extracellular electrophysiology (units, LFP)
Modality: 65 papers with a page, 51 of them with their authors' code.
Friday, 25 September 2026 (1 paper)
- [1] Code ↔ Paper doi:10.7554/
elife.110588 [paper, repository] - Opening the black box toward a modular approach to spike sorting.Journal: eLifeAuthors' code: Zenodo 20407862 (CC-BY-4.0), SpikeInterface/
sorting_components_bench (MIT), SpikeInterface/mark_paper spikeinterface (MIT)Status: code verified, 672 files readable, 23 matches
Monday, 21 September 2026 (1 paper)
- [2] Code ↔ Paper doi:10.7554/
elife.106554 [paper, repository] - Enhanced tactile coding in rat neocortex under darkness.Journal: eLifeAuthors' code: UT-yakusaku/
Yamashiro-eLife-2024 (MIT)Status: code verified, 9 files readable, 2 matches
Wednesday, 16 September 2026 (1 paper)
- [3] Code ↔ Paper doi:10.1038/
s41531-026-01531-4 [paper, repository] - Inconsistent subthalamic local field potential beta activity amid in- and antiphasic neuronal bursts.Journal: NPJ Parkinson's diseaseAuthors' code: MaximilianScherer/
2026_MS_beta_prevalence (no license), Zenodo 17951551 (CC-BY-4.0), Zenodo 17940236 (CC-BY-4.0)Status: code verified, 72 files readable, 3 matches
Wednesday, 2 September 2026 (2 papers)
- [4] Code ↔ Paper doi:10.1038/
s42003-026-10881-x [paper, repository] - On variability in local field potentials.Journal: Communications biologyStatus: code verified, 14 files readable, 3 matches
- [5] Code ↔ Paper doi:10.1523/
jneurosci.0295-26.2026 [paper, repository] - Detection and Removal of Hyper-synchronous Artifacts in Massively Parallel Spike Recordings.Journal: The Journal of neuroscience : the official journal of the Society for NeuroscienceAuthors' code: doi:10.12751/
incf.ni2018.0019 (no license)Status: code verified
Thursday, 27 August 2026 (1 paper)
- [6] Code ↔ Paper doi:10.1016/
j.cnp.2026.08.008 [paper, repository] - Subthalamic beta activity and neuroimaging concordance in deep brain stimulation: electrode placement and clinical outcomes.Journal: Clinical neurophysiology practiceAuthors' code: compneurobilbao/
stn-beta-analysis (no license)Status: code verified, 5 files readable
Wednesday, 12 August 2026 (1 paper)
- [7] Code ↔ Paper doi:10.1523/
jneurosci.2001-25.2026 [paper, repository] - Dynamics of Dentate Gyrus Place Cells and Dentate Spikes during Spatial and Nonspatial Changes in Environments.Journal: The Journal of neuroscience : the official journal of the Society for NeuroscienceAuthors' code: Julie-Fabre/
bombcell (GPL-3.0), ColginLab/Demetrovich_Colgin_2026 (no license), ColginLab/ColginLabCode (no license)Status: code verified, 1,503 files readable, 19 matches
Tuesday, 11 August 2026 (1 paper)
- [8] Code ↔ Paper doi:10.3390/
ani16162494 [paper, repository] - Categorical Representation of Numerosity in the Pigeon Entopallium: Coding Format and Temporal Dynamics.Journal: Animals : an open access journal from MDPIAuthors' code: BrainSystemsLab/
Data_and_Code_for_ENTO (no license)Status: code verified, 11 files readable, 1 match
Monday, 10 August 2026 (1 paper)
- [9] Code ↔ Paper doi:10.1371/
journal.pcbi.1014615 [paper, repository] - Toward reliable machine learning models for neural circuit inference: A diagnostic study of CNNs on spike trains.Journal: PLoS computational biologyAuthors' code: XiaoqianSun0104/
OmniCNN_Infer_Connectivi (no license), shigerushinomoto/ty CoNNECT (MIT)Status: code verified, 28 files readable, 18 matches
Friday, 7 August 2026 (1 paper)
- [10] Code ↔ Paper doi:10.1007/
s00422-026-01048-2 [paper, repository] - A quality measure for repeating multiple-unit spike patterns.Journal: Biological cyberneticsAuthors' code: Zenodo 18424512 (CC-BY-4.0)Status: code verified, 5 files readable, 1 match
Thursday, 6 August 2026 (1 paper)
- [11] Code ↔ Paper doi:10.1002/
advs.202519893 [paper, repository] - NeuroSuite for Long-Term Functional and Structural Studies of Air-Liquid Interface Cerebral Organoids.Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)Authors' code: BelNeuroCoding/
NeuroMaps (MIT), madlancaster/Neuroweb (no license), Zenodo 19120269 (CC-BY-4.0)Status: code verified, 1,714 files readable, 11 matches
Wednesday, 5 August 2026 (1 paper)
- [12] Code ↔ Paper doi:10.7554/
elife.110170 [paper, repository] - Efficient and reproducible pipelines for spike sorting large-scale electrophysiology data.Journal: eLifeAuthors' code: AllenNeuralDynamics/
aind-ephys-pipeline (MIT), AllenNeuralDynamics/aind-ephys-hybrid-benchm (MIT), hub.docker.com/ark r/ (no license), Zenodo 19481268 (CC-BY-4.0), AllenNeuralDynamics/nextflow aind-data-schema-models (MIT)Status: code verified, 96 files readable, 4 matches
Saturday, 1 August 2026 (3 papers)
- [13] doi:10.1111/
ejn.70641 [paper, data] - Distinct High-Gamma Signals in Primate Prefrontal Cortex Differentiate Cue Information, Preference Revision, and Expected Reward During Value-Based Decisions.Journal: The European journal of neuroscienceStatus: data only, 2 datasets cited
- [14] doi:10.1093/
toxsci/ [paper, data]kfag094 - Building structure activity relationships to avoid toxicity due to unwanted central nervous system ion channel activity.Journal: Toxicological sciences : an official journal of the Society of ToxicologyStatus: data only, 2 datasets cited
- [15] Code ↔ Paper doi:10.1093/
bioinformatics/ [paper, repository]btag570 - CASCADE: criticality avalanche spike cross-platform analysis detection engine, a multi-manufacturer MEA bash analysis pipeline.Journal: Bioinformatics (Oxford, England)Authors' code: Zenodo 20840795 (Apache-2.0)Status: code verified, 27 files readable, 10 matches
Friday, 31 July 2026 (1 paper)
- [16] Code ↔ Paper doi:10.1016/
j.celrep.2026.117782 [paper, repository] - Thermodynamics of consciousness: Non-equilibrium brain dynamics track conscious states.Journal: Cell reportsStatus: code verified, 28 files readable, 8 matches
Thursday, 30 July 2026 (1 paper)
- [17] Code ↔ Paper doi:10.7554/
elife.103046 [paper, repository] - Dichotomy between extracellular signatures of active dendritic chemical synapses and gap junctions.Journal: eLifeStatus: code verified, 154 files readable, 4 matches
Saturday, 25 July 2026 (1 paper)
- [18] doi:10.3390/
bios16080405 [paper] - A Low-Power PLL-Less Wideband OOK Wireless Neural-Signal Transmitter for Miniaturized Neural Interfaces with In Vivo Validation in Freely Moving Mice.Journal: BiosensorsStatus: code on request
Friday, 24 July 2026 (1 paper)
- [19] Code ↔ Paper doi:10.1038/
s41467-026-75492-w [paper, repository] - Place and behavioral modulation of hippocampal neurons during immobility.Journal: Nature communicationsAuthors' code: BurgalossiPublic/
HP-BehModulation (no license)Status: code verified, 19 files readable, 23 matches
Tuesday, 21 July 2026 (2 papers)
- [20] doi:10.1038/
s41467-026-75826-8 [paper, data] - Transcranial focused ultrasound modulates spiking, LFP, and BOLD activity in the primate thalamus.Journal: Nature communicationsStatus: data only, 2 datasets cited
- [21] doi:10.1016/
j.isci.2026.116784 [paper, data] - Age-dependent axonal dysfunctions and altered sharp-wave ripple oscillations in <i>Scn1a</i> <sup><i>+/-</i></sup> mice.Journal: iScienceStatus: code on request, 1 dataset cited
Tuesday, 14 July 2026 (1 paper)
- [22] doi:10.1088/
1741-2552/ [paper, data]ae805e - Human intracranial signal stability tracks anatomical accuracy after electrode reimplantation.Journal: Journal of neural engineeringStatus: data only, 1 dataset cited
Monday, 13 July 2026 (1 paper)
- [23] doi:10.1186/
s41016-026-00441-x [paper, data] - Advances in local field potential research in prolonged disorders of consciousness: a narrative review.Journal: Chinese neurosurgical journalStatus: data only, 1 dataset cited
Wednesday, 8 July 2026 (1 paper)
- [24] Code ↔ Paper doi:10.1523/
jneurosci.1594-25.2026 [paper, repository] - KIASORT: Knowledge-Integrated Automated Spike Sorting for Geometry-Free Neuron Tracking.Journal: The Journal of neuroscience : the official journal of the Society for NeuroscienceAuthors' code: kiasort.com (no license)Status: code verified
Saturday, 4 July 2026 (1 paper)
- [25] doi:10.3390/
biology15131074 [paper] - The Distinct Electrophysiological Mechanisms in the Cortico-Striatal Circuit of LID Rats.Journal: BiologyStatus: code on request
Wednesday, 24 June 2026 (1 paper)
- [26] Code ↔ Paper doi:10.1038/
s41467-026-74243-1 [paper, repository] - Spiking neural network decoders of finger forces from high-density intramuscular microelectrode arrays.Journal: Nature communicationsStatus: code verified, 114 files readable, 14 matches
Tuesday, 23 June 2026 (1 paper)
- [27] Code ↔ Paper doi:10.1371/
journal.pbio.3003818 [paper, repository] - Human neuronal firing varies with the frequency of local field potential oscillations.Journal: PLoS biologyAuthors' code: Zenodo 19860065 (CC-BY-4.0)Status: code verified, 2,005 files readable, 1 match
Monday, 22 June 2026 (1 paper)
- [28] Code ↔ Paper doi:10.1371/
journal.pbio.3003873 [paper, repository] - Distinct sources of decision-related signals in visual cortex are represented in different local field potential bands.Journal: PLoS biologyStatus: code verified, 38 files readable, 8 matches
Wednesday, 17 June 2026 (1 paper)
- [29] Code ↔ Paper doi:10.1016/
j.patter.2026.101590 [paper, repository] - Density-based longitudinal neuron tracking in high-density electrophysiological recordings.Journal: Patterns (New York, N.Y.)Authors' code: cortex-lab/
phy (BSD-3-Clause), jiumao2/PhyWaveformPlugin (GPL-3.0), jiumao2/AutoCurationKilosort (GPL-3.0), jiumao2/DANT_UI (GPL-3.0), EnnyvanBeest/UnitMatch (CC-BY-NC-SA-4.0), Zenodo 19973060 (GPL-2.0), Zenodo 20021262 (GPL-3.0), Zenodo 19973259 (GPL-3.0), Zenodo 19972266 (GPL-3.0), Zenodo 19972858 (GPL-3.0), Zenodo 19973154 (GPL-3.0)Status: code verified, 1,027 files readable, 18 matches
Monday, 15 June 2026 (1 paper)
- [30] Code ↔ Paper doi:10.3389/
fnins.2026.1852774 [paper, repository] - Spatial transcriptomics on an expanded dataset at the brain-electrode interface: exploration of variability and identification of novel biomarkers.Journal: Frontiers in neuroscienceAuthors' code: msureil/
SpatioBiomarker (no license)Status: code verified, 14 files readable, 4 matches
Saturday, 13 June 2026 (1 paper)
- [31] doi:10.1186/
s10194-026-02399-8 [paper] - Early life stress induces brain-wide electrical network predisposition to migraine.Journal: The journal of headache and painStatus: code on request
Thursday, 11 June 2026 (1 paper)
- [32] Code ↔ Paper doi:10.1016/
j.crmeth.2026.101481 [paper, repository] - A hybrid micro-ECoG for functionally targeted multi-site and multi-scale investigation.Journal: Cell reports methodsStatus: code verified, 24 files readable, 9 matches
Tuesday, 9 June 2026 (1 paper)
- [33] Code ↔ Paper doi:10.1073/
pnas.2603966123 [paper, repository] - Oxytocin selectively biases sensory-prefrontal communication through network-level suppression and theta coupling.Journal: Proceedings of the National Academy of Sciences of the United States of AmericaAuthors' code: jeelabKIST/
Oxytocin-LFP (no license)Status: code verified, 10 files readable, 5 matches
Saturday, 6 June 2026 (1 paper)
- [34] Code ↔ Paper doi:10.1016/
j.celrep.2026.117505 [paper, repository] - Impaired spatial coding and neuronal hyperactivity in the medial entorhinal cortex of aged APP knock-in mice.Journal: Cell reportsAuthors' code: Zenodo 19040105 (CC-BY-4.0), klusta-team/
klustakwik (no license), glmmTMB/glmmTMB (no license), florianhartig/DHARMa (gnu), hussainilab/rodriguez-et-al-cell-rep (no license)orts-2026 Status: code verified, 365 files readable, 2 matches
Friday, 5 June 2026 (1 paper)
- [35] Code ↔ Paper doi:10.21769/
bioprotoc.5708 [paper, repository] - Measuring Electrophysiological Activity in Acute Brain Slices, Spheroids, and Organoids Using 3D High-Density Multielectrode Arrays.Journal: Bio-protocolAuthors' code: Zenodo 13908319 (no license)Status: code verified, 1 file readable
Wednesday, 3 June 2026 (3 papers)
- [36] Code ↔ Paper doi:10.1126/
sciadv.adz9893 [paper, repository] - Hippocampal place cells map terrain geometry independently of behavior.Journal: Science advancesAuthors' code: Neuroesc/
Hillscape_analyses (MIT)Status: code verified, 93 files readable, 15 matches - [37] Code ↔ Paper doi:10.1523/
eneuro.0432-25.2026 [paper, repository] - Seize the Data: A User-Friendly GUI for High-Resolution Analysis of Seizure Dynamics in HD-MEA Recordings.Journal: eNeuroAuthors' code: shorturl.at/
vlegn (no license)Status: code verified - [38] Code ↔ Paper doi:10.1186/
s13195-026-02103-7 [paper, repository] - BIN1 gain-of-function in the presynaptic compartment leads to isoform-specific synaptotoxicity.Journal: Alzheimer's research & therapyAuthors' code: yger/
pre-post-drive (no license)Status: code verified, 6 files readable
Monday, 1 June 2026 (1 paper)
- [39] Code ↔ Paper doi:10.1038/
s41592-026-03076-z [paper, repository] - Neuropixels Opto: combining high-resolution electrophysiology and optogenetics.Journal: Nature methodsAuthors' code: spkware/
spks (no license), AllenInstitute/MIES (BSD-2-Clause), codeocean.allenneuraldynamics.org/ (no license)capsule/ 1593868 Status: code verified, 69 files readable, 5 matches
Thursday, 28 May 2026 (2 papers)
- [40] Code ↔ Paper doi:10.1038/
s41467-026-73790-x [paper, repository] - An artefact-resilient wide bandwidth bidirectional graphene neural interface.Journal: Nature communicationsAuthors' code: aguimera/
PhyREC (no license)Status: code verified, 52 files readable, 3 matches - [41] Code ↔ Paper doi:10.1016/
j.celrep.2026.117420 [paper, repository] - Neural population dynamics of direct electrical stimulation of neocortex.Journal: Cell reportsAuthors' code: denmanlab/
am4100_code (MIT), denmanlab/mouse_behavior (no license), denmanlab/estim_populations (GPL-3.0), marcomusy/vedo (MIT)Status: code verified, 642 files readable, 7 matches
Wednesday, 27 May 2026 (1 paper)
- [42] doi:10.1038/
s41398-026-04086-3 [paper] - Hippocampal rhythm modulation via frequency-tuned trigeminal nerve stimulation.Journal: Translational psychiatryStatus: code on request
Tuesday, 26 May 2026 (1 paper)
- [43] Code ↔ Paper doi:10.1371/
journal.pcbi.1013488 [paper, repository] - Evaluating place cell detection methods in Rats and Humans: Implications for cross-species spatial coding.Journal: PLoS computational biologyAuthors' code: HSNPipeline/
PlaceCellMethods (no license), HSNPipeline/SimPlaceCells (MIT), HSNPipeline (no license), spiketools/spiketools (Apache-2.0), lisc-tools/lisc (Apache-2.0)Status: code verified, 280 files readable, 2 matches
Thursday, 21 May 2026 (1 paper)
- [44] doi:10.34133/
cbsystems.0566 [paper] - A Dual-Mode Wireless Microsystem for Monitoring Dopamine and Spike Changes with Dexmedetomidine.Journal: Cyborg and bionic systems (Washington, D.C.)Status: code on request
Tuesday, 19 May 2026 (1 paper)
- [45] Code ↔ Paper doi:10.1038/
s41467-026-73106-z [paper, repository] - Respiratory pauses highlight sleep architecture in mice.Journal: Nature communicationsStatus: code verified, 2,067 files readable, 23 matches
Tuesday, 12 May 2026 (1 paper)
- [46] Code ↔ Paper doi:10.1088/
1741-2552/ [paper, repository]ae5f4b - logLIRA: a method for reliable suppression of electrical stimulation artifacts enabling short-latency neural response recovery.Journal: Journal of neural engineeringStatus: code verified, 45 files readable, 7 matches
Monday, 11 May 2026 (1 paper)
- [47] Code ↔ Paper doi:10.3389/
fnins.2026.1816533 [paper, repository] - LFP-LOC: an LFP power-based method for validating the anatomical placement of high-density neural probes in rodents.Journal: Frontiers in neuroscienceAuthors' code: raffaele222/
LFP-LOC (MIT)Status: code verified, 7 files readable, 13 matches
Friday, 8 May 2026 (3 papers)
- [48] Code ↔ Paper doi:10.1523/
eneuro.0176-24.2026 [paper, repository] - Cell Density Impacts Population Activity in Human iPSC-Derived Neural Networks.Journal: eNeuroAuthors' code: krishnanURMC/
Uzun_eNeuro_2026 (no license)Status: dead link - [49] Code ↔ Paper doi:10.1038/
s41467-026-72620-4 [paper, repository] - Grid maps are disrupted after large-scale arena expansion and recover with experience.Journal: Nature communicationsAuthors' code: hasselmonians/
CMBHOME (no license), cnc-ntnu/bnt (MIT), dannenberglab/Tiling-of-large-scaled-e (MIT), Zenodo 19053822 (MIT)nvironments-by-grid-cell s Status: code verified, 1,184 files readable, 8 matches - [50] Code ↔ Paper doi:10.1038/
s41531-026-01380-1 [paper, repository] - Identifying maximal beta power from directional subthalamic local field potentials in Parkinson's disease.Journal: NPJ Parkinson's diseaseAuthors' code: JKBehnke/
monopolar_directional_be (MIT)ta Status: code verified, 3 files readable, 1 match
Thursday, 7 May 2026 (1 paper)
- [51] doi:10.1136/
bmjopen-2026-117391 [paper] - Prospective multi-phase observational study evaluating local field potentials to guide deep brain stimulation programming in dystonia at a UK Tertiary Neurosciences Centre (LFP-DYT): a protocol.Journal: BMJ openStatus: code on request
Wednesday, 6 May 2026 (2 papers)
- [52] Code ↔ Paper doi:10.1038/
s41586-026-10448-0 [paper, repository] - Plasticity and language in the anaesthetized human hippocampus.Journal: NatureStatus: code verified, 57 files readable, 9 matches
- [53] doi:10.1186/
s13062-026-00778-4 [paper, data] - Multi-omics analysis of deep brain stimulation associated with brain-gut axis modulation and symptom amelioration in a Parkinson's disease mouse model.Journal: Biology directStatus: data only, 1 dataset cited
Saturday, 2 May 2026 (1 paper)
- [54] Code ↔ Paper doi:10.1038/
s41540-026-00730-2 [paper, repository] - Sometimes extracellular recordings fail for good reasons.Journal: NPJ systems biology and applicationsAuthors' code: Zenodo 18198916 (CC-BY-4.0)Status: code verified, 41 files readable, 12 matches
Friday, 1 May 2026 (1 paper)
- [55] doi:10.1186/
s12915-026-02605-8 [paper, data] - Role of neuronal oscillations in memory driven visual processing.Journal: BMC biologyStatus: data only, 1 dataset cited
Tuesday, 21 April 2026 (2 papers)
- [56] Code ↔ Paper doi:10.7554/
elife.109883 [paper, repository] - Prior cocaine use disrupts identification of hidden states by single units and neural ensembles in orbitofrontal cortex.Journal: eLifeAuthors' code: OSF azvhm (no license)Status: code verified, 216 files readable, 7 matches
- [57] Code ↔ Paper doi:10.1038/
s41467-026-71502-z [paper, repository] - Neurons of the human subthalamic nucleus engage with local delta frequency processes during action cancellation.Journal: Nature communicationsAuthors' code: adredish/
MClust-Spike-Sorting-Too (GPL-3.0), hangyabalazs/lbox CellBase (no license), hangyabalazs/human-STN-delta (CC0-1.0), Zenodo 18679923 (CC0-1.0), kiralyb/human-STN-delta (CC0-1.0)Status: code verified, 896 files readable, 39 matches
Friday, 17 April 2026 (2 papers)
- [58] Code ↔ Paper doi:10.1126/
sciadv.aea1927 [paper, repository] - An evolutionary conserved neural mechanism for interpersonal coordination in primates.Journal: Science advancesStatus: code verified, 23 files readable, 10 matches
- [59] Code ↔ Paper doi:10.1038/
s41467-026-71724-1 [paper, repository] - Dynamics of oscillatory power support the integration of perceptual and mnemonic information within the premotor cortex.Journal: Nature communicationsAuthors' code: OSF 5jexn (no license)Status: code verified, 1 file readable
Wednesday, 15 April 2026 (1 paper)
- [60] Code ↔ Paper doi:10.1038/
s41467-026-71331-0 [paper, repository] - A multimodal approach for visualizing and identifying electrophysiological cell types in vivo.Journal: Nature communicationsStatus: code verified, 24 files readable, 8 matches
Monday, 13 April 2026 (1 paper)
- [61] Code ↔ Paper doi:10.1038/
s41467-026-71443-7 [paper, repository] - Large-scale single-neuron recording in the human cortex using an ultra-flexible electrode array.Journal: Nature communicationsAuthors' code: Zenodo 18774630 (CC-BY-4.0)Status: code verified, 13 files readable, 7 matches
Thursday, 9 April 2026 (1 paper)
- [62] Code ↔ Paper doi:10.1113/
jp290593 [paper, repository] - Machine-learning classification of motor unit types in the adult mouse.Journal: The Journal of physiologyAuthors' code: Zenodo 18896999 (GPL-3.0)Status: code verified
Thursday, 2 April 2026 (1 paper)
- [63] Code ↔ Paper doi:10.1016/
j.stemcr.2026.102872 [paper, repository] - A semi-automated MEA spike sorting method for high-throughput assessment of cultured neurons.Journal: Stem cell reportsAuthors' code: Zhao-Lab-UW/
SAMS-Semi-Automatic-MEA- (MIT)Spike-sorting-pipeline- Status: code verified, 76 files readable, 5 matches
Wednesday, 1 April 2026 (2 papers)
- [64] Code ↔ Paper doi:10.1038/
s41586-026-10331-y [paper, repository] - Active dissociation of intracortical spiking and high gamma activity.Journal: NatureStatus: code verified, 27 files readable, 6 matches
- [65] Code ↔ Paper doi:10.3389/
fnins.2026.1605209 [paper, repository] - Spiking neural networks provide accurate and time-efficient models for whisker stimulus classification of the awake mouse.Journal: Frontiers in neuroscienceStatus: code verified, 21 files readable, 3 matches
