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Multi-Omics Reveals Dysregulated Neurotransmitter Systems in Aging and CNS Disorders.

Overview

Authors: Rui‐Ze Niu1,2, Meng‐Yuan Zhang1, Yan‐Ping Li2, Xiao‐Qian Zhou2, Xiao‐Lei Liu3, Jie Wu1, Wei‐Wei Wang4, Yan‐Jun Wang1, Yi Ruan1, Yu Ding4, Xiao‐Feng Zeng5, Tian‐Hao Bao1,2
  1. Affiliated Mental Health Centre of Kunming Medical University Kunming Yunnan China
  2. The Second People's Hospital of Honghe Prefecture Honghe Hospital of Yunnan Provincial Mental Hospital Honghe China
  3. Department of Neurology First Affiliated Hospital of Kunming Medical University Kunming China
  4. The Second Affiliated Hospital of Kunming Medical University Kunming Yunnan China
  5. School of Forensic Medicine Kunming Medical University Kunming Yunnan China
Journal: Aging cell, volume 25, issue 5, article e70544
Dates: received 25 July 2025; accepted 7 May 2026; published online 13 May 2026; in print May 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1111/acel.70544 · PMID 42128883 · PMCID PMC13171466 · OpenAlex W7161008166
Open access: gold, a free copy (OpenAlex)
Status: code on request
Categories: genetics / omics (modality), human (organism), cellular / molecular (subfield)
Methods: Connectivity, Statistics, Smoothing, state filtering, decompositions, Machine learning
Keywords: aging, neuropsychiatric disorders, neurotransmitters, sex, single‐nucleus RNA sequencing
MeSH: Aging*, Central Nervous System Diseases*, Neurotransmitter Agents*, Female, Humans, Male, Multiomics (* major topic)
Topic: Single-cell and spatial transcriptomics (Molecular Biology, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: National Natural Science Foundation of China (82160269, 82360275, 82160272, 82501796); Yunnan Provincial Department of Science and Technology Plan Project (202405AC350104, 2018FE001‐223, 202301AY070001‐020); Kunming Health Science and Technology Talent Training Project (2024‐SW (Reserve)‐72, 2024‐SW (Reserve)‐73); Scientific Research Project of the Provincial Clinical Medical Center of Yunnan Province (2024YNLCYXZX0278, 2024YNLCYXZX0280); Research Project on the Construction of Provincial‐Level Regional Medical Centers in Yunnan Province (HH‐202512‐005, HH‐202512‐006, HH‐202512‐008, HH‐202512‐007)
Citations: not cited yet (Europe PMC); 87 references in the paper

Abstract

The neurotransmitter system (NTS) composed of neurotransmitter receptors and transporters is associated with a variety of diseases and disorders. The identification of disease‐associated NTS features is important for understanding disease mechanisms and for prioritizing potential therapeutic targets. The differences in the composition of NTS in aging and different diseases are not well understood. Here, we show how to integrate multi‐omics data at scale, including single‐cell and spatial transcriptomic, to identify disease‐associated NTS. By integrating, annotating, and analyzing 368 publicly available single‐nucleus RNA sequencing (snRNA‐seq) datasets from 17 cohort studies, we created a snRNA‐seq dataset for the prefrontal cortex (PFC) of the human brain. The resulting dataset included > 1 million cells covering healthy individuals throughout the life course after birth and eight common neuropsychiatric disorders. We comprehensively describe the cellular heterogeneity of NTS in aging and disease, and resolve the relationship between age or sex and disease‐associated NTS. A module composed of NTS and their regulatory genes was constructed and showed disease‐associated discriminatory signal, with supportive validation from protein‐level and external datasets. In order to screen NTS networks that can simulate disease brain tissue, we conducted a comparative analysis of five disease‐related cerebral organoids and found partial similarity between patient‐derived organoids and parental brain tissues. Our work provides a multi‐disease cell atlas based on large‐scale snRNA‐seq data and analyses the disease and sex heterogeneity of NTS, which provides new insights into the mechanisms of multiple CNS diseases and sheds light on disease precision therapy against NTS.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

The paper says that its authors' code is available on request: it was not published with the paper, so there is nothing to verify.

The paper's code and data availability statement is in the Data section.

Tracing map

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Data

No dataset and no data link were found in the paper.

Data Availability Statement

The processed expression matrices used and/or analyzed during the current study and corresponding code for this research are available from the corresponding author on reasonable request.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 12 authors, 5 keywords, 7 MeSH terms, 5 funders, 87 references.

Cite

This paper

Niu, R., Zhang, M., Li, Y., Zhou, X., Liu, X., Wu, J., Wang, W., Wang, Y., Ruan, Y., Ding, Y., Zeng, X., & Bao, T. (2026). Multi-Omics Reveals Dysregulated Neurotransmitter Systems in Aging and CNS Disorders. Aging cell, 25(5), e70544. https://doi.org/10.1111/acel.70544

BibTeX

@article{niu2026multi,
author = {Niu, Rui‐Ze and Zhang, Meng‐Yuan and Li, Yan‐Ping and Zhou, Xiao‐Qian and Liu, Xiao‐Lei and Wu, Jie and Wang, Wei‐Wei and Wang, Yan‐Jun and Ruan, Yi and Ding, Yu and Zeng, Xiao‐Feng and Bao, Tian‐Hao},
title = {{Multi-Omics Reveals Dysregulated Neurotransmitter Systems in Aging and CNS Disorders}},
journal = {Aging cell},
year = {2026},
month = may,
volume = {25},
number = {5},
pages = {e70544},
publisher = {Wiley},
issn = {1474-9718},
doi = {10.1111/acel.70544},
url = {https://doi.org/10.1111/acel.70544},
pmid = {42128883},
pmcid = {PMC13171466}
}

RIS

TY - JOUR
AU - Niu, Rui‐Ze
AU - Zhang, Meng‐Yuan
AU - Li, Yan‐Ping
AU - Zhou, Xiao‐Qian
AU - Liu, Xiao‐Lei
AU - Wu, Jie
AU - Wang, Wei‐Wei
AU - Wang, Yan‐Jun
AU - Ruan, Yi
AU - Ding, Yu
AU - Zeng, Xiao‐Feng
AU - Bao, Tian‐Hao
TI - Multi-Omics Reveals Dysregulated Neurotransmitter Systems in Aging and CNS Disorders
T2 - Aging cell
J2 - Aging Cell
PY - 2026
DA - 2026/05/01
VL - 25
IS - 5
SP - e70544
SN - 1474-9718
PB - Wiley
DO - 10.1111/acel.70544
UR - https://doi.org/10.1111/acel.70544
LA - en
ER -

CSL-JSON

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