other

Organism: 135 papers with a page, 77 of them with their authors' code.

Monday, 21 September 2026 (1 paper)

[1] doi:10.1186/s12915-026-02717-1 [paper, data]

Odorant receptor structures predict the major female sex pheromone component in a moth.

Journal: BMC biology

Status: data only, 1 dataset cited

Monday, 14 September 2026 (1 paper)

[2] doi:10.1038/s42003-026-10802-y [paper]

Transcriptome of fetal cortex of tree shrew underlying the emergence of outer subventricular zone.

Journal: Communications biology

Status: code on request

Saturday, 12 September 2026 (1 paper)

[3] doi:10.1080/01652176.2026.2720640 [paper, data]

Evaluation of a 0.05 T low-field MRI system for canine brain imaging via comparison with images acquired at 1.5 T field strength: a pilot cadaver study.

Journal: The veterinary quarterly

Status: data only, 2 datasets cited

Friday, 4 September 2026 (1 paper)

[4] doi:10.1016/j.isci.2026.117282 [paper]

Linalool enables reversible immobilization for high-resolution <i>in vivo</i> imaging during regeneration in <i>Schmidtea mediterranea</i>.

Journal: iScience

Status: code on request

Wednesday, 2 September 2026 (1 paper)

[5] Code ↔ Paper doi:10.1038/s41467-026-76569-2 [paper, repository]

Self-organization of vascularized muscle from bovine embryonic stem cells.

Journal: Nature communications

Authors' code: YuyaSanaki/NMJ-analysis (Apache-2.0), git.embl.de/grp-mif/image-analysis (no license), LRpz/VascuMap (CC-BY-NC-4.0)

Status: code verified, 20 files readable, 4 matches

Tuesday, 1 September 2026 (2 papers)

[6] doi:10.1096/fj.202603109r [paper, data]

Stressor- and Tissue-Specific Regulation of the Corticotropin-Releasing Factor System Across Epithelial Tissues in Rainbow Trout.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[7] Code ↔ Paper doi:10.1093/gbe/evag222 [paper, repository]

Genomic Signatures of Selection Are Enriched in Differentially Expressed Genes in Sticklebacks Adapting to Contrasting Environments.

Journal: Genome biology and evolution

Authors' code: z0on/tag-based_RNAseq (no license)

Status: code verified, 30 files readable

Saturday, 29 August 2026 (1 paper)

[8] Code ↔ Paper doi:10.1016/j.isci.2026.117375 [paper, repository]

Motor priming is associated with widespread recruitment into neural ensembles and more rapid ensemble transitions.

Journal: iScience

Authors' code: Zenodo 21875573 (CC-BY-4.0), Byrne-Lab/tca_egestive_priming_2025 (no license), Byrne-Lab/VSD_CFE_analysis (no license)

Status: code verified, 88 files readable, 15 matches

Thursday, 27 August 2026 (1 paper)

[9] Code ↔ Paper doi:10.1371/journal.pbio.3003955 [paper, repository]

Beat- and Side-family cell-surface molecules are expressed combinatorially in the partner neurons of the olfactory circuit in Drosophila.

Journal: PLoS biology

Authors' code: volkanlab/beats_sides_olfactory_circuit_Drosophila_Duan_PlosBio2026 (MIT), Zenodo 21652764 (CC-BY-4.0)

Status: code verified, 18 files readable, 9 matches

Wednesday, 26 August 2026 (1 paper)

[10] doi:10.1371/journal.pone.0356781 [paper, data]

Bovine serum albumin sensitizes the mouse brain to lipopolysaccharides.

Journal: PloS one

Status: data only, 4 datasets cited

Monday, 24 August 2026 (1 paper)

[11] Code ↔ Paper doi:10.1523/eneuro.0121-26.2026 [paper, repository]

Hippocampal Gene Expression in Zebra Finches Reveals Sex- and Subregion-Specific Topographies.

Journal: eNeuro

Authors' code: ATayl4908/ZB-DGE-analysis (no license)

Status: dead link

Saturday, 22 August 2026 (1 paper)

[12] doi:10.3390/cells15171512 [paper, data]

Asymmetric Functional Divergence of <i>alx4a</i> and <i>alx4b</i> in Iridophore Differentiation and Cranial Development in Nile Tilapia.

Journal: Cells

Status: data only, 1 dataset cited

Friday, 21 August 2026 (1 paper)

[13] doi:10.7554/elife.110936 [paper, data]

Crickets evade bats via olfaction beyond acoustic cues.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 19 August 2026 (1 paper)

[14] Code ↔ Paper doi:10.3390/brainsci16080882 [paper, repository]

How Long Is the Brain Perfusable After Global Ischemia? A Systematic Review.

Journal: Brain sciences

Authors' code: andymckenzie/Ischemic_perfusion_review (no license)

Status: code verified, 2 files readable, 6 matches

Tuesday, 18 August 2026 (1 paper)

[15] Code ↔ Paper doi:10.1016/j.isci.2026.117136 [paper, repository]

Complex pectoral-fin-driven locomotion underlies refined visuomotor behavior in the cichlid <i>Astatotilapia burtoni</i>.

Journal: iScience

Authors' code: Zenodo 21463359 (MIT), ncguilbeault/cichlid_omr_analysis (MIT)

Status: code verified, 66 files readable, 3 matches

Sunday, 16 August 2026 (1 paper)

[16] Code ↔ Paper doi:10.1186/s12711-026-01078-1 [paper, repository]

Functional genomic dissection and prediction of body size traits in pigs.

Journal: Genetics, selection, evolution : GSE

Authors' code: susjoh/wildsim (no license)

Status: code verified, 23 files readable

Saturday, 15 August 2026 (2 papers)

[17] Code ↔ Paper doi:10.1007/s12021-026-09810-4 [paper, repository]

Meta-Analysis of Face-Validity Indicators in Automatically Detected Dog Sleep Spindles.

Journal: Neuroinformatics

Authors' code: IvoWolf1987/spindle_hound (no license)

Status: code verified, 1 file readable, 1 match

[18] Code ↔ Paper doi:10.1038/s41467-026-76682-2 [paper, repository]

Odorant receptor coexpression and multi-expression in the dengue mosquito.

Journal: Nature communications

Authors' code: mcbridelab/Adavi_2024_snRNAseqAaegAntennae (no license)

Status: code verified, 6 files readable, 16 matches

Friday, 14 August 2026 (1 paper)

[19] doi:10.3390/biom16081187 [paper, data]

Genetic Diversity and Runs of Homozygosity in Three Masu Salmon (<i>Oncorhynchus masou</i>) Populations Based on Whole-Genome Resequencing Data.

Journal: Biomolecules

Status: data only, 1 dataset cited

Tuesday, 11 August 2026 (2 papers)

[20] doi:10.1523/eneuro.0199-25.2026 [paper]

Zebra Finch Introductory Notes Become Song-Like But Have Different Timing and Acoustic Correlations with the Song That Follows.

Journal: eNeuro

Status: code on request

[21] Code ↔ Paper doi:10.3390/ani16162494 [paper, repository]

Categorical Representation of Numerosity in the Pigeon Entopallium: Coding Format and Temporal Dynamics.

Journal: Animals : an open access journal from MDPI

Authors' code: BrainSystemsLab/Data_and_Code_for_ENTO (no license)

Status: code verified, 11 files readable, 1 match

Monday, 10 August 2026 (2 papers)

[22] doi:10.1080/19336896.2026.2710965 [paper, data]

Epigenetic changes associated with the progression of prion disease in Syrian hamsters (<i>Mesocricetus auratus</i>).

Journal: Prion

Status: data only, 1 dataset cited

[23] Code ↔ Paper doi:10.1016/j.isci.2026.116900 [paper, repository]

Dog brain representations of human facial expressions: Encoding happiness and differentiating specific negative expressions.

Journal: iScience

Authors' code: rhernandez00/dog_brain_toolkit (no license)

Status: code verified, 137 files readable, 5 matches

Friday, 7 August 2026 (1 paper)

[24] Code ↔ Paper doi: [paper, repository]

SOX12 and DELTA mediate ecdysone-driven adult neural cell proliferation during metamorphosis

Journal: The Journal of biological chemistry

Authors' code: BGI-flexlab/SOAPnuke (GPL-3.0)

Status: code verified, 34 files readable, 1 match

Wednesday, 5 August 2026 (1 paper)

[25] Code ↔ Paper doi:10.1016/j.bpr.2026.100280 [paper, repository]

Morphometric analysis reveals that the chick cranial neural tube expands as an active shell.

Journal: Biophysical reports

Authors' code: nchahare/spatchcocking (MIT)

Status: code verified, 23 files readable, 16 matches

Tuesday, 4 August 2026 (1 paper)

[26] doi:10.1016/j.isci.2026.116918 [paper]

Batrachotoxin-sensitive sodium channels in toxic birds challenge "target mutation" strategy of toxin autoresistance.

Journal: iScience

Status: code on request

Monday, 3 August 2026 (1 paper)

[27] Code ↔ Paper doi:10.1016/j.psj.2026.107561 [paper, repository]

Integrated Analysis of SNPs and Structural Variations via High-depth Whole-genome Sequencing Reveals the Genetic Architecture and Optimizes Genomic Prediction in Chickens.

Journal: Poultry science

Authors' code: jasmine/jasmine (MIT), HaoqiangYe/GPDLBP (MIT)

Status: code verified, 292 files readable, 3 matches

Saturday, 1 August 2026 (3 papers)

[28] doi:10.1002/cne.70197 [paper, data]

Anatomical Investigation Reveals a Second Olfactory System in Locusts.

Journal: The Journal of comparative neurology

Status: data only, 1 dataset cited

[29] Code ↔ Paper doi:10.1093/gbe/evag197 [paper, repository]

Molecular Drivers of Mutualistic Association Between Anemone and Anemonefish.

Journal: Genome biology and evolution

Authors' code: sneha100895/Anemone-anemonefish-mutualism-RNA-Seq (GPL-2.0)

Status: code verified, 5 files readable, 4 matches

[30] doi:10.1111/acel.70645 [paper, data]

Unveiling the AcSirt2-FOXO-Mitophagy Axis: Insights Into Mitochondrial Quality Control and Delayed Aging in Apis cerana.

Journal: Aging cell

Status: data only, 1 dataset cited

Wednesday, 29 July 2026 (1 paper)

[31] Code ↔ Paper doi:10.3389/fnbeh.2026.1878769 [paper, repository]

<i>ADAMTS18</i> as a candidate gene linking social stress and depression: a cross-species study in African wild dogs (<i>Lycaon pictus</i>) and humans.

Journal: Frontiers in behavioral neuroscience

Authors' code: ncbi/sra-tools (other)

Status: code verified, 1,652 files readable, 2 matches

Saturday, 25 July 2026 (1 paper)

[32] doi:10.1038/s41598-026-62854-z [paper, data]

House price prediction using a hybrid GRU-MLP based on binary whale optimization algorithm and ant colony optimization for hyperparameter tuning.

Journal: Scientific reports

Status: data only, 1 dataset cited

Friday, 24 July 2026 (1 paper)

[33] doi:10.1186/s12987-026-00840-3 [paper, data]

Spatiotemporal arising of molecular and functional blood-brain barrier properties in the developing Gallus gallus optic tectum.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

Thursday, 23 July 2026 (1 paper)

[34] doi:10.1016/j.isci.2026.116926 [paper]

Organization, neuronal composition, and dynamics of neuronal ensembles in the songbird auditory forebrain.

Journal: iScience

Status: code on request

Wednesday, 22 July 2026 (1 paper)

[35] Code ↔ Paper doi:10.1016/j.isci.2026.116878 [paper, repository]

Species-specific brain transcriptomic responses to clothianidin and sulfoxaflor in pollinators.

Journal: iScience

Authors' code: aswitwicka/species_insecticide_exposure (no license), Zenodo 21206760 (CC-BY-4.0)

Status: code verified, 20 files readable, 7 matches

Tuesday, 21 July 2026 (1 paper)

[36] doi:10.1007/s44297-026-00082-7 [paper]

Functional conservation of IR75q.2 in the recognition of volatile acids and aldehydes in two Spodoptera species.

Journal: Crop health

Status: data only

Monday, 20 July 2026 (1 paper)

[37] Code ↔ Paper doi:10.1038/s41467-026-75273-5 [paper, repository]

Spinal cord regeneration deploys cell-type specific developmental and non-developmental strategies to restore neuron diversity.

Journal: Nature communications

Authors' code: angellswearera/scRNAseq_xenopus_regen_wills (no license), Zenodo 20549290 (CC-BY-4.0)

Status: code verified, 40 files readable, 17 matches

Friday, 17 July 2026 (1 paper)

[38] Code ↔ Paper doi:10.1242/jeb.252086 [paper, repository]

Transcriptional predictors of rescue behaviour in ants.

Journal: The Journal of experimental biology

Authors' code: ljaimesnino/RescueAnts (no license)

Status: code verified, 2 files readable, 10 matches

Thursday, 16 July 2026 (2 papers)

[39] doi:10.1242/bio.062675 [paper, data]

Signalling through RXRβ and its agonist, bexarotene, promotes neuron formation in Xenopus laevis embryos.

Journal: Biology open

Status: data only, 1 dataset cited

[40] Code ↔ Paper doi:10.1371/journal.pone.0333158 [paper, repository]

Alpha-synuclein overexpression reduces neural activity within a basal ganglia vocal nucleus in a zebra finch model.

Journal: PloS one

Authors' code: supp:PMC13374917/pone.0333158.s010.zip (no license)

Status: code verified, 8 files readable, 3 matches

Tuesday, 14 July 2026 (2 papers)

[41] doi:10.1080/01652176.2026.2696026 [paper, data]

Canine brain imaging with a new low-field portable (0.05 T) MRI scanner: a pilot <i>in vivo</i> comparison to conventional 1.5 T.

Journal: The veterinary quarterly

Status: data only, 1 dataset cited

[42] doi:10.1016/j.ebiom.2026.106377 [paper]

Perilymphatic ATP plays a critical role in modulating cochlear function to protect from loud sound induced hearing loss.

Journal: EBioMedicine

Status: code on request

Monday, 13 July 2026 (1 paper)

[43] Code ↔ Paper doi:10.1016/j.isci.2026.116665 [paper, repository]

Exposure to non-nestmate odors changes the odorant receptor profile in <i>Acromyrmex echinatior</i> leaf-cutting ants.

Journal: iScience

Authors' code: supp:PMC13382326/mmc6.zip (no license)

Status: code verified, 1 file readable, 1 match

Friday, 10 July 2026 (1 paper)

[44] Code ↔ Paper doi:10.3390/neurosci7040079 [paper, repository]

Effect of Caffeine on Cell Death, Oxidative Stress, and Microglial Morphology in a Ferret Organotypic Brain Slice Model of Hypoxia-Ischemia.

Journal: NeuroSci

Authors' code: MattM719/NeuroCellCounter (MIT)

Status: code verified, 42 files readable, 3 matches

Thursday, 9 July 2026 (1 paper)

[45] Code ↔ Paper doi:10.1002/jsp2.70200 [paper, repository]

A Porcine Model of Intervertebral Disc Injury Recapitulates Human Discogenic Pain Via Notochordal Cell Loss and Pain-Inducing Nucleus Pulposus Cell Emergence.

Journal: JOR spine

Authors' code: gkaneda/Pig-IVD-Scripts (no license)

Status: code verified, 4 files readable, 2 matches

Wednesday, 8 July 2026 (2 papers)

[46] Code ↔ Paper doi:10.7554/elife.110074 [paper, repository]

Disentangling cephalopod chromatophores motor units with computer vision.

Journal: eLife

Authors' code: gitlab.mpcdf.mpg.de/mpibr/laur/cuttlefish/chromas (BSD-3-Clause)

Status: code verified, 72 files readable, 21 matches

[47] Code ↔ Paper doi:10.1038/s41586-026-10747-6 [paper, repository]

Ancient feeding-related neuropeptides regulate alloparenting in ants.

Journal: Nature

Authors' code: Social-Evolution-and-Behavior/Paul_Kay_Kronauer_2026 (GPL-3.0)

Status: code verified, 8 files readable, 6 matches

Tuesday, 7 July 2026 (1 paper)

[48] doi:10.1016/j.isci.2026.116562 [paper]

Adenylyl cyclase 9: Fundamental change of regulation in vertebrates and gene sub-functionalization after teleost-specific whole-genome duplication.

Journal: iScience

Status: code on request

Monday, 6 July 2026 (1 paper)

[49] Code ↔ Paper doi:10.1073/pnas.2511442123 [paper, repository]

Time-resolved morphological and transcriptomic characterization of early enteric neuron subtype emergence in chick.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: forge.univ-lyon1.fr/melis/castellani_lab (no license)

Status: code verified

Thursday, 2 July 2026 (1 paper)

[50] Code ↔ Paper doi:10.1038/s41467-026-75225-z [paper, repository]

A single-cell atlas of alternative wing development in two hemipteran species.

Journal: Nature communications

Authors' code: wanyizju/Pyap-wing-singlecell-2026 (MIT), Zenodo 19603850 (MIT)

Status: code verified, 12 files readable, 6 matches

Wednesday, 1 July 2026 (5 papers)

[51] Code ↔ Paper doi:10.1523/eneuro.0023-26.2026 [paper, repository]

Real-Time Segmentation and Classification of Birdsong Syllables for Learning Experiments.

Journal: eNeuro

Authors' code: veitlab/moove (MIT), vocalpy/vak (BSD-3-Clause), python-poetry/poetry (MIT)

Status: code verified, 791 files readable, 21 matches

[52] Code ↔ Paper doi:10.1167/iovs.67.8.9 [paper, repository]

Müller Glia-Exclusive CLRN1 Expression Drives Non-Cell-Autonomous Photoreceptor Degeneration in Usher Syndrome Type 3A.

Journal: Investigative ophthalmology & visual science

Authors' code: doyang-um/CLRN1_snRNAseq_10M (MIT)

Status: code verified, 16 files readable, 11 matches

[53] Code ↔ Paper doi:10.1016/j.isci.2026.116324 [paper, repository]

Ecological not social factors explain brain size in cephalopods.

Journal: iScience

Authors' code: kcbasava/ceph-brain-evolution (no license), drepanosaur/ceph-brain-evolution (no license), kcbasava/ceph-brain-evolution.•All (no license), kcbasava/ceph-brain-evolution.•Any (no license)

Status: code verified, 10 files readable, 13 matches

[54] doi:10.1167/iovs.67.8.32 [paper, data]

FLVCR2 Regulation of Intracellular Heme Modulates Vascular Tip/Stalk Specification During Retinal Angiogenesis.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[55] doi:10.1002/cne.70184 [paper, data]

The Neural Distribution of Vasotocin, Oxytocin, Dopamine, and Serotonin in Two Australian Skinks With Contrasting Social Lives.

Journal: The Journal of comparative neurology

Status: data only, 1 dataset cited

Tuesday, 30 June 2026 (1 paper)

[56] Code ↔ Paper doi:10.1038/s42003-026-10402-w [paper, repository]

Temporal orchestration of transcriptional and epigenomic programming underlying maternal embryonic diapause in a cricket model.

Journal: Communications biology

Authors' code: Kataoka-K-Lab/Dnigrofasciatus_EggDiapause (no license)

Status: code verified, 36 files readable, 9 matches

Monday, 29 June 2026 (1 paper)

[57] Code ↔ Paper doi:10.3390/biology15131038 [paper, repository]

Genetic Basis of Divergent Growth and Muscle Development in Purebred and Crossbred Leizhou Black Goats Revealed by Whole-Genome Resequencing.

Journal: Biology

Authors' code: animal.omics.pro/code/index.php (no license)

Status: code verified

Sunday, 28 June 2026 (1 paper)

[58] doi:10.1111/imb.70052 [paper, data]

Genome-wide identification of olfactory receptor and odorant-binding protein gene families and their roles in Heliothine chemosensory evolution.

Journal: Insect molecular biology

Status: data only, 1 dataset cited

Thursday, 25 June 2026 (1 paper)

[59] Code ↔ Paper doi:10.7554/elife.99611 [paper, repository]

Intrinsic properties link a network model to zebra finch song.

Journal: eLife

Authors' code: doi:10.5061/dryad.wdbrv162x (no license)

Status: code verified

Monday, 22 June 2026 (1 paper)

[60] Code ↔ Paper doi:10.1242/bio.062604 [paper, repository]

Cat brains age like humans: translating time shows pet cats live to be natural models for human aging.

Journal: Biology open

Authors' code: supp:PMC13382973/biolopen-15-062604-Dataset1.zip (no license), supp:PMC13382973/biolopen-15-062604-Dataset2.zip (no license), supp:PMC13382973/biolopen-15-062604-Dataset3.zip (no license), supp:PMC13382973/biolopen-15-062604-Dataset4.zip (no license)

Status: code verified, 3 files readable, 5 matches

Thursday, 18 June 2026 (1 paper)

[61] Code ↔ Paper doi:10.1038/s41467-026-74434-w [paper, repository]

The alx gene family confers segmental identity to frontonasal cranial neural crest cells.

Journal: Nature communications

Authors' code: AbiRMM/alx3-alx4-scRNA-seq-Analysis (no license)

Status: code verified, 2 files readable, 3 matches

Wednesday, 17 June 2026 (1 paper)

[62] Code ↔ Paper doi:10.1016/j.isci.2026.116429 [paper, repository]

<i>HMGA2</i> regulates fear and growth: Canine GWAS and functional evidence.

Journal: iScience

Authors' code: genetics-statistics/GEMMA (GPL-3.0), deweylab/RSEM (GPL-3.0), OpenGene/fastp (MIT)

Status: code verified, 505 files readable, 2 matches

Monday, 15 June 2026 (2 papers)

[63] doi:10.1186/s12864-026-12959-6 [paper, data]

Cestode infection is linked to transcriptional shifts in neuropeptide signalling and caste-specific ageing pathways in a social insect.

Journal: BMC genomics

Status: data only, 7 datasets cited

[64] doi:10.1016/j.isci.2026.116352 [paper, data]

Neural correlates of innate preference for upward motion.

Journal: iScience

Status: code on request, 1 dataset cited

Friday, 12 June 2026 (1 paper)

[65] doi:10.3389/fgene.2026.1818975 [paper, data]

Clock-related neuropeptides in <i>Acyrthosiphon pisum</i>.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

Thursday, 11 June 2026 (3 papers)

[66] Code ↔ Paper doi:10.1242/jeb.252287 [paper, repository]

Prenatal acoustic communication triggers adaptive vascular programming in the developing avian brain.

Journal: The Journal of experimental biology

Authors' code: praxsubba/Heat_Call_Reprogramming_Bulk_RNA_Seq (MIT)

Status: code verified, 7 files readable, 14 matches

[67] Code ↔ Paper doi:10.1016/j.crmeth.2026.101481 [paper, repository]

A hybrid micro-ECoG for functionally targeted multi-site and multi-scale investigation.

Journal: Cell reports methods

Authors' code: dataverse.harvard.edu/dataverse/hybridecog (no license), Zenodo 20089744 (CC-BY-4.0)

Status: code verified, 24 files readable, 9 matches

[68] Code ↔ Paper doi:10.1016/j.isci.2026.116320 [paper, repository]

Machine learning-based gait classification and genome-wide association identify a QTL for gait type in Colombian paso horses.

Journal: iScience

Authors' code: JianYang-Lab/GCTA (GPL-3.0), saigegit/SAIGE (GPL-3.0)

Status: code verified, 134 files readable, 4 matches

Wednesday, 10 June 2026 (3 papers)

[69] doi:10.64898/2026.06.08.26355206 [paper, data]

A canary in the mind: A single baseline brain scan predicts adolescent depression and anxiety one year later

Journal: medRxiv (preprint)

Status: data only, 2 datasets cited

[70] Code ↔ Paper doi:10.1038/s41586-026-10629-x [paper, repository]

Whole-genome duplication shaped cell-type evolution in the vertebrate brain.

Journal: Nature

Authors' code: DiracZhu1998/WGD2celltype_evolution (GPL-3.0), fmarletaz/hagfish (no license), linnarsson-lab/adult-human-brain (BSD-2-Clause), figshare 29327111 (GPL 3.0+)

Status: code verified, 209 files readable, 26 matches

[71] doi:10.1016/j.isci.2026.116321 [paper]

Chemogenetic activation of the amygdala core nucleus increases aggression in chickens.

Journal: iScience

Status: code on request

Tuesday, 9 June 2026 (3 papers)

[72] doi:10.1371/journal.pbio.3003798 [paper, data]

Animal acoustic communication has a conserved optimal rhythm within the neural delta range.

Journal: PLoS biology

Status: data only, 1 dataset cited

[73] Code ↔ Paper doi:10.1002/advs.75969 [paper, repository]

Accurately Deciphering Tissue Heterogeneity From Spatial Multi-Modal and Multi-Omics With STransformer.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: xingyili/STransformer (no license)

Status: code verified, 18 files readable, 9 matches

[74] doi:10.1038/s41467-026-73852-0 [paper, data]

LRP4 is an entry receptor for multiple encephalitic alphaviruses.

Journal: Nature communications

Status: data only, 1 dataset cited

Friday, 5 June 2026 (1 paper)

[75] Code ↔ Paper doi:10.1038/s41467-026-73858-8 [paper, repository]

A pegivirus associated with encephalitis in red-legged partridges shows neurotropism across avian species.

Journal: Nature communications

Authors' code: nicola-palmieri/TableAnalyzer (MIT), Zenodo 19233119 (CC-BY-4.0)

Status: code verified, 114 files readable

Thursday, 4 June 2026 (1 paper)

[76] doi:10.1186/s12917-026-05562-0 [paper, data]

Differences in meat and wool quality and gastrointestinal/hypothalamic functions in Dexin fine-wool meat sheep with divergent residual feed intake.

Journal: BMC veterinary research

Status: data only, 3 datasets cited

Wednesday, 3 June 2026 (1 paper)

[77] doi:10.1186/s42523-026-00583-4 [paper, data]

The gut-brain-gonad axis mediates salinity adaptation in an invasive turtle: causal evidence from microbiota transplantation and metabolite supplementation.

Journal: Animal microbiome

Status: data only, 2 datasets cited

Monday, 1 June 2026 (6 papers)

[78] doi:10.1093/g3journal/jkag095 [paper]

Non-uniform chromosomal SNP density biases sites of meiotic crossovers in Drosophila melanogaster.

Journal: G3 (Bethesda, Md.)

Status: data only

[79] Code ↔ Paper doi:10.1093/molbev/msag128 [paper, repository]

Single-cell analyses of tissue regeneration in two true jellyfish.

Journal: Molecular biology and evolution

Authors' code: fanny-bio/jellyfish.rg.scrna (no license)

Status: empty repository

[80] Code ↔ Paper doi:10.7554/elife.107589 [paper, repository]

Distinct evolutionary trajectories of two integration centres, the central complex and mushroom bodies, across Heliconiini butterflies.

Journal: eLife

Authors' code: Zenodo 15304965 (CC-BY-4.0)

Status: code verified, 1 file readable, 3 matches

[81] Code ↔ Paper doi:10.1111/jne.70203 [paper, repository]

Nonapeptide molecular evolution during the adaptive radiation of Tanganyika cichlids.

Journal: Journal of neuroendocrinology

Authors' code: psorigue/Molecular-evolution-OTVT-in-LT-cichlids (MIT), Zenodo 19077530 (MIT)

Status: code verified, 27 files readable, 20 matches

[82] Code ↔ Paper doi:10.1093/molbev/msag149 [paper, repository]

Multiple modes of selection underlie repeated and human-mediated adaptation in a formerly migratory fish.

Journal: Molecular biology and evolution

Authors' code: rileycorcoran (no license), ksiewert/betascan (no license), rileycorcoran/Alewife-Selection (MIT)

Status: code verified, 20 files readable, 8 matches

[83] Code ↔ Paper doi:10.1021/acsomega.6c03545 [paper, repository]

Prediction of Digestible and Metabolizable Energy in Swine Feed Using Machine Learning.

Journal: ACS omega

Authors' code: Niceyjw/pig-feed-prediction-tool (no license)

Status: empty repository, 1 file readable

Friday, 29 May 2026 (1 paper)

[84] Code ↔ Paper doi:10.1073/pnas.2603690123 [paper, repository]

Path integration in complex number space.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: YuYuB/Path_Integration_Simulation_Dr.Craddock_2026 (no license), Zenodo 19262464 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

Thursday, 28 May 2026 (2 papers)

[85] Code ↔ Paper doi:10.1242/jeb.252069 [paper, repository]

First come, first served: neuronal processing of multi-echo streams in the auditory cortex of echolocating bats.

Journal: The Journal of experimental biology

Authors' code: figshare 30883511 (CC-BY-4.0)

Status: code verified, 4 files readable

[86] Code ↔ Paper doi:10.7554/elife.107393 [paper, repository]

Chromosome-scale genome assembly of the European common cuttlefish <i>Sepia officinalis</i>.

Journal: eLife

Authors' code: gitlab.mpcdf.mpg.de/mpibr/laur/cuttlefishomics/soffgenome (MIT)

Status: code verified, 68 files readable, 40 matches

Wednesday, 27 May 2026 (3 papers)

[87] Code ↔ Paper doi:10.1523/jneurosci.1104-25.2026 [paper, repository]

Timbre Encoding in the Inferior Colliculus.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: urmc.rochester.edu/labs/carney (no license), OSF uyn56 (no license), jfritzinger/FritzingerCarney2025-SynthTimbre (no license)

Status: code verified, 236 files readable, 22 matches

[88] Code ↔ Paper doi:10.1038/s41598-026-54678-8 [paper, repository]

Neural correlates of appetitive extinction learning: an fMRI study with actively participating pigeons.

Journal: Scientific reports

Authors' code: mehdibehroozi/pigeon_fMRI (no license)

Status: code verified, 18 files readable, 3 matches

[89] doi:10.1038/s42003-026-10366-x [paper, data]

Molecular signatures and lineage diversification of neurogenic and gliogenic radial glia in the gyrencephalic ferret cortex.

Journal: Communications biology

Status: data only, 1 dataset cited

Tuesday, 26 May 2026 (2 papers)

[90] doi:10.1242/dmm.052803 [paper, data]

Molecular features of a Huntington's disease knock-in minipig.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[91] doi:10.3390/ani16111618 [paper, data]

Derivation of Equine Mesenchymal Stem/Stromal Cells from Induced Pluripotent Stem Cells via the Neural Crest Pathway and Characterisation by Immunophenotype and Tri-Lineage Differentiation.

Journal: Animals : an open access journal from MDPI

Status: data only, 2 datasets cited

Monday, 25 May 2026 (1 paper)

[92] Code ↔ Paper doi:10.1038/s41467-026-73305-8 [paper, repository]

Comparative analysis of the cellular landscape in mammalian striatum.

Journal: Nature communications

Authors' code: konopkalab/Comparative_striatum (MIT), Zenodo 19266844 (MIT)

Status: code verified, 172 files readable, 23 matches

Saturday, 23 May 2026 (1 paper)

[93] Code ↔ Paper doi:10.1016/j.isci.2026.116039 [paper, repository]

Caste- and sex-specific differential investment in brain regions of Australian ants.

Journal: iScience

Authors' code: tinyurl.com/ypbvbbh7 (no license)

Status: code found, not verified yet

Friday, 22 May 2026 (2 papers)

[94] Code ↔ Paper doi:10.1038/s42003-026-10319-4 [paper, repository]

Neurons in the bat auditory cortex encode class and complexity of future vocalizations.

Journal: Communications biology

Authors' code: doi:10.12751/g-node.44wmeq (no license)

Status: code verified

[95] doi:10.1016/j.ijppaw.2026.101239 [paper, data]

Effects of fipronil bait pellets on two cricetid species: Potential implications for plague mitigation and wildlife conservation.

Journal: International journal for parasitology. Parasites and wildlife

Status: data only, 1 dataset cited

Thursday, 21 May 2026 (4 papers)

[96] Code ↔ Paper doi:10.1371/journal.pbio.3003803 [paper, repository]

The anti-neural role of BMP signaling is a consequence of its ancestral function in dorsoventral patterning.

Journal: PLoS biology

Authors' code: Zenodo 19686897 (CC-BY-4.0), genikhovich-lab/data-for-plots (no license), Genikhovich-Lab/Stomolophus (no license), Zenodo 19686882 (CC-BY-4.0), Genikhovich-Lab (no license)

Status: code verified, 10 files readable, 2 matches

[97] doi:10.1038/s41467-026-72982-9 [paper]

Elevated temperature fatally disrupts nuclear divisions in the early Drosophila embryo.

Journal: Nature communications

Status: code on request

[98] Code ↔ Paper doi:10.1186/s12915-026-02643-2 [paper, repository]

Circulating microRNAs reveal egg-brain crosstalk and a brain-predominant microRNA linked to the onset of the next reproductive cycle in iteroparous salmonids.

Journal: BMC biology

Authors' code: INRAE-LPGP/phenomir (no license)

Status: code verified, 54 files readable, 3 matches

[99] Code ↔ Paper doi:10.3389/fimmu.2026.1776555 [paper, repository]

Multi-omics analysis of long COVID (post-COVID-19 condition) reveals persistent mitochondrial dysfunction, suppressed oxidative phosphorylation, and immune dysregulation.

Journal: Frontiers in immunology

Authors' code: easlinger (no license), shehbeel (no license)

Status: code verified

Wednesday, 20 May 2026 (1 paper)

[100] Code ↔ Paper doi:10.1126/sciadv.aeb8034 [paper, repository]

Deciphering the ancestral mechanisms of neural regeneration through single-cell analyses of jellyfish rhopalium repair.

Journal: Science advances

Authors' code: Zenodo 19466460 (CC-BY-4.0)

Status: code verified, 2 files readable, 3 matches

Tuesday, 19 May 2026 (1 paper)

[101] Code ↔ Paper doi:10.3389/fncom.2026.1771884 [paper, repository]

NEURONpyxl: fast, flexible, Python-integrated simulation of biophysical neural networks with complex plastic synapses.

Journal: Frontiers in computational neuroscience

Authors' code: CWRUChielLab/neuronpyxl (GPL-3.0), CWRUChielLab/NEURONpyxl-2026-figures (no license)

Status: code verified, 42 files readable, 13 matches

Monday, 18 May 2026 (1 paper)

[102] Code ↔ Paper doi:10.1038/s41467-026-73192-z [paper, repository]

Chromatin- and actin-mediated mitochondrial streaming leads to patterning of mitochondrial distribution in oocytes.

Journal: Nature communications

Authors' code: mathworks.com/matlabcentral/fileexchange (no license), Zenodo 19426009 (CC-BY-4.0)

Status: code verified

Wednesday, 13 May 2026 (3 papers)

[103] doi:10.1371/journal.pbio.3003768 [paper, data]

Premotor cortex hemodynamic responses primarily reflect perceptual rather than specific motor aspects of decision making.

Journal: PLoS biology

Status: data only, 1 dataset cited

[104] Code ↔ Paper doi:10.1126/sciadv.aeb8106 [paper, repository]

A thyroid hormone-mediated opsin switch initiates metamorphosis in a proto-vertebrate.

Journal: Science advances

Authors' code: andreamariossi/thyroid_hormone_Ciona (no license), Zenodo 19336448 (CC-BY-4.0)

Status: code verified, 28 files readable, 10 matches

[105] doi:10.1038/s41467-026-73011-5 [paper, data]

Greatwall depletion from Xenopus oocytes reveals a key role of the cyclin B/CDK1-PP2A-B55 balance in the coordination of meiotic events.

Journal: Nature communications

Status: data only, 2 datasets cited

Monday, 11 May 2026 (2 papers)

[106] doi:10.1242/dmm.052585 [paper, data]

Induced pluripotent stem cells from a transgenic minipig model of Huntington's disease reveal early metabolic changes.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[107] Code ↔ Paper doi:10.1242/jcs.264598 [paper, repository]

Multiple glycoforms of TrkA interact with N-cadherin during trigeminal ganglion neurodevelopment.

Journal: Journal of cell science

Authors' code: Zenodo 18422165 (CC-BY-4.0)

Status: code verified, 1 file readable

Thursday, 7 May 2026 (2 papers)

[108] doi:10.1038/s41522-026-00995-9 [paper, data]

Gut microbiota-GABA axis dysregulation underlies polystyrene microplastic (PS-MP) neurotoxicity in rainbow trout: a role for oxidative stress and blood-brain barrier disruption.

Journal: NPJ biofilms and microbiomes

Status: data only, 1 dataset cited

[109] doi:10.1038/s41598-026-40739-5 [paper, data]

Cerebro Wave Bee transformer to leverage EEG based hand movement classification using optimized bio-inspired learning rates.

Journal: Scientific reports

Status: data only, 1 dataset cited

Tuesday, 5 May 2026 (1 paper)

[110] doi:10.7554/elife.102890 [paper, data]

Auditory perception and neural representation of temporal features are altered by age but not by cochlear synaptopathy.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 4 May 2026 (2 papers)

[111] doi:10.1371/journal.pbio.3003773 [paper, data]

An anatomical and connectivity atlas of the tree shrew brain to bridge rodent and primate neuroanatomy.

Journal: PLoS biology

Status: data only, 1 dataset cited

[112] Code ↔ Paper doi:10.1371/journal.ppat.1013916 [paper, repository]

Characterization of atypical Ebola virus disease in ferrets.

Journal: PLoS pathogens

Authors' code: jaudetnml/Atypical_EBOV_ferrets (Apache-2.0)

Status: code verified, 5 files readable, 3 matches

Friday, 1 May 2026 (3 papers)

[113] doi:10.1002/pro.70580 [paper, data]

Conkazal-M1 from the MKAVA family of conotoxins: A dual-function protease inhibitor and neuroactive peptide.

Journal: Protein science : a publication of the Protein Society

Status: data only, 2 datasets cited

[114] Code ↔ Paper doi:10.1111/mec.70360 [paper, repository]

Unmated Queens Show Worker-Like Behaviour and Gene Expression in Polygynous Colonies of the Ant Stigmatomma pallipes.

Journal: Molecular ecology

Authors' code: Joscolgan/stigmatomma_pallipes_genome (GPL-3.0)

Status: code verified, 14 files readable

[115] doi:10.1093/jvimsj/aalag085 [paper, data]

Progressive abnormal gait in an adult Jack Russell Terrier with a homozygous frameshift variant in SETX (senataxin).

Journal: Journal of veterinary internal medicine

Status: data only, 1 dataset cited

Thursday, 30 April 2026 (1 paper)

[116] Code ↔ Paper doi:10.1016/j.isci.2026.115951 [paper, repository]

An elephant in the room amplifies discomfort when the virtual reality space matches physical reality.

Journal: iScience

Authors' code: kaggle.com/code/melslater (no license)

Status: dead link

Wednesday, 29 April 2026 (1 paper)

[117] Code ↔ Paper doi:10.1371/journal.pone.0345922 [paper, repository]

In vivo efficacy of current stimuli computed by optimal tracking of neuron membrane voltage.

Journal: PloS one

Authors' code: figshare 25241503 (CC-BY-4.0)

Status: code verified

Monday, 27 April 2026 (1 paper)

[118] doi:10.3390/biom16050649 [paper, data]

Retention and Distribution of Dopamine-Dependent Reward Memory in Regenerating Planaria.

Journal: Biomolecules

Status: data only, 1 dataset cited

Saturday, 25 April 2026 (1 paper)

[119] doi:10.1007/s00424-026-03173-0 [paper, data]

Guinea pig δβγ-ENaC is locked in an open state and uncoupled from regulation by proteases.

Journal: Pflugers Archiv : European journal of physiology

Status: data only, 1 dataset cited

Thursday, 23 April 2026 (2 papers)

[120] doi:10.1242/jeb.251399 [paper, data]

Variation in behavioural maturation in tropical honey bees corresponds with hormonal and molecular differences.

Journal: The Journal of experimental biology

Status: data only, 1 dataset cited

[121] Code ↔ Paper doi:10.1186/s12864-026-12863-z [paper, repository]

Chromosome-level genome assembly of the nematophagous flatworm Luticola nematophagus: revealing molecular adaptations for predation and its biocontrol potential against nematode diseases.

Journal: BMC genomics

Authors' code: StoreyLab/qvalue (no license)

Status: code verified, 12 files readable

Wednesday, 22 April 2026 (2 papers)

[122] Code ↔ Paper doi:10.1126/sciadv.aec6922 [paper, repository]

A sensorimotor instability drives a locomotor transition during fish development.

Journal: Science advances

Authors' code: Zenodo 17650136 (CC-BY-4.0)

Status: code verified, 1 file readable

[123] doi:10.3390/biom16050621 [paper, data]

Calretinin and Parvalbumin Trapping of TDP43 and XRCC1 Instructs Neocortical Interneuron Death in Neonatal Hypoxic-Ischemic Encephalopathy.

Journal: Biomolecules

Status: data only, 2 datasets cited

Monday, 20 April 2026 (1 paper)

[124] Code ↔ Paper doi:10.1242/jeb.251686 [paper, repository]

Neural and behavioral responses to reproductive signals in male chorus frogs.

Journal: The Journal of experimental biology

Authors' code: figshare 31904626 (CC-BY-4.0)

Status: code verified, 1 file readable, 5 matches

Monday, 13 April 2026 (2 papers)

[125] doi:10.1073/pnas.2514030123 [paper, data]

When a bigger brain is better: The case of bee olfactory learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[126] doi:10.3389/fnut.2026.1776896 [paper, data]

Maternal docosahexaenoic acid supplementation shapes offspring gut microbiota to modulate the gut-brain axis in a sow-piglet model.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

Friday, 10 April 2026 (4 papers)

[127] Code ↔ Paper doi:10.1038/s41467-026-71720-5 [paper, repository]

RESCUE: recovery of unattributed expression patterns in spatial transcriptomics.

Journal: Nature communications

Authors' code: brunoyjlee/RESCUE (no license), LieberInstitute/spatialLIBD (Artistic-2.0), Zenodo 18965449 (CC-BY-4.0)

Status: code verified, 112 files readable, 3 matches

[128] doi:10.1038/s41597-026-07102-9 [paper, data]

Chromosome-level genome assembly and annotation of the moon jellyfish Aurelia coerulea.

Journal: Scientific data

Status: data only, 1 dataset cited

[129] Code ↔ Paper doi:10.1002/mrm.70380 [paper, repository]

The Impact and Reliability of Tissue Segmentation on In Vivo Magnetic Resonance Spectroscopy Metabolite Quantification.

Journal: Magnetic resonance in medicine

Authors' code: openneuro:ds006444 (no license), arcj-hub/BasisSetSimulation (CC0-1.0)

Status: code verified, 17 files readable, 4 matches

[130] doi:10.1007/s10616-026-00950-8 [paper, data]

Stable mammalian expression of His-tagged prestin in Chinese hamster ovary cells.

Journal: Cytotechnology

Status: data only, 3 datasets cited

Wednesday, 8 April 2026 (2 papers)

[131] Code ↔ Paper doi:10.1371/journal.ppat.1014115 [paper, repository]

Venezuelan equine encephalitis virus infection causes chronic neurobehavioral outcomes, cellular remodeling, and hippocampal single-cell transcriptomic changes.

Journal: PLoS pathogens

Authors' code: Gavin-Yinld/VEEV_scRNA-seq (no license)

Status: code verified, 2 files readable, 3 matches

[132] Code ↔ Paper doi:10.3390/biom16040552 [paper, repository]

Electrophysiological Characterization of the Venom and Toxins from the Scorpion <i>Tityus championi</i> Targeting Voltage-Gated Sodium Channels and Molecular Modeling of Tch3, a Toxin with Therapeutic Potential for Pain Relief.

Journal: Biomolecules

Authors' code: GalitAkerman/Statistics-Helix-Article (no license), GalitAkerman/CR-ScorpionVenom-Nav (MIT)

Status: code verified, 7 files readable

Tuesday, 7 April 2026 (1 paper)

[133] doi:10.26508/lsa.202503455 [paper, data]

Catalytic activity of KMT5B promotes ciliogenesis without affecting global chromatin accessibility.

Journal: Life science alliance

Status: data only, 1 dataset cited

Thursday, 2 April 2026 (1 paper)

[134] Code ↔ Paper doi:10.1038/s41467-026-71360-9 [paper, repository]

Perinatal brain developmental transition revealed by transcriptomic and proteomic analyses of Bama miniature pigs.

Journal: Nature communications

Authors' code: lmfeng/PBAtlas_Perinatal_Multiome (no license)

Status: code verified, 8 files readable, 15 matches

Wednesday, 1 April 2026 (1 paper)

[135] Code ↔ Paper doi:10.1111/nyas.70250 [paper, repository]

Structure, Dynamics, and Neural Codes in a Bat Social Network.

Journal: Annals of the New York Academy of Sciences

Authors' code: Zenodo 13938638 (CC-BY-4.0)

Status: code verified