OSCR

A High-Resolution Transcriptomic Atlas of Cell Types in the Ventral Visual Thalamus.

Overview

Authors: Katelyn Stebbins1,2,3, Maira Jalil4, Parsa Khaksar1,3, Addison N Webster4, John Campbell4,5, Michael A Fox1,6,7,8
ORCID iDs: Katelyn Stebbins
  1. Fralin Biomedical Research Institute at Virginia Tech Carilion, Roanoke, Virginia, USA
  2. Graduate Program in Translational Biology, Medicine, and Health, Virginia Tech, Blacksburg, Virginia, USA
  3. Virginia Tech Carilion School of Medicine, Roanoke, Virginia, USA
  4. Neuroscience Graduate Program, University of Virginia, Charlottesville, Virginia, USA
  5. Department of Biology, University of Virginia, Charlottesville, Virginia, USA
  6. School of Neuroscience, College of Science, Virginia Tech, Blacksburg, Virginia, USA
  7. Department of Biological Sciences, College of Science, Virginia Tech, Blacksburg, Virginia, USA
  8. Department of Biology, College of Natural Sciences, University of Massachusetts Amherst, Amherst, Massachusetts, USA
Institutions: Virginia Tech (United States); University of Virginia (United States); University of Massachusetts Amherst (United States)
Journal: Journal of neurochemistry, volume 170, issue 3, article e70406
Dates: received 4 September 2025; accepted 4 February 2026; published online 12 March 2026; in print March 2026
Type: Research article · Language: English
License: CC BY-NC-ND
Identifiers: DOI 10.1111/jnc.70406 · PMID 41814933 · PMCID PMC12980112 · OpenAlex W7135023190
Open access: hybrid, a free copy (OpenAlex)
Status: dead link
Categories: genetics / omics (modality), mouse (organism)
Methods: Statistics, Smoothing, state filtering, decompositions, Evoked potentials
Keywords: GABAergic neuron, retinal ganglion cell, single‐nucleus transcriptomics, subcortical visual system, thalamus, ventral lateral geniculate nucleus
MeSH: Geniculate Bodies*, Neurons*, Transcriptome*, Ventral Thalamic Nuclei*, Visual Pathways*, Animals, Male, Mice, Mice, Inbred C57BL, Retinal Ganglion Cells (* major topic)
Topic: Retinal Development and Disorders (Molecular Biology, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: National Institutes of Health (EY033528, EY035570); NIH HHS (EY033528, EY035570)
Citations: not cited yet (Europe PMC); 59 references in the paper
Research resources: RRID:AB_10013382, RRID:AB_2336789, RRID:AB_514500, anti‐fluorescent antibodies RRID:AB_840257, RRID:Addgene_105, Wild‐type C57BL/6 and H2b‐TRAP mice RRID:IMSR_JAX:029789

Abstract

The abstract is not reproduced here: the paper's license (CC BY-NC-ND) does not allow it. Read it in the paper, at the publisher or on Europe PMC.

Code

No file of the authors' code could be read here: it is described below, and read at its source.

Zenodo 18904282

License: none: the authors keep all their rights
State: the link is dead, verified on 30 September 2026
Evidence: found in the paper
Software Heritage: not checked
Found in: “Data Availability Statement”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 30 September 2026: the link is dead (HTTP 404)
  • 30 September 2026: the link is dead (HTTP 404)
At the source: doi.org/10.5281/zenodo.18904282

The paper's code and data availability statement is in the Data section.

Tracing map

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Data

Data links

Code and data availability statement

The paper has a code and data availability statement. Its license (CC BY-NC-ND) does not allow reproducing it here; in short, from what the harvester recognized in it:

  • it points to a dataset: NCBI
  • it points to the authors' code: Zenodo 18904282
  • it says that the data are available on request

Read it in the paper: doi.org/10.1111/jnc.70406.

Versions

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Version 1, 30 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 6 authors, 6 keywords, 10 MeSH terms, 2 funders, 58 references, 6 RRIDs.

Cite

This paper

Stebbins, K., Jalil, M., Khaksar, P., Webster, A. N., Campbell, J., & Fox, M. A. (2026). A High-Resolution Transcriptomic Atlas of Cell Types in the Ventral Visual Thalamus. Journal of neurochemistry, 170(3), e70406. https://doi.org/10.1111/jnc.70406

BibTeX

@article{stebbins2026high,
author = {Stebbins, Katelyn and Jalil, Maira and Khaksar, Parsa and Webster, Addison N and Campbell, John and Fox, Michael A},
title = {{A High-Resolution Transcriptomic Atlas of Cell Types in the Ventral Visual Thalamus}},
journal = {Journal of neurochemistry},
year = {2026},
month = mar,
volume = {170},
number = {3},
pages = {e70406},
publisher = {Wiley},
issn = {0022-3042},
doi = {10.1111/jnc.70406},
url = {https://doi.org/10.1111/jnc.70406},
pmid = {41814933},
pmcid = {PMC12980112}
}

RIS

TY - JOUR
AU - Stebbins, Katelyn
AU - Jalil, Maira
AU - Khaksar, Parsa
AU - Webster, Addison N
AU - Campbell, John
AU - Fox, Michael A
TI - A High-Resolution Transcriptomic Atlas of Cell Types in the Ventral Visual Thalamus
T2 - Journal of neurochemistry
J2 - J Neurochem
PY - 2026
DA - 2026/03/01
VL - 170
IS - 3
SP - e70406
SN - 0022-3042
PB - Wiley
DO - 10.1111/jnc.70406
UR - https://doi.org/10.1111/jnc.70406
LA - en
ER -

CSL-JSON

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The tracing map gets a citation of its own once an author has validated it and it has a DOI.

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