMM between response and total number of changes, with random intercepts on subjects level
- Model_Sum_HC <- glmer(Resp~ SumChange + (1| Subs),
- data = input_HC_sum, family = binomial,
- control = glmerControl(optimizer = "bobyqa"), nAGQ = 10)
- summary(Model_Sum_HC)
- # To get confidence intervals (CIs)
- se_Model_Sum_HC <- sqrt(diag(vcov(Model_Sum_HC)))
- # table of estimates with 95% CI
- (tab_Model_Sum_HC <- cbind(Est = fixef(Model_Sum_HC), LL = fixef(Model_Sum_HC) - 1.96 * se_Model_Sum_HC,
- UL = fixef(Model_Sum_HC) + 1.96 * se_Model_Sum_HC))
- # To get odds ratios and order all resuls by Change names
- OddsRatio_Model_Sum_HC <- exp(tab_Model_Sum_HC)
- # get coefficients for fixed effect
- CofFix_HC = fixef(Model_Sum_HC)
- # calculate estimated probability by logistic regression formula
- EstimateY <- numeric()
- EstimateY[1] <- 1/(1+exp(-(CofFix_HC[1])))
- EstimateY[2] <- 1/(1+exp(-(CofFix_HC[1] + CofFix_HC[2]* 1 )))
- EstimateY[3] <- 1/(1+exp(-(CofFix_HC[1] + CofFix_HC[2]* 2 )))
- EstimateY[4] <- 1/(1+exp(-(CofFix_HC[1] + CofFix_HC[2]* 3 )))
- EstimateY[5] <- 1/(1+exp(-(CofFix_HC[1] + CofFix_HC[2]* 4 )))
- EstimateY[6] <- 1/(1+exp(-(CofFix_HC[1] + CofFix_HC[2]* 5 )))
- # construct another dataframe for ploting, then plot it
- ChangeNum <- c(0,1,2,3,4,5)
- Plot_table_HC <- cbind(ChangeNum,EstimateY)
- Plot_table_HC <- data.frame(Plot_table_HC)
- ### ADHD ###
- input_ADHD_sum <- data.frame()
- input_ADHD_sum <- cbind(Subs = input_ADHD[,1], Resp = input_ADHD[,2], SumChange = input_ADHD[,3])
- input_ADHD_sum <- data.frame(input_ADHD_sum)
- input_ADHD_sum$SumChange <- factor(input_ADHD_sum$SumChange,levels = 0:5)
- input_ADHD_sum <- na.omit(input_ADHD_sum)
- input_ADHD_sum$SumChange <- as.numeric(input_ADHD_sum$SumChange)
- input_ADHD_sum$SumChange <- input_ADHD_sum$SumChange - 1
- # build GLMM between response and total number of changes, with random intercepts on subjects level
- Model_Sum_ADHD <- glmer(Resp~ SumChange + (1| Subs),
- data = input_ADHD_sum, family = binomial,
- control = glmerControl(optimizer = "bobyqa"), nAGQ = 10)
- summary(Model_Sum_ADHD)
- # To get confidence intervals (CIs)
- se_Model_Sum_ADHD <- sqrt(diag(vcov(Model_Sum_ADHD)))
- # table of estimates with 95% CI
- (tab_Model_Sum_ADHD <- cbind(Est = fixef(Model_Sum_ADHD), LL = fixef(Model_Sum_ADHD) - 1.96 * se_Model_Sum_ADHD,
- UL = fixef(Model_Sum_ADHD) + 1.96 * se_Model_Sum_ADHD))
- # To get odds ratios and order all resuls by Change names
- OddsRatio_Model_Sum_ADHD <- exp(tab_Model_Sum_ADHD)
- # get coefficients for fixed effect
- CofFix_ADHD = fixef(Model_Sum_ADHD)
- # calculate estimated probability by logistic regression formula
- EstimateY <- numeric()
- EstimateY[1] <- 1/(1+exp(-(CofFix_ADHD[1])))
- EstimateY[2] <- 1/(1+exp(-(CofFix_ADHD[1] + CofFix_ADHD[2]* 1 )))
- EstimateY[3] <- 1/(1+exp(-(CofFix_ADHD[1] + CofFix_ADHD[2]* 2 )))
- EstimateY[4] <- 1/(1+exp(-(CofFix_ADHD[1] + CofFix_ADHD[2]* 3 )))
- EstimateY[5] <- 1/(1+exp(-(CofFix_ADHD[1] + CofFix_ADHD[2]* 4 )))
- EstimateY[6] <- 1/(1+exp(-(CofFix_ADHD[1] + CofFix_ADHD[2]* 5 )))
- # construct another dataframe for ploting, then plot it
- ChangeNum <- c(0,1,2,3,4,5)
- Plot_table_ADHD <- cbind(ChangeNum,EstimateY)
- Plot_table_ADHD <- data.frame(Plot_table_ADHD)
- ######### PLOT GROUPS TOGETHER #######
- Pic_P_all <- ggplot(NULL, aes(x = ChangeNum, y = EstimateY)) +
- theme(panel.grid = element_blank()) +
- geom_point(data = Plot_table_HC, shape=21,size=3, color = "#7BD389") +
- geom_line(data = Plot_table_HC, linetype=3) +
- geom_point(data = Plot_table_ADHD, shape=21,size=3, color = "#F17CB0") +
- geom_line(data = Plot_table_ADHD, linetype=3) +
- xlab(" Number of Changes in 2s Interval ") +
- ylab(" Estimated Probability of Segmentation ") +
- ylim(0,0.2) +
- ggtitle("light green - HC, pink - ADHD")
- # change background to white
- theme_set(theme_bw())
- Pic_P_all +
- geom_point(data = Plot_table_HC,color = "#7BD389")+
- geom_point(data = Plot_table_ADHD,color = "#F17CB0") +
- theme(legend.position = "top")
- ################ REGRESSION BASED ON TYPES OF CHANGE ############################################
- ### HC ###
- input_HC_each <- data.frame()
- input_HC_each <- cbind('Subs' = input_HC[,1], Resp = input_HC[,2],
- 'Character' = input_HC[,4], 'CharChar' = input_HC[,5],
- 'CharObj' = input_HC[,6], 'Temporal' = input_HC[,7],
- 'LargeSpace' = input_HC[,8], 'SmallSpace' = input_HC[,9],
- 'Cause' = input_HC[,10], 'Goal' = input_HC[,11], 'Scene' = input_HC[,12])
- input_HC_each <- as.data.frame(input_HC_each)
- # model between response and each type of situational change
- Model_Each_HC <- glmer(Resp~ Character + CharChar + CharObj + Temporal + LargeSpace +
- SmallSpace + Cause + Goal + Scene + (1 | Subs),
- data = input_HC_each, family = binomial, control = glmerControl(optimizer = "bobyqa"), nAGQ = 10)
- # evaluate if there are correlations between 9 independent variables
- vif(Model_Each_HC,merge_coef = TRUE) # all vif results are smaller than 4, so we can still use these independent variables
- summary(Model_Each_HC)
- # To get confidence intervals (CIs)
- se_Model_Each_HC <- sqrt(diag(vcov(Model_Each_HC)))
- # table of estimates with 95% CI
- (tab_Model_Each_HC <- cbind(Est = fixef(Model_Each_HC), LL = fixef(Model_Each_HC) - 1.96 * se_Model_Each_HC,
- UL = fixef(Model_Each_HC) + 1.96 * se_Model_Each_HC))
- # To get odds ratios and order all resuls by Change names
- OddsRatio_Model_Each_HC <- exp(tab_Model_Each_HC)
- ChanName <-factor(c("Intercept","Character","CharChar","CharObj","Temporal","LargeSpace","SmallSpace","Cause","Goal","Scene"),
- levels = c("Scene","Goal","Cause","SmallSpace","LargeSpace","Temporal","CharObj","CharChar","Character","Intercept"))
- Order <- c(1.8,1.6,1.4,1.2,1.0,0.8,0.6,0.4,0.2,0)
- Order <- as.character(Order)
- # OddsRatio <- cbind(ChanName = ChanName, OddsRatio)
- OddsRatio_Model_Each_HC <- data.frame(ChanName,OddsRatio_Model_Each_HC)
- OddsRatio_Model_Each_HC <- data.frame(Order,OddsRatio_Model_Each_HC)
- OddsRatio_Model_Each_HC <- OddsRatio_Model_Each_HC[2:10,] # remove intercept line
- OddsRatio_Model_Each_HC <- OddsRatio_Model_Each_HC[order(OddsRatio_Model_Each_HC$Order),]
- ### ADHD ###
- input_ADHD_each <- data.frame()
- input_ADHD_each <- cbind('Subs' = input_ADHD[,1], Resp = input_ADHD[,2],
- 'Character' = input_ADHD[,4], 'CharChar' = input_ADHD[,5],
- 'CharObj' = input_ADHD[,6], 'Temporal' = input_ADHD[,7],
- 'LargeSpace' = input_ADHD[,8], 'SmallSpace' = input_ADHD[,9],
- 'Cause' = input_ADHD[,10], 'Goal' = input_ADHD[,11], 'Scene' = input_ADHD[,12])
- input_ADHD_each <- as.data.frame(input_ADHD_each)
- # model between response and each type of situational change
- Model_Each_ADHD <- glmer(Resp~ Character + CharChar + CharObj + Temporal + LargeSpace +
- SmallSpace + Cause + Goal + Scene + (1 | Subs),
- data = input_ADHD_each, family = binomial, control = glmerControl(optimizer = "bobyqa"), nAGQ = 10)
- # evaluate if there are correlations between 9 independent variables
- vif(Model_Each_ADHD,merge_coef = TRUE) # all vif results are smaller than 4, so we can still use these independent variables
- summary(Model_Each_ADHD)
- # To get confidence intervals (CIs)
- se_Model_Each_ADHD <- sqrt(diag(vcov(Model_Each_ADHD)))
- # table of estimates with 95% CI
- (tab_Model_Each_ADHD <- cbind(Est = fixef(Model_Each_ADHD), LL = fixef(Model_Each_ADHD) - 1.96 * se_Model_Each_ADHD,
- UL = fixef(Model_Each_ADHD) + 1.96 * se_Model_Each_ADHD))
- # To get odds ratios and order all resuls by Change names
- OddsRatio_Model_Each_ADHD <- exp(tab_Model_Each_ADHD)
- ChanName <-factor(c("Intercept","Character","CharChar","CharObj","Temporal","LargeSpace","SmallSpace","Cause","Goal","Scene"),
- levels = c("Scene","Goal","Cause","SmallSpace","LargeSpace","Temporal","CharObj","CharChar","Character","Intercept"))
- Order <- c(1.8,1.6,1.4,1.2,1.0,0.8,0.6,0.4,0.2,0)
- Order <- as.character(Order)
- # OddsRatio <- cbind(ChanName = ChanName, OddsRatio)
- OddsRatio_Model_Each_ADHD <- data.frame(ChanName,OddsRatio_Model_Each_ADHD)
- OddsRatio_Model_Each_ADHD <- data.frame(Order,OddsRatio_Model_Each_ADHD)
- OddsRatio_Model_Each_ADHD <- OddsRatio_Model_Each_ADHD[2:10,] # remove intercept line
- OddsRatio_Model_Each_ADHD <- OddsRatio_Model_Each_ADHD[order(OddsRatio_Model_Each_ADHD$Order),]
- ######### plot all groups together #####
- # plot Odds ratio
- Pic_ORs_all <- ggplot(NULL, aes(x = Est, y = Order)) +
- theme(panel.grid = element_blank()) +
- geom_vline(xintercept = 1,linetype = "dashed") +
- geom_point(data = OddsRatio_Model_Each_HC, shape=21,size=3,color = "#7BD389") +
- geom_errorbar(data = OddsRatio_Model_Each_HC, aes(xmin = LL,xmax = UL), size = 0.25, width = 0.16,color = "#7BD389") +
- geom_point(data = OddsRatio_Model_Each_ADHD, shape=21,size=3,color = "#F17CB0") +
- geom_errorbar(data = OddsRatio_Model_Each_ADHD, aes(xmin = LL,xmax = UL), size = 0.25, width = 0.16,color = "#F17CB0") +
- xlab(" Odds Ratio") +
- ylab(NULL) +
- xlim(0,3) +
- ggtitle("light green - HC, pink - ADHD, green - Afree")
- # change background to white
- theme_set(theme_bw())
- Pic_ORs_all +
- geom_point(data = OddsRatio_Model_Each_HC,color = "#7BD389") +
- geom_point(data = OddsRatio_Model_Each_ADHD,color = "#F17CB0") +
- geom_hline(yintercept = 2.5) +
- geom_hline(yintercept = 4.5) +
- geom_hline(yintercept = 6.5) +
- geom_hline(yintercept = 8.5) +
- geom_hline(yintercept = 10.5) +
- geom_hline(yintercept = 12.5) +
- geom_hline(yintercept = 14.5) +
- geom_hline(yintercept = 16.5) +
- theme(axis.ticks.y = element_blank()) + ## delete all ticks in y axis
- theme(axis.text.y = element_blank())
B2_LogisticRegression_perGroup_Plotting.R, no license · at the source
Overview
- Cognitive Neurophysiology, Department of Child and Adolescent Psychiatry, Faculty of Medicine, TU Dresden, Dresden 01307, Germany
- School of Psychology, Shandong Normal University, Jinan 250014, China
- German Center for Child and Adolescent Health (DZKJ), Dresden 01307, Germany
Abstract
Attention-deficit/
Reproduced under the paper's license (CC BY), from the paper cited above.
Repository
Its files are read in the Code ↔ Paper reader above, with 9 matches between paragraphs and lines of code.
OSF wexfp
Availability: 1 check, the latest on 26 September 2026: the link answers (HTTP 200)
- 26 September 2026: the link answers (HTTP 200)
12 files
- 01_Codes_Behavior.zip/
A1_Behavioral_data_analy , MATLAB, 397 linessis_FOOOF.m - 01_Codes_Behavior.zip/
B1_LogisticRegression_FO , R, 304 lines, 2 matchesOOF.R - 01_Codes_Behavior.zip/
B2_LogisticRegression_pe , R, 228 lines, 3 matchesrGroup_Plotting.R - 01_Codes_Behavior.zip/
B3_correlations.R , R, 337 lines - 01_Codes_Behavior.zip/
B4_Gender_Age_asCovarian , R, 124 linests.R - 02_Codes_EEG.zip/
A1_step01_detect_flat_ch , MATLAB, 423 lines, 1 matchannels.m - 02_Codes_EEG.zip/
A2_step02_run_automagic. , MATLAB, 26 linesm - 02_Codes_EEG.zip/
A3_step03_final_export.m , MATLAB, 408 lines - 02_Codes_EEG.zip/
B1_VirtualMarkers_FOOOF. , MATLAB, 254 linesm - 02_Codes_EEG.zip/
B2_Segmentation_PSD_FOOO , MATLAB, 299 linesF.m - 02_Codes_EEG.zip/
C1_time-resolved aperiodic signal.ipynb , Jupyter, 152 lines, 2 matches - 02_Codes_EEG.zip/
C2_Statistical_Analysis_ , MATLAB, 1,236 lines, 1 match3sTW.m
The paper's code and data availability statement is in the Data section.
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- 9 matches between paragraphs of the paper and lines of the code (method lexical-v1);
- neither the text of the paper nor the code itself.
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Data
No dataset and no data link were found in the paper.
Data availability
The data are not publicly available due to ethical regulation. The data that support the findings of this study are available from the corresponding author upon reasonable request. The analysis code used for the behavioural and EEG analyses is available on OSF: https://
Reproduced under the paper's license (CC BY), from the paper cited above.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 3, 28 September 2026
- Funding: added Bundesministerium für Bildung und Forschung: 01GL2405B
Version 1, 27 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 6 authors, 4 keywords, 50 references.
Cite
This paper
Zhou, X., Ghorbani, F., Hommel, B., Roessner, V., Beste, C., & Prochnow, A. (2026). Time-resolved aperiodic dynamics in event segmentation in attention-deficit/
BibTeX
@article{zhou2026time,
author = {Zhou, Xianzhen and Ghorbani, Foroogh and Hommel, Bernhard and Roessner, Veit and Beste, Christian and Prochnow, Astrid},
title = {{Time-resolved aperiodic dynamics in event segmentation in attention-deficit/
journal = {Brain communications},
year = {2026},
month = sep,
volume = {8},
number = {5},
pages = {fcag351},
publisher = {Oxford University Press},
issn = {2632-1297},
doi = {10.1093/
url = {https://
pmid = {42765003},
pmcid = {PMC13590235}
}
RIS
TY - JOUR
AU - Zhou, Xianzhen
AU - Ghorbani, Foroogh
AU - Hommel, Bernhard
AU - Roessner, Veit
AU - Beste, Christian
AU - Prochnow, Astrid
TI - Time-resolved aperiodic dynamics in event segmentation in attention-deficit/
T2 - Brain communications
J2 - Brain Commun
PY - 2026
DA - 2026/
VL - 8
IS - 5
SP - fcag351
SN - 2632-1297
PB - Oxford University Press
DO - 10.1093/
UR - https://
LA - en
ER -
CSL-JSON
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"type": "article-journal",
"title": "Time-resolved aperiodic dynamics in event segmentation in attention-deficit/
"container-title": "Brain communications",
"author": [
{
"family": "Zhou",
"given": "Xianzhen"
},
{
"family": "Ghorbani",
"given": "Foroogh"
},
{
"family": "Hommel",
"given": "Bernhard"
},
{
"family": "Roessner",
"given": "Veit"
},
{
"family": "Beste",
"given": "Christian"
},
{
"family": "Prochnow",
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}
],
"container-title-short":
"volume": "8",
"issue": "5",
"page": "fcag351",
"DOI": "10.1093/
"PMID": "42765003",
"PMCID": "PMC13590235",
"ISSN": "2632-1297",
"publisher": "Oxford University Press",
"URL": "https://
"language": "en",
"issued": {
"date-parts": [
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2026,
9,
12
]
]
}
}
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