Mesocorticostriatal Reinforcement Learning of State Representation and Value with Implications for the Mechanisms of Schizophrenia.
The 2 matches · all tie a paragraph to a whole file, not to given lines: weak matches, whose lines are not tinted
- [1] § Results › Simulated inputs to the striatum and possible correspondences to experimental results ↔ OVRNNRB1probrew.m, the whole file · a weak match · score 0.55 · fMRI, BOLD signal, sum, striatal units, RNN units, corticostriatal
- [2] § Results › Simulated inputs to the striatum and possible correspondences to experimental results ↔ OVRNNRB1probrew.m, the whole file · a weak match · score 0.54 · fMRI, BOLD signal, proxy, sum, striatum, reward
Paper
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The authors' code
MATLAB · 128 lines · 5 KB · no license · 2 matches
- function [os,xs,Vs,VDs,ds,w,wsd,bdc,bds,wbrs,P,meanPs,CDtoS,ef] = OVRNNRB1probrew(brdmode,modeltype,abase,g,drs,rewp,ndim,ns,nd,nt,P,iniPmean,plotyn)
- % OVRNNRB1probrew : code for probabilistic reward task
- % brdmode: 1:general, 2:two DA units receiving exclusively from two rewards, 3:brdmode 2 + another DA unit receiving evenly from two rewards
- % modeltype: 1:oVRNNrf-bio, 2:untrained RNN
- % abase: learning rate base, e.g., 0.1
- % g: time discount factor, e.g., 0.8
- % drs: decay rate for [cortico-striatal, striato-dopamine] weight per time-step, e.g., [0 0], [0.0002, 0.0002]
- % rewp: reward probability, e.g., 2/3
- % ndim: number of RNN units, e.g., 40
- % ns: number of striatal units, e.g., 10
- % nd: number of DA units, e.g., 5
- % nt: number of trials, e.g., 4000
- ITIs = NaN(1,nt);
- cue = [];
- rew = [];
- for k = 1:nt
- tmp = randperm(4);
- ITIs(k) = 2 + tmp(1);
- tmp_rand = rand;
- tmp_rand2 = rand;
- if tmp_rand <= 0.5
- cue = [cue [1;0] zeros(2,3+ITIs(k))];
- if tmp_rand2 <= rewp
- rew = [rew zeros(2,3) [1;0] zeros(2,ITIs(k))];
- else
- rew = [rew zeros(2,3) [0;0] zeros(2,ITIs(k))];
- end
- else
- cue = [cue [0;1] zeros(2,3+ITIs(k))];
- if tmp_rand2 <= rewp
- rew = [rew zeros(2,3) [0;1] zeros(2,ITIs(k))];
- else
- rew = [rew zeros(2,3) [0;0] zeros(2,ITIs(k))];
- end
- end
- end
- os = [cue; rew]; % observations
- if isempty(P)
- P = randn(ndim,ndim+4) + iniPmean; % initialization of the weights on the RNN units (combined A and B)
- end
- w = zeros(ns,ndim);
- wsd = zeros(nd,ns); % ones(nd,ns)/ns; %rand(nd,ns); % connections from striatum to dopamine neurons
- bdc = rand(ndim,nd)/nd; % fixed random connections from dopamine neurons to RNN units
- bds = rand(ns,nd)/nd; % fixed random connections from dopamine neurons to striatal neurons
- if brdmode == 1
- brd = rand(nd,2); % fixed random connections from the two rewards to dopamine neurons
- elseif brdmode == 2
- if nd ~= 2
- error('number of DA units (nd) must be 2 for brdmode=2');
- else
- brd = [1 0; 0 1];
- end
- elseif brdmode == 3
- if nd ~= 3
- error('number of DA units (nd) must be 3 for brdmode=3');
- else
- brd = [1 0; 0 1; 0.5 0.5];
- end
- else
- error('brdmode must be 1, 2, or 3');
- end
- ef = [0 0]; % exit flag
- tmpc101t = find(sum(cue,1),101,'first'); cue101time = tmpc101t(end); % time-step of cue at 101st trial
- tmax = 4*nt + sum(ITIs);
- CDtoS = NaN(2,tmax); % [Cortex_to_Striatum; Dopamine_to_Striatum]: sum of these (total inputs to striatum) is a proxy of fMRI BOLD signal at striatum
- Vs = NaN(ns,tmax);
- VDs = NaN(nd,tmax);
- ds = NaN(nd,tmax);
- Vs(:,1) = zeros(ns,1);
- xs = NaN(ndim,tmax);
- xs(:,1) = rand(ndim,1);
- wbrs = NaN(2,tmax); % correlation coefficient of [w&bdc; wsd&bds]
- meanPs = NaN(1,tmax); % time-development of mean(mean(P))
- meanPs(1) = mean(mean(P));
- for t = 2:tmax
- vec1 = reshape((wsd*w)',nd*ndim,1);
- vec2 = reshape(bdc,nd*ndim,1);
- [r,p] = corrcoef(vec1,vec2); wbrs(1,t) = r(1,2);
- vec1 = reshape(wsd',nd*ns,1);
- vec2 = reshape(bds,nd*ns,1);
- [r,p] = corrcoef(vec1,vec2); wbrs(2,t) = r(1,2);
- xs(:,t) = 1./(1 + exp(-P*[xs(:,t-1);os(:,t-1)]));
- Vs(:,t) = w * xs(:,t);
- if t >= 3
- VDs(:,t) = wsd * Vs(:,t);
- ds(:,t-1) = brd*rew(:,t-1) + g*wsd*Vs(:,t) - wsd*Vs(:,t-1);
- CDtoS(1,t) = sum(Vs(:,t)); % Cortex_to_Striatum
- CDtoS(2,t) = sum(bds*ds(:,t-1)); % Dopamine_to_Striatum
- wnew = max(0, w + (abase/(ndim/12))*(bds*ds(:,t-1))*xs(:,t-1)');
- wsdnew = max(0, wsd + (abase/(ndim/12))*ds(:,t-1)*Vs(:,t-1)');
- if modeltype == 1
- %P = P + abase*ds(t-1)*(xs(:,t-1).*(1-xs(:,t-1)).*b')*[xs(:,t-2);os(:,t-2)]';
- y = (xs(:,t-1)<0.5).*xs(:,t-1).*(1-xs(:,t-1)) + (xs(:,t-1)>=0.5)*0.5*0.5;
- P = P + abase*(y.*(bdc*ds(:,t-1)))*[xs(:,t-2);os(:,t-2)]';
- end
- w = wnew;
- wsd = wsdnew;
- end
- meanPs(t) = mean(mean(P));
- w = w * (1 - drs(1));
- wsd = wsd * (1 - drs(2));
- if (t>=cue101time) && (max(max(w))==0)
- ef(1) = 1;
- end
- if (t>=cue101time) && (max(max(wsd))==0)
- ef(2) = 1;
- end
- end
- if plotyn
- F = figure;
- A = axes;
- hold on;
- set(F,'Position',[65 75 600 780]);
- subplot(6,1,1); hold on; plot(VDs(1,end-50:end),'r'); plot(VDs(2,end-50:end),'b');
- if nd >= 3
- plot(VDs(3,end-50:end),'g');
- end
- subplot(6,1,2); hold on; plot(cue(1,end-50:end),'r:'); plot(rew(1,end-50:end),'r'); plot(cue(2,end-50:end),'b:'); plot(rew(2,end-50:end),'b');
- subplot(6,1,3); hold on; plot(CDtoS(1,end-50:end),'m'); plot(CDtoS(2,end-50:end),'c'); plot(sum(CDtoS(:,end-50:end),1),'k');
- subplot(6,1,4); hold on; plot([1:tmax],wbrs(1,:));
- subplot(6,1,5); hold on; plot([1:tmax],wbrs(2,:));
- %subplot(6,1,5); hold on; plot([1:ns],bds(:,1),'r'); plot([1:ns],wsd(1,:),'b'); plot([ns+1:2*ns],bds(:,2),'m'); plot([ns+1:2*ns],wsd(2,:),'c');
- subplot(6,1,6); hold on; plot([1:tmax],meanPs);
- end
OVRNNRB1probrew.m at commit 81d0d33, no license · at the source
Overview
- Physical and Health Education, Graduate School of Education, The University of Tokyo, Tokyo 113-0033, Japan
- International Research Center for Neurointelligence (WPI-IRCN), The University of Tokyo, Tokyo 113-0033, Japan
- Division of Computational Science and Technology, School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm SE-100 44, Sweden
- Science for Life Laboratory, Solna 17121, Sweden
Abstract
Mesocorticostriatal dopamine projections are crucial for value learning, motivational control, and cognitive functions. However, while dopamine's role in value learning as reward-prediction-error (RPE) has been much understood, precise roles in motivational control and cognitive functions remain more elusive. Computationally, this corresponds to that while the operation of mesostriatal dopamine could be minimally described by simple reinforcement learning (RL) models with one-dimensional reward/
Reproduced under the paper's license (CC BY), from the paper cited above.
Repository
Its files are read in the Code ↔ Paper reader above, with 2 matches between paragraphs and lines of code.
kenjimoritagithub/OVRNN-RB
81d0d336ef92ccd1557322262ec7f6031adcf3e8, 5 March 2026Availability: 1 check, the latest on 29 September 2026: the link answers
- 29 September 2026: the link answers
22 files
- FRRB1.m, MATLAB, 136 lines
- OVRNNRB1.m, MATLAB, 114 lines
- OVRNNRB1SDfixed.m, MATLAB, 114 lines
- OVRNNRB1SDplamani.m, MATLAB, 135 lines
- OVRNNRB1c.m, MATLAB, 117 lines
- OVRNNRB1mani.m, MATLAB, 129 lines
- OVRNNRB1probrew.m, MATLAB, 128 lines, 2 matches
- OVRNNRB1s2d2fixed.m, MATLAB, 122 lines
- OVRNNRB1wdev.m, MATLAB, 126 lines
- OVRNNRBdemo.m, MATLAB, 261 lines
- makeFig10.m, MATLAB, 257 lines
- makeFig11.m, MATLAB, 163 lines
- makeFig12.m, MATLAB, 141 lines
- makeFig13.m, MATLAB, 278 lines
- makeFig3-5.m, MATLAB, 307 lines
- makeFig6.m, MATLAB, 46 lines
- makeFig7.m, MATLAB, 111 lines
- makeFig8.m, MATLAB, 115 lines
- makeFig9.m, MATLAB, 290 lines
- meansemNaNomit.m, MATLAB, 10 lines
- setrandoms.m, MATLAB, 9 lines
- readme.txt, Text, 23 lines
Code accessibility
The codes for simulations and analyses are available at GitHub: https://
Reproduced under the paper's license (CC BY), from the paper cited above.
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 21 scripts, each with its path and the digest of its content;
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Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
No dataset and no data link were found in the paper.
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Version 1, 29 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 2 authors, 6 keywords, 11 MeSH terms, 2 funders, 121 references.
Cite
This paper
Morita, K., & Kumar, A. (2026). Mesocorticostriatal Reinforcement Learning of State Representation and Value with Implications for the Mechanisms of Schizophrenia. The Journal of neuroscience : the official journal of the Society for Neuroscience, 46(16), e1762252026. https://
BibTeX
@article{morita2026mesoc
author = {Morita, Kenji and Kumar, Arvind},
title = {{Mesocorticostriatal Reinforcement Learning of State Representation and Value with Implications for the Mechanisms of Schizophrenia}},
journal = {The Journal of neuroscience : the official journal of the Society for Neuroscience},
year = {2026},
month = apr,
volume = {46},
number = {16},
pages = {e1762252026},
publisher = {Society for Neuroscience},
issn = {0270-6474},
doi = {10.1523/
url = {https://
pmid = {41775629},
pmcid = {PMC13244656}
}
RIS
TY - JOUR
AU - Morita, Kenji
AU - Kumar, Arvind
TI - Mesocorticostriatal Reinforcement Learning of State Representation and Value with Implications for the Mechanisms of Schizophrenia
T2 - The Journal of neuroscience : the official journal of the Society for Neuroscience
J2 - J Neurosci
PY - 2026
DA - 2026/
VL - 46
IS - 16
SP - e1762252026
SN - 0270-6474
PB - Society for Neuroscience
DO - 10.1523/
UR - https://
LA - en
ER -
CSL-JSON
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"title": "Mesocorticostriatal Reinforcement Learning of State Representation and Value with Implications for the Mechanisms of Schizophrenia",
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"author": [
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"container-title-short":
"volume": "46",
"issue": "16",
"page": "e1762252026",
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"PMID": "41775629",
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"language": "en",
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}
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