OSCR

Locally synthesized glycyl aminoacyl-tRNA synthetase is important for local translation in neurons.

Code ↔ Paper

1 match between paragraphs of the paper and lines of its authors' code, computed by the harvester (lexical-v1). Click a colored paragraph or line to see its counterpart.

The 1 match
  1. [1] § Results › GARS1 protein is in proximity to tRNAGly in neurites ↔ probability density_v2_6_26_2025.py, lines 15–114 · score 0.60 · 0–20 um, neurite length, segments, proximal, distal, NS

Paper

Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC

The paper is loaded when this pane is shown.

The authors' code

Python · 126 lines · 5.3 KB · no license · 1 match

The registry keeps no copy of this file: its repository has no license, so its authors keep all their rights to it. Your browser shows it from its source, with JavaScript.

It can be read at the source: probability density_v2_6_26_2025.py.

Overview

Authors: Tyler Brent de Leon1, Adi Golani-Armon1, Bar Cohen1, Yoav S Arava1
ORCID iDs: Yoav S Arava
  1. Faculty of Biology, Technion – Israel Institute of Technology, Haifa, Israel
Journal: Life science alliance, volume 9, issue 6, article e202603630
Dates: received 13 January 2026; accepted 27 March 2026; published online 15 April 2026; in print June 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.26508/lsa.202603630 · PMID 41986236 · PMCID PMC13084160 · OpenAlex W7154528649
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: human (organism), mouse (organism), cellular / molecular (subfield)
Methods: Evoked potentials
MeSH: Glycine-tRNA Ligase*, Neurons*, Protein Biosynthesis*, Animals, Humans, Mice, Mitochondria, Neurites, Ribosomes, RNA, Messenger (* major topic)
Topic: RNA and protein synthesis mechanisms (Molecular Biology, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: Israel Science Foundation (748/23 and 1349/23)
Citations: not cited yet (Europe PMC); 83 references in the paper

Abstract

Regulation of gene expression is essential for neuronal development and function. A prominent regulatory mechanism involves synthesis of proteins at their activity site. Such local protein synthesis enables neurons to respond rapidly and tightly to stimuli. Key components of the translation machinery, including mRNA and ribosomes, were identified in subcellular regions of neurons. Yet, the role of tRNAs and their charging enzymes, aminoacyl-tRNA synthetases (ARS), in this process remains largely unclear. Here, we demonstrate that glycyl-tRNA synthetase (Gars1) mRNA is abundant in neurites and undergoes local translation, producing GARS1 protein. Notably, Gars1 mRNA colocalizes with mitochondria in a translation-dependent manner, with its coding sequence (CDS) sufficient to direct this association. The localized GARS1 protein is in close proximity to tRNAGly, and disrupting their proximity impairs local protein synthesis in neurites. These findings establish the functional importance of GARS1 and tRNAGly in neuritic translation and highlight mitochondria as hubs for mRNA transport and translation.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repository

Its files are read in the Code ↔ Paper reader above, with 1 match between paragraphs and lines of code.

tylerbrent/gars1-

License: none: the authors keep all their rights
State: the link answers, verified on 29 September 2026
Evidence: files inventoried
Commit: 6b90b016099ccc61cb5c34aaf408a55394c52902, 2 March 2026
Languages: Python (3)
Size: 5 files, 3 scripts
Software Heritage: not archived
Found in: “Data Availability”
Holds: README
Not found: license file, CITATION.cff, environment file, tests, continuous integration, documentation
Tools: NumPy (3 files), pandas (3 files), tifffile (2 files)
Availability: 1 check, the latest on 29 September 2026: the link answers
  • 29 September 2026: the link answers
4 files, not copied: shown from their source

OSCR keeps no copy of these files: this repository has no license that allows it. The reader above shows each one from its source, fetched by your browser at commit 6b90b01, when its fingerprint is the one OSCR verified. How this works.

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 3 scripts, each with its path and the digest of its content;
  • 1 match between paragraphs of the paper and lines of the code (method lexical-v1);
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

Data Availability

Raw images are deposited in Zenodo (https://doi.org/10.6084/m9.figshare.31449445) and codes used for analysis in GitHub (https://github.com/tylerbrent/Gars1-/tree/main).

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 29 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 4 authors, 10 MeSH terms, 1 funder, 82 references.

Cite

This paper

de Leon, T. B., Golani-Armon, A., Cohen, B., & Arava, Y. S. (2026). Locally synthesized glycyl aminoacyl-tRNA synthetase is important for local translation in neurons. Life science alliance, 9(6), e202603630. https://doi.org/10.26508/lsa.202603630

BibTeX

@article{deleon2026locally,
author = {de Leon, Tyler Brent and Golani-Armon, Adi and Cohen, Bar and Arava, Yoav S},
title = {{Locally synthesized glycyl aminoacyl-tRNA synthetase is important for local translation in neurons}},
journal = {Life science alliance},
year = {2026},
month = apr,
volume = {9},
number = {6},
pages = {e202603630},
publisher = {Life Science Alliance LLC},
issn = {2575-1077},
doi = {10.26508/lsa.202603630},
url = {https://doi.org/10.26508/lsa.202603630},
pmid = {41986236},
pmcid = {PMC13084160}
}

RIS

TY - JOUR
AU - de Leon, Tyler Brent
AU - Golani-Armon, Adi
AU - Cohen, Bar
AU - Arava, Yoav S
TI - Locally synthesized glycyl aminoacyl-tRNA synthetase is important for local translation in neurons
T2 - Life science alliance
J2 - Life Sci Alliance
PY - 2026
DA - 2026/04/15
VL - 9
IS - 6
SP - e202603630
SN - 2575-1077
PB - Life Science Alliance LLC
DO - 10.26508/lsa.202603630
UR - https://doi.org/10.26508/lsa.202603630
LA - en
ER -

CSL-JSON

{
"id": "10.26508/lsa.202603630",
"type": "article-journal",
"title": "Locally synthesized glycyl aminoacyl-tRNA synthetase is important for local translation in neurons",
"container-title": "Life science alliance",
"author": [
{
"family": "de Leon",
"given": "Tyler Brent"
},
{
"family": "Golani-Armon",
"given": "Adi"
},
{
"family": "Cohen",
"given": "Bar"
},
{
"family": "Arava",
"given": "Yoav S"
}
],
"container-title-short": "Life Sci Alliance",
"volume": "9",
"issue": "6",
"page": "e202603630",
"DOI": "10.26508/lsa.202603630",
"PMID": "41986236",
"PMCID": "PMC13084160",
"ISSN": "2575-1077",
"publisher": "Life Science Alliance LLC",
"URL": "https://doi.org/10.26508/lsa.202603630",
"language": "en",
"issued": {
"date-parts": [
[
2026,
4,
15
]
]
}
}

The tracing map gets a citation of its own once an author has validated it and it has a DOI.

Similar papers

The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.

[1] doi:10.1002/advs.77115
RNA Promotes Synapsin Condensates That Organize Synaptic Vesicles in Live Neurons and Enable Localized Translation in Reconstituted System.
Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)
In common: cellular / molecular, 9 references
[2] doi:10.1038/s44319-026-00766-9
Proteolytic cleavage of G3BP1 by calpain 1 couples NMDAR activation to mTOR-dependent local translation.
Journal: EMBO reports
In common: mouse, cellular / molecular, 4 references
[3] doi:10.1261/rna.080954.126 [code]
Neuronal subtype-specific ribosomal protein mRNA expression.
Journal: RNA (New York, N.Y.)
In common: pandas, NumPy, mouse, cellular / molecular, 3 references
[4] doi:10.1126/sciadv.aea0755
Schizophrenia risk gene ZNF804A controls ribosome localization and synaptogenesis in developing human neurons.
Journal: Science advances
In common: cellular / molecular, 3 references
[5] doi:10.3390/antiox15050608
CSDE1 Associates with TOM20 and Mitochondrial Protein-Encoding mRNAs in Sensory Neurons.
Journal: Antioxidants (Basel, Switzerland)
In common: cellular / molecular, 3 references
[6] doi:10.1007/s12021-026-09815-z [code]
BasNet: Attention U-Net-Based Automated Axon Segmentation in Bielschowsky Silver-Stained Histology.
Journal: Neuroinformatics
In common: tifffile, pandas, NumPy, 1 reference
[7] doi:10.1038/s41467-026-71720-5 [code]
RESCUE: recovery of unattributed expression patterns in spatial transcriptomics.
Journal: Nature communications
In common: cellular / molecular, 3 references
[8] doi:10.1038/s41467-026-75571-y [code]
Ribo-ITP enables identification of translons from limited input samples.
Journal: Nature communications
In common: pandas, NumPy, mouse, 2 references
[9] doi:10.1038/s41598-026-57519-w [code]
Automated segmentation of neurons and spinal cord structures in immunofluorescence images using SpineDL.
Journal: Scientific reports
In common: tifffile, pandas, NumPy, mouse, 1 reference
[10] doi:10.1038/s41467-026-73476-4 [code]
Developmental molecular signatures define de novo cortico-brainstem circuit for skilled forelimb movement.
Journal: Nature communications
In common: tifffile, pandas, NumPy, mouse, 1 reference

Contribute

The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Request its removal

To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).

Discussion, reproductions, activity

Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.

Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.

Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.