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Peroxisomal import is circadian in glia and regulates sleep and lipid metabolism.

Code ↔ Paper

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The 1 match
  1. [1] § Results › Loss of Pex5 selectively in cortex glia disrupts sleep ↔ Sleep/DAM_2026_Das_metrics.R, lines 1088–1148 · score 0.57 · Sleep bout duration, beam crossings, Activity bouts, S1, min, day

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

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The authors' code

R · 3,769 lines · 129 KB · no license · 1 match

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It can be read at the source: Sleep/DAM_2026_Das_metrics.R.

Overview

Authors: Anurag Das1,2, Irma Magaly Rivas-Serna3, Ankur Kumar1,4, Lakpa Sherpa1,4, Kerui Huang1, Hia Kalita5, Marlene Dorneich-Hayes1,4, Ruiqi Liu1,5, Vera C Mazurak3, John P Vaughen6, Hua Bai1
  1. Department of Genetics, Development, and Cell Biology, Iowa State University, Ames, Iowa, United States of America
  2. Interdepartmental Neuroscience PhD Program, Iowa State University, Ames, Iowa, United States of America
  3. Department of Agriculture, Food, and Nutritional Science, University of Alberta, Edmonton, Canada
  4. Interdepartmental Genetics & Genomics PhD Program, Iowa State University, Ames, Iowa, United States of America
  5. Interdepartmental MCDB PhD Program, Iowa State University, Ames, Iowa, United States of America
  6. Department of Anatomy, University of California San Francisco, San Francisco, California, United States of America
Institutions: Iowa State University (United States); University of Alberta (Canada); University of California, San Francisco (United States)
Journal: PLoS biology, volume 24, issue 7, article e3003901
Dates: received 28 March 2026; accepted 29 June 2026; published online 15 July 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1371/journal.pbio.3003901 · PMID 42455861 · PMCID PMC13387613 · OpenAlex W4411639224
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: drosophila (organism), cellular / molecular (subfield)
Methods: Statistics, Smoothing, state filtering, decompositions, Machine learning, Preprocessing, Evoked potentials, Connectivity, fMRI & imaging
MeSH: Circadian Rhythm*, Lipid Metabolism*, Neuroglia*, Peroxisomes*, Sleep*, Animals, Brain, Circadian Clocks, Drosophila melanogaster, Drosophila Proteins, Neurons, Peroxisome-Targeting Signal 1 Receptor, Protein Transport (* major topic)
Topic: Circadian rhythm and melatonin (Endocrine and Autonomic Systems, Neuroscience), according to OpenAlex
Funding: NIH HHS (OT2 OD030544, P40 OD018537); National Science Foundation (NSF CAREER 2046984); National Institute on Aging (R01AG075156); NIDDK NIH HHS (U2C DK119886, U2C DK119889); NIA NIH HHS (R01 AG075156); Sandler Foundation; Simons Foundation; Hevolution (HF- GRO-23-1199062-14); NHGRI NIH HHS (U41 HG000739)
Citations: not cited yet (Europe PMC); 108 references in the paper

Abstract

Peroxisomes are critical organelles that detoxify cellular waste while also catabolizing and anabolizing lipids. How peroxisomes coordinate protein import and support metabolic functions across complex tissues and timescales remains poorly understood in vivo. Using the Drosophila brain, we discover a striking enrichment of peroxisomes in the neuronal soma and the cortex glia that enwrap them. Unexpectedly, import of peroxisomal proteins into cortex glia, but not neurons, oscillated across time and peaked in the early morning. Rhythmic peroxisomal import in cortex glia autonomously required the circadian clock and Peroxin 5 (Pex5; peroxisomal biogenesis factor 5 homolog), with import persistently elevated in clock mutants. Notably, reducing Pex5 in cortex glia, but not neurons, caused hyperactivity and reduced total sleep. Moreover, brain lipid metabolism was dramatically altered upon Pex5 knockdown, with glia impacting sphingolipids and triacylglycerols, and neurons impacting phospholipids. The cell-type specificity of these Pex5 phenotypes highlights unique roles for peroxisomal import in both sleep and lipid metabolism in the brain.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repositories

Its files are read in the Code ↔ Paper reader above, with 1 match between paragraphs and lines of code.

Zenodo 20637355

License: CC-BY-4.0
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Size: 1 file
Software Heritage: not checked
Found in: “Data Availability”
Not found: README, license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: cowplot (2 files), ggplot2 (2 files), tidyverse (2 files), broom (1 file), circlize (1 file), ComplexHeatmap (1 file), emmeans (1 file), ggpubr (1 file), patchwork (1 file), rstatix (1 file)
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
  • 27 September 2026: the link answers (HTTP 200)
3 files

jvaughen/das

License: none: the authors keep all their rights
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Commit: a60091d58874746a4ea01594d3a18f26f69e6ddc, 10 June 2026
Languages: R (2)
Size: 14 files, 2 scripts
Software Heritage: not archived
Found in: the Zenodo archive record
Holds: README
Not found: license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: cowplot (2 files), ggplot2 (2 files), tidyverse (2 files), broom (1 file), circlize (1 file), ComplexHeatmap (1 file), emmeans (1 file), ggpubr (1 file), patchwork (1 file), rstatix (1 file)
Availability: 1 check, the latest on 27 September 2026: the link answers
  • 27 September 2026: the link answers
3 files, not copied: shown from their source

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Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 2 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 4 scripts, each with its path and the digest of its content;
  • 1 match between paragraphs of the paper and lines of the code (method lexical-v1);
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Data Availability

Lipidomics raw data generated is available at the NIH Common Fund’s National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID #7642. The data can be accessed directly via http://dx.doi.org/10.21228/M8XK2W. Code generated and processed lipidomics data (in ng/brain and rel % composition/brain) are accessible at https://zenodo.org/records/20637355. All other relevant data can be found within the manuscript and supplemental files.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 2, 28 September 2026

  • Authors: added John P Vaughen (0000-0002-7141-1857); Hua Bai (0000-0003-2221-7545); removed John P Vaughen; Hua Bai

Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 11 authors, 13 MeSH terms, 9 funders, 108 references, 21 RRIDs.

Cite

This paper

Das, A., Rivas-Serna, I. M., Kumar, A., Sherpa, L., Huang, K., Kalita, H., Dorneich-Hayes, M., Liu, R., Mazurak, V. C., Vaughen, J. P., & Bai, H. (2026). Peroxisomal import is circadian in glia and regulates sleep and lipid metabolism. PLoS biology, 24(7), e3003901. https://doi.org/10.1371/journal.pbio.3003901

BibTeX

@article{das2026peroxisomal,
author = {Das, Anurag and Rivas-Serna, Irma Magaly and Kumar, Ankur and Sherpa, Lakpa and Huang, Kerui and Kalita, Hia and Dorneich-Hayes, Marlene and Liu, Ruiqi and Mazurak, Vera C and Vaughen, John P and Bai, Hua},
title = {{Peroxisomal import is circadian in glia and regulates sleep and lipid metabolism}},
journal = {PLoS biology},
year = {2026},
month = jul,
volume = {24},
number = {7},
pages = {e3003901},
publisher = {PLOS},
issn = {1544-9173},
doi = {10.1371/journal.pbio.3003901},
url = {https://doi.org/10.1371/journal.pbio.3003901},
pmid = {42455861},
pmcid = {PMC13387613}
}

RIS

TY - JOUR
AU - Das, Anurag
AU - Rivas-Serna, Irma Magaly
AU - Kumar, Ankur
AU - Sherpa, Lakpa
AU - Huang, Kerui
AU - Kalita, Hia
AU - Dorneich-Hayes, Marlene
AU - Liu, Ruiqi
AU - Mazurak, Vera C
AU - Vaughen, John P
AU - Bai, Hua
TI - Peroxisomal import is circadian in glia and regulates sleep and lipid metabolism
T2 - PLoS biology
J2 - PLoS Biol
PY - 2026
DA - 2026/07/15
VL - 24
IS - 7
SP - e3003901
SN - 1544-9173
PB - PLOS
DO - 10.1371/journal.pbio.3003901
UR - https://doi.org/10.1371/journal.pbio.3003901
LA - en
ER -

CSL-JSON

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