Decoding visual object recognition from EEG signals.
The 18 matches
- [1] § Materials and methods › Source modeling and regions of interest › Source space. ↔ scripts/mne_source_localization_trialwise.py, lines 188–285 · score 0.92 · Noise covariance, depth weighted, BEM solution, cortical surface, source localization, source space
- [2] § Materials and methods › Tasks and evaluation protocol ↔ scripts/dipole_selection_roi.py, lines 43–53 · score 0.91 · African elephant, desktop computer, electric guitar, folding chair, airliner, banana
- [3] § Materials and methods › Tasks and evaluation protocol ↔ scripts/train_paper.py, lines 63–66 · score 0.91 · African elephant, desktop computer, electric guitar, folding chair, airliner, banana
- [4] § Results ↔ scripts/train_classifier.py, lines 1–52 · score 0.87 · logistic regression, linear SVM, candidate classifiers, ridge classifier, class pilot, ROI core
- [5] § Results › Classifier and feature-family screening › Classifier selection. ↔ scripts/train_classifier.py, lines 1–52 · score 0.86 · logistic regression, candidate classifiers, Linear SVM, band power representation, ridge classifier, class pilot
- [6] § Materials and methods › Feature extraction › Band power. ↔ scripts/train_paper.py, lines 240–262 · score 0.81 · 8–13 Hz, 13–30 Hz, 30–120, 1–4 Hz, 4–8 Hz, beta
- [7] § Materials and methods › Classifiers ↔ scripts/train_classifier.py, lines 78–147 · score 0.78 · logistic regression, candidate classifier, linear SVM, ridge classifier, KNN, RF
- [8] § Results › Evaluation on full EEG-ImageNet label sets ↔ scripts/dipole_selection_roi.py, lines 61–75 · score 0.74 · superior frontal, dlPFC, visual cortex, cuneus, PCC, IPL
- [9] § Results › Evaluation on full EEG-ImageNet label sets ↔ scripts/dipole_selection_roi_all_class.py, lines 45–59 · score 0.74 · superior frontal, dlPFC, visual cortex, cuneus, PCC, IPL
- [10] § Materials and methods › Classifiers ↔ scripts/train_classifier.py, lines 78–147 · score 0.73 · logistic regression, linear SVM, Ridge classification, distance, KNN, pipelines
- [11] § Materials and methods › Feature extraction › Coupling measures. ↔ scripts/train_paper.py, lines 1–45 · score 0.70 · 13–30 Hz, 30–120 Hz, 70–150 Hz, phase, PLV, amplitude
- [12] § Materials and methods › Classifiers ↔ scripts/train_classifier.py, lines 226–333 · score 0.69 · power features, Classifier comparison, ROI high, band power, class pilot, folds
- [13] § Materials and methods › Feature extraction › Band power. ↔ scripts/train_paper.py, lines 1–45 · score 0.63 · 30–120 Hz, 70–150 Hz, band power, configurations, train, 70 Hz
- [14] § Results › Classifier and feature-family screening › Catch22 features. ↔ scripts/dipole_selection_roi.py, lines 61–75 · score 0.61 · superior frontal, dlPFC, IPL, SPL, parahippocampal, precuneus
- [15] § Results › Classifier and feature-family screening › Catch22 features. ↔ scripts/dipole_selection_roi_all_class.py, lines 45–59 · score 0.61 · superior frontal, dlPFC, IPL, SPL, parahippocampal, precuneus
- [16] § Results › Evaluation on full EEG-ImageNet label sets ↔ scripts/pair_test_ll24_vs_ll50_full_auto.py, lines 1–34 · score 0.60 · paired Wilcoxon signed, LL baseline, rank, Coarse, EEG, 50 ROIs
- [17] § Results › Baseline models with feature-family add-ons › Add-ons on the line-length baseline. ↔ scripts/pair_test_ll24_vs_ll50_full_auto.py, lines 1–34 · score 0.56 · paired Wilcoxon signed, LL baseline, rank
- [18] § Results › Baseline selection and feature add-ons ↔ scripts/train_classifier.py, lines 226–333 · score 0.54 · 70–150 Hz, ROI high, band power, 70 Hz, pilot, accuracy
Paper
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The authors' code
Python · 337 lines · 9.8 KB · MIT · 6 matches
- #!/usr/bin/env python3
- # -*- coding: utf-8 -*-
- """
- train_classifier.py
- ===================
- Classifier selection experiment for the 8-class pilot:
- - Uses the same data-loading procedure and ROI order as train_paper.py
- (24-ROI core parcellation, 8-class subset).
- - Builds a 24-dimensional high-gamma (70–150 Hz) band-power representation.
- - Compares five candidate classifiers:
- 1) Random Forest (RF)
- 2) Linear SVM
- 3) ℓ2-regularized multinomial Logistic Regression
- 4) K-Nearest Neighbors (KNN)
- 5) Ridge Classifier
- All three models are evaluated on:
- - the same subjects,
- - the same trials,
- - the same 5-fold stratified CV splits,
- - the same feature representation.
- For each subject and classifier, we report mean ± SD accuracy across folds.
- We then summarize accuracy across subjects for each classifier.
- Usage:
- cd imed-mne/train-paper
- python train_classifier.py --subjects all
- # or specific subjects:
- # python train_classifier.py --subjects 0 1 2
- """
- import argparse
- from pathlib import Path
- from typing import Dict, Tuple, List
- import numpy as np
- import pandas as pd
- from sklearn.model_selection import StratifiedKFold
- from sklearn.metrics import accuracy_score
- from sklearn.preprocessing import LabelEncoder
- from sklearn.svm import LinearSVC
- from sklearn.linear_model import LogisticRegression
- from sklearn.pipeline import make_pipeline
- from sklearn.preprocessing import StandardScaler
- from sklearn.base import clone
- from sklearn.neighbors import KNeighborsClassifier
- from sklearn.linear_model import RidgeClassifier
- # Import data-loading and feature-building utilities from train_paper.py
- from train_paper import (
- load_subject_trials, # X, y, sfreq, roi_names
- features_gamma, # gamma band-power features
- ROI_ORDER_24,
- RANDOM_STATE,
- )
- # -------------------------------
- # Config
- # -------------------------------
- # High-gamma band for classifier comparison (Hz)
- GAMMA_BAND: Tuple[float, float] = (70.0, 150.0)
- # Output directory
- DEFAULT_OUT_DIR = Path("./outputs_classifier_selection")
- DEFAULT_OUT_DIR.mkdir(parents=True, exist_ok=True)
- # -------------------------------
- # Classifier factory
- # -------------------------------
- def build_classifier_dict(random_state: int) -> Dict[str, object]:
- """
- Define the candidate classifiers with reasonable, symmetric settings.
- - Random Forest (RF): same hyperparameters as train_paper.py
- - Linear SVM: LinearSVC with L2 penalty and class_weight='balanced'
- - Logistic Regression: multinomial, L2, class_weight='balanced'
- - KNN: distance-based classifier with standardized inputs
- - Ridge: linear ridge classifier with standardized inputs
- All linear / distance-based models are wrapped in a StandardScaler pipeline.
- """
- from sklearn.ensemble import RandomForestClassifier
- clf_rf = RandomForestClassifier(
- n_estimators=500,
- max_depth=None,
- max_features='sqrt',
- class_weight='balanced',
- random_state=random_state,
- n_jobs=-1,
- )
- clf_svm = make_pipeline(
- StandardScaler(),
- LinearSVC(
- C=1.0,
- class_weight='balanced',
- max_iter=10000,
- )
- )
- clf_logreg = make_pipeline(
- StandardScaler(),
- LogisticRegression(
- penalty="l2",
- C=1.0,
- solver="lbfgs",
- max_iter=1000,
- class_weight="balanced",
- )
- )
- clf_knn = make_pipeline(
- StandardScaler(),
- KNeighborsClassifier(
- n_neighbors=5,
- weights="distance",
- metric="minkowski",
- p=2, # Euclidean distance
- )
- )
- clf_ridge = make_pipeline(
- StandardScaler(),
- RidgeClassifier(
- alpha=1.0,
- class_weight="balanced",
- random_state=random_state,
- )
- )
- return {
- "RandomForest": clf_rf,
- "LinearSVM": clf_svm,
- "LogisticRegression": clf_logreg,
- "KNN": clf_knn,
- "Ridge": clf_ridge,
- }
- # -------------------------------
- # CV evaluation helper
- # -------------------------------
- def evaluate_classifiers_for_subject(
- X: np.ndarray,
- y: np.ndarray,
- clf_dict: Dict[str, object],
- n_splits: int = 5,
- seed: int = 42,
- ) -> List[dict]:
- """
- Evaluate each classifier in clf_dict on the SAME CV splits for one subject.
- Parameters
- ----------
- X : array, shape (n_trials, n_features)
- Feature matrix for this subject.
- y : array-like, shape (n_trials,)
- Class labels (strings or integers).
- clf_dict : dict
- Mapping from classifier name -> sklearn estimator (unfitted).
- n_splits : int
- Number of stratified CV folds.
- seed : int
- Random seed for fold generation.
- Returns
- -------
- results : list of dict
- One entry per classifier with per-subject mean and SD accuracy and
- number of folds used.
- """
- # Encode labels for CV split stability (strings are fine, but encoding is explicit)
- le = LabelEncoder()
- y_enc = le.fit_transform(y)
- skf = StratifiedKFold(
- n_splits=n_splits,
- shuffle=True,
- random_state=seed,
- )
- # Generate splits once and reuse for all classifiers
- splits = list(skf.split(X, y_enc))
- results = []
- for clf_name, clf_proto in clf_dict.items():
- fold_accs = []
- for fold_idx, (tr_idx, te_idx) in enumerate(splits):
- X_tr, X_te = X[tr_idx], X[te_idx]
- y_tr, y_te = y_enc[tr_idx], y_enc[te_idx]
- # Clone classifier to avoid leakage between folds
- clf = clone(clf_proto)
- clf.fit(X_tr, y_tr)
- y_pred = clf.predict(X_te)
- acc = accuracy_score(y_te, y_pred)
- fold_accs.append(acc)
- fold_accs = np.asarray(fold_accs, dtype=float)
- results.append({
- "classifier": clf_name,
- "mean_acc_5fold": float(fold_accs.mean()),
- "std_acc_5fold": float(fold_accs.std()),
- "n_folds": int(len(fold_accs)),
- })
- return results
- # -------------------------------
- # Main
- # -------------------------------
- def main():
- parser = argparse.ArgumentParser(
- description="Classifier comparison on 8-class pilot using 24-ROI high-gamma (70–150 Hz) band power."
- )
- parser.add_argument(
- "--subjects",
- type=str,
- nargs="+",
- required=True,
- help="Subject IDs (0..15) or 'all' to scan ROI JSONs.",
- )
- parser.add_argument(
- "--out-dir",
- type=str,
- default=str(DEFAULT_OUT_DIR),
- help="Output directory for per-subject and group-level summaries.",
- )
- args = parser.parse_args()
- out_dir = Path(args.out_dir)
- out_dir.mkdir(parents=True, exist_ok=True)
- # Resolve subject list
- if len(args.subjects) == 1 and args.subjects[0].lower() == "all":
- # Discover subjects from ROI selection files, as in train_paper.py
- roi_dir = Path("../roi_selections")
- subs = sorted([
- int(p.stem.split('_')[1])
- for p in roi_dir.glob("subject_*_roi_selections.json")
- ])
- else:
- subs = [int(s) for s in args.subjects]
- print("Subjects to process:", subs)
- clf_dict = build_classifier_dict(random_state=RANDOM_STATE)
- all_rows = []
- for sid in subs:
- print(f"\n=== Subject {sid} ===")
- try:
- X_trials, y_labels, sfreq, roi_names = load_subject_trials(sid)
- except Exception as e:
- print(f"[ERR] Subject {sid}: {e}")
- continue
- if X_trials.size == 0 or len(y_labels) == 0:
- print(f"[WARN] Subject {sid}: no usable 8-class trials. Skipping.")
- continue
- n_trials, n_rois, n_times = X_trials.shape
- print(f" - Trials: {n_trials} | ROIs: {n_rois} | Timepoints: {n_times} | sfreq = {sfreq:.1f} Hz")
- # Build 24-ROI high-gamma (70–150 Hz) band-power features
- X_feat, feat_names = features_gamma(X_trials, sfreq, roi_names, GAMMA_BAND)
- print(f" - Feature representation: 24-ROI high-γ {GAMMA_BAND[0]}–{GAMMA_BAND[1]} Hz")
- print(f" -> Feature matrix shape: {X_feat.shape}")
- # Evaluate all classifiers for this subject
- subj_results = evaluate_classifiers_for_subject(
- X=X_feat,
- y=y_labels,
- clf_dict=clf_dict,
- n_splits=5,
- seed=RANDOM_STATE,
- )
- for r in subj_results:
- row = {
- "subject": sid,
- "n_trials": n_trials,
- "n_features": X_feat.shape[1],
- "classifier": r["classifier"],
- "mean_acc_5fold": r["mean_acc_5fold"],
- "std_acc_5fold": r["std_acc_5fold"],
- "n_folds": r["n_folds"],
- }
- all_rows.append(row)
- # Save per-subject results
- if not all_rows:
- print("\nNo results to save (no subjects with usable data).")
- return
- df = pd.DataFrame(all_rows)
- per_subject_path = out_dir / "classifier_selection_per_subject.csv"
- df.to_csv(per_subject_path, index=False)
- print(f"\nSaved per-subject results to: {per_subject_path}")
- # Group-level summary across subjects
- grouped = df.groupby("classifier")["mean_acc_5fold"].agg(
- mean_acc="mean",
- std_acc="std",
- n_subjects="count",
- ).reset_index()
- group_path = out_dir / "classifier_selection_group_summary.csv"
- grouped.to_csv(group_path, index=False)
- print(f"Saved group-level summary to: {group_path}")
- print("\n=== Group-level accuracy across subjects (8-class, 24-ROI high-γ) ===")
- for _, row in grouped.iterrows():
- name = row["classifier"]
- mean_acc = row["mean_acc"]
- std_acc = row["std_acc"]
- n_sub = int(row["n_subjects"])
- print(f"{name:18s} {mean_acc:.3f} ± {std_acc:.3f} (n={n_sub})")
- if __name__ == "__main__":
- main()
train_classifier.py at commit 36c5bdf, under MIT · at the source
Overview
- Department of Electrical and Computer Engineering, University of Toronto, Toronto, Ontario, Canada
- Vector Institute for Artificial Intelligence, Toronto, Ontario, Canada
- North York General Hospital, Toronto, Ontario, Canada
Abstract
Brain–computer interfaces (BCIs) and clinical EEG require compact and interpretable decoders, yet scalp sensors mix cortical signals and blur frequency-specific activity. Identifying which cortical regions and features carry discriminative visual information enables efficient, anatomically grounded object recognition decoding. This study localizes the cortical sources of informative EEG signals and identifies compact, mechanism-guided features that are most efficient given fixed data or compute budgets. To address this, we construct a source-space decoding pipeline that projects sensor signals onto anatomically defined cortical regions. Trial-wise activity is summarized within regions of interest (ROIs), and four feature families are extracted from each ROI: band-limited power (delta–gamma), line length (LL) for transient activity, temporal morphology, and couplings reflecting coordination between regions. Per-participant Random Forest (RF) classifiers are trained, and generality is quantified as consistency and ROI importance rankings across participants. A low-dimensional representation based on line length yields the strongest overall performance, while temporal morphology and coupling features contribute less under short RSVP (Rapid Serial Visual Presentation) trials. Relative to the EEG-ImageNet sensor-space baseline (310 features), the 24-ROI LL-only stack shows higher reported mean accuracy while using 92% fewer features (24 features), while a finer-grained, extended visual-pathway ROI set shows higher reported mean accuracy while using 84% fewer features (50 features). Adding a small, anatomically constrained high-γ block produces near-tied performance rather than a consistent improvement. These findings indicate that, for single-trial 0.5 s RSVP decoding, most discriminative information is captured by simple time-domain structure in anatomically defined ROIs. High-γ power remains a useful reference feature family, but its incremental value is limited once LL is included. By grounding features in neuro-informed regions, this approach compares favorably, at the level of reported mean accuracy, with the sensor-space baseline while providing clear anatomical attribution at substantially lower dimensionality, supporting lightweight and interpretable EEG decoding.
Reproduced under the paper's license (CC BY), from the paper cited above.
Repositories
Its files are read in the Code ↔ Paper reader above, with 18 matches between paragraphs and lines of code.
Promise-Z5Q2SQ/EEG-ImageNet-Dataset
7c78157100d3737690d73f206f4385e72613290d, 15 May 2025Availability: 1 check, the latest on 27 September 2026: the link answers
- 27 September 2026: the link answers
18 files
- scipt/
classification.sh — Shell, 21 lines - scipt/
generation_eval.sh — Shell, 21 lines - scipt/
generation_train.sh — Shell, 21 lines - src/
blip_clip.py — Python, 55 lines - src/
dataset.py — Python, 60 lines - src/
de_feat_cal.py — Python, 23 lines - src/
gen_eval.py — Python, 117 lines - src/
gen_img_list.py — Python, 34 lines - src/
image_generation.py — Python, 95 lines - src/
model/ — Python, 62 lineseegnet.py - src/
model/ — Python, 25 linesmlp.py - src/
model/ — Python, 24 linesmlp_sd.py - src/
model/ — Python, 190 linesrgnn.py - src/
model/ — Python, 26 linessimple_model.py - src/
object_classification.py — Python, 143 lines - src/
utilities.py — Python, 43 lines - LICENSE — License, 21 lines
- README.md — Text, 36 lines
anniekang1112/eeg-imagenet-visual-decoding
36c5bdf984848a146ea98e8aadf7e81b719f1674, 9 June 2026Availability: 1 check, the latest on 27 September 2026: the link answers
- 27 September 2026: the link answers
11 files
- scripts/
dipole_selection_roi.py — Python, 591 lines, 3 matches - scripts/
dipole_selection_roi_all — Python, 313 lines, 2 matches_class.py - scripts/
mne_source_localization_ — Python, 368 lines, 1 matchtrialwise.py - scripts/
pair_test_ll24_vs_ll50_f — Python, 146 lines, 2 matchesull_auto.py - scripts/
train_classifier.py — Python, 337 lines, 6 matches - scripts/
train_gamma_ll_baselines — Python, 769 lines.py - scripts/
train_ll_alone_24+50.py — Python, 688 lines - scripts/
train_paper.py — Python, 495 lines, 4 matches - scripts/
trial_mapping_recovery.p — Python, 320 linesy - LICENSE — License, 21 lines
- README.md — Text, 227 lines
Zenodo 20617271
Availability: 1 check, the latest on 27 September 2026: the link answers (HTTP 200)
- 27 September 2026: the link answers (HTTP 200)
11 files
- scripts/
dipole_selection_roi.py — Python, 591 lines - scripts/
dipole_selection_roi_all — Python, 313 lines_class.py - scripts/
mne_source_localization_ — Python, 368 linestrialwise.py - scripts/
pair_test_ll24_vs_ll50_f — Python, 146 linesull_auto.py - scripts/
train_classifier.py — Python, 337 lines - scripts/
train_gamma_ll_baselines — Python, 769 lines.py - scripts/
train_ll_alone_24+50.py — Python, 688 lines - scripts/
train_paper.py — Python, 495 lines - scripts/
trial_mapping_recovery.p — Python, 320 linesy - LICENSE — License, 21 lines
- README.md — Text, 226 lines
The paper's code and data availability statement is in the Data section.
Tracing map
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What the map holds:
- 3 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 34 scripts, each with its path and the digest of its content;
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Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
Datasets cited
- github.com/
benfulcher/ — at github.com; found in the referenceshctsatutorial_bonneeg
Data Availability
No new EEG dataset was generated by this study. The original EEG recordings analyzed in this work are publicly available through the EEG-ImageNet dataset repository. Original EEG-ImageNet dataset is publicly available from the GitHub repositories (https://
Reproduced under the paper's license (CC BY), from the paper cited above.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 1, 27 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 4 authors, 6 MeSH terms, 73 references.
Cite
This paper
Kang, Y., Dousty, M., Khodami, F., & Sejdić, E. (2026). Decoding visual object recognition from EEG signals. PloS one, 21(6), e0351872. https://
BibTeX
@article{kang2026decodin
author = {Kang, Yiwen and Dousty, Mehdy and Khodami, Farnaz and Sejdić, Ervin},
title = {{Decoding visual object recognition from EEG signals}},
journal = {PloS one},
year = {2026},
month = jun,
volume = {21},
number = {6},
pages = {e0351872},
publisher = {PLOS},
issn = {1932-6203},
doi = {10.1371/
url = {https://
pmid = {42341014},
pmcid = {PMC13293449}
}
RIS
TY - JOUR
AU - Kang, Yiwen
AU - Dousty, Mehdy
AU - Khodami, Farnaz
AU - Sejdić, Ervin
TI - Decoding visual object recognition from EEG signals
T2 - PloS one
J2 - PLoS One
PY - 2026
DA - 2026/
VL - 21
IS - 6
SP - e0351872
SN - 1932-6203
PB - PLOS
DO - 10.1371/
UR - https://
LA - en
ER -
CSL-JSON
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"type": "article-journal",
"title": "Decoding visual object recognition from EEG signals",
"container-title": "PloS one",
"author": [
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"family": "Kang",
"given": "Yiwen"
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"given": "Farnaz"
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"given": "Ervin"
}
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"container-title-short":
"volume": "21",
"issue": "6",
"page": "e0351872",
"DOI": "10.1371/
"PMID": "42341014",
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"URL": "https://
"language": "en",
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The map's fingerprint: sha256:333d0995824a1fc9…
Add the badge to its README
The badge links the code to this page. Copy one of these into the README of the paper's code: only you decide where it goes, and nothing is changed for you.
Markdown
[, paste the snippet at the top, then “Commit changes…” and, to review it first, “Create a new branch and start a pull request”. You open the pull request; OSCR asks for no permission.
Request its removal
To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).
Discussion, reproductions, activity
Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.
Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.
Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.
