OSCR

extracellular electrophysiology (units, LFP)

Modality: 65 papers with a page, 51 of them with their authors' code.

Friday, 25 September 2026 (1 paper)

[1] Code ↔ Paper doi:10.7554/elife.110588 [paper, repository]
Opening the black box toward a modular approach to spike sorting.
Journal: eLife
Status: code verified, 672 files readable, 23 matches

Monday, 21 September 2026 (1 paper)

[2] Code ↔ Paper doi:10.7554/elife.106554 [paper, repository]
Enhanced tactile coding in rat neocortex under darkness.
Journal: eLife
Status: code verified, 9 files readable, 2 matches

Wednesday, 16 September 2026 (1 paper)

[3] Code ↔ Paper doi:10.1038/s41531-026-01531-4 [paper, repository]
Inconsistent subthalamic local field potential beta activity amid in- and antiphasic neuronal bursts.
Journal: NPJ Parkinson's disease
Authors' code: MaximilianScherer/2026_MS_beta_prevalence (no license), Zenodo 17951551 (CC-BY-4.0), Zenodo 17940236 (CC-BY-4.0)
Status: code verified, 72 files readable, 3 matches

Wednesday, 2 September 2026 (2 papers)

[4] Code ↔ Paper doi:10.1038/s42003-026-10881-x [paper, repository]
On variability in local field potentials.
Journal: Communications biology
Authors' code: Zenodo 21959626 (MIT), Mohsenparto/On_ATV_in_LFP (MIT)
Status: code verified, 14 files readable, 3 matches
[5] Code ↔ Paper doi:10.1523/jneurosci.0295-26.2026 [paper, repository]
Detection and Removal of Hyper-synchronous Artifacts in Massively Parallel Spike Recordings.
Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience
Authors' code: doi:10.12751/incf.ni2018.0019 (no license)
Status: code verified

Thursday, 27 August 2026 (1 paper)

[6] Code ↔ Paper doi:10.1016/j.cnp.2026.08.008 [paper, repository]
Subthalamic beta activity and neuroimaging concordance in deep brain stimulation: electrode placement and clinical outcomes.
Journal: Clinical neurophysiology practice
Authors' code: compneurobilbao/stn-beta-analysis (no license)
Status: code verified, 5 files readable

Wednesday, 12 August 2026 (1 paper)

[7] Code ↔ Paper doi:10.1523/jneurosci.2001-25.2026 [paper, repository]
Dynamics of Dentate Gyrus Place Cells and Dentate Spikes during Spatial and Nonspatial Changes in Environments.
Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience
Authors' code: Julie-Fabre/bombcell (GPL-3.0), ColginLab/Demetrovich_Colgin_2026 (no license), ColginLab/ColginLabCode (no license)
Status: code verified, 1,503 files readable, 19 matches

Tuesday, 11 August 2026 (1 paper)

[8] Code ↔ Paper doi:10.3390/ani16162494 [paper, repository]
Categorical Representation of Numerosity in the Pigeon Entopallium: Coding Format and Temporal Dynamics.
Journal: Animals : an open access journal from MDPI
Authors' code: BrainSystemsLab/Data_and_Code_for_ENTO (no license)
Status: code verified, 11 files readable, 1 match

Monday, 10 August 2026 (1 paper)

[9] Code ↔ Paper doi:10.1371/journal.pcbi.1014615 [paper, repository]
Toward reliable machine learning models for neural circuit inference: A diagnostic study of CNNs on spike trains.
Journal: PLoS computational biology
Status: code verified, 28 files readable, 18 matches

Friday, 7 August 2026 (1 paper)

[10] Code ↔ Paper doi:10.1007/s00422-026-01048-2 [paper, repository]
A quality measure for repeating multiple-unit spike patterns.
Journal: Biological cybernetics
Authors' code: Zenodo 18424512 (CC-BY-4.0)
Status: code verified, 5 files readable, 1 match

Thursday, 6 August 2026 (1 paper)

[11] Code ↔ Paper doi:10.1002/advs.202519893 [paper, repository]
NeuroSuite for Long-Term Functional and Structural Studies of Air-Liquid Interface Cerebral Organoids.
Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)
Authors' code: BelNeuroCoding/NeuroMaps (MIT), madlancaster/Neuroweb (no license), Zenodo 19120269 (CC-BY-4.0)
Status: code verified, 1,714 files readable, 11 matches

Wednesday, 5 August 2026 (1 paper)

[12] Code ↔ Paper doi:10.7554/elife.110170 [paper, repository]
Efficient and reproducible pipelines for spike sorting large-scale electrophysiology data.
Journal: eLife
Status: code verified, 96 files readable, 4 matches

Saturday, 1 August 2026 (3 papers)

[13] doi:10.1111/ejn.70641 [paper, data]
Distinct High-Gamma Signals in Primate Prefrontal Cortex Differentiate Cue Information, Preference Revision, and Expected Reward During Value-Based Decisions.
Journal: The European journal of neuroscience
Status: data only, 2 datasets cited
[14] doi:10.1093/toxsci/kfag094 [paper, data]
Building structure activity relationships to avoid toxicity due to unwanted central nervous system ion channel activity.
Journal: Toxicological sciences : an official journal of the Society of Toxicology
Status: data only, 2 datasets cited
[15] Code ↔ Paper doi:10.1093/bioinformatics/btag570 [paper, repository]
CASCADE: criticality avalanche spike cross-platform analysis detection engine, a multi-manufacturer MEA bash analysis pipeline.
Journal: Bioinformatics (Oxford, England)
Authors' code: Zenodo 20840795 (Apache-2.0)
Status: code verified, 27 files readable, 10 matches

Friday, 31 July 2026 (1 paper)

[16] Code ↔ Paper doi:10.1016/j.celrep.2026.117782 [paper, repository]
Thermodynamics of consciousness: Non-equilibrium brain dynamics track conscious states.
Journal: Cell reports
Status: code verified, 28 files readable, 8 matches

Thursday, 30 July 2026 (1 paper)

[17] Code ↔ Paper doi:10.7554/elife.103046 [paper, repository]
Dichotomy between extracellular signatures of active dendritic chemical synapses and gap junctions.
Journal: eLife
Authors' code: Zenodo 21312084 (CC-BY-4.0), supp:PMC13423354/elife-103046-code1.zip (no license)
Status: code verified, 154 files readable, 4 matches

Saturday, 25 July 2026 (1 paper)

[18] doi:10.3390/bios16080405 [paper]
A Low-Power PLL-Less Wideband OOK Wireless Neural-Signal Transmitter for Miniaturized Neural Interfaces with In Vivo Validation in Freely Moving Mice.
Journal: Biosensors
Status: code on request

Friday, 24 July 2026 (1 paper)

[19] Code ↔ Paper doi:10.1038/s41467-026-75492-w [paper, repository]
Place and behavioral modulation of hippocampal neurons during immobility.
Journal: Nature communications
Authors' code: BurgalossiPublic/HP-BehModulation (no license)
Status: code verified, 19 files readable, 23 matches

Tuesday, 21 July 2026 (2 papers)

[20] doi:10.1038/s41467-026-75826-8 [paper, data]
Transcranial focused ultrasound modulates spiking, LFP, and BOLD activity in the primate thalamus.
Journal: Nature communications
Status: data only, 2 datasets cited
[21] doi:10.1016/j.isci.2026.116784 [paper, data]
Age-dependent axonal dysfunctions and altered sharp-wave ripple oscillations in <i>Scn1a</i> <sup><i>+/-</i></sup> mice.
Journal: iScience
Status: code on request, 1 dataset cited

Tuesday, 14 July 2026 (1 paper)

[22] doi:10.1088/1741-2552/ae805e [paper, data]
Human intracranial signal stability tracks anatomical accuracy after electrode reimplantation.
Journal: Journal of neural engineering
Status: data only, 1 dataset cited

Monday, 13 July 2026 (1 paper)

[23] doi:10.1186/s41016-026-00441-x [paper, data]
Advances in local field potential research in prolonged disorders of consciousness: a narrative review.
Journal: Chinese neurosurgical journal
Status: data only, 1 dataset cited

Wednesday, 8 July 2026 (1 paper)

[24] Code ↔ Paper doi:10.1523/jneurosci.1594-25.2026 [paper, repository]
KIASORT: Knowledge-Integrated Automated Spike Sorting for Geometry-Free Neuron Tracking.
Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience
Authors' code: kiasort.com (no license)
Status: code verified

Saturday, 4 July 2026 (1 paper)

[25] doi:10.3390/biology15131074 [paper]
The Distinct Electrophysiological Mechanisms in the Cortico-Striatal Circuit of LID Rats.
Journal: Biology
Status: code on request

Wednesday, 24 June 2026 (1 paper)

[26] Code ↔ Paper doi:10.1038/s41467-026-74243-1 [paper, repository]
Spiking neural network decoders of finger forces from high-density intramuscular microelectrode arrays.
Journal: Nature communications
Authors' code: FarahBaracat/snn-fingerforce-decoding (no license), Zenodo 19724261 (CC-BY-4.0)
Status: code verified, 114 files readable, 14 matches

Tuesday, 23 June 2026 (1 paper)

[27] Code ↔ Paper doi:10.1371/journal.pbio.3003818 [paper, repository]
Human neuronal firing varies with the frequency of local field potential oscillations.
Journal: PLoS biology
Authors' code: Zenodo 19860065 (CC-BY-4.0)
Status: code verified, 2,005 files readable, 1 match

Monday, 22 June 2026 (1 paper)

[28] Code ↔ Paper doi:10.1371/journal.pbio.3003873 [paper, repository]
Distinct sources of decision-related signals in visual cortex are represented in different local field potential bands.
Journal: PLoS biology
Status: code verified, 38 files readable, 8 matches

Wednesday, 17 June 2026 (1 paper)

[29] Code ↔ Paper doi:10.1016/j.patter.2026.101590 [paper, repository]
Density-based longitudinal neuron tracking in high-density electrophysiological recordings.
Journal: Patterns (New York, N.Y.)
Authors' code: cortex-lab/phy (BSD-3-Clause), jiumao2/PhyWaveformPlugin (GPL-3.0), jiumao2/AutoCurationKilosort (GPL-3.0), jiumao2/DANT_UI (GPL-3.0), EnnyvanBeest/UnitMatch (CC-BY-NC-SA-4.0), Zenodo 19973060 (GPL-2.0), Zenodo 20021262 (GPL-3.0), Zenodo 19973259 (GPL-3.0), Zenodo 19972266 (GPL-3.0), Zenodo 19972858 (GPL-3.0), Zenodo 19973154 (GPL-3.0)
Status: code verified, 1,027 files readable, 18 matches

Monday, 15 June 2026 (1 paper)

[30] Code ↔ Paper doi:10.3389/fnins.2026.1852774 [paper, repository]
Spatial transcriptomics on an expanded dataset at the brain-electrode interface: exploration of variability and identification of novel biomarkers.
Journal: Frontiers in neuroscience
Authors' code: msureil/SpatioBiomarker (no license)
Status: code verified, 14 files readable, 4 matches

Saturday, 13 June 2026 (1 paper)

[31] doi:10.1186/s10194-026-02399-8 [paper]
Early life stress induces brain-wide electrical network predisposition to migraine.
Journal: The journal of headache and pain
Status: code on request

Thursday, 11 June 2026 (1 paper)

[32] Code ↔ Paper doi:10.1016/j.crmeth.2026.101481 [paper, repository]
A hybrid micro-ECoG for functionally targeted multi-site and multi-scale investigation.
Journal: Cell reports methods
Authors' code: dataverse.harvard.edu/dataverse/hybridecog (no license), Zenodo 20089744 (CC-BY-4.0)
Status: code verified, 24 files readable, 9 matches

Tuesday, 9 June 2026 (1 paper)

[33] Code ↔ Paper doi:10.1073/pnas.2603966123 [paper, repository]
Oxytocin selectively biases sensory-prefrontal communication through network-level suppression and theta coupling.
Journal: Proceedings of the National Academy of Sciences of the United States of America
Authors' code: jeelabKIST/Oxytocin-LFP (no license)
Status: code verified, 10 files readable, 5 matches

Saturday, 6 June 2026 (1 paper)

[34] Code ↔ Paper doi:10.1016/j.celrep.2026.117505 [paper, repository]
Impaired spatial coding and neuronal hyperactivity in the medial entorhinal cortex of aged APP knock-in mice.
Journal: Cell reports
Authors' code: Zenodo 19040105 (CC-BY-4.0), klusta-team/klustakwik (no license), glmmTMB/glmmTMB (no license), florianhartig/DHARMa (gnu), hussainilab/rodriguez-et-al-cell-reports-2026 (no license)
Status: code verified, 365 files readable, 2 matches

Friday, 5 June 2026 (1 paper)

[35] Code ↔ Paper doi:10.21769/bioprotoc.5708 [paper, repository]
Measuring Electrophysiological Activity in Acute Brain Slices, Spheroids, and Organoids Using 3D High-Density Multielectrode Arrays.
Journal: Bio-protocol
Authors' code: Zenodo 13908319 (no license)
Status: code verified, 1 file readable

Wednesday, 3 June 2026 (3 papers)

[36] Code ↔ Paper doi:10.1126/sciadv.adz9893 [paper, repository]
Hippocampal place cells map terrain geometry independently of behavior.
Journal: Science advances
Authors' code: Neuroesc/Hillscape_analyses (MIT)
Status: code verified, 93 files readable, 15 matches
[37] Code ↔ Paper doi:10.1523/eneuro.0432-25.2026 [paper, repository]
Seize the Data: A User-Friendly GUI for High-Resolution Analysis of Seizure Dynamics in HD-MEA Recordings.
Journal: eNeuro
Authors' code: shorturl.at/vlegn (no license)
Status: code verified
[38] Code ↔ Paper doi:10.1186/s13195-026-02103-7 [paper, repository]
BIN1 gain-of-function in the presynaptic compartment leads to isoform-specific synaptotoxicity.
Journal: Alzheimer's research & therapy
Authors' code: yger/pre-post-drive (no license)
Status: code verified, 6 files readable

Monday, 1 June 2026 (1 paper)

[39] Code ↔ Paper doi:10.1038/s41592-026-03076-z [paper, repository]
Neuropixels Opto: combining high-resolution electrophysiology and optogenetics.
Journal: Nature methods
Authors' code: spkware/spks (no license), AllenInstitute/MIES (BSD-2-Clause), codeocean.allenneuraldynamics.org/capsule/1593868 (no license)
Status: code verified, 69 files readable, 5 matches

Thursday, 28 May 2026 (2 papers)

[40] Code ↔ Paper doi:10.1038/s41467-026-73790-x [paper, repository]
An artefact-resilient wide bandwidth bidirectional graphene neural interface.
Journal: Nature communications
Authors' code: aguimera/PhyREC (no license)
Status: code verified, 52 files readable, 3 matches
[41] Code ↔ Paper doi:10.1016/j.celrep.2026.117420 [paper, repository]
Neural population dynamics of direct electrical stimulation of neocortex.
Journal: Cell reports
Status: code verified, 642 files readable, 7 matches

Wednesday, 27 May 2026 (1 paper)

[42] doi:10.1038/s41398-026-04086-3 [paper]
Hippocampal rhythm modulation via frequency-tuned trigeminal nerve stimulation.
Journal: Translational psychiatry
Status: code on request

Tuesday, 26 May 2026 (1 paper)

[43] Code ↔ Paper doi:10.1371/journal.pcbi.1013488 [paper, repository]
Evaluating place cell detection methods in Rats and Humans: Implications for cross-species spatial coding.
Journal: PLoS computational biology
Authors' code: HSNPipeline/PlaceCellMethods (no license), HSNPipeline/SimPlaceCells (MIT), HSNPipeline (no license), spiketools/spiketools (Apache-2.0), lisc-tools/lisc (Apache-2.0)
Status: code verified, 280 files readable, 2 matches

Thursday, 21 May 2026 (1 paper)

[44] doi:10.34133/cbsystems.0566 [paper]
A Dual-Mode Wireless Microsystem for Monitoring Dopamine and Spike Changes with Dexmedetomidine.
Journal: Cyborg and bionic systems (Washington, D.C.)
Status: code on request

Tuesday, 19 May 2026 (1 paper)

[45] Code ↔ Paper doi:10.1038/s41467-026-73106-z [paper, repository]
Respiratory pauses highlight sleep architecture in mice.
Journal: Nature communications
Authors' code: buzsakilab/buzcode (GPL-3.0), RouxLaboratory/Casali_2026 (MIT)
Status: code verified, 2,067 files readable, 23 matches

Tuesday, 12 May 2026 (1 paper)

[46] Code ↔ Paper doi:10.1088/1741-2552/ae5f4b [paper, repository]
logLIRA: a method for reliable suppression of electrical stimulation artifacts enabling short-latency neural response recovery.
Journal: Journal of neural engineering
Authors' code: barbaLab/logLIRA (no license), barbaLab/logLIRA-benchmark (no license)
Status: code verified, 45 files readable, 7 matches

Monday, 11 May 2026 (1 paper)

[47] Code ↔ Paper doi:10.3389/fnins.2026.1816533 [paper, repository]
LFP-LOC: an LFP power-based method for validating the anatomical placement of high-density neural probes in rodents.
Journal: Frontiers in neuroscience
Authors' code: raffaele222/LFP-LOC (MIT)
Status: code verified, 7 files readable, 13 matches

Friday, 8 May 2026 (3 papers)

[48] Code ↔ Paper doi:10.1523/eneuro.0176-24.2026 [paper, repository]
Cell Density Impacts Population Activity in Human iPSC-Derived Neural Networks.
Journal: eNeuro
Authors' code: krishnanURMC/Uzun_eNeuro_2026 (no license)
Status: dead link
[49] Code ↔ Paper doi:10.1038/s41467-026-72620-4 [paper, repository]
Grid maps are disrupted after large-scale arena expansion and recover with experience.
Journal: Nature communications
Status: code verified, 1,184 files readable, 8 matches
[50] Code ↔ Paper doi:10.1038/s41531-026-01380-1 [paper, repository]
Identifying maximal beta power from directional subthalamic local field potentials in Parkinson's disease.
Journal: NPJ Parkinson's disease
Status: code verified, 3 files readable, 1 match

Thursday, 7 May 2026 (1 paper)

[51] doi:10.1136/bmjopen-2026-117391 [paper]
Prospective multi-phase observational study evaluating local field potentials to guide deep brain stimulation programming in dystonia at a UK Tertiary Neurosciences Centre (LFP-DYT): a protocol.
Journal: BMJ open
Status: code on request

Wednesday, 6 May 2026 (2 papers)

[52] Code ↔ Paper doi:10.1038/s41586-026-10448-0 [paper, repository]
Plasticity and language in the anaesthetized human hippocampus.
Journal: Nature
Authors' code: evarol/DREDge (MIT), NuttidaLab/rnn_oddball (Apache-2.0)
Status: code verified, 57 files readable, 9 matches
[53] doi:10.1186/s13062-026-00778-4 [paper, data]
Multi-omics analysis of deep brain stimulation associated with brain-gut axis modulation and symptom amelioration in a Parkinson's disease mouse model.
Journal: Biology direct
Status: data only, 1 dataset cited

Saturday, 2 May 2026 (1 paper)

[54] Code ↔ Paper doi:10.1038/s41540-026-00730-2 [paper, repository]
Sometimes extracellular recordings fail for good reasons.
Journal: NPJ systems biology and applications
Authors' code: Zenodo 18198916 (CC-BY-4.0)
Status: code verified, 41 files readable, 12 matches

Friday, 1 May 2026 (1 paper)

[55] doi:10.1186/s12915-026-02605-8 [paper, data]
Role of neuronal oscillations in memory driven visual processing.
Journal: BMC biology
Status: data only, 1 dataset cited

Tuesday, 21 April 2026 (2 papers)

[56] Code ↔ Paper doi:10.7554/elife.109883 [paper, repository]
Prior cocaine use disrupts identification of hidden states by single units and neural ensembles in orbitofrontal cortex.
Journal: eLife
Authors' code: OSF azvhm (no license)
Status: code verified, 216 files readable, 7 matches
[57] Code ↔ Paper doi:10.1038/s41467-026-71502-z [paper, repository]
Neurons of the human subthalamic nucleus engage with local delta frequency processes during action cancellation.
Journal: Nature communications
Status: code verified, 896 files readable, 39 matches

Friday, 17 April 2026 (2 papers)

[58] Code ↔ Paper doi:10.1126/sciadv.aea1927 [paper, repository]
An evolutionary conserved neural mechanism for interpersonal coordination in primates.
Journal: Science advances
Authors' code: readout.info (no license), Zenodo 18743721 (CC-BY-4.0)
Status: code verified, 23 files readable, 10 matches
[59] Code ↔ Paper doi:10.1038/s41467-026-71724-1 [paper, repository]
Dynamics of oscillatory power support the integration of perceptual and mnemonic information within the premotor cortex.
Journal: Nature communications
Authors' code: OSF 5jexn (no license)
Status: code verified, 1 file readable

Wednesday, 15 April 2026 (1 paper)

[60] Code ↔ Paper doi:10.1038/s41467-026-71331-0 [paper, repository]
A multimodal approach for visualizing and identifying electrophysiological cell types in vivo.
Journal: Nature communications
Authors' code: EricKenjiLee/PhysMAP_Manuscript (no license), Zenodo 18239113 (CC-BY-4.0)
Status: code verified, 24 files readable, 8 matches

Monday, 13 April 2026 (1 paper)

[61] Code ↔ Paper doi:10.1038/s41467-026-71443-7 [paper, repository]
Large-scale single-neuron recording in the human cortex using an ultra-flexible electrode array.
Journal: Nature communications
Authors' code: Zenodo 18774630 (CC-BY-4.0)
Status: code verified, 13 files readable, 7 matches

Thursday, 9 April 2026 (1 paper)

[62] Code ↔ Paper doi:10.1113/jp290593 [paper, repository]
Machine-learning classification of motor unit types in the adult mouse.
Journal: The Journal of physiology
Authors' code: Zenodo 18896999 (GPL-3.0)
Status: code verified

Thursday, 2 April 2026 (1 paper)

[63] Code ↔ Paper doi:10.1016/j.stemcr.2026.102872 [paper, repository]
A semi-automated MEA spike sorting method for high-throughput assessment of cultured neurons.
Journal: Stem cell reports
Status: code verified, 76 files readable, 5 matches

Wednesday, 1 April 2026 (2 papers)

[64] Code ↔ Paper doi:10.1038/s41586-026-10331-y [paper, repository]
Active dissociation of intracortical spiking and high gamma activity.
Journal: Nature
Authors' code: abidlabs/contrastive (MIT), caraido/spike-highgamma (CC-BY-4.0)
Status: code verified, 27 files readable, 6 matches
[65] Code ↔ Paper doi:10.3389/fnins.2026.1605209 [paper, repository]
Spiking neural networks provide accurate and time-efficient models for whisker stimulus classification of the awake mouse.
Journal: Frontiers in neuroscience
Authors' code: IGITUGraz/LSM (GPL-3.0), gitlab.rlp.net/salbrec/sdrpml (no license)
Status: code verified, 21 files readable, 3 matches