PTEN regulates starburst amacrine cell dendrite morphology during development.

1. #man_pagesdcmd# -*- coding: utf-8 -*-
2. #
3. # Stimulus Program documentation build configuration file, created by
4. # sphinx-quickstart on Thu Feb 04 11:17:06 2016.
5. #
6. # This file is execfile()d with the current directory set to its
7. # containing dir.
8. #
9. # Note that not all possible configuration values are present in this
10. # autogenerated file.
11. #
12. # All configuration values have a default; values that are commented out
13. # serve to show the default.
15. import sys
16. import os
18. # If extensions (or modules to document with autodoc) are in another directory,
19. # add these directories to sys.path here. If the directory is relative to the
20. # documentation root, use os.path.abspath to make it absolute, like shown here.
21. user = os.environ.get('USERNAME')
23. if user == 'Alex':
24. sys.path.insert(0, os.path.abspath(r'C:\Users\Alex\Anaconda3\envs\stimprogram\Lib\site-packages'))
25. elif user == 'bensivyer':
26. sys.path.insert(0, os.path.abspath(r'C:\Users\bensivyer\Anaconda3\envs\sp_env\Lib\site-packages'))
28. sys.path.insert(0, os.path.abspath(r'../../pyStim'))
30. # -- General configuration ------------------------------------------------
32. # If your documentation needs a minimal Sphinx version, state it here.
33. #needs_sphinx = '1.0'
35. # Add any Sphinx extension module names here, as strings. They can be
36. # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
37. # ones.
38. extensions = [
39. 'sphinx.ext.githubpages',
40. 'sphinx.ext.autodoc',
41. 'sphinx.ext.intersphinx',
42. # 'sphinx.ext.mathjax',
43. 'sphinx.ext.viewcode',
44. # 'rst2pdf.pdfbuilder' # add rst2pdf to pipfile if want to try building PDFs
45. ]
47. # Add any paths that contain templates here, relative to this directory.
48. templates_path = ['_templates']
50. # The suffix(es) of source filenames.
51. # You can specify multiple suffix as a list of string:
52. # source_suffix = ['.rst', '.md']
53. source_suffix = '.rst'
55. # The encoding of source files.
56. #source_encoding = 'utf-8-sig'
58. # The master toctree document.
59. master_doc = 'index'
61. # General information about the project.
62. project = u'pyStim'
63. copyright = u'2017, Alexander Tomlinson'
64. author = u'Alexander Tomlinson'
66. # The version info for the project you're documenting, acts as replacement for
67. # |version| and |release|, also used in various other places throughout the
68. # built documents.
69. #
70. # The short X.Y version.
71. version = u'1.1'
72. # The full version, including alpha/beta/rc tags.
73. release = u'1.1'
75. # The language for content autogenerated by Sphinx. Refer to documentation
76. # for a list of supported languages.
77. #
78. # This is also used if you do content translation via gettext catalogs.
79. # Usually you set "language" from the command line for these cases.
80. language = None
82. # There are two options for replacing |today|: either, you set today to some
83. # non-false value, then it is used:
84. #today = ''
85. # Else, today_fmt is used as the format for a strftime call.
86. #today_fmt = '%B %d, %Y'
88. # List of patterns, relative to source directory, that match files and
89. # directories to ignore when looking for source files.
90. exclude_patterns = []
92. # The reST default role (used for this markup: `text`) to use for all
93. # documents.
94. #default_role = None
96. # If true, '()' will be appended to :func: etc. cross-reference text.
97. #add_function_parentheses = True
99. # If true, the current module name will be prepended to all description
100. # unit titles (such as .. function::).
101. #add_module_names = True
103. # If true, sectionauthor and moduleauthor directives will be shown in the
104. # output. They are ignored by default.
105. #show_authors = False
107. # The name of the Pygments (syntax highlighting) style to use.
108. pygments_style = 'sphinx'
110. # A list of ignored prefixes for module index sorting.
111. #modindex_common_prefix = []
113. # If true, keep warnings as "system message" paragraphs in the built documents.
114. #keep_warnings = False
116. # If true, `todo` and `todoList` produce output, else they produce nothing.
117. todo_include_todos = False
120. # -- Options for HTML output ----------------------------------------------
122. # The theme to use for HTML and HTML Help pages. See the documentation for
123. # a list of builtin themes.
124. html_theme = 'sphinxdoc'
126. # Theme options are theme-specific and customize the look and feel of a theme
127. # further. For a list of options available for each theme, see the
128. # documentation.
129. #html_theme_options = {}
131. # Add any paths that contain custom themes here, relative to this directory.
132. #html_theme_path = []
134. # The name for this set of Sphinx documents. If None, it defaults to
135. # "<project> v<release> documentation".
136. #html_title = None
138. # A shorter title for the navigation bar. Default is the same as html_title.
139. #html_short_title = None
141. # The name of an image file (relative to this directory) to place at the top
142. # of the sidebar.
143. #html_logo = None
145. # The name of an image file (within the static path) to use as favicon of the
146. # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
147. # pixels large.
148. #html_favicon = None
150. # Add any paths that contain custom static files (such as style sheets) here,
151. # relative to this directory. They are copied after the builtin static files,
152. # so a file named "default.css" will overwrite the builtin "default.css".
153. # html_static_path = ['_static']
155. # Add any extra paths that contain custom files (such as robots.txt or
156. # .htaccess) here, relative to this directory. These files are copied
157. # directly to the root of the documentation.
158. #html_extra_path = []
160. # If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
161. # using the given strftime format.
162. #html_last_updated_fmt = '%b %d, %Y'
164. # If true, SmartyPants will be used to convert quotes and dashes to
165. # typographically correct entities.
166. #html_use_smartypants = True
168. # Custom sidebar templates, maps document names to template names.
169. #html_sidebars = {}
171. # Additional templates that should be rendered to pages, maps page names to
172. # template names.
173. #html_additional_pages = {}
175. # If false, no module index is generated.
176. #html_domain_indices = True
178. # If false, no index is generated.
179. #html_use_index = True
181. # If true, the index is split into individual pages for each letter.
182. #html_split_index = False
184. # If true, links to the reST sources are added to the pages.
185. #html_show_sourcelink = True
187. # If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
188. #html_show_sphinx = True
190. # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
191. #html_show_copyright = True
193. # If true, an OpenSearch description file will be output, and all pages will
194. # contain a <link> tag referring to it. The value of this option must be the
195. # base URL from which the finished HTML is served.
196. #html_use_opensearch = ''
198. # This is the file name suffix for HTML files (e.g. ".xhtml").
199. #html_file_suffix = None
201. # Language to be used for generating the HTML full-text search index.
202. # Sphinx supports the following languages:
203. # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
204. # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr'
205. #html_search_language = 'en'
207. # A dictionary with options for the search language support, empty by default.
208. # Now only 'ja' uses this config value
209. #html_search_options = {'type': 'default'}
211. # The name of a javascript file (relative to the configuration directory) that
212. # implements a search results scorer. If empty, the default will be used.
213. #html_search_scorer = 'scorer.js'
215. # Output file base name for HTML help builder.
216. htmlhelp_basename = 'pyStimdoc'
218. # -- Options for LaTeX output ---------------------------------------------
220. latex_elements = {
221. # The paper size ('letterpaper' or 'a4paper').
222. #'papersize': 'letterpaper',
224. # The font size ('10pt', '11pt' or '12pt').
225. #'pointsize': '10pt',
227. # Additional stuff for the LaTeX preamble.
228. #'preamble': '',
230. # Latex figure (float) alignment
231. #'figure_align': 'htbp',
232. }
234. # Grouping the document tree into LaTeX files. List of tuples
235. # (source start file, target name, title,
236. # author, documentclass [howto, manual, or own class]).
237. latex_documents = [
238. (master_doc, 'pyStim.tex', u'pyStim Documentation',
239. u'Alexander Tomlinson', 'manual'),
240. ]
242. # The name of an image file (relative to this directory) to place at the top of
243. # the title page.
244. #latex_logo = None
246. # For "manual" documents, if this is true, then toplevel headings are parts,
247. # not chapters.
248. #latex_use_parts = False
250. # If true, show page references after internal links.
251. #latex_show_pagerefs = False
253. # If true, show URL addresses after external links.
254. # latex_show_urls = True
256. # Documents to append as an appendix to all manuals.
257. #latex_appendices = []
259. # If false, no module index is generated.
260. #latex_domain_indices = True
263. # -- Options for manual page output ---------------------------------------
265. # One entry per manual page. List of tuples
266. # (source start file, name, description, authors, manual section).
267. man_pages = [
268. (master_doc, 'pyStim', u'pyStim Documentation',
269. [author], 1)
270. ]
272. # If true, show URL addresses after external links.
273. #man_show_urls = False
276. # -- Options for Texinfo output -------------------------------------------
278. # Grouping the document tree into Texinfo files. List of tuples
279. # (source start file, target name, title, author,
280. # dir menu entry, description, category)
281. texinfo_documents = [
282. (master_doc, 'pyStim', u'pyStim Documentation',
283. author, 'pyStim', 'Software to generate visual stimuli for use in visual neuroscience experiments.',
284. 'Miscellaneous'),
285. ]
287. # Documents to append as an appendix to all manuals.
288. #texinfo_appendices = []
290. # If false, no module index is generated.
291. #texinfo_domain_indices = True
293. # How to display URL addresses: 'footnote', 'no', or 'inline'.
294. #texinfo_show_urls = 'footnote'
296. # If true, do not generate a @detailmenu in the "Top" node's menu.
297. #texinfo_no_detailmenu = False
300. # Example configuration for intersphinx: refer to the Python standard library.
301. intersphinx_mapping = {'https://docs.python.org/': None}
304. # -----------------
306. autodoc_member_order = 'bysource'
308. # -- Options for PDF output --------------------------------------------------
309. # Grouping the document tree into PDF files. List of tuples
310. # (source start file, target name, title, author, options).
311. #
312. # If there is more than one author, separate them with \\.
313. # For example: r'Guido van Rossum\\Fred L. Drake, Jr., editor'
314. #
315. # The options element is a dictionary that lets you override
316. # this config per-document.
317. # For example,
318. # ('index', u'MyProject', u'My Project', u'Author Name',
319. # dict(pdf_compressed = True))
320. # would mean that specific document would be compressed
321. # regardless of the global pdf_compressed setting.
322. pdf_documents = [
323. ('index', u'MyProject', u'pyStim', u'Alexander Tomlinson'),
324. ]
325. # A comma-separated list of custom stylesheets. Example:
326. pdf_stylesheets = ['sphinx', 'kerning', 'a4']
328. # A list of folders to search for stylesheets. Example:
329. pdf_style_path = ['.', '_styles']
331. # Create a compressed PDF
332. # Use True/False or 1/0
333. # Example: compressed=True
334. #pdf_compressed = False
336. # A colon-separated list of folders to search for fonts. Example:
337. # pdf_font_path = [r'C:\Windows\Fonts']
339. # Language to be used for hyphenation support
340. #pdf_language = "en_US"
342. # Mode for literal blocks wider than the frame. Can be
343. # overflow, shrink or truncate
344. #pdf_fit_mode = "shrink"
346. # Section level that forces a break page.
347. # For example: 1 means top-level sections start in a new page
348. # 0 means disabled
349. #pdf_break_level = 0
351. # When a section starts in a new page, force it to be 'even', 'odd',
352. # or just use 'any'
353. #pdf_breakside = 'any'
355. # Insert footnotes where they are defined instead of
356. # at the end.
357. #pdf_inline_footnotes = True
359. # verbosity level. 0 1 or 2
360. pdf_verbosity = 1
362. # If false, no index is generated.
363. pdf_use_index = False
365. # If false, no modindex is generated.
366. #pdf_use_modindex = True
368. # If false, no coverpage is generated.
369. #pdf_use_coverpage = True
371. # Name of the cover page template to use
372. #pdf_cover_template = 'sphinxcover.tmpl'
374. # Documents to append as an appendix to all manuals.
375. #pdf_appendices = []
377. # Enable experimental feature to split table cells. Use it
378. # if you get "DelayedTable too big" errors
379. #pdf_splittables = False
381. # Set the default DPI for images
382. #pdf_default_dpi = 72
384. # Enable rst2pdf extension modules (default is only vectorpdf)
385. # you need vectorpdf if you want to use sphinx's graphviz support
386. #pdf_extensions = ['vectorpdf']
388. # Page template name for "regular" pages
389. #pdf_page_template = 'cutePage'
391. # Show Table Of Contents at the beginning?
392. #pdf_use_toc = True
394. # How many levels deep should the table of contents be?
395. pdf_toc_depth = 2
397. # Add section number to section references
398. pdf_use_numbered_links = False
400. # Background images fitting mode
401. pdf_fit_background_mode = 'scale'

conf.py at commit 217add1, under GPL-3.0 · at the source