The anti-neural role of BMP signaling is a consequence of its ancestral function in dorsoventral patterning.
The 2 matches · 1 of them tie a paragraph to a whole file, not to given lines: a weak match, whose lines are not tinted
- [1] § Materials and methods › Inhibitor treatments, bulk RNA-seq, de novo transcriptome assembly and differential gene expression analysis in Stomolophus ↔ deseq.R, the whole file · a weak match · score 0.60 · DESeq2, Kallisto, importing, tximport, Trinity, transcriptomes
- [2] § Materials and methods › Single-cell RNA-seq analysis ↔ scRNA-seqDotplots_Fig2_FigS4.R, lines 100–175 · score 0.57 · DotPlot, ID.separate, SEM, SD, subset, raw
Paper
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The authors' code
R · 45 lines · 1.9 KB · no license · 1 match
deseq.R at commit 1b6c738, no license · at the source
Overview
- Department of Neurosciences and Developmental Biology, University of Vienna, Vienna, Austria
- Vienna Doctoral School of Ecology and Evolution (VDSEE), University of Vienna, Vienna, Austria
- Konrad Lorenz Institute for Evolution and Cognition Research, Klosterneuburg, Austria
- Department of Evolutionary Biology, University of Vienna, Vienna, Austria
- Haus des Meeres, Vienna, Austria
- Tiergarten Schönbrunn, Vienna, Austria
Abstract
In Bilateria with centralized nervous systems (e.g., in vertebrates or arthropods), the minimum of the BMP signaling activity gradient defines the position of the central nervous system. BMP-dependent patterning of the secondary body axis is ancestral for Bilateria and possibly also for the bilaterian sister clade Cnidaria. However, the variety of levels of centralization of the nervous systems in Bilateria—from diffuse to fully centralized—as well as the lack of centralization of the nervous system in Cnidaria, suggest that BMP signaling cannot be perceived as a universally “anti-neural” signal. Here we use transgenic reporter lines in the anthozoan cnidarian Nematostella to show that BMP signaling is active in distinct neuronal populations. Moreover, attenuation of BMP signaling followed by RNA-Seq shows that BMP signaling is a positive regulator of many neuronal genes, including the top-tier neural progenitor marker soxB(2). Furthermore, we analyze BMP signaling activity in the cubozoan jellyfish Tripedalia and the scyphozoan jellyfish Stomolophus and prove that BMP signaling in parts of the diffuse nervous system is not an anthozoan but an ancestral cnidarian feature, shared by anthozoans and medusozoans. Finally, we show that the highly centralized ventral nervous system of the nonmodel spiralian, the chaetognath Spadella, forms out of paired BMP signaling-positive domains on the lateral sides of the embryo. Together, our data suggest that one of the ancestral roles of BMP signaling may have been in promoting neurogenesis. We propose that the “anti-neural” function of BMP signaling in vertebrates and arthropods is a consequence of its global role in the dorsoventral patterning of the ectoderm.
Reproduced under the paper's license (CC BY), from the paper cited above.
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Zenodo 19686897
Availability: 1 check, the latest on 28 September 2026: the link answers (HTTP 200)
- 28 September 2026: the link answers (HTTP 200)
3 files
- scRNA-SeqDotPlots_S1_Plo
t-S4_Plot.R — R, 153 lines - scRNA-seqDotplots_Fig2_F
igS4.R — R, 175 lines - README.md — Text, 5 lines
genikhovich-lab/data-for-plots
1a38a5fdedd679c10bafb980d6b3cbb9f2869617, 21 April 2026Availability: 1 check, the latest on 28 September 2026: the link answers
- 28 September 2026: the link answers
3 files, not copied: shown from their source
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igS4.R — R, 175 lines, 1 match, shown from its source - README.md — Text, 5 lines, shown from its source
Genikhovich-Lab/Stomolophus
1b6c738bb0cc0d94f066edaa41c09a8003f94dfb, 25 March 2026Availability: 1 check, the latest on 28 September 2026: the link answers
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Zenodo 19686882
Availability: 1 check, the latest on 28 September 2026: the link answers (HTTP 200)
- 28 September 2026: the link answers (HTTP 200)
Genikhovich-Lab
Availability: 1 check, the latest on 28 September 2026: the link answers (HTTP 200)
- 28 September 2026: the link answers (HTTP 200)
The paper's code and data availability statement is in the Data section.
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Data
Datasets cited
- bioproject:PRJNA1269470 — at NCBI BioProject; found in “Data Availability”
Other data links
- ncbi.nlm.nih.gov/
bioproject/ — NCBI; found in “Data Availability”1441074
Data Availability
Newly generated sequencing data is deposited as bioprojects at https://
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Version 2, 28 September 2026
- Funding: added Österreichischen Akademie der Wissenschaften; Austrian Science Fund: P 34665, P32705, PAT2395824; Universität Wien; Universitetet i Bergen; Lomonosov Moscow State University
Version 1, 28 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 8 authors, 10 MeSH terms, 105 references.
Cite
This paper
Knabl, P., Ordoñez, J. F., Montenegro Cabrera, J. D., Abed-Navandi, D., Halbauer, R., Link, O., Wollesen, T., & Genikhovich, G. (2026). The anti-neural role of BMP signaling is a consequence of its ancestral function in dorsoventral patterning. PLoS biology, 24(5), e3003803. https://
BibTeX
@article{knabl2026anti,
author = {Knabl, Paul and Ordoñez, June F and Montenegro Cabrera, Juan Daniel and Abed-Navandi, Daniel and Halbauer, Roland and Link, Oliver and Wollesen, Tim and Genikhovich, Grigory},
title = {{The anti-neural role of BMP signaling is a consequence of its ancestral function in dorsoventral patterning}},
journal = {PLoS biology},
year = {2026},
month = may,
volume = {24},
number = {5},
pages = {e3003803},
publisher = {PLOS},
issn = {1544-9173},
doi = {10.1371/
url = {https://
pmid = {42166538},
pmcid = {PMC13193452}
}
RIS
TY - JOUR
AU - Knabl, Paul
AU - Ordoñez, June F
AU - Montenegro Cabrera, Juan Daniel
AU - Abed-Navandi, Daniel
AU - Halbauer, Roland
AU - Link, Oliver
AU - Wollesen, Tim
AU - Genikhovich, Grigory
TI - The anti-neural role of BMP signaling is a consequence of its ancestral function in dorsoventral patterning
T2 - PLoS biology
J2 - PLoS Biol
PY - 2026
DA - 2026/
VL - 24
IS - 5
SP - e3003803
SN - 1544-9173
PB - PLOS
DO - 10.1371/
UR - https://
LA - en
ER -
CSL-JSON
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