OSCR

Reproducibility of in vivo electrophysiological measurements in mice.

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int-brain-lab/paper-reproducible-ephys

License: MIT
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figshare 19705522

License: CC-BY-4.0
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figshare 19694452

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SWC-Advanced-Microscopy/BakingTray

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SainsburyWellcomeCentre/lasagna

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SWC-Advanced-Microscopy/StitchIt

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cortex-lab/alyx

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stevenjwest/brainregister

License: GPL-3.0
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Tools found in the code: AllenSDK, h5py, PyTorch Lightning, Image Processing Toolbox, Parallel Computing Toolbox, Statistics and Machine Learning Toolbox, Matplotlib, NiBabel, Numba, NumPy, pandas, Phy, Pillow, PyTorch, scikit-image, scikit-learn, SciPy, seaborn, SimpleITK, statsmodels, tifffile, UMAP

Overview

Authors: International Brain Laboratory, Kush Banga, Julius Benson, Jai Bhagat, Dan Biderman, Daniel Birman, Niccolò Bonacchi, Sebastian A Bruijns, Kelly Buchanan, Robert AA Campbell, Matteo Carandini, Gaelle A Chapuis, Anne K Churchland, M Felicia Davatolhagh, Hyun Dong Lee, Mayo Faulkner, Berk Gerçek, Fei Hu, Julia Huntenburg, Cole Lincoln Hurwitz
and 26 other authorsAnup Khanal, Christopher Krasniak, Petrina Lau, Christopher Langfield, Nancy Mackenzie, Guido T Meijer, Nathaniel J Miska, Zeinab Mohammadi, Jean-Paul Noel, Liam Paninski, Alejandro Pan-Vazquez, Cyrille Rossant, Noam Roth, Michael Schartner, Karolina Z Socha, Nicholas A Steinmetz, Karel Svoboda, Marsa Taheri, Anne E Urai, Shuqi Wang, Miles Wells, Steven J West, Matthew R Whiteway, Olivier Winter, Ilana B Witten, Yizi Zhang
Journal: eLife
Published: 12 May 2025
Type: Research article
Status: code verified (how the code is found and verified)
DOI: 10.7554/elife.100840
License: CC BY
Institutions: University College London (United Kingdom), New York University (United States), Columbia University (United States), University of Washington (United States), ISPA - Instituto Universitário (Portugal), Max Planck Society (Germany), Sainsbury Wellcome Centre (United Kingdom), University of Geneva (Switzerland), University of California, Los Angeles (United States), University of California, Berkeley (United States), Champalimaud Foundation (Portugal), Cold Spring Harbor Laboratory (United States), Princeton University (United States), Allen Institute for Neural Dynamics (United States), Leiden University (Netherlands), École Polytechnique Fédérale de Lausanne (Switzerland)
Categories: extracellular electrophysiology (units, LFP) (modality), mouse (organism)

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