Individual dopaminergic neurons induce unique, yet overlapping combinations of behavioural modulations, including safety learning, memory retrieval, and acute locomotion
Paper
Loaded from Europe PMC by your browser; OSCR does not store it: doi.org · Europe PMC
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The authors' code
Python · 96 lines · 3.8 KB · no license
- # The default ``config.py``
- def set_prefs(prefs):
- """This function is called before opening the project"""
- # Specify which files and folders to ignore in the project.
- # Changes to ignored resources are not added to the history and
- # VCSs. Also they are not returned in `Project.get_files()`.
- # Note that ``?`` and ``*`` match all characters but slashes.
- # '*.pyc': matches 'test.pyc' and 'pkg/test.pyc'
- # 'mod*.pyc': matches 'test/mod1.pyc' but not 'mod/1.pyc'
- # '.svn': matches 'pkg/.svn' and all of its children
- # 'build/*.o': matches 'build/lib.o' but not 'build/sub/lib.o'
- # 'build//*.o': matches 'build/lib.o' and 'build/sub/lib.o'
- prefs['ignored_resources'] = [
- '*.pyc', '*~', '.ropeproject', '.hg', '.svn', '_svn', '.git',
- '.tox', '.env', 'node_modules', 'bower_components']
- # Specifies which files should be considered python files. It is
- # useful when you have scripts inside your project. Only files
- # ending with ``.py`` are considered to be python files by
- # default.
- #prefs['python_files'] = ['*.py']
- # Custom source folders: By default rope searches the project
- # for finding source folders (folders that should be searched
- # for finding modules). You can add paths to that list. Note
- # that rope guesses project source folders correctly most of the
- # time; use this if you have any problems.
- # The folders should be relative to project root and use '/' for
- # separating folders regardless of the platform rope is running on.
- # 'src/my_source_folder' for instance.
- #prefs.add('source_folders', 'src')
- # You can extend python path for looking up modules
- #prefs.add('python_path', '~/python/')
- # Should rope save object information or not.
- prefs['save_objectdb'] = True
- prefs['compress_objectdb'] = False
- # If `True`, rope analyzes each module when it is being saved.
- prefs['automatic_soa'] = True
- # The depth of calls to follow in static object analysis
- prefs['soa_followed_calls'] = 0
- # If `False` when running modules or unit tests "dynamic object
- # analysis" is turned off. This makes them much faster.
- prefs['perform_doa'] = True
- # Rope can check the validity of its object DB when running.
- prefs['validate_objectdb'] = True
- # How many undos to hold?
- prefs['max_history_items'] = 32
- # Shows whether to save history across sessions.
- prefs['save_history'] = True
- prefs['compress_history'] = False
- # Set the number spaces used for indenting. According to
- # :PEP:`8`, it is best to use 4 spaces. Since most of rope's
- # unit-tests use 4 spaces it is more reliable, too.
- prefs['indent_size'] = 4
- # Builtin and c-extension modules that are allowed to be imported
- # and inspected by rope.
- prefs['extension_modules'] = []
- # Add all standard c-extensions to extension_modules list.
- prefs['import_dynload_stdmods'] = True
- # If `True` modules with syntax errors are considered to be empty.
- # The default value is `False`; When `False` syntax errors raise
- # `rope.base.exceptions.ModuleSyntaxError` exception.
- prefs['ignore_syntax_errors'] = False
- # If `True`, rope ignores unresolvable imports. Otherwise, they
- # appear in the importing namespace.
- prefs['ignore_bad_imports'] = False
- # If `True`, rope will transform a comma list of imports into
- # multiple separate import statements when organizing
- # imports.
- prefs['split_imports'] = False
- # If `True`, rope will sort imports alphabetically by module name
- # instead of alphabetically by import statement, with from imports
- # after normal imports.
- prefs['sort_imports_alphabetically'] = False
- def project_opened(project):
- """This function is called after opening the project"""
- # Do whatever you like here!
config.py at commit 9cb9fca, no license · at the source
Overview
Abstract
No abstract was found for this paper: the paper, at the publisher.
Repository
Its files are read in the Code ↔ Paper reader above.
mthane/IMBA
9cb9fcaf79f412166d2e571398898b416b6660eb116 files
- IMBAtracker/
.ropeproject/ , Python, 96 linesconfig.py - IMBAtracker/
IMBtracker_cpp/ , C++, 2,011 linesblobUtils.cpp - IMBAtracker/
IMBtracker_cpp/ , C++, 2,250 lineslarvaDistanceMap.cpp - IMBAtracker/
IMBtracker_cpp/ , C++, 349 lineslarvaObject.cpp - IMBAtracker/
IMBtracker_cpp/ , C++, 865 lineslpsolver.cpp - IMBAtracker/
IMBtracker_cpp/ , C++, 100 lineslrvTrackBase.cpp - IMBAtracker/
IMBtracker_cpp/ , C++, 49 lineslrvTrackDebug.cpp - IMBAtracker/
IMBtracker_cpp/ , C++, 1,323 lineslrvTrackFit.cpp - IMBAtracker/
IMBtracker_cpp/ , C++, 5,944 lineslrvTrackOL.cpp - IMBAtracker/
IMBtracker_cpp/ , Shell, 17 linessetup.sh - IMBAtracker/
TrackExperiment.py , Python, 527 lines - IMBAtracker/
TrackUI.py , Python, 338 lines - IMBAtracker/
__init_.py , Python, 18 lines - IMBAtracker/
columnizeColisionGraphWM , Shell, 252 linesodelBorders.sh - IMBAtracker/
createCollisionsCSVinExp , Shell, 15 lineseriment.sh - IMBAtracker/
setup.sh , Shell, 19 lines - IMBAtracker/
sim.py , Python, 76 lines - IMBAtracker/
test.r , R, 1,162 lines - IMBAvisualizer/
legacy/ , R, 43 linesR/ app_config.R - IMBAvisualizer/
legacy/ , R, 73 linesR/ app_server.R - IMBAvisualizer/
legacy/ , R, 235 linesR/ app_ui.R - IMBAvisualizer/
legacy/ , R, 1,068 linesR/ functions_binning.R - IMBAvisualizer/
legacy/ , R, 413 linesR/ functions_help.R - IMBAvisualizer/
legacy/ , R, 708 linesR/ functions_plots.R - IMBAvisualizer/
legacy/ , R, 344 linesR/ functions_processing_tra cked.R - IMBAvisualizer/
legacy/ , R, 375 linesR/ functions_summarise.R - IMBAvisualizer/
legacy/ , R, 1,038 linesR/ functions_track.R - IMBAvisualizer/
legacy/ , R, 65 linesR/ golem_utils_server.R - IMBAvisualizer/
legacy/ , R, 414 linesR/ golem_utils_ui.R - IMBAvisualizer/
legacy/ , R, 84 linesR/ mod_1dBinning_plots.R - IMBAvisualizer/
legacy/ , R, 158 linesR/ mod_1dBinning_sidebar.R - IMBAvisualizer/
legacy/ , R, 177 linesR/ mod_2dbinning.R - IMBAvisualizer/
legacy/ , R, 159 linesR/ mod_accepted_tracks.R - IMBAvisualizer/
legacy/ , R, 155 linesR/ mod_aggregation.R - IMBAvisualizer/
legacy/ , R, 33 linesR/ mod_aggregationTable.R - IMBAvisualizer/
legacy/ , R, 216 linesR/ mod_analysis.R - IMBAvisualizer/
legacy/ , R, 144 linesR/ mod_boxplots.R - IMBAvisualizer/
legacy/ , R, 105 linesR/ mod_colorPicker.R - IMBAvisualizer/
legacy/ , R, 139 linesR/ mod_correlationAnalysis. R - IMBAvisualizer/
legacy/ , R, 95 linesR/ mod_filtering.R - IMBAvisualizer/
legacy/ , R, 82 linesR/ mod_parcoord.R - IMBAvisualizer/
legacy/ , R, 65 linesR/ mod_pca.R - IMBAvisualizer/
legacy/ , R, 173 linesR/ mod_randomForest.R - IMBAvisualizer/
legacy/ , R, 82 linesR/ mod_scatterMulti.R - IMBAvisualizer/
legacy/ , R, 373 linesR/ mod_singleTimeSeries.R - IMBAvisualizer/
legacy/ , R, 80 linesR/ mod_singleTrackSelection .R - IMBAvisualizer/
legacy/ , R, 76 linesR/ mod_uTests.R - IMBAvisualizer/
legacy/ , R, 129 linesR/ mod_upload_analysis.R - IMBAvisualizer/
legacy/ , R, 157 linesR/ mod_variableSelection.R - IMBAvisualizer/
legacy/ , R, 4 linesR/ read_variables.R - IMBAvisualizer/
legacy/ , R, 29 linesR/ run_app.R - IMBAvisualizer/
legacy/ , R, 141 linescreate_variables.R - IMBAvisualizer/
legacy/ , R, 3 linesdata-raw/ my_dataset.R - IMBAvisualizer/
legacy/ , R, 65 linesdev/ 01_start.R - IMBAvisualizer/
legacy/ , R, 99 linesdev/ 02_dev.R - IMBAvisualizer/
legacy/ , R, 42 linesdev/ 03_deploy.R - IMBAvisualizer/
legacy/ , R, 13 linesdev/ run_dev.R - IMBAvisualizer/
legacy/ , R, 7 linesinstall_and_run.R - IMBAvisualizer/
legacy/ , R, 62 linesscripts/ binning.R - IMBAvisualizer/
legacy/ , R, 835 linesscripts/ functions_binning_test.R - IMBAvisualizer/
legacy/ , R, 298 linesscripts/ functions_help_test.R - IMBAvisualizer/
legacy/ , R, 571 linesscripts/ functions_plots_test.R - IMBAvisualizer/
legacy/ , R, 332 linesscripts/ functions_processing_tra cked_test.R - IMBAvisualizer/
legacy/ , R, 314 linesscripts/ functions_summarise_test .R - IMBAvisualizer/
legacy/ , R, 753 linesscripts/ functions_track_test.R - IMBAvisualizer/
legacy/ , R, 130 linesscripts/ silly-walk-analysis.R - IMBAvisualizer/
legacy/ , R, 176 linesscripts/ testing_functions.R - IMBAvisualizer/
legacy/ , Shell, 14 linessetup.sh - IMBAvisualizer/
legacy/ , R, 1,093 linesshiny_app_copies/ r_files/ functions_binning - Copy.R - IMBAvisualizer/
legacy/ , R, 413 linesshiny_app_copies/ r_files/ functions_help - Copy.R - IMBAvisualizer/
legacy/ , R, 708 linesshiny_app_copies/ r_files/ functions_plots - Copy.R - IMBAvisualizer/
legacy/ , R, 375 linesshiny_app_copies/ r_files/ functions_summarise - Copy.R - IMBAvisualizer/
legacy/ , R, 1,038 linesshiny_app_copies/ r_files/ functions_track - Copy.R - IMBAvisualizer/
legacy/ , R, 158 linesshiny_app_copies/ r_files/ mod_1dBinning_sidebar - Copy.R - IMBAvisualizer/
legacy/ , R, 155 linesshiny_app_copies/ r_files/ mod_aggregation - Copy.R - IMBAvisualizer/
legacy/ , R, 221 linesshiny_app_copies/ r_files/ mod_analysis - Copy.R - IMBAvisualizer/
legacy/ , R, 95 linesshiny_app_copies/ r_files/ mod_filtering - Copy.R - IMBAvisualizer/
legacy/ , R, 373 linesshiny_app_copies/ r_files/ mod_singleTimeSeries - Copy.R - IMBAvisualizer/
legacy/ , R, 4 linesshiny_app_copies/ r_files/ read_variables - Copy.R - IMBAvisualizer/
legacy/ , R, 3 linestests/ spelling.R - IMBAvisualizer/
legacy/ , R, 4 linestests/ testthat.R - IMBAvisualizer/
legacy/ , R, 3 linestests/ testthat/ test-app.R - IMBAvisualizer/
legacy/ , R, 26 linestests/ testthat/ test-golem-recommended.R - IMBAvisualizer/
legacy/ , R, 19 linesvignettes/ ILLAV1.Rmd - IMBAvisualizer/
shiny_app/ , R, 144 linescreate_variables.R - IMBAvisualizer/
shiny_app/ , R, 60 linesglobal.R - IMBAvisualizer/
shiny_app/ , R, 1,129 linesr_files/ functions_binning.R - IMBAvisualizer/
shiny_app/ , R, 539 linesr_files/ functions_help.R - IMBAvisualizer/
shiny_app/ , R, 725 linesr_files/ functions_plots.R - IMBAvisualizer/
shiny_app/ , R, 351 linesr_files/ functions_processing_tra cked.R - IMBAvisualizer/
shiny_app/ , R, 458 linesr_files/ functions_summarise.R - IMBAvisualizer/
shiny_app/ , R, 1,179 linesr_files/ functions_track.R - IMBAvisualizer/
shiny_app/ , R, 84 linesr_files/ mod_1dBinning_plots.R - IMBAvisualizer/
shiny_app/ , R, 200 linesr_files/ mod_1dBinning_sidebar.R - IMBAvisualizer/
shiny_app/ , R, 177 linesr_files/ mod_2dbinning.R - IMBAvisualizer/
shiny_app/ , R, 159 linesr_files/ mod_accepted_tracks.R - IMBAvisualizer/
shiny_app/ , R, 158 linesr_files/ mod_aggregation.R - IMBAvisualizer/
shiny_app/ , R, 33 linesr_files/ mod_aggregationTable.R - IMBAvisualizer/
shiny_app/ , R, 240 linesr_files/ mod_analysis.R - IMBAvisualizer/
shiny_app/ , R, 144 linesr_files/ mod_boxplots.R - IMBAvisualizer/
shiny_app/ , R, 105 linesr_files/ mod_colorPicker.R - IMBAvisualizer/
shiny_app/ , R, 139 linesr_files/ mod_correlationAnalysis. R - IMBAvisualizer/
shiny_app/ , R, 122 linesr_files/ mod_filtering.R - IMBAvisualizer/
shiny_app/ , R, 82 linesr_files/ mod_parcoord.R - IMBAvisualizer/
shiny_app/ , R, 65 linesr_files/ mod_pca.R - IMBAvisualizer/
shiny_app/ , R, 173 linesr_files/ mod_randomForest.R - IMBAvisualizer/
shiny_app/ , R, 82 linesr_files/ mod_scatterMulti.R - IMBAvisualizer/
shiny_app/ , R, 373 linesr_files/ mod_singleTimeSeries.R - IMBAvisualizer/
shiny_app/ , R, 80 linesr_files/ mod_singleTrackSelection .R - IMBAvisualizer/
shiny_app/ , R, 76 linesr_files/ mod_uTests.R - IMBAvisualizer/
shiny_app/ , R, 129 linesr_files/ mod_upload_analysis.R - IMBAvisualizer/
shiny_app/ , R, 157 linesr_files/ mod_variableSelection.R - IMBAvisualizer/
shiny_app/ , R, 4 linesr_files/ read_variables.R - IMBAvisualizer/
shiny_app/ , R, 76 linesserver.R - IMBAvisualizer/
shiny_app/ , R, 148 linesui.R - README.md, Text, 196 lines
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