methods / tools

Subfield: 373 papers with a page, 244 of them with their authors' code.

Saturday, 26 September 2026 (1 paper)

[1] doi: [paper, data]

NeuroTrustNet: a cost-effective multimodal ensemble framework for brain tumor classification under cross-dataset variability

Journal: Frontiers in artificial intelligence

Status: data only, 4 datasets cited

Friday, 25 September 2026 (1 paper)

[2] Code ↔ Paper doi:10.7554/elife.110588 [paper, repository]

Opening the black box toward a modular approach to spike sorting.

Journal: eLife

Authors' code: Zenodo 20407862 (CC-BY-4.0), SpikeInterface/sorting_components_benchmark_paper (MIT), SpikeInterface/spikeinterface (MIT)

Status: code verified, 672 files readable, 23 matches

Thursday, 17 September 2026 (1 paper)

[3] Code ↔ Paper doi:10.1162/imag.a.1362 [paper, repository]

Human fMRI at 11.7T: Assessing feasibility, stability, and reliability on the Iseult scanner.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zaineb18/tristan_pipeline (MIT)

Status: code verified, 44 files readable, 11 matches

Tuesday, 15 September 2026 (1 paper)

[4] Code ↔ Paper doi:10.1162/imag.a.1352 [paper, repository]

Brain-age in ultra-low-field MRI: How well does it work?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: james-cole/brainageR (LGPL-3.0), Zenodo 3476365 (other-open), LemuelPuglisi/SynthBA (no license)

Status: code verified, 15 files readable, 2 matches

Friday, 11 September 2026 (2 papers)

[5] Code ↔ Paper doi:10.1162/imag.a.1366 [paper, repository]

MICAFlow: Fast and robust MRI preprocessing bridging research neuroimaging and clinical practice.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MICA-MNI/MICAFlow (GPL-3.0), mica-mni.github.io/micaflow (no license), MICA-MNI/MICAFlow-Models (no license), MICA-MNI/LAMAReg (MIT), MICA-MNI/LAMAR-Models (no license)

Status: code verified, 94 files readable, 17 matches

[6] Code ↔ Paper doi:10.1038/s41598-026-68186-2 [paper, repository]

NeuroStream: spectral-spatio-temporal deep learning for visual stimulus classification from EEG.

Journal: Scientific reports

Authors' code: aim97/Visual-brain-study (GPL-3.0)

Status: code verified, 59 files readable, 10 matches

Wednesday, 9 September 2026 (1 paper)

[7] doi:10.1371/journal.pone.0347189 [paper, data]

Design and validation of a modular smart headband with embroidered electrodes for comfortable EEG monitoring.

Journal: PloS one

Status: data only, 1 dataset cited

Tuesday, 8 September 2026 (2 papers)

[8] doi:10.1038/s41598-026-68506-6 [paper, data]

Frequency-aware transformer networks for robust and generalizable EEG-based seizure detection.

Journal: Scientific reports

Status: data only, 1 dataset cited

[9] Code ↔ Paper doi:10.1371/journal.pone.0357448 [paper, repository]

Anatomy-aware, label-informed approach improves image registration for challenging datasets.

Journal: PloS one

Authors' code: raroston/labelImageRegistration_Comparison (no license)

Status: code verified, 8 files readable, 3 matches

Monday, 7 September 2026 (1 paper)

[10] doi:10.1117/1.jbo.31.9.095001 [paper]

Generalized self-calibrating probe approach for CW tissue oximetry.

Journal: Journal of biomedical optics

Status: code on request

Friday, 4 September 2026 (2 papers)

[11] doi:10.3389/fonc.2026.1928589 [paper, data]

LiteFreqMamba:lightweight frequency-enhanced Mamba for efficient 3D brain tumor segmentation.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[12] Code ↔ Paper doi:10.1007/s00429-026-03189-3 [paper, repository]

Orchestrating neuroimaging data processing using the 'Snakemake' workflow manager.

Journal: Brain structure & function

Authors' code: unimelbmdap/neuroimaging_containers (no license), khanlab/snakebids (MIT)

Status: code verified, 97 files readable

Thursday, 3 September 2026 (2 papers)

[13] Code ↔ Paper doi:10.3389/fsysb.2026.1873899 [paper, repository]

A systems microbiology framework for reproducible multi-dataset omics integration with application to long COVID.

Journal: Frontiers in systems biology

Authors' code: steppenwolf0/longCOVIDMCCREFS (MIT)

Status: code verified, 35 files readable, 8 matches

[14] Code ↔ Paper doi:10.1371/journal.pcbi.1014672 [paper, repository]

Robust circular cluster-based statistics for respiration-brain coupling.

Journal: PLoS computational biology

Authors' code: LeonardoRicci/iaaft (GPL-3.0), teresaberther/respmethods (no license)

Status: code verified, 42 files readable, 13 matches

Tuesday, 1 September 2026 (4 papers)

[15] Code ↔ Paper doi:10.1093/bib/bbag490 [paper, repository]

Systematic benchmarking and optimal strategy selection of cross-species integration methods.

Journal: Briefings in bioinformatics

Authors' code: figshare 31976259 (CC-BY-4.0)

Status: code verified, 37 files readable, 9 matches

[16] Code ↔ Paper doi:10.1186/s40478-026-02415-7 [paper, repository]

A standardized framework resolves ambiguity in motor neuron loss across neurodegenerative diseases.

Journal: Acta neuropathologica communications

Authors' code: a-l-norman/SMN-delta-7-meta-analysis-R-code (no license), GerstnerF/Counting-Simulation (no license)

Status: code verified, 4 files readable

[17] Code ↔ Paper doi:10.1007/s12021-026-09814-0 [paper, repository]

Application of Machine Learning Models to Identify Differences in Neural Electrophysiological Properties Across Estrous Cycle Phases.

Journal: Neuroinformatics

Authors' code: doi:10.5061/dryad.k0p2ngfgm (no license), Armaan-Raina/Estrous-Phase-Classification (MIT)

Status: code verified, 3 files readable, 4 matches

[18] Code ↔ Paper doi:10.1002/nbm.70368 [paper, repository]

Intra-MRI Head Motion Tracking and Correction: A Quantitative In Vivo Evaluation Framework.

Journal: NMR in biomedicine

Authors' code: zzariry/pyMocoKit (MIT)

Status: code verified, 17 files readable

Monday, 31 August 2026 (4 papers)

[19] Code ↔ Paper doi:10.1002/advs.77003 [paper, repository]

SemanticST: A Scalable Multi-Contextual Graph Learning Framework for Uncovering Spatial Niches and Robust Multi-Sample Integration in Spatial Transcriptomics.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: roxana9/SemanticST (MIT)

Status: code verified, 25 files readable, 9 matches

[20] doi:10.1038/s41597-026-08133-y [paper, data]

A neuroimaging atlas of the nigrosomes in the substantia nigra based on 3D histology.

Journal: Scientific data

Status: data only, 1 dataset cited

[21] doi:10.3390/diagnostics16172806 [paper]

Brain Tumor Segmentation and Grading on MRI Using Deep Learning: A Systematic Literature Review and Benchmark-Driven Comparative Analysis.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request

[22] doi:10.3389/frai.2026.1849571 [paper, data]

NeuroPlast: a learnable activation function evaluated under knowledge distillation for medical image classification.

Journal: Frontiers in artificial intelligence

Status: data only, 4 datasets cited

Friday, 28 August 2026 (3 papers)

[23] Code ↔ Paper doi:10.1038/s41598-026-61605-4 [paper, repository]

Learning precise segmentation of neurofibrillary tangles from rapid manual point annotations.

Journal: Scientific reports

Authors' code: keiserlab/tangle-tracer (MIT)

Status: code verified, 31 files readable, 16 matches

[24] Code ↔ Paper doi:10.3389/fnhum.2026.1895016 [paper, repository]

A confidence-gated source selection strategy for cross-session transfer in brain-computer interfaces.

Journal: Frontiers in human neuroscience

Authors' code: Yiming-S/MSDA-Bench (MIT), Yiming-S/CrossPython (MIT)

Status: code verified, 47 files readable, 9 matches

[25] Code ↔ Paper doi:10.3390/s26175444 [paper, repository]

The Deep-Match Framework for Event-Related Potential Detection in EEG.

Journal: Sensors (Basel, Switzerland)

Authors' code: Marower/DeepMF_ERP_Detection_in_EEG-main (MIT)

Status: code verified, 16 files readable, 5 matches

Thursday, 27 August 2026 (3 papers)

[26] Code ↔ Paper doi:10.1371/journal.pone.0355187 [paper, repository]

Improving corrosion depth estimation in buried pipelines using SMOTE-integrated machine and deep learning models.

Journal: PloS one

Authors' code: supp:PMC13521352/pone.0355187.s001.zip (no license)

Status: empty repository

[27] doi:10.1016/j.mex.2026.104125 [paper, data]

Target-Session early stopping for cross-session EEG mental workload classification: a reusable deployment-oriented method.

Journal: MethodsX

Status: data only, 1 dataset cited

[28] doi:10.3390/diagnostics16172746 [paper]

Benchmarking Synolitic Graphs for Autism Classification from Multisite Resting-State fMRI.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request

Wednesday, 26 August 2026 (3 papers)

[29] doi:10.1186/s42492-026-00230-4 [paper, data]

Hierarchical two-stage ensemble of dilated U-net models for brain tumor segmentation.

Journal: Visual computing for industry, biomedicine, and art

Status: data only, 1 dataset cited

[30] Code ↔ Paper doi:10.1126/sciadv.aed3650 [paper, repository]

Truthful visualizations for mass spectrometry imaging enable high-spatial-resolution interactive <i>m/z</i> mapping and exploration.

Journal: Science advances

Authors' code: Zenodo 19465293 (MIT)

Status: code verified, 96 files readable, 2 matches

[31] Code ↔ Paper doi:10.3390/s26175388 [paper, repository]

Self-Supervised Stacked Masked Denoising Autoencoder (S<sup>2</sup>MDAE) for Brain MRI Denoising and Feature Learning.

Journal: Sensors (Basel, Switzerland)

Authors' code: limou66/S2MDAE (no license)

Status: code verified, 5 files readable, 5 matches

Monday, 24 August 2026 (3 papers)

[32] Code ↔ Paper doi:10.1523/eneuro.0370-25.2026 [paper, repository]

Pretraining for Large-Scale Functional Connectome Fingerprinting Supports Generalization and Transfer Learning in Functional Neuroimaging.

Journal: eNeuro

Authors' code: OSF wfdkx (no license)

Status: code verified, 2 files readable, 5 matches

[33] Code ↔ Paper doi:10.1007/s11682-026-01191-1 [paper, repository]

Enhancing reproducibility in neuroimaging with containerized archival.

Journal: Brain imaging and behavior

Authors' code: Zenodo 14593034 (CC-BY-4.0), Zenodo 14586026 (CC-BY-4.0), Zenodo 14618566 (CC-BY-4.0)

Status: code verified

[34] Code ↔ Paper doi:10.1038/s41592-026-03194-8 [paper, repository]

Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering.

Journal: Nature methods

Authors' code: SpatialHackathon/SACCELERATOR (MIT), SpatialHackathon/SpaceHack2023_study (MIT), Zenodo 15487520 (CC-BY-4.0)

Status: code verified, 129 files readable, 20 matches

Friday, 21 August 2026 (2 papers)

[35] Code ↔ Paper doi:10.1371/journal.pone.0354976 [paper, repository]

Improved motor imagery BCI performance via task-unaware compression in the BELT Bayesian Edge-Cloud architecture.

Journal: PloS one

Authors' code: adanayi/BELT (GPL-3.0)

Status: code verified, 11 files readable, 9 matches

[36] Code ↔ Paper doi:10.1038/s41467-026-76939-w [paper, repository]

HIPPIE: a generative model for electrophysiological analysis across species, technologies, and modalities.

Journal: Nature communications

Authors' code: huggingface.co/jesusgf23/hippie (apache), braingeneers/HIPPIE (BSD-3-Clause), JesusGF1/hippie_benchmarking_release (BSD-3-Clause), EricKenjiLee/PhysMAP_Manuscript (no license), Haansololfp/NEMO_ICLR (MIT), Zenodo 21707907 (BSD-3-Clause)

Status: code verified, 253 files readable, 40 matches

Thursday, 20 August 2026 (2 papers)

[37] Code ↔ Paper doi:10.1016/j.neuroimage.2026.122171 [paper, repository]

A conserved node degree-based backbone and flexible hub organization of brain connectome during naturalistic movie watching.

Journal: NeuroImage

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 4 matches

[38] Code ↔ Paper doi:10.1038/s41467-026-74694-6 [paper, repository]

Semi-supervised Omics Factor Analysis (SOFA) disentangles known and latent sources of variation in multi-omic data.

Journal: Nature communications

Authors' code: Zenodo 14761127 (CC-BY-4.0), tcapraz/SOFA (MIT), Zenodo 19594991 (CC-BY-4.0)

Status: code verified, 17 files readable, 3 matches

Wednesday, 19 August 2026 (2 papers)

[39] Code ↔ Paper doi:10.1162/imag.a.1341 [paper, repository]

Massively parallelized brain tractography using compute clusters, supercomputers, and graphics processing units.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gitlab.inria.fr/cronos/software/tractography (no license), cronos-inria/Tractography.jl (MIT), karanaggarwal1994/life-opt (BSD-3-Clause), arcosuc3m/phardi (GPL-3.0), shashankgugnani/encode (no license), andachamamci/CATractography (GPL-3.0), robbert-harms/MDT (LGPL-3.0), SPMIC-UoN/cudimot (other), daducci/commit (other), jzxu0622/mati (BSD-2-Clause), framagit.org/cpoupon/gkg (other), CHrlS98/aodf-toolkit (MIT), codeocean:7377624 (no license)

Status: code verified, 2,879 files readable, 18 matches

[40] doi:10.3390/jcm15166418 [paper, data]

Beyond Accuracy: A Controlled Comparative Glaucoma Screening Benchmark Across Deep Learning and Hybrid Models Under Within- and Cross-Dataset Conditions.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

Tuesday, 18 August 2026 (1 paper)

[41] doi:10.3389/frai.2026.1812932 [paper, data]

Bridging global context and local precision using a disagreement-based region specific ensemble of Swin UNETR and SegResNet for 3D glioma segmentation.

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

Monday, 17 August 2026 (5 papers)

[42] Code ↔ Paper doi:10.1038/s41597-026-07809-9 [paper, repository]

EEG-based brain-computer interface (BCI) dataset for directional word recognition.

Journal: Scientific data

Authors' code: AvedikEkiz/inner-speech-bci (no license)

Status: code verified, 5 files readable, 1 match

[43] Code ↔ Paper doi:10.1093/braincomms/fcag317 [paper, repository]

Deep learning segmentation of paediatric brain tumours using diffusion-weighted MRI: towards an early, <i>in vivo</i> classification pipeline.

Journal: Brain communications

Authors' code: tmulvanyAC/DWI_DeepMedic (no license)

Status: code verified, 1 file readable

[44] doi:10.3390/e28080920 [paper]

XGBoost Classification of Epileptic EEG Using Nonlinear Dynamical Features and SHAP.

Journal: Entropy (Basel, Switzerland)

Status: code on request

[45] doi:10.3390/diagnostics16162609 [paper, data]

Automated Multimodal Sleep Staging Using DWT-Based Wavelet Decomposition and Explainable Machine Learning with Signal Sculpting Topographies.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[46] doi:10.3390/brainsci16080873 [paper, data]

Evaluating Validation Strategies in Motor Imagery EEG: A Full-Cohort GAF-PLV Analysis and Matched Sensitivity Study.

Journal: Brain sciences

Status: data only, 2 datasets cited

Saturday, 15 August 2026 (1 paper)

[47] Code ↔ Paper doi:10.1007/s12021-026-09810-4 [paper, repository]

Meta-Analysis of Face-Validity Indicators in Automatically Detected Dog Sleep Spindles.

Journal: Neuroinformatics

Authors' code: IvoWolf1987/spindle_hound (no license)

Status: code verified, 1 file readable, 1 match

Friday, 14 August 2026 (2 papers)

[48] Code ↔ Paper doi:10.3390/bioengineering13080924 [paper, repository]

Deep Learning-Based Temporal Gait Analysis Using a Smartphone IMU in Older Adults with and Without Non-Specific Low Back Pain.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: MS-AI-OVGU/gait_ml (other)

Status: code verified, 10 files readable, 4 matches

[49] doi:10.3389/fonc.2026.1806663 [paper, data]

A denoising autoencoder-enhanced ResNet 50 framework for explainable brain tumor classification using MRI.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

Thursday, 13 August 2026 (3 papers)

[50] Code ↔ Paper doi:10.1117/1.nph.13.s3.s32602 [paper, repository]

Cedalion tutorial: a Python-based framework for comprehensive analysis of multimodal fNIRS and DOT from the lab to the everyday world.

Journal: Neurophotonics

Authors' code: codeocean:5432660 (no license), cedalion.tools (no license)

Status: code found, not verified yet

[51] Code ↔ Paper doi:10.1016/j.ncrna.2026.06.004 [paper, repository]

LncPNdeep: A long non-coding RNA classifier based on large language model with peptide and nucleotide embedding.

Journal: Non-coding RNA research

Authors' code: yatoka233/LncPNdeep (no license)

Status: code verified, 21 files readable, 4 matches

[52] Code ↔ Paper doi:10.1016/j.isci.2026.117147 [paper, repository]

Penetrating potential evaluation of cyclotriphosphazenes target blood-brain barrier via computational toxicology methods.

Journal: iScience

Authors' code: Valdes-Tresanco-MS/gmx_MMPBSA (GPL-3.0)

Status: code verified, 124 files readable, 2 matches

Wednesday, 12 August 2026 (1 paper)

[53] Code ↔ Paper doi:10.1126/sciadv.aef9926 [paper, repository]

aDISCO: A clearing method to enable 3D microscopy of large archival paraffin-embedded human tissue blocks.

Journal: Science advances

Authors' code: ptrrupprecht/cell_detection (GPL-3.0), Zenodo 20443377 (GPL-3.0)

Status: code verified, 6 files readable, 3 matches

Monday, 10 August 2026 (2 papers)

[54] Code ↔ Paper doi:10.1038/s41597-026-07807-x [paper, repository]

A Multimodal fNIRS-EEG Dataset for Unilateral Limb Motor Imagery.

Journal: Scientific data

Authors' code: useflf/Multimodal-fNIRS-EEG-Dataset (no license)

Status: code verified, 9 files readable, 10 matches

[55] Code ↔ Paper doi:10.21037/qims-2026-0792 [paper, repository]

An nnU-Net-based framework with adaptive feature representation for 3D brain tumor segmentation.

Journal: Quantitative imaging in medicine and surgery

Authors' code: DIAGNijmegen/nnUNet_v2 (Apache-2.0)

Status: code verified, 199 files readable, 8 matches

Friday, 7 August 2026 (3 papers)

[56] Code ↔ Paper doi:10.1007/s12021-026-09807-z [paper, repository]

Optimal Size of Electrocorticography Grids for Classification of Hand Movements.

Journal: Neuroinformatics

Authors' code: UMCU-RIBS/Subgrid-Optimization (MIT)

Status: code verified, 9 files readable, 9 matches

[57] doi:10.1016/j.dib.2026.113148 [paper, data]

An ERP dataset for multi-information identity authentication.

Journal: Data in brief

Status: data only, 2 datasets cited

[58] doi:10.3390/s26165021 [paper]

Automatic Segmentation of Ischaemic Stroke Lesions Using Transformers and Convolutional Neural Networks Applied to Multimodal Neuroimaging.

Journal: Sensors (Basel, Switzerland)

Status: code on request

Thursday, 6 August 2026 (2 papers)

[59] Code ↔ Paper doi:10.1162/imag.a.1323 [paper, repository]

SUITPy: A Python-based toolbox for the analysis of cerebellar functional and anatomical imaging data across the human lifespan.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DiedrichsenLab/SUITPy (MIT)

Status: code verified, 26 files readable, 6 matches

[60] Code ↔ Paper doi:10.1093/bioadv/vbag198 [paper, repository]

SeizureBiomeDB: a unified database of gut microbiome alterations in pediatric and adult epilepsy.

Journal: Bioinformatics advances

Authors' code: AD-txigfwbexxk23/SeizureBiomeDB (no license)

Status: dead link

Wednesday, 5 August 2026 (7 papers)

[61] Code ↔ Paper doi:10.7554/elife.110170 [paper, repository]

Efficient and reproducible pipelines for spike sorting large-scale electrophysiology data.

Journal: eLife

Authors' code: AllenNeuralDynamics/aind-ephys-pipeline (MIT), AllenNeuralDynamics/aind-ephys-hybrid-benchmark (MIT), hub.docker.com/r/nextflow (no license), Zenodo 19481268 (CC-BY-4.0), AllenNeuralDynamics/aind-data-schema-models (MIT)

Status: code verified, 96 files readable, 4 matches

[62] Code ↔ Paper doi:10.1371/journal.pone.0354511 [paper, repository]

TokenUNet: A new case for transformers integration in efficient and interpretable 3D UNets for brain imaging segmentation.

Journal: PloS one

Authors' code: MedMaxLab/tokenunet (no license)

Status: code verified, 18 files readable, 7 matches

[63] Code ↔ Paper doi:10.1038/s41597-026-08034-0 [paper, repository]

A standardized naturalistic audio stimulus dataset with unsupervised labeling.

Journal: Scientific data

Authors' code: ajn3333/Sound-Standardization (MIT)

Status: code verified, 5 files readable, 3 matches

[64] doi:10.1038/s41598-026-63915-z [paper, data]

A novel hybrid transformer-based framework (H-ConvNeXt-Swin) to classify brain tumors using MRI.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[65] Code ↔ Paper doi:10.1038/s41597-026-07800-4 [paper, repository]

An fNIRS Dataset for Cognitive Decoding during a Multi-day Block-design Stroop Task.

Journal: Scientific data

Authors' code: figshare 31839673 (CC-BY-4.0)

Status: code verified

[66] Code ↔ Paper doi:10.1155/ijbi/9929121 [paper, repository]

Automated Semisupervised Measurement of Optic Nerve Sheath Diameter From CT Following Traumatic Brain Injury.

Journal: International journal of biomedical imaging

Authors' code: kaggle.com/competitions/rsna-intracranial-hemorrhage-detection (no license)

Status: dead link

[67] doi:10.3390/s26154963 [paper, data]

NeuroSPFNet: Vision-Language Semantic Prior-Guided Frequency-Enhanced Network for Brain Tumor Segmentation in Multimodal MRI.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Tuesday, 4 August 2026 (1 paper)

[68] Code ↔ Paper doi:10.1002/mrm.70496 [paper, repository]

A Deep Nonlinear Subspace Modeling and Reconstruction for Diffusion-Weighted Imaging Using Denoising Auto-Encoder.

Journal: Magnetic resonance in medicine

Authors' code: ZhengguoTan/sigpy (BSD-3-Clause), JuliusGlaser/LASER (no license)

Status: code verified, 144 files readable, 5 matches

Monday, 3 August 2026 (1 paper)

[69] Code ↔ Paper doi:10.3389/fnins.2026.1803569 [paper, repository]

A user-friendly graphical user interface for paw touch classification in rodent cylinder testing.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 15750960 (CC-BY-4.0), tyjo22/a-user-friendly-gui-for-paw-touch-classification-in-rodent-cylinder-testing (no license)

Status: code verified, 2 files readable

Saturday, 1 August 2026 (7 papers)

[70] Code ↔ Paper doi:10.1117/1.nph.13.s3.s32603 [paper, repository]

SNIRF2BIDS: a GUI-based tool for converting functional near-infrared spectroscopy data to the Brain Imaging Data Structure in R.

Journal: Neurophotonics

Authors' code: raphael-lorenzdelaigue/snirf2bids (no license)

Status: code verified, 8 files readable, 6 matches

[71] Code ↔ Paper doi:10.1093/bioinformatics/btag424 [paper, repository]

SlotDeconv: spatial transcriptomics deconvolution via diversity-constrained prototype learning and spatial refinement.

Journal: Bioinformatics (Oxford, England)

Authors' code: HannahNJIT/SlotDeconv (MIT)

Status: code verified, 8 files readable, 4 matches

[72] Code ↔ Paper doi:10.1093/bioinformatics/btag601 [paper, repository]

SIMLINK enables accurate variant pathogenicity prediction through modeling the gene-variant-feature association structure.

Journal: Bioinformatics (Oxford, England)

Authors' code: Chen-LuWang/SIMLINK (no license), Zenodo 21802211 (CC-BY-4.0)

Status: code verified, 16 files readable, 3 matches

[73] doi:10.1038/s41598-026-62977-3 [paper, data]

Hyperparameter-optimized deep learning for next-day pH forecasting in distributed water quality monitoring systems.

Journal: Scientific reports

Status: data only, 1 dataset cited

[74] Code ↔ Paper doi:10.1093/bioinformatics/btag578 [paper, repository]

NicheDeSig: niche-aware deconvolution and adaptive signature analysis for spatial transcriptomics.

Journal: Bioinformatics (Oxford, England)

Authors' code: Zenodo 20604815 (Apache-2.0), Davidcoach/NicheDeSig (no license), Zenodo 20685597 (Apache-2.0)

Status: code verified, 10 files readable, 1 match

[75] Code ↔ Paper doi:10.1093/bioinformatics/btag570 [paper, repository]

CASCADE: criticality avalanche spike cross-platform analysis detection engine, a multi-manufacturer MEA bash analysis pipeline.

Journal: Bioinformatics (Oxford, England)

Authors' code: Zenodo 20840795 (Apache-2.0)

Status: code verified, 27 files readable, 10 matches

[76] Code ↔ Paper doi:10.1093/bioinformatics/btag540 [paper, repository]

Deciphering spatial heterogeneity by multimodal spatial transcriptomics modelling with SpatialModal.

Journal: Bioinformatics (Oxford, England)

Authors' code: xingyili/SpatialModal (no license), Zenodo 21264356 (CC-BY-4.0)

Status: code verified, 20 files readable, 6 matches

Friday, 31 July 2026 (2 papers)

[77] doi:10.3389/fonc.2026.1834400 [paper, data]

BrainFusionNet: an attention-augmented deep convolutional framework with hybrid loss optimisation and test-time augmentation for multi-class brain tumour detection in magnetic resonance images.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[78] Code ↔ Paper doi:10.3389/fmed.2026.1875760 [paper, repository]

Adaptive multi-stage domain unlearning for white-matter lesion segmentation.

Journal: Frontiers in medicine

Authors' code: MIC-DKFZ/nnUNet (Apache-2.0), Pubec/nnunetv2-unlearning (Apache-2.0)

Status: code verified, 420 files readable, 3 matches

Thursday, 30 July 2026 (4 papers)

[79] doi:10.1038/s41597-026-07746-7 [paper, data]

A longitudinal resource for mapping interindividual variation in the aging connectome.

Journal: Scientific data

Status: data only, 1 dataset cited

[80] Code ↔ Paper doi:10.1038/s41597-026-07955-0 [paper, repository]

Human neuron activity during an 83-minute movie from 2,286 neurons and 29 patients.

Journal: Scientific data

Authors' code: mormannlab/SUMMER (no license), Zenodo 21165561 (CC-BY-4.0), mackelab/epiphyte (GPL-3.0)

Status: code verified, 196 files readable, 16 matches

[81] doi:10.1038/s41597-026-07787-y [paper, data]

A multi-paradigm and longitudinal EEG dataset including the "sixth-finger" and "affected-hand" motor imagery of stroke patients.

Journal: Scientific data

Status: data only, 1 dataset cited

[82] doi:10.3390/diagnostics16152407 [paper, data]

BG-YOLO11s: Boundary-Guided YOLO11 with Bézier Contour Augmentation for Brain Tumour Segmentation in T1-CE MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request, 1 dataset cited

Wednesday, 29 July 2026 (1 paper)

[83] doi:10.3390/diagnostics16152385 [paper, data]

POWDR: Pathology-Preserving Outpainting with Wavelet Diffusion for 3D MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Tuesday, 28 July 2026 (3 papers)

[84] doi:10.1002/mrm.70512 [paper]

Regularized Joint Reconstruction and Slab Combination for Accelerated Three-Dimensional Multi-Slab Diffusion-Weighted Imaging Using Multi-Scale Energy Models.

Journal: Magnetic resonance in medicine

Status: code on request

[85] Code ↔ Paper doi:10.1162/imag.a.1310 [paper, repository]

Experimental quality control induces changes in Allen mouse brain connectomes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: vik16nathan/allen_connectome_qc (no license)

Status: code verified, 40 files readable, 15 matches

[86] Code ↔ Paper doi:10.1016/j.mex.2026.104077 [paper, repository]

Structured multi-domain EEG descriptors with phase-based connectivity for lie and truth detection.

Journal: MethodsX

Authors' code: dutarisurya/lie-truth-eeg-descriptor (no license)

Status: code verified, 2 files readable, 6 matches

Friday, 24 July 2026 (3 papers)

[87] Code ↔ Paper doi:10.1038/s41598-026-52672-8 [paper, repository]

Validation of portable, semi-dry electrode-based electroencephalography device for its application in brain-computer interface solutions.

Journal: Scientific reports

Authors' code: MelindaRacz/VSN_validation_supplementary (no license)

Status: code verified, 12 files readable, 5 matches

[88] Code ↔ Paper doi:10.1162/imag.a.1301 [paper, repository]

MEG-GPT: A transformer-based foundation model for magnetoencephalography data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OHBA-analysis/osl-foundation (MIT), Zenodo 11099418 (CC-BY-4.0)

Status: code verified, 82 files readable, 13 matches

[89] doi:10.3389/fradi.2026.1847193 [paper, data]

Image-conditioned latent rectified flow models for 3D medical anomaly localisation.

Journal: Frontiers in radiology

Status: data only, 2 datasets cited

Thursday, 23 July 2026 (4 papers)

[90] Code ↔ Paper doi:10.1002/advs.76596 [paper, repository]

DDSurfer: A Weakly-Supervised Dual-Stream Deep Learning Framework for Cortical Surface Reconstruction From Diffusion MRI.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: ChengjinLii/DDSurfer (no license), pnlbwh/pnlpipe (other)

Status: code verified, 96 files readable, 13 matches

[91] Code ↔ Paper doi:10.1002/mrm.70439 [paper, repository]

Group-Patch Joint Compression: Compressing Dynamic B<sub>0</sub> and Static RF Spatial Modulations Across k-Space Subregion Groups for Highly Accelerated MRI.

Journal: Magnetic resonance in medicine

Authors' code: Zenodo 20533698 (BSD-3-Clause), ruitianwater/GroupPatchJCS_v1.0 (BSD-3-Clause), harmonizedmri.github.io/projects (no license)

Status: code verified, 216 files readable, 10 matches

[92] doi:10.1186/s40035-026-00566-0 [paper, data]

Application of the Allen Human Brain Atlas in Alzheimer's disease and Parkinson's disease.

Journal: Translational neurodegeneration

Status: data only, 2 datasets cited

[93] Code ↔ Paper doi:10.1038/s41467-026-75837-5 [paper, repository]

A hierarchical framework for cortical and subcortical gray-matter parcellation across rodents, primates, and humans.

Journal: Nature communications

Authors' code: Zenodo 17653308 (MIT), sivaven/omniconnectmodel (MIT)

Status: code verified, 38 files readable, 22 matches

Wednesday, 22 July 2026 (3 papers)

[94] Code ↔ Paper doi:10.1371/journal.pcbi.1013441 [paper, repository]

Large vision model framework for automated C. elegans analysis: From static morphometry to dynamic neural activity.

Journal: PLoS computational biology

Authors' code: lillyguisnet/TWARDISv0.1 (MIT), huggingface.co/lillyguisnet/celegans-classifier-vit-h-14-finetuned (no license)

Status: code verified, 19 files readable, 13 matches

[95] Code ↔ Paper doi:10.1002/mrm.70488 [paper, repository]

Advancing the Volumetric Analysis of Ultra-Low-Field Brain MRI Using Image-to-Image Translation.

Journal: Magnetic resonance in medicine

Authors' code: peterjhsu/CycleGAN-3D-ULF (MIT)

Status: code verified, 19 files readable, 5 matches

[96] Code ↔ Paper doi:10.3390/biomimetics11070516 [paper, repository]

Evolutionary, Neural, or LLM-Driven Heuristic Generation? A Unified Ant Colony Optimization Benchmark for Nature-Inspired Routing Heuristics on the TSP and CVRP.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: HaoyuanWu-A/NCO (no license)

Status: code verified, 27 files readable, 10 matches

Tuesday, 21 July 2026 (2 papers)

[97] Code ↔ Paper doi:10.1016/j.nicl.2026.104039 [paper, repository]

The quest for the best: manual, atlas- and spatial prior-based delineation of locus coeruleus.

Journal: NeuroImage. Clinical

Authors' code: dmiolga/LC_delineation (no license)

Status: dead link

[98] doi:10.3390/bios16070394 [paper, data]

Hybrid Edge-Cloud Asymmetric Analytics for Portable Multimodal BCI Biosensors.

Journal: Biosensors

Status: data only, 2 datasets cited

Monday, 20 July 2026 (3 papers)

[99] Code ↔ Paper doi:10.1038/s41592-026-03159-x [paper, repository]

Siibra: a software tool suite for realizing a Multilevel Human Brain Atlas from complex data resources.

Journal: Nature methods

Authors' code: siibra-python.readthedocs.io (no license), HumanBrainProject/hbp-spatial-backend (Apache-2.0), FZJ-INM1-BDA/siibra-tutorials (Apache-2.0), FZJ-INM1-BDA/siibra-python (Apache-2.0), FZJ-INM1-BDA/siibra-explorer (Apache-2.0), FZJ-INM1-BDA/siibra-api (Apache-2.0), apache.org/licenses (no license), Zenodo 21127648 (CC-BY-4.0)

Status: code verified, 1,317 files readable, 25 matches

[100] Code ↔ Paper doi:10.1162/netn.a.569 [paper, repository]

NeuroMArVL: An interactive and collaborative web-based tool for visualizing brain networks.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: sidchop/brainconn (other), immersive.erc.monash.edu/neuromarvl (no license), NSBLab/neuromarvl (GPL-3.0), netneurolab/netneurotools (BSD-3-Clause)

Status: code verified, 565 files readable, 4 matches

[101] Code ↔ Paper doi:10.3389/fnins.2026.1874302 [paper, repository]

Architecture-data matching for EEG-EMG decoding: compact deep models match classical spectral decoders on the WAY-EEG-GAL grasp-and-lift dataset.

Journal: Frontiers in neuroscience

Authors' code: osmar235/eeg-emg-architecture-data-matching (MIT), Zenodo 19966634 (MIT)

Status: code verified, 32 files readable, 29 matches

Saturday, 18 July 2026 (2 papers)

[102] Code ↔ Paper doi:10.1007/s12021-026-09803-3 [paper, repository]

NeuroFusion: A Unified Framework for Generalized Visual Stimulus Decoding from fMRI Across Datasets and Subjects.

Journal: Neuroinformatics

Authors' code: r8832711/Cross-subject-and-cross-dataset-brain-decoding (no license)

Status: code verified, 10 files readable, 8 matches

[103] Code ↔ Paper doi:10.1007/s00429-026-03163-z [paper, repository]

Toward reliable thalamic segmentation: an evaluation of automated methods for structural MRI.

Journal: Brain structure & function

Authors' code: Zenodo 13918589 (CC-BY-NC-SA-4.0), arnaudletroter/7TAMIBrain (MIT)

Status: code verified, 3 files readable

Friday, 17 July 2026 (4 papers)

[104] doi:10.1371/journal.pone.0353399 [paper, data]

Data driven multiscale modelling of paroxysmal brain transitions using DC-coupled electrophysiological data.

Journal: PloS one

Status: data only, 1 dataset cited

[105] Code ↔ Paper doi:10.1371/journal.pone.0353930 [paper, repository]

MMFNet: A multi-branch multi-scale framework with adaptive sparse self-attention and cross-modal fusion for sleep stage assessment.

Journal: PloS one

Authors' code: OSF tmjbk (no license)

Status: code verified, 3 files readable

[106] Code ↔ Paper doi:10.1371/journal.pcbi.1014489 [paper, repository]

PumpKin: A machine-learning pipeline for automatically tracking localized kinematics in freely moving C. elegans.

Journal: PLoS computational biology

Authors' code: lu-lab/PumpKin (MIT)

Status: code verified, 16 files readable, 7 matches

[107] doi:10.3389/fnbot.2026.1899676 [paper, data]

BFMGHC: a boosted fuzzy manifold granule hypersurface classifier with local topology preservation.

Journal: Frontiers in neurorobotics

Status: data only, 2 datasets cited

Thursday, 16 July 2026 (3 papers)

[108] doi:10.1186/s40708-026-00321-1 [paper, data]

EEG-DBNet: a dual-branch framework for temporal-spectral representation learning of motor imagery electroencephalography.

Journal: Brain informatics

Status: data only, 1 dataset cited

[109] Code ↔ Paper doi:10.1002/mrm.70507 [paper, repository]

Comparative Systematic Analysis of Gray Matter Biophysical Models on a Public Dataset.

Journal: Magnetic resonance in medicine

Authors' code: QuentinUhl/graymatter_swissknife (Apache-2.0)

Status: code verified, 71 files readable

[110] Code ↔ Paper doi:10.3390/bioengineering13070820 [paper, repository]

Benchmarking Multimodal Workload Classification: Effects of Modality, Validation Protocol, and Segmentation Contrast on an Open Graded-Arithmetic Dataset.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: LMBooth/Arithmetic_Workload_Estimation (CC0-1.0), Zenodo 20162864 (CC0-1.0)

Status: code verified, 40 files readable, 21 matches

Wednesday, 15 July 2026 (1 paper)

[111] doi:10.1371/journal.pone.0351667 [paper, data]

MamNet-PT: A Mamba-enhanced hybrid architecture with selective state-space modeling for uncertainty-aware brain tumor segmentation.

Journal: PloS one

Status: data only, 1 dataset cited

Tuesday, 14 July 2026 (3 papers)

[112] Code ↔ Paper doi:10.7554/elife.108663 [paper, repository]

The Crunchometer, a low-cost, open-source acoustic analysis of feeding microstructure.

Journal: eLife

Authors' code: OSF bmkdc (no license), RanierLabNeurobiologyAppetite2026/TheCrunchometerPy (MIT), Zenodo 8422691 (other-open), Zenodo 8423311 (other-open), perezortegaj/moussionenergy (GPL-3.0), perezortegaj/xsembles2p (GPL-3.0)

Status: code verified, 298 files readable, 18 matches

[113] doi:10.3390/diagnostics16142189 [paper, data]

Transfer Learning and Optimized Machine Learning Techniques for Multiclass Diabetic Retinopathy Classification Using Retinal Images.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[114] doi:10.3390/jcm15145508 [paper, data]

Region-Wise Bézier Intensity Augmentation for Domain-Generalized Brain Tumor Segmentation with a Mamba U-Net.

Journal: Journal of clinical medicine

Status: code on request, 1 dataset cited

Monday, 13 July 2026 (2 papers)

[115] Code ↔ Paper doi:10.1162/imag.a.1299 [paper, repository]

A modular semantic-structural pipeline for visual decoding from primate spiking data via selective temporal integration.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gin.g-node.org/paolo_papale/tvsd (CC-BY-4.0), fidelioc55/primates-mua-decode (no license)

Status: code verified, 192 files readable, 4 matches

[116] Code ↔ Paper doi:10.1038/s44220-026-00680-y [paper, repository]

The neuroimaging correlates of depression established across six large-scale population datasets.

Journal: Nature. Mental health

Authors' code: kassiehamilton/WAPIAW2024 (MIT)

Status: code verified, 10 files readable, 6 matches

Saturday, 11 July 2026 (1 paper)

[117] doi:10.3390/s26144406 [paper]

Demodulation-Oriented Neural Denoising for Long-Sequence I/Q Wireless Signals in Data-Link Receiver Chains.

Journal: Sensors (Basel, Switzerland)

Status: code on request

Friday, 10 July 2026 (4 papers)

[118] Code ↔ Paper doi:10.1523/eneuro.0460-25.2026 [paper, repository]

StereoPylot: An Open-Source Raspberry Pi-Based Stereotaxic Apparatus Controller with 3D Printed Components for Fully Motorized Control, Digital Display, and Customizable Features.

Journal: eNeuro

Authors' code: botterillneurolab/StereoPylot (GPL-3.0)

Status: code verified, 22 files readable, 2 matches

[119] doi:10.1038/s41598-026-55178-5 [paper, data]

Novel approach to early prediction of alzheimer's disease progression using integrated deep regulatory genetic neural network and optimized deep belief networks.

Journal: Scientific reports

Status: data only, 1 dataset cited

[120] Code ↔ Paper doi:10.1162/imag.a.1290 [paper, repository]

Calibration of MRI-based reference intervals to new samples.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: andy1764/ReForm (no license)

Status: code verified, 3 files readable, 1 match

[121] Code ↔ Paper doi:10.1016/j.dib.2026.113064 [paper, repository]

A reproducible EEG hyperscanning dataset for triadic social decision-making during an iterated 3-player Prisoner's Dilemma.

Journal: Data in brief

Authors' code: heegyukim4043/PD_EEG_hyperscan_processing (no license)

Status: code verified, 7 files readable, 6 matches

Thursday, 9 July 2026 (2 papers)

[122] doi:10.1371/journal.pone.0349598 [paper, data]

On the stability of morphology and performance of neural interfacing electrodes fabricated via CO2-snow-assisted hierarchical surface restructuring.

Journal: PloS one

Status: data only, 1 dataset cited

[123] Code ↔ Paper doi:10.1038/s41597-026-07676-4 [paper, repository]

A neuroimaging dataset combining movie-watching, eye-tracking, sensorimotor mapping, and cognitive tasks.

Journal: Scientific data

Authors' code: Zenodo 19471544 (BSD-3-Clause), levchenkoegor/movieproject2 (BSD-3-Clause)

Status: code verified, 118 files readable, 20 matches

Wednesday, 8 July 2026 (2 papers)

[124] Code ↔ Paper doi:10.1523/jneurosci.1594-25.2026 [paper, repository]

KIASORT: Knowledge-Integrated Automated Spike Sorting for Geometry-Free Neuron Tracking.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: kiasort.com (no license)

Status: code verified

[125] doi:10.1007/s12021-026-09797-y [paper, data]

Event Files are Common, But Semantic Event Metadata Remain Uneven in OpenNeuro BIDS Datasets.

Journal: Neuroinformatics

Status: data only, 3 datasets cited

Tuesday, 7 July 2026 (2 papers)

[126] Code ↔ Paper doi:10.1016/j.isci.2026.116647 [paper, repository]

Enhancing mobile brain and body imaging: Open-source solutions for real-world research applications.

Journal: iScience

Authors' code: ai.google.dev/edge/mediapipe (no license), NeuropsyOL/RECORDA (GPL-3.0), NeuropsyOL/SENDA (GPL-3.0), NeuropsyOL/VIEWA (GPL-3.0)

Status: code verified, 795 files readable

[127] doi:10.3390/jemr19040074 [paper, data]

Eye-Movement-Assisted Time-Frequency EEG Decoding for Multimodal Robotic Arm Control.

Journal: Journal of eye movement research

Status: data only, 1 dataset cited

Monday, 6 July 2026 (5 papers)

[128] Code ↔ Paper doi:10.3758/s13428-026-02997-z [paper, repository]

PyLossless: A non-destructive EEG processing pipeline.

Journal: Behavior research methods

Authors' code: lina-usc/pylossless (MIT)

Status: code verified, 45 files readable, 18 matches

[129] doi:10.1186/s13073-026-01702-1 [paper, data]

Tandem repeat polymorphisms are associated with brain structure: results of two large population-based studies.

Journal: Genome medicine

Status: data only, 2 datasets cited

[130] Code ↔ Paper doi:10.1016/j.isci.2026.116671 [paper, repository]

A high-resolution functional network-organized atlas of human superficial white matter from ultra-high-field diffusion MRI.

Journal: iScience

Authors' code: mushroomer1823/swm_atlas (no license), mushroomer1823/connectomic_cluster (no license)

Status: code verified, 54 files readable, 5 matches

[131] Code ↔ Paper doi:10.1039/d6ra03343a [paper, repository]

A benchmark dataset and interpretable deep learning framework for drug-induced developmental neurotoxicity prediction.

Journal: RSC advances

Authors' code: lixiao1688/DNT_Benchmark_Dataset_Model (no license)

Status: code verified, 9 files readable, 13 matches

[132] Code ↔ Paper doi:10.3389/fnimg.2026.1873040 [paper, repository]

A rapid streamline-based extension of Tractfinder for white matter tract segmentation.

Journal: Frontiers in neuroimaging

Authors' code: tractfinder/tractfinder (no license), fionaEyoung/tractfinder (no license)

Status: code verified, 14 files readable

Friday, 3 July 2026 (2 papers)

[133] Code ↔ Paper doi:10.1111/joa.70203 [paper, repository]

Two-step workflow integrating automatic registration and manual refinement for the accurate alignment of serial histological sections in 3D reconstruction.

Journal: Journal of anatomy

Authors' code: SatoruMuro/AlignRef (Apache-2.0), SatoruMuro/SAM2GUIfor3Drecon (Apache-2.0)

Status: code verified, 135 files readable, 1 match

[134] Code ↔ Paper doi:10.1126/sciadv.aee5076 [paper, repository]

A 3D amphioxus brain atlas illuminates the blueprint of the ancestral chordate brain and highlights unique vertebrate innovations.

Journal: Science advances

Authors' code: LCY-ICOB/amphiBrain (no license), Zenodo 19658940 (CC-BY-4.0)

Status: code verified, 1 file readable

Thursday, 2 July 2026 (2 papers)

[135] doi:10.1371/journal.pone.0344291 [paper, data]

Deep learning based two-way feature depiction model for brain tumor detection.

Journal: PloS one

Status: data only, 1 dataset cited

[136] doi:10.1016/j.dib.2026.113056 [paper, data]

A single-echo/multi-echo BOLD fMRI test-retest dataset.

Journal: Data in brief

Status: data only, 3 datasets cited

Wednesday, 1 July 2026 (10 papers)

[137] Code ↔ Paper doi:10.1093/nar/gkag454 [paper, repository]

RegRegSEA: a web server for regulatory region set enrichment analysis of epigenomic data.

Journal: Nucleic acids research

Authors' code: CCB-SB/RegRegSEA (MIT), Zenodo 19731482 (MIT)

Status: code verified, 10 files readable, 2 matches

[138] doi:10.1038/s41598-026-59979-6 [paper, data]

From muscles to motion: the role of sensor layout and physiological factors in hand motion decoding.

Journal: Scientific reports

Status: data only, 1 dataset cited

[139] doi:10.1002/hbm.70561 [paper]

Benchmarking fMRI Denoising Pipelines.

Journal: Human brain mapping

Status: code on request

[140] Code ↔ Paper doi:10.1002/hbm.70588 [paper, repository]

Talking to the Brain: Using Large Language Models as Proxies to Model Brain Semantic Features.

Journal: Human brain mapping

Authors' code: pyecharts/pyecharts (MIT)

Status: code verified, 137 files readable

[141] Code ↔ Paper doi:10.1093/bioinformatics/btag220 [paper, repository]

Riemannian metric learning for alignment of spatial multiomics.

Journal: Bioinformatics (Oxford, England)

Authors' code: raphael-group/MGW (no license), Zenodo 20074368 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[142] doi:10.1002/hbm.70590 [paper]

Diurnal Variations and Test-Retest Reliability of Resting-State Functional MRI Metrics.

Journal: Human brain mapping

Status: code on request

[143] Code ↔ Paper doi:10.1002/hbm.70599 [paper, repository]

Group Joint ICA (gjICA): A Method for Multimodal Fusion of Concurrent EEG and fMRI Data.

Journal: Human brain mapping

Authors' code: trendscenter/gift (no license)

Status: code verified, 1,045 files readable, 2 matches

[144] doi:10.1177/00368504261472740 [paper]

DTLI: Distribution transformation-based lightweight learned indexing for data lakehouse query optimization.

Journal: Science progress

Status: code on request

[145] Code ↔ Paper doi:10.1093/cercor/bhag113 [paper, repository]

Long-term reliability and stability of parameterized resting state EEG: evidence from a five-year follow-up.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: MindSpaceLab/Aperiodic_Test_Retest_5year (MIT)

Status: code verified, 8 files readable, 4 matches

[146] Code ↔ Paper doi:10.1002/dad2.70430 [paper, repository]

Benchmarking privacy and utility in synthetic tabular cohorts for Alzheimer's disease research.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: fwinzell/synthetic_ad (MIT)

Status: code verified, 32 files readable, 7 matches

Tuesday, 30 June 2026 (1 paper)

[147] doi:10.1364/boe.604286 [paper]

Computational validation of optical adaptive depth steering for continuous-wave fNIRS.

Journal: Biomedical optics express

Status: code on request

Monday, 29 June 2026 (3 papers)

[148] Code ↔ Paper doi:10.3758/s13428-026-03096-9 [paper, repository]

Low-cost, open-source, full-stack software and Arduino-based hardware for control of commercially available animal behavior systems.

Journal: Behavior research methods

Authors' code: yadavlabs/open-source-rat-behavior (BSD-3-Clause)

Status: code verified, 35 files readable, 15 matches

[149] doi:10.3390/jimaging12070288 [paper, data]

GDNet: A Robust 2.5D Multimodal MRI Brain Tumor Segmentation Framework with EMA Stabilization and Tumor-Aware Sampling.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[150] Code ↔ Paper doi:10.3390/biomedicines14071475 [paper, repository]

ETDACVO: Structural-Fidelity-Aware Evolutionary Co-Optimization for Robust and Explainable Brain Tumor MRI Classification.

Journal: Biomedicines

Authors' code: IndrakumarK/Evolutionary-Co-Optimization-of-Data-Augmentation-and-Learning-Dynamics-for-BT-MRI-Classification (other)

Status: code verified, 47 files readable, 18 matches

Saturday, 27 June 2026 (1 paper)

[151] doi:10.3390/s26134091 [paper, data]

Hypnogram-Driven Automatic Sleep Staging and a Quality-Index Assessment Through a Two-Stage LSTM-DNN Ensemble Learning Approach Using Multi-Biosignal Features for Sleep Disorder Detection.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Thursday, 25 June 2026 (2 papers)

[152] doi:10.1016/j.jneumeth.2026.110839 [paper, data]

Methods for measuring neural activity during voluntary wheel running.

Journal: Journal of neuroscience methods

Status: data only, 1 dataset cited

[153] doi:10.3390/s26134045 [paper, data]

Brain Signal for Secure EEG Biometric Authentication: A Comprehensive Survey.

Journal: Sensors (Basel, Switzerland)

Status: data only, 8 datasets cited

Wednesday, 24 June 2026 (4 papers)

[154] doi:10.1038/s41467-026-74635-3 [paper, data]

Flexible artificial compound eye cameras for ultrawide continuous tracking in mixed reality.

Journal: Nature communications

Status: code on request, 1 dataset cited

[155] Code ↔ Paper doi:10.1186/s13059-026-04125-8 [paper, repository]

MLMarker: a machine learning framework for tissue inference and biomarker discovery.

Journal: Genome biology

Authors' code: TineClaeys/MLMarker-manuscript (no license), TineClaeys/MLMarker (Apache-2.0), TineClaeys/MLMarker-streamlit (Apache-2.0)

Status: code verified, 54 files readable, 34 matches

[156] Code ↔ Paper doi:10.3390/s26134004 [paper, repository]

Automated Anxiety Detection System Integrating a Brain-Computer Interface for Neurofeedback Applications.

Journal: Sensors (Basel, Switzerland)

Authors' code: colab.research.google.com/drive/1ackfhtosbynpzmgzfyyjydxcereygdrt (no license), colab.research.google.com/drive/1bwge17lzzzbqpqy--yjyly8gknistdup (no license), colab.research.google.com/drive/18uq_00ynr0mot1d6nharwoxo9rwavtny (no license)

Status: code verified

[157] Code ↔ Paper doi:10.3390/jimaging12070276 [paper, repository]

Hyperelastic Regularization for Near-Diffeomorphic Transformer-Based Brain MRI Registration.

Journal: Journal of imaging

Authors' code: Zzxmh/HypEReg-TransMorph (MIT), Zenodo 19888526 (MIT), Zenodo 20113717 (MIT)

Status: code verified, 287 files readable, 20 matches

Tuesday, 23 June 2026 (3 papers)

[158] Code ↔ Paper doi:10.1016/j.neuroimage.2026.122074 [paper, repository]

MindGrab: A spectrally-motivated architecture for accessible deep learning in neuroimaging.

Journal: NeuroImage

Authors' code: neurolabusc/broccolini (LGPL-2.1)

Status: code verified, 288 files readable

[159] Code ↔ Paper doi:10.1371/journal.pone.0352191 [paper, repository]

Bayesian Uncertainty-aware Deep Learning with noisy labels: Tackling annotation ambiguity in EEG seizure detection.

Journal: PloS one

Authors' code: deeksha-ms/BUNDL (no license)

Status: code verified, 144 files readable, 5 matches

[160] Code ↔ Paper doi:10.3389/fcogn.2026.1839153 [paper, repository]

A standardized non-linear approach to studying menstrual cycle effects on brain and behavior.

Journal: Frontiers in cognition

Authors' code: macklab/cyclepoint (no license)

Status: code verified, 3 files readable, 1 match

Monday, 22 June 2026 (2 papers)

[161] Code ↔ Paper doi:10.1371/journal.pone.0351953 [paper, repository]

GL-Net: A knowledge-guided Gaussian-gated and layered refinement network for 3D MRI segmentation of brain gliomas.

Journal: PloS one

Authors' code: Turing17/GL-Net (no license)

Status: empty repository, 1 file readable

[162] Code ↔ Paper doi:10.1016/j.isci.2026.116408 [paper, repository]

Epilepsy-IEDs: An automated machine learning model for detecting interictal epileptiform discharges from scalp electroencephalograms.

Journal: iScience

Authors' code: ylooliu/Epilepsy-IEDs (no license), Zenodo 20404907 (CC-BY-4.0), trekhleb/machine-learning-octave (MIT), ajaiantilal/randomforest-matlab (no license)

Status: code verified, 87 files readable, 2 matches

Saturday, 20 June 2026 (1 paper)

[163] Code ↔ Paper doi:10.1038/s41598-026-57519-w [paper, repository]

Automated segmentation of neurons and spinal cord structures in immunofluorescence images using SpineDL.

Journal: Scientific reports

Authors' code: biapy.readthedocs.io (no license), biapyx/biapy (MIT)

Status: code verified, 153 files readable, 6 matches

Friday, 19 June 2026 (1 paper)

[164] Code ↔ Paper doi:10.1038/s41598-026-58377-2 [paper, repository]

A novel distortion-matched anatomical imaging sequence for high-fidelity functional mapping in submillimeter-resolution fMRI.

Journal: Scientific reports

Authors' code: SeongDaeYun/NovelMP2EPI (no license)

Status: code verified, 4 files readable

Wednesday, 17 June 2026 (3 papers)

[165] doi:10.1038/s41598-026-56169-2 [paper, data]

An optimization-driven hierarchical deep learning approach using the Gray Langurs algorithm for data-driven seismic activity prediction.

Journal: Scientific reports

Status: data only, 1 dataset cited

[166] Code ↔ Paper doi:10.3758/s13428-026-03060-7 [paper, repository]

Synchronizing brains and hearts: A practical guide for caregiver-child fNIRS-ECG multimodal hyperscanning.

Journal: Behavior research methods

Authors' code: support.mindwaretech.com/knowledge-base/kb0092 (no license), support.mindwaretech.com/knowledge-base/kb0093 (no license)

Status: code verified

[167] Code ↔ Paper doi:10.1364/boe.600665 [paper, repository]

NeuroSeg-MF: robust neuron segmentation in two-photon Ca<sup>2+</sup> imaging using multi-feature fusion and detection-guided SAM.

Journal: Biomedical optics express

Authors' code: XZH-James/NeuroSeg-MF (no license)

Status: code verified, 101 files readable, 11 matches

Monday, 15 June 2026 (5 papers)

[168] Code ↔ Paper doi:10.1371/journal.pone.0351431 [paper, repository]

Revisiting the role of structural connectivity-based parcellation in thalamic nuclei segmentation: Benchmarking against recent state-of-the-art methods.

Journal: PloS one

Authors' code: Zenodo 20473971 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[169] Code ↔ Paper doi:10.1162/imag.a.1272 [paper, repository]

Building bridges between brain and behavior: An open-source toolbox for joint modeling with fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ampl-psych/EMC2 (GPL-3.0), OSF jxhcp (no license)

Status: code verified, 132 files readable, 15 matches

[170] Code ↔ Paper doi:10.1162/imag.a.1274 [paper, repository]

QuNex recipes: Executable, human-readable workflows for reproducible neuroimaging research.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ULJ-Yale/qunex_run_recipe (MIT)

Status: code verified, 4 files readable, 2 matches

[171] doi:10.3390/s26123804 [paper, data]

A Centralized AI Lakehouse Framework for Brain Tumor MRI Classification and Segmentation, University KPI Forecasting, and Water Potability Prediction.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[172] Code ↔ Paper doi:10.1080/10618600.2026.2639081 [paper, repository]

Probabilistic Joint and Individual Variation Explained (ProJIVE) for Data Integration.

Journal: Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America

Authors' code: thebrisklab/ProJIVE (other)

Status: code verified, 197 files readable, 5 matches

Sunday, 14 June 2026 (1 paper)

[173] Code ↔ Paper doi:10.1038/s41598-026-57913-4 [paper, repository]

Explainable ensemble learning using SHAP for ERP anomaly detection.

Journal: Scientific reports

Authors' code: Zenodo 20609426 (CC-BY-4.0)

Status: code verified

Saturday, 13 June 2026 (1 paper)

[174] doi:10.1038/s41598-026-56416-6 [paper]

EEG blink and gaze control using random forest classification for accessible assistive robotic navigation in real world conditions.

Journal: Scientific reports

Status: code on request

Friday, 12 June 2026 (2 papers)

[175] Code ↔ Paper doi:10.1371/journal.pone.0351405 [paper, repository]

Unimodal vs. multimodal deep learning for non-invasive MGMT promoter methylation prediction in glioblastoma: A systematic evaluation on the BraTS 2021 dataset.

Journal: PloS one

Authors' code: kaggle.com/competitions/rsna-miccai-brain-tumor-radiogenomic-classification (no license), freddy-oulia/MGMT_Promoter_Methylation_Prediction (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[176] Code ↔ Paper doi:10.1038/s41598-026-55397-w [paper, repository]

Fast surface reconstruction of human brain MRI: benchmarking deep-learning based morphometry tools.

Journal: Scientific reports

Authors' code: SCAN-NRAD/DL-DiReCT-V2 (BSD-3-Clause)

Status: code verified, 27 files readable, 1 match

Thursday, 11 June 2026 (1 paper)

[177] Code ↔ Paper doi:10.3389/frai.2026.1807248 [paper, repository]

Federated learning framework for medical image analysis with perspective-aware contrastive and mixture of experts.

Journal: Frontiers in artificial intelligence

Authors' code: Shradha1023/FedPAC-ME (MIT), Zenodo 17883548 (MIT)

Status: code verified, 52 files readable, 20 matches

Wednesday, 10 June 2026 (5 papers)

[178] Code ↔ Paper doi:10.21203/rs.3.rs-9676637/v1 [paper, repository]

A Comprehensive Benchmarking of Spatial Deconvolution and Domain Detection Methods across Diverse Tissues and Spatial Transcriptomic Technologies

Journal: Research Square (preprint)

Authors' code: Zafar-Lab/spDDB (MIT)

Status: code verified, 114 files readable, 20 matches

[179] Code ↔ Paper doi:10.1038/s41597-026-07492-w [paper, repository]

A Dataset of Microelectrode Recordings from Deep Brain Stimulation Procedures.

Journal: Scientific data

Authors' code: kasiaOsowska/Deep-Brain-Stimulation-Microelectrode-Recordings (no license)

Status: code verified, 22 files readable, 8 matches

[180] doi:10.1155/ijbi/5318118 [paper, data]

Brain Tumor Segmentation Using U-Net With ResNet50 Encoder for Enhanced MRI Analysis.

Journal: International journal of biomedical imaging

Status: data only, 2 datasets cited

[181] Code ↔ Paper doi:10.1016/j.ynirp.2026.100360 [paper, repository]

CIVET-Chimp: An automated pipeline for MRI-based cortical surface extraction in chimpanzees.

Journal: Neuroimage. Reports

Authors' code: visionandcognition/nhp-freesurfer (MIT), neurabenn/precon_all (MIT), CoBrALab/iterativeN4_multispectral (other)

Status: code verified, 41 files readable, 1 match

[182] Code ↔ Paper doi:10.3389/fncir.2026.1814667 [paper, repository]

A modular and flexible pipeline for intraoperative electrode reconstruction and localization in patients with brain lesions.

Journal: Frontiers in neural circuits

Authors' code: Center-For-Neurotechnology/BrainInterface3D (MIT), PerkLab/SlicerFreeSurfer (BSD-3-Clause), isl-org/MiDaS (MIT), cnr-isti-vclab/PyMeshLab (GPL-3.0)

Status: code verified, 202 files readable, 3 matches

Tuesday, 9 June 2026 (4 papers)

[183] Code ↔ Paper doi:10.1016/j.isci.2026.116168 [paper, repository]

See the small lesions: Frequency-guided spatial debiasing GAN for multimodal medical image fusion.

Journal: iScience

Authors' code: wjq-111/FGSD_GAN (no license), hanna-xu/MURF (no license), Zhaozixiang1228/MMIF-EMMA (no license), tthinking/DATFuse (no license)

Status: code verified, 104 files readable, 2 matches

[184] Code ↔ Paper doi:10.3389/frai.2026.1785867 [paper, repository]

A generalized logistic-logit function and its application to multi-layer perceptron and neuron segmentation.

Journal: Frontiers in artificial intelligence

Authors' code: biomedical-cybernetics/CMG-GLLF (no license)

Status: code verified, 240 files readable, 17 matches

[185] doi:10.3389/fmed.2026.1849122 [paper, data]

An intelligent gradient-guided hybrid inpainting framework for brain MRI reconstruction and Alzheimer's disease classification in connected healthcare systems.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[186] doi:10.3390/jimaging12060255 [paper]

A Multimodal Dense Parallel Global Attention Mechanism for Brain Tumor Image Segmentation.

Journal: Journal of imaging

Status: code on request

Monday, 8 June 2026 (5 papers)

[187] Code ↔ Paper doi:10.1016/j.crmeth.2026.101480 [paper, repository]

DeepFaceMouse enables scalable prediction of large-scale brain activity from facial dynamics in mice.

Journal: Cell reports methods

Authors' code: Zenodo 19644866 (CC-BY-4.0), yyildirimlab/DeepFaceMouse (MIT)

Status: code verified, 7 files readable, 5 matches

[188] doi:10.1038/s41597-026-07540-5 [paper, data]

A multimodal epilepsy dataset of paired 3-Tesla and 7-Tesla MRI and intracranial EEG.

Journal: Scientific data

Status: data only, 1 dataset cited

[189] Code ↔ Paper doi:10.1038/s41598-026-55225-1 [paper, repository]

Benchmarking criteria to determine latent linear dimensionality in neural data.

Journal: Scientific reports

Authors' code: francescovaccari/Dimensionality-estimation (MIT), francescovaccari/Dimensionality-estimation-upper-bound (MIT)

Status: code verified, 23 files readable, 19 matches

[190] Code ↔ Paper doi:10.1038/s42255-026-01539-3 [paper, repository]

A cross-species atlas of the dorsal vagal complex reveals neural mediators of the effects of cagrilintide on energy balance.

Journal: Nature metabolism

Authors' code: perslab/ludwig-coester-Gordian-2025 (no license)

Status: code verified, 17 files readable, 15 matches

[191] Code ↔ Paper doi:10.1113/jp290979 [paper, repository]

A method of compensating for the excitability of spinal motoneurones when estimating the magnitude of potentials evoked in skeletal muscles.

Journal: The Journal of physiology

Authors' code: Zenodo 20037178 (CC-BY-4.0)

Status: code verified, 4 files readable, 11 matches

Saturday, 6 June 2026 (2 papers)

[192] Code ↔ Paper doi:10.1038/s41597-026-07423-9 [paper, repository]

Unraveling the Complexity of Multilingual Comprehension: Neuroimaging and Linguistic Profiling in 700+ Adults.

Journal: Scientific data

Authors' code: OSF b6ur5 (no license)

Status: code verified, 39 files readable, 7 matches

[193] doi:10.1016/j.dib.2026.112940 [paper, data]

BIDS-formatted resting-state and loudness dependence of auditory evoked potentials (LDAEP) EEG dataset from healthy women.

Journal: Data in brief

Status: data only, 1 dataset cited

Friday, 5 June 2026 (2 papers)

[194] doi:10.3390/diagnostics16111745 [paper, data]

Brain Tumor Classification and Segmentation in MR Images Using EfficientNet and U-Net++ Models.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

[195] Code ↔ Paper doi:10.21769/bioprotoc.5708 [paper, repository]

Measuring Electrophysiological Activity in Acute Brain Slices, Spheroids, and Organoids Using 3D High-Density Multielectrode Arrays.

Journal: Bio-protocol

Authors' code: Zenodo 13908319 (no license)

Status: code verified, 1 file readable

Thursday, 4 June 2026 (3 papers)

[196] Code ↔ Paper doi:10.1038/s41467-026-73932-1 [paper, repository]

Towards real-time additive-free dopamine detection at 10<sup>-8</sup> mM with hardware accelerated platform integrated on camera.

Journal: Nature communications

Authors' code: QizhouW/Hardware-accelerated-Dopamine-Sensing (no license), Zenodo 19430063 (CC-BY-4.0)

Status: code verified, 11 files readable, 3 matches

[197] Code ↔ Paper doi:10.1038/s41598-026-49379-1 [paper, repository]

Rule-guided Skip-GCN in neural latent information diffusion network for social recommendation.

Journal: Scientific reports

Authors' code: CAorvi/DiffRSG (no license)

Status: code verified, 9 files readable

[198] Code ↔ Paper doi:10.1038/s41598-026-53829-1 [paper, repository]

Attention U-Net with differential privacy in federated learning framework for brain stroke lesion segmentation.

Journal: Scientific reports

Authors' code: adhisivasys1984/fl-attentionunet-dp (no license)

Status: dead link

Wednesday, 3 June 2026 (4 papers)

[199] Code ↔ Paper doi:10.1177/13872877261453512 [paper, repository]

Fluorescence spectroscopy and machine learning methods for detection of Alzheimer's disease from circulating white blood cells.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: Zenodo 18217440 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[200] Code ↔ Paper doi:10.1523/eneuro.0432-25.2026 [paper, repository]

Seize the Data: A User-Friendly GUI for High-Resolution Analysis of Seizure Dynamics in HD-MEA Recordings.

Journal: eNeuro

Authors' code: shorturl.at/vlegn (no license)

Status: code verified

[201] doi:10.1038/s41598-026-54535-8 [paper, data]

Adaptive confidence ensemble reranking for reliable knowledge-intensive question answering.

Journal: Scientific reports

Status: data only, 3 datasets cited

[202] Code ↔ Paper doi:10.1038/s41598-026-54446-8 [paper, repository]

Deep learning-based Desikan-Killiany parcellation of the brain using diffusion MRI.

Journal: Scientific reports

Authors' code: xmindflow/DKParcellationdMRI (Apache-2.0)

Status: code verified, 18 files readable, 6 matches

Tuesday, 2 June 2026 (8 papers)

[203] doi:10.1021/acs.jcim.5c02891 [paper, data]

Overrepresentation Bias Leads to Performance Overestimation in Blood-Brain Barrier Permeability Prediction Models: Characterization and Mitigation.

Journal: Journal of chemical information and modeling

Status: data only, 1 dataset cited

[204] doi:10.1002/advs.75905 [paper, data]

stMixer for Scalable Mosaic Integration and Label Transfer in Spatial Histology and Multi-Omics.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 2 datasets cited

[205] doi:10.1371/journal.pone.0348879 [paper, data]

Integrated hierarchical surface restructuring of assembled electrode arrays for next-generation neural interfaces.

Journal: PloS one

Status: data only, 1 dataset cited

[206] Code ↔ Paper doi:10.1016/j.crmeth.2026.101473 [paper, repository]

AmygdalaGo-BOLT for boundary-aware segmentation of the human amygdala.

Journal: Cell reports methods

Authors' code: zuoxinian/ccs (GPL-2.0)

Status: code verified, 732 files readable, 2 matches

[207] Code ↔ Paper doi:10.1038/s41467-026-73687-9 [paper, repository]

Automatic selection of the best neural architecture for time series forecasting.

Journal: Nature communications

Authors' code: qianyingcao/Selection_Architecture_MOO (no license)

Status: code verified, 42 files readable, 6 matches

[208] Code ↔ Paper doi:10.1162/imag.a.1183 [paper, repository]

Learning-based segmentation of diffusion-weighted MR images with arbitrary <i>q</i>-space samplings.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: liziyu0929/DeepAnat (MIT), zhangfanmark/DDParcel (Unlicense), Deep-MI/DISCUSseg (Apache-2.0)

Status: code verified, 63 files readable, 11 matches

[209] doi:10.3390/diagnostics16111705 [paper, data]

Cross-Dataset Generalization of Deep Learning-Based Detectors for Intracranial Hemorrhage Subtype Localization on Noncontrast Head CT: A Comparative Study.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[210] Code ↔ Paper doi:10.1016/j.mex.2026.103986 [paper, repository]

A reproducible EEG-ERP methodology for assessing cognitive decline: integrating P300 latency and resting-state EEG frequency.

Journal: MethodsX

Authors' code: Zenodo 10614201 (CC-BY-4.0)

Status: empty repository

Monday, 1 June 2026 (9 papers)

[211] Code ↔ Paper doi:10.1093/bioinformatics/btag253 [paper, repository]

PEARL: integrative multi-omics classification and omics feature discovery via deep graph learning.

Journal: Bioinformatics (Oxford, England)

Authors' code: zqq121017/PEARL (no license)

Status: code verified, 6 files readable, 3 matches

[212] Code ↔ Paper doi:10.1093/bioinformatics/btag328 [paper, repository]

eFEL: electrophysiology feature extraction library.

Journal: Bioinformatics (Oxford, England)

Authors' code: berenslab/ephyspy (GPL-3.0), AllenInstitute/ipfx (BSD-2-Clause), openbraininstitute/eFEL (GPL-3.0), Zenodo 8283490 (Apache-2.0), Zenodo 14002264 (LGPL-3.0), bluebrain/bluepyefe (LGPL-3.0), bluebrain/bluepyemodel (Apache-2.0)

Status: code verified, 759 files readable, 10 matches

[213] doi:10.1093/bioinformatics/btag336 [paper, data]

ChromCall: assigning chromatin status to defined genomic regions using epigenomic profiling data.

Journal: Bioinformatics (Oxford, England)

Status: data only, 1 dataset cited

[214] doi:10.1038/s41597-026-07476-w [paper, data]

EEG-Controlled Exoskeleton for Walking and Standing: A Longitudinal Multimodal Dataset of Healthy Individuals.

Journal: Scientific data

Status: data only, 2 datasets cited

[215] Code ↔ Paper doi:10.1038/s41598-026-50946-9 [paper, repository]

Fixation-related potentials reveal that confusing program code elicits a late frontal positivity.

Journal: Scientific reports

Authors' code: Zenodo 14229848 (CC-BY-4.0), brains-on-code/AoC-FRP-Code (CC-BY-4.0)

Status: code verified, 213 files readable, 5 matches

[216] Code ↔ Paper doi:10.1038/s41598-026-55299-x [paper, repository]

SRM-CSR: unsupervised aspect category detection based on semantic-aware relevance modeling and contextual sentence representation.

Journal: Scientific reports

Authors' code: ruidan/unsupervised-aspect-extraction (Apache-2.0), teapot123/JASen (no license)

Status: code verified, 19 files readable, 1 match

[217] Code ↔ Paper doi:10.3390/molecules31111884 [paper, repository]

Drift-Robust Lightweight Deep Learning on Open Gas Sensor Benchmarks: A Reproducible Architecture Study with CBRN Applicability Mapping.

Journal: Molecules (Basel, Switzerland)

Authors' code: bisu9082/LiteSensor-Net (Apache-2.0)

Status: code verified, 36 files readable, 16 matches

[218] doi:10.1016/j.dib.2026.112926 [paper, data]

Synthetic dataset of PLGA and liposome nanocarrier formulations for brain-cancer-relevant drug delivery, release, blood-brain-barrier transport, and paired cell-viability proxies.

Journal: Data in brief

Status: data only, 3 datasets cited

[219] Code ↔ Paper doi:10.1111/psyp.70352 [paper, repository]

Preprocessing on the Go: Practices in Gait-Related Mobile EEG.

Journal: Psychophysiology

Authors' code: vaishalivinod/LitExtract (no license), neurogeriatricskiel/LitExtract (no license)

Status: code verified, 36 files readable, 9 matches

Saturday, 30 May 2026 (1 paper)

[220] Code ↔ Paper doi:10.1002/mrm.70451 [paper, repository]

Atlas of Brain Glucose Metabolism Using Deuterium Metabolic Imaging at 3 T.

Journal: Magnetic resonance in medicine

Authors' code: figshare 31241707 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

Friday, 29 May 2026 (2 papers)

[221] Code ↔ Paper doi:10.1038/s41597-026-07514-7 [paper, repository]

HORDB 2.0: a comprehensive dataset of peptide hormones.

Journal: Scientific data

Authors' code: accessdata.fda.gov/scripts/cder (no license), ema.europa.eu/en/medicines (no license)

Status: code verified

[222] Code ↔ Paper doi:10.1186/s12911-026-03591-1 [paper, repository]

Different pattern: a new EEG-based method for mental performance detection.

Journal: BMC medical informatics and decision making

Authors' code: mhmtbygn/Mental_Perfomance_Classification (MIT)

Status: code verified, 5 files readable, 6 matches

Thursday, 28 May 2026 (6 papers)

[223] Code ↔ Paper doi:10.1038/s41467-026-73825-3 [paper, repository]

Volatile self-selective memristive neuron for millisecond-latency neuromorphic object detection at the edge.

Journal: Nature communications

Authors' code: VisDrone/VisDrone-Dataset (no license)

Status: empty repository, 1 file readable

[224] Code ↔ Paper doi:10.1038/s41598-026-50475-5 [paper, repository]

Segmentation and classification of hippocampal subregions using multi-task generative adversarial networks.

Journal: Scientific reports

Authors' code: MLBC-lab/MT-UGAN (MIT)

Status: code verified, 10 files readable, 6 matches

[225] doi:10.1038/s41598-026-50857-9 [paper, data]

EEG-based stress classification using time-domain features and segmentation techniques.

Journal: Scientific reports

Status: data only, 1 dataset cited

[226] Code ↔ Paper doi:10.1038/s41598-026-55584-9 [paper, repository]

Reproducible benchmark of wavelet-enhanced intrabody communication biometric identification.

Journal: Scientific reports

Authors' code: dryjins/ibc-wavelet-benchmark (MIT)

Status: code verified, 30 files readable, 14 matches

[227] doi:10.3390/s26113410 [paper, data]

An Arduino-Based, Portable Prototype for the Recording and Analysis of EEG Signals to Support Self-Detection and Self-Monitoring of Stress.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[228] doi:10.3390/pharmaceutics18060670 [paper, data]

Predicting Blood-Brain Barrier Permeability from Experimental Data: An Interpretable and Externally Validated Machine Learning Framework.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

Wednesday, 27 May 2026 (1 paper)

[229] Code ↔ Paper doi:10.1038/s41540-026-00749-5 [paper, repository]

A novel approach to quantify out-of-distribution uncertainty in Neural and Universal Differential Equations.

Journal: NPJ systems biology and applications

Authors' code: cosbi-research/UQNU (other)

Status: code verified, 663 files readable, 1 match

Tuesday, 26 May 2026 (3 papers)

[230] doi:10.1038/s41598-026-54422-2 [paper, data]

Hybrid topic classification approach integrating TF-IDF, BiGRU, and modified builder optimization algorithm (MBOA).

Journal: Scientific reports

Status: data only, 1 dataset cited

[231] Code ↔ Paper doi:10.1038/s41598-026-55179-4 [paper, repository]

Vision-Language Models for automated quality control: a benchmarking framework and comprehensive study.

Journal: Scientific reports

Authors' code: mzahana/vlm-bench (no license)

Status: code verified, 53 files readable, 3 matches

[232] Code ↔ Paper doi:10.1093/sleepadvances/zpag051 [paper, repository]

What matters beyond model choice for wearable sleep staging? How personalization, evaluation choices, and easy-to-classify wake impact performance.

Journal: Sleep advances : a journal of the Sleep Research Society

Authors' code: arcascope/pisces2 (MIT)

Status: code verified, 91 files readable, 4 matches

Monday, 25 May 2026 (3 papers)

[233] Code ↔ Paper doi:10.1038/s41598-026-53337-2 [paper, repository]

Progression-guided spatiotemporal memory transformers for accurate and consistent longitudinal brain tumor segmentation.

Journal: Scientific reports

Authors' code: skbsangeetha/Progression-Guided-Spatiotemporal-Memory-Transformers-for-Brain-Tumor-Segmentation (no license)

Status: code verified, 15 files readable, 3 matches

[234] Code ↔ Paper doi:10.1038/s41598-026-53876-8 [paper, repository]

A multi-domain graph-integrated neural framework for robust acoustic anomaly detection under adverse environmental conditions.

Journal: Scientific reports

Authors' code: sumit945/Anomaly-Detection (MIT)

Status: code verified, 23 files readable, 30 matches

[235] doi:10.1186/s40708-026-00308-y [paper, data]

Generative diffusion meets domain adaptation: a framework for EEG cross-subject motor imagery classification.

Journal: Brain informatics

Status: data only, 1 dataset cited

Saturday, 23 May 2026 (1 paper)

[236] Code ↔ Paper doi:10.1016/j.ohx.2026.e00797 [paper, repository]

Development of an automated REM sleep deprivation device for mice in neuroscience research.

Journal: HardwareX

Authors' code: OSF r3u5g (no license)

Status: code verified

Friday, 22 May 2026 (1 paper)

[237] Code ↔ Paper doi:10.3390/diagnostics16111588 [paper, repository]

Bridging Annotation Gaps: Hierarchical Self-Support Learning for Brain Tumor Segmentation.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: sqbqamar/HAGSS (no license)

Status: code verified, 18 files readable, 15 matches

Thursday, 21 May 2026 (4 papers)

[238] Code ↔ Paper doi:10.1038/s41597-026-07421-x [paper, repository]

The Brain Imaging and Neurophysiology Dataset of large-scale multimodal neural data.

Journal: Scientific data

Authors' code: bdsp-core/BigBrainImagingDatabase (CC-BY-NC-4.0)

Status: code verified, 5 files readable, 4 matches

[239] Code ↔ Paper doi:10.1038/s41598-026-52322-z [paper, repository]

A transparent wheel-based platform for locomotion-on-demand and multi-view body and facial kinematics in head-fixed mice.

Journal: Scientific reports

Authors' code: OSF k9j3b (no license), neuromomentumlab/AIR_Wheel_Methods (no license)

Status: code verified, 64 files readable, 19 matches

[240] doi:10.1038/s41598-026-52658-6 [paper, data]

A multi-level attention CNN-transformer based framework for the detection of brain tumor using regional dual-score explainability.

Journal: Scientific reports

Status: data only, 1 dataset cited

[241] doi:10.3389/fnhum.2026.1807535 [paper, data]

The ASME-speller: 30-class auditory brain-computer interface speller using stream segregation and the QWERTY layout.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

Wednesday, 20 May 2026 (2 papers)

[242] Code ↔ Paper doi:10.1038/s41598-026-52330-z [paper, repository]

SHAP analysis of an improved EEG-based mental workload classification framework: utilizing data augmentation and explainable AI.

Journal: Scientific reports

Authors' code: 213112003/EEG-Based-Mental-Workload-Classification (no license)

Status: code verified, 3 files readable, 6 matches

[243] Code ↔ Paper doi:10.3390/gels12050449 [paper, repository]

Machine-Learning-Enabled Hydrogel Biosensors for Wearable Health Monitoring.

Journal: Gels (Basel, Switzerland)

Authors' code: figshare 30017716 (CC-BY-4.0)

Status: empty repository

Tuesday, 19 May 2026 (3 papers)

[244] doi:10.1038/s41598-026-50603-1 [paper, data]

A multi-class framework for face mask compliance detection using lightweight deep learning models.

Journal: Scientific reports

Status: data only, 1 dataset cited

[245] Code ↔ Paper doi:10.1038/s41586-026-10658-6 [paper, repository]

An AI system to help scientists write expert-level empirical software.

Journal: Nature

Authors' code: salesforceairesearch/gift-eval (Apache-2.0), google-research/era (Apache-2.0)

Status: code verified, 64 files readable, 11 matches

[246] doi:10.1038/s41597-026-07461-3 [paper, data]

Multimodal ultra-high-field MRI, clinical, cognitive, and genetic profiles across the ALS-FTD spectrum.

Journal: Scientific data

Status: data only, 2 datasets cited

Monday, 18 May 2026 (2 papers)

[247] doi:10.1007/s11571-026-10464-w [paper, data]

The AHEPA EEG benchmark: setting the standard for machine learning in dementia diagnosis, a scoping review.

Journal: Cognitive neurodynamics

Status: data only, 2 datasets cited

[248] Code ↔ Paper doi:10.3390/e28050562 [paper, repository]

A Comparative Analysis of Explainable AI (XAI) Techniques for Transparent and Reliable Image Classification.

Journal: Entropy (Basel, Switzerland)

Authors' code: AMLRL-ODU/CompareXAI (Apache-2.0)

Status: code verified, 22 files readable, 2 matches

Sunday, 17 May 2026 (1 paper)

[249] Code ↔ Paper doi:10.1002/mrm.70438 [paper, repository]

Quantifying Cardiac, Respiratory, and Low Frequency Components of CSF Motion From fMRI Inflow Effects.

Journal: Magnetic resonance in medicine

Authors' code: Buntess/fMRI-Flow-Quantification (no license)

Status: code verified, 13 files readable, 3 matches

Saturday, 16 May 2026 (1 paper)

[250] Code ↔ Paper doi:10.1038/s41598-026-50997-y [paper, repository]

Comprehensive benchmarking and explainable machine learning analysis of EEG imagery activity recognition.

Journal: Scientific reports

Authors' code: kaggle.com/code/gcdatkin (no license)

Status: dead link

Friday, 15 May 2026 (2 papers)

[251] doi:10.1038/s41598-026-48795-7 [paper, data]

Sustainable science mapping: benchmarking green AI against transformers for cross-disciplinary abstract classification using arXiv.

Journal: Scientific reports

Status: data only, 1 dataset cited

[252] doi:10.1038/s41598-026-51023-x [paper, data]

Adaptive patch sampling and location-aware reasoning for whole body PET-CT multi-organ segmentation.

Journal: Scientific reports

Status: data only, 1 dataset cited

Thursday, 14 May 2026 (2 papers)

[253] Code ↔ Paper doi:10.1371/journal.pcbi.1013499 [paper, repository]

VesiclePy: A machine learning vesicle analysis toolbox for volume electron microscopy.

Journal: PLoS computational biology

Authors' code: pytorchconnectomics/vesiclepy (MIT), Zenodo 16644943 (CC-BY-4.0)

Status: code verified, 67 files readable, 4 matches

[254] doi:10.1038/s41598-026-50240-8 [paper, data]

High-precision brain tumor segmentation with switchable normalization in faster R-CNN architecture.

Journal: Scientific reports

Status: data only, 3 datasets cited

Wednesday, 13 May 2026 (5 papers)

[255] Code ↔ Paper doi:10.21203/rs.3.rs-9188548/v1 [paper, repository]

Automated Longitudinal MRI Assessments of Diffuse Midline Gliomas: A Large Multi-Institutional Study

Journal: Research Square (preprint)

Authors' code: rauschecker-sugrue-labs/DMG-Longitudinal (MIT)

Status: code verified, 15 files readable, 6 matches

[256] doi:10.1038/s41598-026-48825-4 [paper, data]

YOLO-LS: a novel deep learning framework for brain tumor segmentation in Magnetic Resonance Imaging.

Journal: Scientific reports

Status: data only, 2 datasets cited

[257] doi:10.1016/j.crmeth.2026.101455 [paper]

An optimized method to visualize lipid droplets in mouse brain tissue.

Journal: Cell reports methods

Status: code on request

[258] Code ↔ Paper doi:10.3390/bioengineering13050549 [paper, repository]

High-to-Low Spectral Mapping for Cross-System Feature Adaptation in Medical Hyperspectral Imaging.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: git.iuma.ulpgc.es/stratum/public (no license)

Status: code verified

[259] doi:10.3390/diagnostics16101478 [paper]

Autistic vs. Control Differences in MRI Scan Quality Across ABIDE-II Sites.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request

Tuesday, 12 May 2026 (5 papers)

[260] Code ↔ Paper doi:10.1088/1741-2552/ae5f4b [paper, repository]

logLIRA: a method for reliable suppression of electrical stimulation artifacts enabling short-latency neural response recovery.

Journal: Journal of neural engineering

Authors' code: barbaLab/logLIRA (no license), barbaLab/logLIRA-benchmark (no license)

Status: code verified, 45 files readable, 7 matches

[261] doi:10.1007/s10548-026-01214-6 [paper, data]

Operational Transformer: An investigation of epilepsy detection.

Journal: Brain topography

Status: data only, 1 dataset cited

[262] Code ↔ Paper doi:10.1038/s41467-026-72796-9 [paper, repository]

Local graph estimation with pathwise false discovery control.

Journal: Nature communications

Authors' code: omelikechi/localgraph-paper (MIT), omelikechi/localgraph (MIT), Zenodo 19655606 (MIT)

Status: code verified, 120 files readable, 19 matches

[263] Code ↔ Paper doi:10.1038/s41597-026-07077-7 [paper, repository]

Everyday Activity Science and Engineering Table Setting Dataset.

Journal: Scientific data

Authors' code: gitlab.csl.uni-bremen.de/ease-public (no license), cognitive-systems-lab/easelan (MIT), gitlab.csl.uni-bremen.de/ease-public/tsd-one (no license), gitlab.csl.uni-bremen.de/ease-public/g.nautilus-driver (no license), gitlab.csl.uni-bremen.de/ease-public/lsl-tools (no license), gitlab.csl.uni-bremen.de/ease-public/labc (no license)

Status: code verified, 217 files readable, 9 matches

[264] Code ↔ Paper doi:10.3389/fradi.2026.1785108 [paper, repository]

BT-CAP: a subcomponent-aware and anatomically constrained data augmentation framework for multi-modal brain tumor MRI segmentation.

Journal: Frontiers in radiology

Authors' code: dramintavallaii/BT-CAP (MIT)

Status: code verified, 15 files readable, 16 matches

Monday, 11 May 2026 (10 papers)

[265] doi:10.2340/1651-226x.2026.45685 [paper]

Improving confidence in MRI-based auto-segmentation via uncertainty assessment.

Journal: Acta oncologica (Stockholm, Sweden)

Status: code on request

[266] Code ↔ Paper doi:10.1371/journal.pone.0348005 [paper, repository]

THOI: An efficient and accessible library for computing higher-order interactions enhanced by batch-processing.

Journal: PloS one

Authors' code: laouen/thoi (MIT), Zenodo 15020522 (MIT), Laouen/thoi_tutorials (CC0-1.0), Zenodo 15020335 (CC0-1.0)

Status: code verified, 95 files readable, 5 matches

[267] Code ↔ Paper doi:10.1371/journal.pone.0348610 [paper, repository]

A multi-view TSK fuzzy system with deformable Gaussian membership functions and rule-level attention for classification.

Journal: PloS one

Authors' code: marisazc010/MDA-TSK-FS (no license)

Status: code verified, 20 files readable, 5 matches

[268] Code ↔ Paper doi:10.1371/journal.pone.0347867 [paper, repository]

LiteFeatNet: A parameter-efficient and performance-centric deep learning model for multi-ocular disease identification using intermediate feature reduction from fundus images.

Journal: PloS one

Authors' code: usmanrafics/LTFTNET (MIT)

Status: code verified, 5 files readable, 3 matches

[269] Code ↔ Paper doi:10.1038/s41597-026-07185-4 [paper, repository]

A multi-center cross-platform single-cell multimodal atlas of the mouse cerebral cortex.

Journal: Scientific data

Authors' code: figshare 30672836 (CC-BY-4.0)

Status: code verified, 2 files readable, 19 matches

[270] Code ↔ Paper doi:10.3758/s13428-026-03034-9 [paper, repository]

Advantages and artifacts of high-speed OLED monitors for vision, eye-tracking, and EEG research.

Journal: Behavior research methods

Authors' code: richardschweitzer/OnlineSaccadeDetection (GPL-3.0), OSF 8h4fg (no license)

Status: code verified, 19 files readable, 18 matches

[271] doi:10.1038/s41598-026-51942-9 [paper, data]

Quantum SVM-driven framework for accurate brain stroke classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[272] Code ↔ Paper doi:10.1016/j.nicl.2026.104001 [paper, repository]

Effect of vascular lesion preprocessing on Brain Intensity AbNormality Classification Algorithm (BIANCA) white matter hyperintensity segmentation.

Journal: NeuroImage. Clinical

Authors' code: mendeltem/Bianca_Evaluation (no license)

Status: code verified, 35 files readable, 28 matches

[273] Code ↔ Paper doi:10.3389/fnins.2026.1816533 [paper, repository]

LFP-LOC: an LFP power-based method for validating the anatomical placement of high-density neural probes in rodents.

Journal: Frontiers in neuroscience

Authors' code: raffaele222/LFP-LOC (MIT)

Status: code verified, 7 files readable, 13 matches

[274] Code ↔ Paper doi:10.1016/j.patter.2026.101560 [paper, repository]

Automating region selection with genetic algorithms for energy landscape analyses of brain dynamics.

Journal: Patterns (New York, N.Y.)

Authors' code: MIS-Lab-Doshisha/ela-gaopt (Apache-2.0), Zenodo 19212556 (Apache-2.0)

Status: code verified, 23 files readable, 2 matches

Sunday, 10 May 2026 (2 papers)

[275] Code ↔ Paper doi:10.1002/mrm.70416 [paper, repository]

Fast and Robust Diffusion Posterior Sampling for MR Image Reconstruction Using the Preconditioned Unadjusted Langevin Algorithm.

Journal: Magnetic resonance in medicine

Authors' code: gitlab.tugraz.at/ibi/mrirecon/papers/dps-pula (no license)

Status: code verified, 37 files readable, 6 matches

[276] doi:10.1002/mrm.70429 [paper]

Ultrafast fMRI Detects Age-Related Changes in Harmonics of Cardiac Pulsations in the Brain at 7 T.

Journal: Magnetic resonance in medicine

Status: code on request

Friday, 8 May 2026 (4 papers)

[277] doi:10.1016/j.neuroimage.2026.121986 [paper]

Automated detection of cerebral microbleeds on ex-vivo MRI scans of community-based older adults.

Journal: NeuroImage

Status: code on request

[278] doi:10.3389/fnins.2026.1817743 [paper, data]

Estimation of head motion in structural MRI and its impact on cortical morphometry.

Journal: Frontiers in neuroscience

Status: data only, 13 datasets cited

[279] doi:10.3389/fnins.2026.1815732 [paper, data]

Dataset of chronic intracranial EEG of epilepsy patients via responsive neurostimulation system.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[280] Code ↔ Paper doi:10.3389/fnbeh.2026.1819512 [paper, repository]

iMOSS: an integrated open-source tail suspension test platform for high-resolution immobility scoring and synchronization with neural activity.

Journal: Frontiers in behavioral neuroscience

Authors' code: addy9908/iMOSS (MIT)

Status: code verified, 15 files readable, 7 matches

Thursday, 7 May 2026 (1 paper)

[281] doi:10.1016/j.dib.2026.112822 [paper, data]

Human experience in regulated offices (HERO) dataset: Synchronized multimodal physiological, environmental, perceptual, and video-derived measurements across structured office activities in a controlled indoor setting.

Journal: Data in brief

Status: data only, 1 dataset cited

Wednesday, 6 May 2026 (1 paper)

[282] doi:10.1038/s41598-026-48670-5 [paper, data]

EEG-based harmful brain activity classification using deep learning and feature fusion.

Journal: Scientific reports

Status: data only, 1 dataset cited

Tuesday, 5 May 2026 (3 papers)

[283] Code ↔ Paper doi:10.1186/s40708-026-00305-1 [paper, repository]

Benchmarking resting state fMRI connectivity pipelines for classification: robust accuracy despite processing variability in cross-site eye state prediction.

Journal: Brain informatics

Authors' code: ihb-ibr-department/benchmarkingeoec](https: (no license)

Status: dead link

[284] Code ↔ Paper doi:10.1016/j.crmeth.2026.101429 [paper, repository]

DRIFT-EM enables direct wafer retrieval of ultrathin serial sections for large-volume electron microscopy.

Journal: Cell reports methods

Authors' code: Zenodo 19380076 (CC-BY-4.0), figshare 31836088 (CC-BY-4.0), Zenodo 19372693 (MIT), Zenodo 19380050 (CC-BY-4.0), boergens/DRIFT-EM (no license), templiert/MagC (GPL-3.0)

Status: code verified, 43 files readable, 3 matches

[285] Code ↔ Paper doi:10.1038/s41597-026-07356-3 [paper, repository]

A dataset of EEG and ECG recordings around the onset of NREM sleep from infancy to adolescence.

Journal: Scientific data

Authors' code: nstevensonUH/EEG_release_supporting_code (MIT), sccn.ucsd.edu/eeglab/index.php (no license)

Status: code verified, 35 files readable, 9 matches

Monday, 4 May 2026 (2 papers)

[286] doi:10.1371/journal.pbio.3003773 [paper, data]

An anatomical and connectivity atlas of the tree shrew brain to bridge rodent and primate neuroanatomy.

Journal: PLoS biology

Status: data only, 1 dataset cited

[287] Code ↔ Paper doi:10.2196/80286 [paper, repository]

At-Home Sleep Electroencephalography Assessment in Young and Older Adults Using a Novel Wireless Soft Electronics Sleep Monitoring System: Experimental Study.

Journal: JMIR formative research

Authors' code: OSF gjcyu (no license)

Status: code verified, 20 files readable, 5 matches

Saturday, 2 May 2026 (6 papers)

[288] doi:10.1007/s10072-026-09052-x [paper, data]

Reliability and construct validity of the Italian version of AMAT scale in SBMA subjects.

Journal: Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology

Status: data only, 1 dataset cited

[289] doi:10.1038/s41467-026-71835-9 [paper, data]

In vivo imaging of central nervous system fluid spaces using synchrotron radiation-based micro computed tomography.

Journal: Nature communications

Status: data only, 11 datasets cited

[290] Code ↔ Paper doi:10.1038/s41597-026-07204-4 [paper, repository]

SSD-DIS: A Semi-Synthetic Shadow Dataset for Document Images.

Journal: Scientific data

Authors' code: Jane54542/SSD-DIS (no license)

Status: code verified, 2 files readable

[291] doi:10.1038/s41598-026-50003-5 [paper, data]

Federated learning-enabled privacy-preserving framework for seizure forecasting and affective state analysis using multi-modal EEG-ECG data.

Journal: Scientific reports

Status: data only, 2 datasets cited

[292] Code ↔ Paper doi:10.1038/s41598-026-51120-x [paper, repository]

A compact and interpretable multi-source framework for heterogeneous medical image classification.

Journal: Scientific reports

Authors' code: W-ayivi/ML-ConvNet (MIT)

Status: empty repository, 1 file readable

[293] doi:10.3390/biomimetics11050314 [paper, data]

Biologically Inspired Medical Multi-Modal Dataset Distillation via Contrast-Aware Alignment and Memory Compression.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 1 May 2026 (8 papers)

[294] Code ↔ Paper doi:10.1002/nbm.70263 [paper, repository]

Cross-Site Generalization of CNN-Based $$ {B}_1^{+} $$ Mapping in UHF MRI.

Journal: NMR in biomedicine

Authors' code: hkimon/B1P_Mapping_CCN (no license)

Status: code verified, 5 files readable, 2 matches

[295] Code ↔ Paper doi:10.1093/bioinformatics/btag169 [paper, repository]

Bidirectional Mamba-2 boosts EEG super-resolution via regression and diffusion.

Journal: Bioinformatics (Oxford, England)

Authors' code: UgoLomoio/DiBiMa-EEGSR (MIT), huggingface.co/ugo96/dibima-eegsr (MIT), huggingface.co/spaces/ugo96/dibima-eegsr-demo (MIT)

Status: code verified, 30 files readable, 18 matches

[296] doi:10.1007/s12021-026-09785-2 [paper, data]

Template-Based Label Propagation for Mouse Brain MRI Skull Stripping.

Journal: Neuroinformatics

Status: data only, 2 datasets cited

[297] doi:10.3390/s26092822 [paper, data]

Multi-Chaotic HEOA for Hardware-Aware Neural Architecture Search: Brain Tumor Classification on FPGA.

Journal: Sensors (Basel, Switzerland)

Status: code on request, 1 dataset cited

[298] Code ↔ Paper doi:10.3389/fnimg.2026.1753534 [paper, repository]

Anatomically constrained volumetric smoothing enhances fMRI reliability while avoiding smoothing artifacts.

Journal: Frontiers in neuroimaging

Authors' code: ellisdg/csmooth (Apache-2.0)

Status: code verified, 15 files readable, 3 matches

[299] Code ↔ Paper doi:10.1093/bib/bbag275 [paper, repository]

Nonlinear kernel-based high-dimensional inference for set-based genetic association studies.

Journal: Briefings in bioinformatics

Authors' code: zhangzechen123/NL-HSIM (MIT)

Status: code verified, 41 files readable, 1 match

[300] Code ↔ Paper doi:10.1093/bib/bbag298 [paper, repository]

Empowering multifaceted analysis of spatial transcriptomics data with RGAST.

Journal: Briefings in bioinformatics

Authors' code: pypi.org/project/rgast (no license), GYQ-form/RGAST (MIT)

Status: code verified, 14 files readable, 11 matches

[301] Code ↔ Paper doi:10.1093/bib/bbag331 [paper, repository]

SPOmiAlign: a modality-agnostic computational framework for multimodal spatial omics alignment enabled by a feature matching foundation model.

Journal: Briefings in bioinformatics

Authors' code: cortex-lab/allenccf (no license), gpenglab/misar-seq (no license), bioinfo-biols/flow2spatial (GPL-3.0), wangyiyuyang/SPOmiAlign (no license)

Status: code verified, 163 files readable, 8 matches

Saturday, 18 April 2026 (3 papers)

[302] Code ↔ Paper doi:10.1038/s41597-026-07248-6 [paper, repository]

A large-scale fMRI dataset for vision-language semantic association.

Journal: Scientific data

Authors' code: lishurui0612/caption_scene_dataset (CC-BY-NC-ND-4.0)

Status: code verified, 32 files readable, 7 matches

[303] doi:10.1038/s41598-026-38998-3 [paper, data]

Contextual deep learning for accurate news article categorisation with pre-trained embeddings.

Journal: Scientific reports

Status: data only, 1 dataset cited

[304] Code ↔ Paper doi:10.1038/s41597-026-07242-y [paper, repository]

High-Density EEG and Multi-Muscle EMG Dataset during Object Prehension with a sensorized Grasping Box in Humans.

Journal: Scientific data

Authors' code: OSF g6yta (no license)

Status: code verified, 13 files readable, 4 matches

Friday, 17 April 2026 (4 papers)

[305] Code ↔ Paper doi:10.1007/s00234-026-03993-y [paper, repository]

A comprehensive framework for automated segmentation of perivascular spaces in brain MRI with the nnU-Net.

Journal: Neuroradiology

Authors' code: wpham17/nnUNet-Perivascular-Spaces (MIT)

Status: code verified, 15 files readable, 1 match

[306] Code ↔ Paper doi:10.1186/s40708-026-00298-x [paper, repository]

SegAnyNeuron: a neural image segmentation network with strong generalization performance by modeling image intensity variation.

Journal: Brain informatics

Authors' code: FateUBW0227/Feature_generation_for_SegAnyNeuron (no license), FateUBW0227/Training_code_for_SegAnyNeuron (no license)

Status: code verified, 938 files readable, 2 matches

[307] doi:10.1038/s41467-026-72114-3 [paper, data]

Spatial transcriptomic atlas of murine neurotoxocariasis reveals region-specific host responses and dysfunction in the brain.

Journal: Nature communications

Status: data only, 2 datasets cited

[308] Code ↔ Paper doi:10.1038/s41597-026-07270-8 [paper, repository]

Whole-genome DNA methylation profile of female Gobiocypris rarus brains at three age stages.

Journal: Scientific data

Authors' code: He-Yongfeng/rare_minnow_brain_methylome_analysis (no license), Zenodo 19108131 (CC-BY-4.0)

Status: code verified, 20 files readable, 2 matches

Thursday, 16 April 2026 (6 papers)

[309] Code ↔ Paper doi:10.1371/journal.pone.0346575 [paper, repository]

Statistically valid explainable black-box machine learning: applications in sex classification across species using brain imaging.

Journal: PloS one

Authors' code: google/yggdrasil-decision-forests (Apache-2.0), neurodata/sex_classification (no license), neurodata/treeple (other)

Status: code verified, 1,050 files readable, 9 matches

[310] doi:10.1038/s41597-026-07223-1 [paper, data]

An EEG dataset for understanding driving expertise from naturalistic urban road experiments.

Journal: Scientific data

Status: data only, 2 datasets cited

[311] Code ↔ Paper doi:10.1038/s41597-026-07244-w [paper, repository]

An Open Non-Invasive EEG Dataset for Spontaneous Auditory Attention Switch Decoding.

Journal: Scientific data

Authors' code: XXuefeii/AASD-Processing (no license)

Status: code verified, 10 files readable, 2 matches

[312] Code ↔ Paper doi:10.1186/s12938-026-01555-0 [paper, repository]

Incorporating normal periventricular changes for enhanced pathological white matter hyperintensity segmentation: on multiclass deep learning approaches.

Journal: Biomedical engineering online

Authors' code: Mahdi-Bashiri/wmh-normal-abnormal-segmentation (MIT)

Status: code verified, 12 files readable, 17 matches

[313] Code ↔ Paper doi:10.3390/s26082440 [paper, repository]

Suppressing Non-Stationary Motion Artefacts in Mobile EEG Using Generalized Eigenvalue Decomposition.

Journal: Sensors (Basel, Switzerland)

Authors' code: Zenodo 17471748 (CC-BY-4.0), Zenodo 17471747 (CC-BY-4.0)

Status: code verified, 4 files readable

[314] doi:10.1016/j.dib.2026.112785 [paper, data]

Experimental datasets on intermittency and observability in networks of electronic oscillators. Analogue and hybrid configuration.

Journal: Data in brief

Status: data only, 2 datasets cited

Wednesday, 15 April 2026 (3 papers)

[315] doi:10.3390/jimaging12040170 [paper]

ARS-GS: Anisotropic Reflective Spherical 3D Gaussian Splatting.

Journal: Journal of imaging

Status: code on request

[316] doi:10.3390/s26082431 [paper, data]

Missing Data Gap Imputation Methods in Electroencephalogram (EEG) Signals: A Systematic Scoping Review.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[317] Code ↔ Paper doi:10.1016/j.isci.2026.115747 [paper, repository]

Realistic PET image synthesis from MRI for automated inference of brain atrophy and Alzheimer's.

Journal: iScience

Authors' code: Zenodo 15089724 (CC-BY-4.0), btheodorou99/MRI2PET (MIT)

Status: code verified, 124 files readable, 13 matches

Tuesday, 14 April 2026 (3 papers)

[318] doi:10.1186/s41747-026-00702-5 [paper, data]

MRI-based spatio-temporal atlas of ganglionic eminence.

Journal: European radiology experimental

Status: data only, 1 dataset cited

[319] Code ↔ Paper doi:10.1038/s41597-026-07184-5 [paper, repository]

A Multiple Sclerosis MRI Dataset with Tri-Mask Annotations for Lesion Segmentation.

Journal: Scientific data

Authors' code: Mahdi-Bashiri/MS3SEG (MIT)

Status: code verified, 26 files readable, 17 matches

[320] doi:10.3389/fnins.2026.1782306 [paper, data]

A calibration-aware hierarchical CNN-SWIN fusion framework for robust Cross-Dataset brain MRI analysis.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

Monday, 13 April 2026 (5 papers)

[321] doi:10.1371/journal.pdig.0001158 [paper, data]

MultiMindNet: AI-based mental health analysis using hybrid deep learning approach and Hybrid Ant-Grey Wolf Optimization (HAGWO) algorithm.

Journal: PLOS digital health

Status: data only, 2 datasets cited

[322] Code ↔ Paper doi:10.1038/s41598-026-48475-6 [paper, repository]

Optimized U-net model for precise retinal blood vessel segmentation from colour fundus images.

Journal: Scientific reports

Authors' code: supp:PMC13234283/41598_2026_48475_MOESM1_ESM.ipynb (no license), supp:PMC13234283/41598_2026_48475_MOESM2_ESM.ipynb (no license), supp:PMC13234283/41598_2026_48475_MOESM3_ESM.ipynb (no license)

Status: code verified, 3 files readable, 4 matches

[323] doi:10.1186/s12984-026-01969-w [paper, data]

Improving motor imagery decoding methods for an EEG-based mobile brain-computer interface in the context of the 2024 Cybathlon.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request, 1 dataset cited

[324] doi:10.3389/fonc.2026.1738658 [paper, data]

Retrospection dropout bare-bones particle swarm optimization for feature-based brain tumor classification in MRI images.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[325] Code ↔ Paper doi:10.21037/qims-2025-aw-2093 [paper, repository]

Outer retinal band segmentation in healthy subjects: comparative study between human grading and deep convolutional neural networks.

Journal: Quantitative imaging in medicine and surgery

Authors' code: Joao-afonso11/OCT_segmentation (no license)

Status: code verified, 17 files readable, 1 match

Saturday, 11 April 2026 (4 papers)

[326] doi:10.1038/s41598-026-44957-9 [paper, data]

Multimodal deep feature fusion with transformer for brain tumor classification from magnetic resonance imaging.

Journal: Scientific reports

Status: data only, 2 datasets cited

[327] Code ↔ Paper doi:10.1186/s12911-026-03479-0 [paper, repository]

Synthetic cervical spine radiographs: expert validation and transfer learning for low-data settings.

Journal: BMC medical informatics and decision making

Authors' code: serag-ai/I-SynMed (no license)

Status: code verified, 6 files readable

[328] Code ↔ Paper doi:10.1038/s41598-026-48187-x [paper, repository]

Dynamic expert routing with boundary-aware decoding for accurate brain tumor segmentation from incomplete MRI data.

Journal: Scientific reports

Authors' code: Zenodo 18331077 (CC-BY-4.0)

Status: code verified, 19 files readable, 1 match

[329] doi:10.1016/j.mrl.2026.200275 [paper, data]

A hybrid deep learning framework based on VGG19 and U-Net for accurate brain tumor segmentation in MRI images.

Journal: Magnetic resonance letters

Status: data only, 1 dataset cited

Friday, 10 April 2026 (8 papers)

[330] doi:10.1038/s41597-026-07102-9 [paper, data]

Chromosome-level genome assembly and annotation of the moon jellyfish Aurelia coerulea.

Journal: Scientific data

Status: data only, 1 dataset cited

[331] doi:10.1038/s41598-026-45697-6 [paper, data]

Real-time medical images enhancement technique using Adaptive Histogram Equalization model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[332] Code ↔ Paper doi:10.1038/s41598-026-47705-1 [paper, repository]

Cross-vendor reliability of functional and structural brain connectivity in a travelling cohort.

Journal: Scientific reports

Authors' code: Zenodo 18769049 (CC-BY-4.0)

Status: code verified

[333] Code ↔ Paper doi:10.1038/s41598-026-47627-y [paper, repository]

QuantumNeuroXAI: a quantum-inspired deep learning framework with explainability for brain signal analysis and neurological disorder detection.

Journal: Scientific reports

Authors' code: venkateshwarlu-bondu/QuantumNeuroXAI (MIT), Zenodo 19200650 (MIT)

Status: code verified, 122 files readable, 5 matches

[334] Code ↔ Paper doi:10.1002/mrm.70380 [paper, repository]

The Impact and Reliability of Tissue Segmentation on In Vivo Magnetic Resonance Spectroscopy Metabolite Quantification.

Journal: Magnetic resonance in medicine

Authors' code: openneuro:ds006444 (no license), arcj-hub/BasisSetSimulation (CC0-1.0)

Status: code verified, 17 files readable, 4 matches

[335] Code ↔ Paper doi:10.1016/j.neuroimage.2026.121921 [paper, repository]

A hierarchical brain MRI atlas of the coppery titi monkey (Plecturocebus cupreus).

Journal: NeuroImage

Authors' code: ajchaudhari/ucd-tina (GPL-3.0)

Status: code verified, 2 files readable

[336] Code ↔ Paper doi:10.3389/fnetp.2026.1784539 [paper, repository]

The amplitude-amplitude cross-frequency coupling method: a step-by-step guide to quantifying physiological network interactions.

Journal: Frontiers in network physiology

Authors' code: luphysics/MODA (GPL-3.0)

Status: code verified, 72 files readable, 1 match

[337] doi:10.3390/brainsci16040405 [paper, data]

Benchmarking Multimodal Deep Fusion Strategies for Heterogeneous Neuroimaging and Cognitive Data Using a Controlled Sex Classification Task.

Journal: Brain sciences

Status: code on request, 1 dataset cited

Thursday, 9 April 2026 (4 papers)

[338] doi:10.1007/s10439-026-04093-x [paper, data]

MEG Neural Decoding Pipeline: The Issues Residing Within The Data and Methods to Improve Your Decoding Accuracy.

Journal: Annals of biomedical engineering

Status: data only, 2 datasets cited

[339] Code ↔ Paper doi:10.1038/s41597-026-07138-x [paper, repository]

Medical Spine Sagittal MRI Dataset for Segmentation and Foraminal Stenosis detection.

Journal: Scientific data

Authors' code: AISSLab2025/LSS-MRI-AISSLab-Dataset (no license)

Status: code verified, 9 files readable, 7 matches

[340] Code ↔ Paper doi:10.1038/s41597-026-07120-7 [paper, repository]

PhysioMotion Artifact: A task-driven EEG dataset with point-wise motion artifact annotations.

Journal: Scientific data

Authors' code: JiangweiYu221/PhysioMotion_Artifact (MIT), neuracle/neuracle-api (LGPL-2.1)

Status: code verified, 23 files readable, 13 matches

[341] doi:10.1016/j.neuroimage.2026.121920 [paper]

Test-retest reliability of FreeSurfer measures of neurodegeneration.

Journal: NeuroImage

Status: code on request

Wednesday, 8 April 2026 (1 paper)

[342] Code ↔ Paper doi:10.1093/nargab/lqag039 [paper, repository]

SpNeigh: spatial neighborhood and differential expression analysis for high-resolution spatial transcriptomics.

Journal: NAR genomics and bioinformatics

Authors' code: jinming-cheng/cheng_annotation_bmc_bioinfo (no license), jinming-cheng/SpNeigh (GPL-3.0), Zenodo 17505217 (GPL-3.0), jinming-cheng/Rcodes_for_figures_SpNeigh_ms (no license), Zenodo 19109340 (CC-BY-4.0)

Status: code verified, 88 files readable, 40 matches

Tuesday, 7 April 2026 (3 papers)

[343] Code ↔ Paper doi:10.1073/pnas.2535986123 [paper, repository]

The colors of images preferred by individual voxels can be used to delineate functionally distinct visually responsive brain areas.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF v5wxn (no license)

Status: code verified, 18 files readable

[344] doi:10.1162/imag.a.1191 [paper, data]

Robust functional ultrasound imaging in the awake and behaving brain: A systematic framework for motion artifact removal.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[345] Code ↔ Paper doi:10.3390/bioengineering13040430 [paper, repository]

Configurable Modular EEG Classification Framework with Multiscale Features and Ensemble Learning: A Reproducible Evaluation for Schizophrenia Detection.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: zhang470 (no license)

Status: code verified

Monday, 6 April 2026 (6 papers)

[346] Code ↔ Paper doi:10.1007/s10916-026-02374-5 [paper, repository]

Attention-Enhanced U-Net for Sensor-Efficient High-Density EEG Reconstruction in Wearable Brain Monitoring Systems.

Journal: Journal of medical systems

Authors' code: IASlab526/VEEG-A-U-Net (MIT), IASlab526/VEEG-A-U-NetAdditional (no license)

Status: code verified, 8 files readable

[347] doi:10.2196/78300 [paper, data]

Deep Learning for Content-Based Medical Image Retrieval in Picture Archiving and Communication Systems for Brain Tumor Detection: Algorithm Development and Validation.

Journal: JMIR medical informatics

Status: data only, 1 dataset cited

[348] Code ↔ Paper doi:10.1038/s41597-026-07193-4 [paper, repository]

A single-nucleus RNA-seq dataset of the colon in Pink1-deficient and wild-type mice.

Journal: Scientific data

Authors' code: figshare 30702425 (CC-BY-4.0)

Status: code verified, 1 file readable, 7 matches

[349] Code ↔ Paper doi:10.1038/s41540-026-00699-y [paper, repository]

Inferring relationships among major psychiatric disorders in a resting-state functional connectivity-informed embedding space.

Journal: NPJ systems biology and applications

Authors' code: LeonBai/rsFC_embedding (no license)

Status: code verified, 3 files readable

[350] Code ↔ Paper doi:10.1038/s41598-026-47179-1 [paper, repository]

Wavelet-enhanced autoencoder based image denoising with CNN fusion.

Journal: Scientific reports

Authors' code: Zenodo 19081947 (CC-BY-4.0)

Status: code verified, 3 files readable, 6 matches

[351] Code ↔ Paper doi:10.1162/imag.a.1198 [paper, repository]

MEPrep: A robust pipeline for multi-echo fMRI denoising and preprocessing.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: zswang-brainimaging/MEPrep (no license)

Status: code verified, 99 files readable, 6 matches

Saturday, 4 April 2026 (2 papers)

[352] Code ↔ Paper doi:10.1038/s41746-026-02594-6 [paper, repository]

A neural-symbolic AI agent system for biomedical concept mapping.

Journal: NPJ digital medicine

Authors' code: ebmlab/MedicalConceptMapping (no license)

Status: code verified, 13 files readable, 3 matches

[353] doi:10.3390/s26072245 [paper, data]

An Intelligent Evaluation Algorithm for Pilot Flight Training Ability Based on Multimodal Information Fusion.

Journal: Sensors (Basel, Switzerland)

Status: data only, 3 datasets cited

Friday, 3 April 2026 (3 papers)

[354] doi:10.1186/s40708-026-00299-w [paper, data]

Pipeline evaluation of a state-of-the-art AI algorithm for detection of focal cortical dysplasia: insights into potential failure sources.

Journal: Brain informatics

Status: code on request, 2 datasets cited

[355] Code ↔ Paper doi:10.1002/advs.202523984 [paper, repository]

INB<sup>3</sup>P: A Multi-Modal and Interpretable Co-Attention Framework Integrating Property-Aware Explanations and Memory-Bank Contrastive Fusion for Blood-Brain Barrier Penetrating Peptide Discovery.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: EuclidLv/INB-P (no license), bioai-lab.com/inbp (no license)

Status: code verified, 15 files readable, 14 matches

[356] doi:10.3390/biomimetics11040243 [paper, data]

A Novel Starfish Optimization Algorithm for Secure STAR-RIS Communications.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

Thursday, 2 April 2026 (2 papers)

[357] Code ↔ Paper doi:10.1038/s41598-026-45824-3 [paper, repository]

Solving multi-depot closed-path multiple traveling salesman problem using k-means++ hierarchical clustering and neural combinatorial networks.

Journal: Scientific reports

Authors' code: Zhao-Chunsheng/MDCP-MTSP-KHC-NCN (no license), wouterkool/attention-learn-to-route (MIT), yd-kwon/POMO (no license), fikisipi/elkai (other)

Status: code verified, 373 files readable, 8 matches

[358] Code ↔ Paper doi:10.1038/s41592-026-03057-2 [paper, repository]

CREsted: modeling genomic and synthetic cell-type-specific enhancers across tissues and species.

Journal: Nature methods

Authors' code: aertslab/CREsted (other), aertslab/create_cisTarget_databases (no license), Zenodo 17791463 (CC-BY-4.0), aertslab/CREsted-paper (MIT), Zenodo 17791384 (CC-BY-4.0), Zenodo 17202107 (MIT), aertslab/tf-mindi (other)

Status: code verified, 258 files readable, 40 matches

Wednesday, 1 April 2026 (10 papers)

[359] Code ↔ Paper doi:10.1002/hbm.70506 [paper, repository]

Revisiting Amplitude of Low-Frequency Fluctuations (ALFF) in Resting-State fMRI: Clarifications and Improvements.

Journal: Human brain mapping

Authors' code: lejianhuang/ALFF (no license)

Status: code verified, 1 file readable

[360] Code ↔ Paper doi:10.1002/hbm.70512 [paper, repository]

Precision Imaging for Intraindividual Investigation of the Reward Response.

Journal: Human brain mapping

Authors' code: DVS-Lab/night-owls (MIT)

Status: code verified, 164 files readable, 7 matches

[361] Code ↔ Paper doi:10.1002/hbm.70491 [paper, repository]

Multi-Centre Reproducibility of DTI and NODDI in White Matter Tracts Segmented Using TractFinder Across Three MRI Scanners of the Same Model.

Journal: Human brain mapping

Authors' code: aga-sierhej/inter_scanner_reproducibility (no license)

Status: code verified, 1 file readable

[362] Code ↔ Paper doi:10.1371/journal.pdig.0001316 [paper, repository]

Reliability of a convolutional neural network in segmenting multiple sclerosis lesions from MRI: Impact of data augmentation, image modality and tolerance with U-Net architecture.

Journal: PLOS digital health

Authors' code: Zenodo 16211828 (CC-BY-4.0), adamhillingerszekely/unetbrainms (no license)

Status: code verified, 18 files readable

[363] doi:10.1038/s41598-026-41250-7 [paper, data]

Cross-domain multimodal learning for stress-level prediction: a hybrid deep learning framework integrating independent EEG and facial expression datasets.

Journal: Scientific reports

Status: data only, 1 dataset cited

[364] Code ↔ Paper doi:10.1038/s41598-026-43301-5 [paper, repository]

Automated analysis of zebrafish vascular networks using the VISTA-Z pipeline.

Journal: Scientific reports

Authors' code: fishyvessels/VISTA-Z (MIT)

Status: code verified, 8 files readable, 6 matches

[365] Code ↔ Paper doi:10.1002/mp.70419 [paper, repository]

Comparing deep learning stroke segmentation in NCCT, CTA, and CTP: Accuracy, domain transfer, and temporal sampling effect.

Journal: Medical physics

Authors' code: ac74esiw/stroke_segmentation (no license)

Status: code verified, 2 files readable, 1 match

[366] Code ↔ Paper doi:10.1111/psyp.70297 [paper, repository]

Heartbeat-Evoked Responses in M/EEG: A Systematic Review of Methods With Suggestions for Analysis and Reporting.

Journal: Psychophysiology

Authors' code: PaulSteinfath/systematic-hep-review (no license), liobaenk/citation-diversity-tracking (CC0-1.0), paulsteinfath.shinyapps.io/her-systematic-review (no license), PaulSteinfath/systematic-hep (no license)

Status: code verified, 73 files readable, 17 matches

[367] Code ↔ Paper doi:10.3389/frai.2026.1771088 [paper, repository]

Few-shot deployment of pretrained MRI transformers in brain imaging tasks.

Journal: Frontiers in artificial intelligence

Authors' code: MengyuLiGit/MAE-FUnet-MRI-finetune (MIT)

Status: code verified, 543 files readable, 10 matches

[368] doi:10.1117/1.nph.13.2.025004 [paper]

Data-driven optimization of preschoolers' hemodynamic response in a VR setup: advancing analytic methods for children's fNIRS naturalistic data with the AICopt method.

Journal: Neurophotonics

Status: code on request

2025 (5 papers)

[369] Code ↔ Paper doi:10.1117/1.nph.12.2.025011 [paper, repository]

NIRSTORM: a Brainstorm extension dedicated to functional near-infrared spectroscopy data analysis, advanced 3D reconstructions, and optimal probe design

Journal: —

Authors' code: Nirstorm/nirstorm (GPL-3.0)

Status: code verified, 153 files readable, 22 matches

[370] Code ↔ Paper doi:10.1038/s41597-025-05174-7 [paper, repository]

A large-scale MEG and EEG dataset for object recognition in naturalistic scenes

Journal: —

Authors' code: BNUCNL/NaturalVisionProject (no license), colehank/NOD-MEEG (MIT)

Status: code verified, 76 files readable, 10 matches

[371] Code ↔ Paper doi:10.1038/s41597-025-06397-4 [paper, repository]

MEG-SCANS - A comprehensive magnetoencephalography speech dataset with Stories, Chirps and Noisy Sentences

Journal: —

Authors' code: tillhabersetzer/MEG-SCANS (BSD-3-Clause), Zenodo 17397581 (BSD-3-Clause)

Status: code verified, 94 files readable, 16 matches

[372] Code ↔ Paper doi:10.1038/s41598-025-28583-5 [paper, repository]

SmartERD: a pipeline for referencing subjects to a common peak in the analysis of ERD dynamics

Journal: —

Authors' code: Zenodo 17534724 (GPL-3.0), sdpenna66/smarterd (GPL-3.0)

Status: code verified, 10 files readable

[373] Code ↔ Paper doi:10.1038/s41598-025-29587-x [paper, repository]

Evaluating EEG-to-text models through noise-based performance analysis

Journal: —

Authors' code: khu-aims/EEG-To-Text (no license)

Status: code verified, 26 files readable, 5 matches