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A conserved Arf-GEF modulates axonal integrity through RAB-35 by altering neuron-epidermal attachment.

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Paper

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The authors' code

Python · 1 line · 0 B · other-open

__init__.py, under other-open · at the source

Overview

Authors: Igor Bonacossa-Pereira1, Dat Le2, Sean Coakley2, Massimo A. Hilliard1
  1. Clem Jones Centre for Ageing Dementia Research, Queensland Brain Institute, Faculty of Health, Medicine and Behavioural Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia
  2. School of Biomedical Sciences, Faculty of Health, Medicine and Behavioural Sciences, The University of Queensland, Brisbane, Queensland, 4072, Australia
Institutions: The University of Queensland (Australia)
Journal: Journal of cell science, volume 139, issue 13, article jcs264565
Dates: received 5 November 2025; accepted 5 June 2026; published online 13 July 2026; in print July 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1242/jcs.264565 · PMID 42312793 · PMCID PMC13405217 · OpenAlex W4411116152
Open access: hybrid, a free copy (OpenAlex)
Status: code verified
Categories: human (organism), C. elegans (organism), cellular / molecular (subfield)
Methods: Statistics, Evoked potentials, fMRI & imaging
Keywords: AGEF-1, ARFGEF2, RAB-35, Axonal integrity, Spectrin, Attachment
MeSH: Axons*, Caenorhabditis elegans*, Caenorhabditis elegans Proteins*, Epidermis*, Guanine Nucleotide Exchange Factors*, rab GTP-Binding Proteins*, Animals, Humans, Neurons, Sensory Receptor Cells (* major topic)
Topic: Nerve injury and regeneration (Cellular and Molecular Neuroscience, Neuroscience), according to OpenAlex
Funding: National Health and Medical Research Council (APP1108489, GNT2010532, APP1197860); Department of Education and Training | Australian Research Council (ARC) (APP1108489, APP1129546, GNT2010532, LE130100078); Alastair Rushworth Research Fund; University of Queensland
Citations: not cited yet (Europe PMC); 55 references in the paper

Abstract

Neurites of sensory neurons innervate the skin and are embedded within it. These delicate structures are chronically exposed to mechanical strain and yet their integrity is maintained throughout life. In C. elegans, UNC-70 (a β-spectrin protein) functions in synergy with the small GTPase RAB-35 within the skin to stabilize neuron–epidermal attachment against mechanical strain and prevent movement-induced damage to mechanosensitive axons. However, the molecular pathway regulating these specialized attachments remains elusive. Here, through an unbiased genetic screen, we have identified a guanine nucleotide exchange factor (GEF), AGEF-1, that impacts axonal maintenance. This molecule is known to function in endocytic recycling and its human ortholog, BIG2 (also known as ARFGEF2), is associated with the development of the periventricular nodular heterotopia. We show that AGEF-1 functions selectively within the skin to regulate axonal integrity of mechanosensitive neurons. Mechanistically, we reveal that AGEF-1 binds to epidermal RAB-35 and regulates its activity, modulating neuron–epidermal attachment stability. Finally, we demonstrate that this GEF is highly conserved, with its human ortholog BIG2 being capable of replacing AGEF-1. Together, we reveal the molecular machinery responsible for fine-tuning neuron–epidermal attachments and maintaining axonal integrity during life.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repositories

Its files are read in the Code ↔ Paper reader above.

Zenodo 6031709

License: other-open
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Size: 1 file
Software Heritage: not checked
Found in: the text, “Image analysis and panel preparation”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: NumPy (1 file), pandas (1 file)
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
  • 27 September 2026: the link answers (HTTP 200)
8 files

igorbonap/signal-probability-along-line

License: GPL-3.0
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Commit: 65e8a5fa00026476a5077d63fee69c191b3ebd9f, 10 February 2022
Languages: Python (6)
Size: 8 files, 6 scripts
Software Heritage: not archived
Found in: the Zenodo archive record
Holds: README, license file
Not found: CITATION.cff, environment file, tests, continuous integration, documentation
Tools: NumPy (1 file), pandas (1 file)
Availability: 1 check, the latest on 27 September 2026: the link answers
  • 27 September 2026: the link answers
8 files

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 2 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 12 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
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Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

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Versions

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Version 2, 28 September 2026

  • Publisher: — → The Company of Biologists

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 4 authors, 6 keywords, 10 MeSH terms, 4 funders, 55 references.

Cite

This paper

Bonacossa-Pereira, I., Le, D., Coakley, S., & Hilliard, M. A. (2026). A conserved Arf-GEF modulates axonal integrity through RAB-35 by altering neuron-epidermal attachment. Journal of cell science, 139(13), jcs264565. https://doi.org/10.1242/jcs.264565

BibTeX

@article{bonacossapereira2026conserved,
author = {Bonacossa-Pereira, Igor and Le, Dat and Coakley, Sean and Hilliard, Massimo A.},
title = {{A conserved Arf-GEF modulates axonal integrity through RAB-35 by altering neuron-epidermal attachment}},
journal = {Journal of cell science},
year = {2026},
month = jul,
volume = {139},
number = {13},
pages = {jcs264565},
publisher = {The Company of Biologists},
issn = {0021-9533},
doi = {10.1242/jcs.264565},
url = {https://doi.org/10.1242/jcs.264565},
pmid = {42312793},
pmcid = {PMC13405217}
}

RIS

TY - JOUR
AU - Bonacossa-Pereira, Igor
AU - Le, Dat
AU - Coakley, Sean
AU - Hilliard, Massimo A.
TI - A conserved Arf-GEF modulates axonal integrity through RAB-35 by altering neuron-epidermal attachment
T2 - Journal of cell science
J2 - J Cell Sci
PY - 2026
DA - 2026/07/13
VL - 139
IS - 13
SP - jcs264565
SN - 0021-9533
PB - The Company of Biologists
DO - 10.1242/jcs.264565
UR - https://doi.org/10.1242/jcs.264565
LA - en
ER -

CSL-JSON

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