OSCR

Generalized self-calibrating probe approach for CW tissue oximetry.

Overview

  1. Physikalisch-Technische Bundesanstalt (PTB), Berlin, Germany
  2. NIRx Medizintechnik GmbH, Berlin, Germany
Journal: Journal of biomedical optics, volume 31, issue 9, article 095001
Dates: received 2 March 2026; accepted 17 August 2026; published online 7 September 2026; in print September 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1117/1.jbo.31.9.095001 · PMID 42707729 · PMCID PMC13549469 · OpenAlex W7211883776
Open access: gold, a free copy (OpenAlex)
Status: code on request
Categories: fNIRS (modality), human (organism), methods / tools (subfield)
Methods: Spectral & time-frequency
Keywords: oximetry, spatially resolved spectroscopy, diffusion model, near-infrared spectroscopy
MeSH: Oximetry*, Algorithms, Calibration, Forearm, Humans, Muscle, Skeletal, Oxygen, Oxygen Saturation, Phantoms, Imaging, Spectroscopy, Near-Infrared (* major topic)
Journal subjects: General
Topic: Optical Imaging and Spectroscopy Techniques (Radiology, Nuclear Medicine and Imaging, Medicine), according to OpenAlex
Funding: German Federal Ministry for Economic Affairs and Energy (TransMeT 2021-II-1)
Citations: not cited yet (Europe PMC); 30 references in the paper

Abstract

Significance: Functional near-infrared spectroscopy (fNIRS) and oximetry are important noninvasive methods to investigate physiological processes and states in the human brain and muscle tissue. Self-calibrating probe methods combine two light sources with typically two detectors to improve the stability of continuous-wave (CW) devices, but so far are limited to fully symmetric geometries.

Aim: We developed a generalized self-calibrating probe approach to improve accuracy and stability in CW oximetry for arbitrary configurations of two light sources and detectors.

Approach: We used the diffusion theory of light transport to derive the effective attenuation coefficient from self-calibrating probes with arbitrary asymmetric source-detector configurations in reflection. The theory was validated by measurements on tissue-like reference phantoms and by a vascular occlusion test on the forearm muscle of a healthy subject using a dual-wavelength CW fNIRS imager. Results were compared with conventional analysis by spatially resolved spectroscopy (SRS). Time-domain measurements served as a reference.

Results: The phantom studies with the generalized self-calibrating probe approach provided accurate results for effective attenuation and oxygen saturation for the wide variety of source-detector configurations examined. Results from the SRS method showed a slightly larger spread. When submillimeter shifts of the source positions were neglected in the data analysis, large errors were observed in oxygen saturation for both methods. The vascular occlusion test showed good agreement between the self-calibrating approach and the time-domain reference data. Oxygenation profiles from SRS differed strongly across the source-detector combinations, with significant deviations already for the baseline saturation. When CW measurements were analyzed using literature values for the tissue scattering properties, systematic shifts of the oxygen saturation occured. The shifts remain small when the ratio of the reduced scattering coefficients at the two wavelengths of the CW device is close to the true tissue value.

Conclusions: The proposed generalized self-calibrating approach enables quantification of oxygen saturation in vivo for a wide variety of source-detector configurations whereby a good estimate of the ratio of the tissue scattering properties at the two wavelengths is required. Our single-case study shows the potential of the self-calibrating approach to considerably improve the accuracy and stability of CW oximetry for the large dynamic range of a vascular occlusion compared with conventional measurements using SRS with a single light source.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

The paper says that its authors' code is available on request: it was not published with the paper, so there is nothing to verify.

The paper's code and data availability statement is in the Data section.

Tracing map

A tracing map links a paper to the code its authors published: this paper has none (its code is available on request), so it has no map.

Data

No dataset and no data link were found in the paper.

Code and Data Availability

The data that support the findings of this study are available from the corresponding author upon reasonable request.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 4 authors, 4 keywords, 10 MeSH terms, 1 funder, 30 references.

Cite

This paper

Motamed Jahromi, L., Yang, L., von Lühmann, A., & Grosenick, D. (2026). Generalized self-calibrating probe approach for CW tissue oximetry. Journal of biomedical optics, 31(9), 095001. https://doi.org/10.1117/1.jbo.31.9.095001

BibTeX

@article{motamedjahromi2026generalized,
author = {Motamed Jahromi, Leila and Yang, Lin and von Lühmann, Alexander and Grosenick, Dirk},
title = {{Generalized self-calibrating probe approach for CW tissue oximetry}},
journal = {Journal of biomedical optics},
year = {2026},
month = sep,
volume = {31},
number = {9},
pages = {095001},
publisher = {Society of Photo-Optical Instrumentation Engineers},
issn = {1083-3668},
doi = {10.1117/1.jbo.31.9.095001},
url = {https://doi.org/10.1117/1.jbo.31.9.095001},
pmid = {42707729},
pmcid = {PMC13549469}
}

RIS

TY - JOUR
AU - Motamed Jahromi, Leila
AU - Yang, Lin
AU - von Lühmann, Alexander
AU - Grosenick, Dirk
TI - Generalized self-calibrating probe approach for CW tissue oximetry
T2 - Journal of biomedical optics
J2 - J Biomed Opt
PY - 2026
DA - 2026/09/07
VL - 31
IS - 9
SP - 095001
SN - 1083-3668
PB - Society of Photo-Optical Instrumentation Engineers
DO - 10.1117/1.jbo.31.9.095001
UR - https://doi.org/10.1117/1.jbo.31.9.095001
LA - en
ER -

CSL-JSON

{
"id": "10.1117/1.jbo.31.9.095001",
"type": "article-journal",
"title": "Generalized self-calibrating probe approach for CW tissue oximetry",
"container-title": "Journal of biomedical optics",
"author": [
{
"family": "Motamed Jahromi",
"given": "Leila"
},
{
"family": "Yang",
"given": "Lin"
},
{
"family": "von Lühmann",
"given": "Alexander"
},
{
"family": "Grosenick",
"given": "Dirk"
}
],
"container-title-short": "J Biomed Opt",
"volume": "31",
"issue": "9",
"page": "095001",
"DOI": "10.1117/1.jbo.31.9.095001",
"PMID": "42707729",
"PMCID": "PMC13549469",
"ISSN": "1083-3668",
"publisher": "Society of Photo-Optical Instrumentation Engineers",
"URL": "https://doi.org/10.1117/1.jbo.31.9.095001",
"language": "en",
"issued": {
"date-parts": [
[
2026,
9,
7
]
]
}
}

Similar papers

The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.

[1] doi:10.1117/1.nph.13.s3.s32602 [code]
Cedalion tutorial: a Python-based framework for comprehensive analysis of multimodal fNIRS and DOT from the lab to the everyday world.
Journal: Neurophotonics
In common: fNIRS, methods / tools, 1 reference, author Alexander von Lühmann
[2] doi:10.1117/1.nph.13.2.025001 [code]
Surface-based image reconstruction optimization for high-density functional near-infrared spectroscopy.
Journal: Neurophotonics
In common: fNIRS, 1 reference, author Alexander von Lühmann
[3] doi:10.1117/1.nph.13.s3.s32603 [code]
SNIRF2BIDS: a GUI-based tool for converting functional near-infrared spectroscopy data to the Brain Imaging Data Structure in R.
Journal: Neurophotonics
In common: fNIRS, methods / tools, 1 reference
[4] doi:
Material context moderates the occupation-adjusted association between Visualization and prefrontal hemodynamics during naturalistic design: an exploratory wearable fNIRS study
Journal: Frontiers in neuroergonomics
In common: fNIRS, 1 reference
[5] doi:10.1111/psyp.70397 [code]
Cortical Contributions to Attentional Orienting and Response Cancellation in Action Stopping.
Journal: Psychophysiology
In common: fNIRS, 1 reference
[6] doi:10.1371/journal.pone.0343481
Food preference and gender are associated with medial/frontopolar prefrontal regions functional near-infrared spectroscopy responses during eating: An exploratory study in young adults.
Journal: PloS one
In common: fNIRS, 1 reference
[7] doi:10.1117/1.nph.13.3.035009
Single-subject detection of speech network activation using functional near-infrared spectroscopy.
Journal: Neurophotonics
In common: fNIRS, 1 reference
[8] doi:10.1002/brb3.71536
Altered Dorsolateral Prefrontal Activation in Response to Verbal Fluency Task and Whole-Brain Resting-State Functional Connectivity Strength in Acute Carbon Monoxide Poisoning.
Journal: Brain and behavior
In common: fNIRS, 1 reference
[9] doi:10.1111/desc.70188
Contextual Transparency Supports Cognitive Control by Reducing Prefrontal Activation and Enhancing Cue Prioritization in Children.
Journal: Developmental science
In common: fNIRS, 1 reference
[10] doi:10.3389/fpsyg.2026.1746761 [code]
<i>From concept to proof:</i> developing a neurofeedback-fNIRS protocol to train self-regulation for music performance anxiety in adolescent musicians.
Journal: Frontiers in psychology
In common: fNIRS, 1 reference

Contribute

The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Request its removal

To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).

Discussion, reproductions, activity

Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.

Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.

Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.