OSCR

A guide to the BRAIN Initiative Cell Census Network data ecosystem.

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Code

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biccn.org

License: none: the authors keep all their rights
State: the link answers

obophenotype/brain_data_standards_ontologies

License: Apache-2.0
State: the link answers
Copies: kept by the registry: this license allows it
Tools found in the code: Matplotlib, NetworkX, pandas

Overview

Authors: Michael Hawrylycz, Maryann E Martone, Giorgio A Ascoli, Jan G Bjaalie, Hong-Wei Dong, Satrajit S Ghosh, Jesse Gillis, Ronna Hertzano, David R Haynor, Patrick R Hof, Yongsoo Kim, Ed Lein, Yufeng Liu, Jeremy A Miller, Partha P Mitra, Eran Mukamel, Lydia Ng, David Osumi-Sutherland, Hanchuan Peng, Patrick L Ray
and 83 other authorsRaymond Sanchez, Aviv Regev, Alex Ropelewski, Richard H Scheuermann, Shawn Zheng Kai Tan, Carol L Thompson, Timothy Tickle, Hagen Tilgner, Merina Varghese, Brock Wester, Owen White, Hongkui Zeng, Brian Aevermann, David Allemang, Seth Ament, Thomas L Athey, Cody Baker, Katherine S Baker, Pamela M Baker, Anita Bandrowski, Samik Banerjee, Prajal Bishwakarma, Ambrose Carr, Min Chen, Roni Choudhury, Jonah Cool, Heather Creasy, Florence D’Orazi, Kylee Degatano, Benjamin Dichter, Song-Lin Ding, Tim Dolbeare, Joseph R Ecker, Rongxin Fang, Jean-Christophe Fillion-Robin, Timothy P Fliss, James Gee, Tom Gillespie, Nathan Gouwens, Guo-Qiang Zhang, Yaroslav O Halchenko, Nomi L Harris, Brian R Herb, Houri Hintiryan, Gregory Hood, Sam Horvath, Bingxing Huo, Dorota Jarecka, Shengdian Jiang, Farzaneh Khajouei, Elizabeth A Kiernan, Huseyin Kir, Lauren Kruse, Changkyu Lee, Boudewijn Lelieveldt, Yang Li, Hanqing Liu, Lijuan Liu, Anup Markuhar, James Mathews, Kaylee L Mathews, Chris Mezias, Michael I Miller, Tyler Mollenkopf, Shoaib Mufti, Christopher J Mungall, Joshua Orvis, Maja A Puchades, Lei Qu, Joseph P Receveur, Bing Ren, Nathan Sjoquist, Brian Staats, Daniel Tward, Cindy T J van Velthoven, Quanxin Wang, Fangming Xie, Hua Xu, Zizhen Yao, Zhixi Yun, Yun Renee Zhang, W Jim Zheng, Brian Zingg
Journal: PLoS biology
Published: 30 June 2023
Type: Other
Status: code verified (how the code is found and verified)
DOI: 10.1371/journal.pbio.3002133
License: CC BY
Institutions: Allen Institute for Brain Science (United States), San Francisco VA Medical Center (United States), University of California San Diego (United States), George Mason University (United States), University of Oslo (Norway), University of California, Los Angeles (United States), McGovern Institute for Brain Research (United States), Massachusetts Institute of Technology (United States), University of Toronto (Canada), University of Maryland, Baltimore (United States), University of Washington (United States), Icahn School of Medicine at Mount Sinai (United States), Pennsylvania State University (United States), Southeast University (China), Cold Spring Harbor Laboratory (United States), European Bioinformatics Institute (United Kingdom), Wellcome Trust (United Kingdom), Genentech (United States), Pittsburgh Supercomputing Center (United States), Carnegie Mellon University (United States), J. Craig Venter Institute (United States), Broad Institute (United States), Weill Cornell Medicine (United States), Johns Hopkins University (United States), Johns Hopkins University Applied Physics Laboratory (United States), Chan Zuckerberg Initiative (United States) (United States), Kitware (United States) (United States), CatalystNeuro (United States), University of Pennsylvania (United States), Salk Institute for Biological Studies (United States), Howard Hughes Medical Institute (United States), The University of Texas Health Science Center at Houston (United States), Dartmouth College (United States), Lawrence Berkeley National Laboratory (United States), Leiden University Medical Center (Netherlands), Delft University of Technology (Netherlands), Ludwig Cancer Research (Belgium), Ludwig Cancer Research (United States), Microsoft (United States) (United States)
Categories: human (organism), mouse (organism), cellular / molecular (subfield)

Data

Datasets cited

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Markdown
<!-- oscr-badge:start -->
[![OSCR](https://openscicode.org/badge/doi/10.1371/journal.pbio.3002133.svg)](https://openscicode.org/badge/doi/10.1371/journal.pbio.3002133)
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reStructuredText
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.. image:: https://openscicode.org/badge/doi/10.1371/journal.pbio.3002133.svg
   :target: https://openscicode.org/badge/doi/10.1371/journal.pbio.3002133
   :alt: OSCR

.. oscr-badge:end
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<!-- oscr-badge:start -->
<a href="https://openscicode.org/badge/doi/10.1371/journal.pbio.3002133"><img src="https://openscicode.org/badge/doi/10.1371/journal.pbio.3002133.svg" alt="OSCR"></a>
<!-- oscr-badge:end -->

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