Every paper, by date: page 140

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 140 of 200: 1 January 2024 to 20 December 2023.

Monday, 1 January 2024 (161 papers, 108 on this page)

[31137] doi:10.1093/hmg/ddad171 [paper, repository]

Functional analysis of germline VANGL2 variants using rescue assays of vangl2 knockout zebrafish.

Journal: Human molecular genetics

Authors' code: beboche/nenufaar (GPL-3.0)

Status: code verified, 23 files readable, 1 match

[31138] doi:10.1093/hmg/ddad173 [paper, repository]

Comparison of pharmaceutical properties and biological activities of prednisolone, deflazacort, and vamorolone in DMD disease models.

Journal: Human molecular genetics

Authors' code: liwc01/DEDSeq (no license)

Status: code verified, 34 files readable, 2 matches

[31139] doi:10.1093/hmg/ddad174 [paper, repository]

Novel insight into the etiology of ischemic stroke gained by integrative multiome-wide association study.

Journal: Human molecular genetics

Authors' code: gusevlab/fusion_twas (GPL-3.0)

Status: code verified, 14 files readable, 2 matches

[31140] doi:10.1093/ijnp/pyae003 [paper, data]

The Ability to Voluntarily Regulate Theta Band Activity Affects How Pharmacological Manipulation of the Catecholaminergic System Impacts Cognitive Control.

Journal: The international journal of neuropsychopharmacology

Status: data only, 1 dataset cited

[31141] doi:10.1093/jlb/lsae008 [paper, repository]

Ethical, legal, and policy challenges in field-based neuroimaging research using emerging portable MRI technologies: guidance for investigators and for oversight.

Journal: Journal of law and the biosciences

Authors' code: accessdata.fda.gov/scripts/cdrh (no license), trust-project.eu (no license)

Status: code verified

[31142] doi:10.1093/molbev/msae001 [paper, data]

Deciphering the Role of Rapidly Evolving Conserved Elements in Primate Brain Development and Exploring Their Potential Involvement in Alzheimer's Disease.

Journal: Molecular biology and evolution

Status: data only, 1 dataset cited

[31143] doi:10.1093/nar/gkad886 [paper, repository]

M2OR: a database of olfactory receptor-odorant pairs for understanding the molecular mechanisms of olfaction.

Journal: Nucleic acids research

Authors' code: chemosim-lab/M2OR (Apache-2.0), Zenodo 8385484 (other-open)

Status: code verified, 26 files readable, 4 matches

[31144] doi:10.1093/noajnl/vdae060 [paper, repository]

Limited capability of MRI radiomics to predict primary tumor histology of brain metastases in external validation.

Journal: Neuro-oncology advances

Authors' code: qstro/Brainmet-Radiomics (MIT), qstro/QuickSegViewer (AGPL-3.0)

Status: code verified, 11 files readable, 12 matches

[31145] doi:10.1093/noajnl/vdae132 [paper]

Is pulsed saturation transfer sufficient for differentiating radiation necrosis from tumor progression in brain metastases?

Journal: Neuro-oncology advances

Status: code on request

[31146] doi:10.1093/noajnl/vdae144 [paper, data]

A human embryonic stem cell-based model reveals the cell of origin of FOXR2-activated CNS neuroblastoma.

Journal: Neuro-oncology advances

Status: data only, 1 dataset cited

[31147] doi:10.1093/noajnl/vdae172 [paper, data]

Genomic tumor evolution dictates human medulloblastoma progression.

Journal: Neuro-oncology advances

Status: code on request, 1 dataset cited

[31148] doi:10.1093/noajnl/vdae184 [paper]

Cell migration simulator-based biomarkers for glioblastoma.

Journal: Neuro-oncology advances

Status: code on request

[31149] doi:10.1093/noajnl/vdae190 [paper, repository]

Automated pediatric brain tumor imaging assessment tool from CBTN: Enhancing suprasellar region inclusion and managing limited data with deep learning.

Journal: Neuro-oncology advances

Authors' code: d3b-center/peds-brain-seg-pipeline-public (BSD-2-Clause)

Status: empty repository, 2 files readable

[31150] doi:10.1093/procel/pwad036 [paper, data]

BMP7 expression in mammalian cortical radial glial cells increases the length of the neurogenic period.

Journal: Protein & cell

Status: data only, 1 dataset cited

[31151] doi:10.1093/scan/nsad076 [paper, data]

The speed of race.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[31152] doi:10.1093/scan/nsae002 [paper, data]

Social support and fear-inhibition: an examination of underlying neural mechanisms.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[31153] doi:10.1093/schizbullopen/sgae010 [paper, repository]

Cortical Network Disruption Is Minimal in Early Stages of Psychosis.

Journal: Schizophrenia bulletin open

Authors' code: pvandyken/paper-CorticalDisruptionFEPMinimal (no license), Zenodo 8237288 (other-open), Zenodo 7613561 (other-open), akhanf/snakebids (MIT), akhanf/snakedwi (MIT)

Status: code verified, 202 files readable, 4 matches

[31154] doi:10.1097/aln.0000000000004795 [paper, repository]

Effect of Propofol on Heart Rate and Its Coupling to Cortical Slow Waves in Humans.

Journal: Anesthesiology

Authors' code: marcoFabus/fabus2022brainheart (no license)

Status: dead link

[31155] doi:10.1101/2023.12.11.571103 [paper, repository]

Model-based inference of synaptic plasticity rules.

Journal: Advances in neural information processing systems

Authors' code: yashsmehta/MetaLearnPlasticity (MIT)

Status: code verified, 16 files readable, 6 matches

[31156] doi:10.1117/1.nph.11.1.014305 [paper, repository]

FiPhA: an open-source platform for fiber photometry analysis.

Journal: Neurophotonics

Authors' code: mfbridge/FiPhA (MIT)

Status: code verified, 45 files readable, 10 matches

[31157] doi:10.1117/1.nph.11.1.014306 [paper, repository]

Low-cost reversible tandem lens mesoscope for brain imaging in rodents.

Journal: Neurophotonics

Authors' code: juliettecheyne/cheyne_lab (no license)

Status: code verified, 114 files readable, 1 match

[31158] doi:10.1117/1.nph.11.1.014413 [paper]

Model-based correction of rapid thermal confounds in fluorescence neuroimaging of targeted perturbation.

Journal: Neurophotonics

Status: code on request

[31159] doi:10.1117/1.nph.11.1.014414 [paper, data]

Molecular mapping of neuronal architecture using STORM microscopy and new fluorescent probes for SMLM imaging.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[31160] doi:10.1117/1.nph.11.1.015006 [paper, repository]

Contribution of optical resolution to the spatial precision of two-photon optogenetic photostimulation <i>in vivo</i>.

Journal: Neurophotonics

Authors' code: Packer-Lab/OPSF_vs_PPSF (no license)

Status: code verified, 4 files readable, 4 matches

[31161] doi:10.1117/1.nph.11.1.015007 [paper]

Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats.

Journal: Neurophotonics

Status: code on request

[31162] doi:10.1159/000535151 [paper, data]

Bilateral Cryptococcal Choroiditis in a Human Immunodeficiency Virus-Infected Patient: A Case Report.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[31163] doi:10.1159/000535349 [paper, data]

Capecitabine-Related Fourth Nerve Palsy: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[31164] doi:10.1159/000536467 [paper, data]

No Efficacy with Noninvasive Brain Stimulation for Painful Legs and Moving Toes: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31165] doi:10.1159/000536473 [paper, data]

A Novel Method for Tracking Neck Motions Using a Skin-Conformable Wireless Accelerometer: A Pilot Study.

Journal: Digital biomarkers

Status: data only, 1 dataset cited

[31166] doi:10.1159/000538088 [paper, data]

A Case of Multifocal Ectopic Germinoma Manifesting with Medial Longitudinal Fasciculus Syndrome.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[31167] doi:10.1159/000538486 [paper, data]

Feature Importance Analysis and Machine Learning for Alzheimer's Disease Early Detection: Feature Fusion of the Hippocampus, Entorhinal Cortex, and Standardized Uptake Value Ratio.

Journal: Digital biomarkers

Status: data only, 1 dataset cited

[31168] doi:10.1159/000538821 [paper, data]

Successful Management of Acute Streptococcal Meningoencephalitis Complicated by Bilateral Third-Nerve Palsies, Wall-Eyed Bilateral Internuclear Ophthalmoplegia, Blindness, and Deafness: Case Report.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[31169] doi:10.1159/000538915 [paper, data]

The Rehabilitation for Visual Cognitive Impairment due to Hippocampal Infarction: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31170] doi:10.1159/000539186 [paper, data]

Severe Relapsing Autoimmune Encephalitis with GABA_A Receptor, Titin, and AchR Antibodies in a Patient with Thymoma: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31171] doi:10.1159/000539548 [paper, data]

Paradoxical Kinesia Induced by Nightmare: Unique Case Report and Insights regarding the Neural Mechanism Based on Human and Rat Studies.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31172] doi:10.1159/000539718 [paper, data]

Intracranial Inflammatory Myofibroblastic Tumor: A Rare Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[31173] doi:10.1159/000539741 [paper, data]

A Rare Case of Coronavirus Disease 2019 Encephalitis Mimicking Creutzfeldt-Jacob Disease in an Immunocompromised Patient: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31174] doi:10.1159/000539820 [paper, data]

Aspheric Macular Lens for Complication in Cataract Surgery.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[31175] doi:10.1159/000539850 [paper, data]

Diagnostic and Therapeutic Challenges of Rare Concurrent Intracranial Meningioma and Oligodendroglioma.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[31176] doi:10.1159/000540257 [paper, data]

Case Report of Complete Response to Olaparib in a Patient with Breast Cancer Brain Metastases.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[31177] doi:10.1159/000540417 [paper, data]

Metamorphopsia with SMART Syndrome: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31178] doi:10.1159/000540445 [paper, data]

Long-Term Response of Lorlatinib to Leptomeningeal Metastasis in Patients with Anaplastic Lymphoma Kinase Fusion Positive Non-Small Lung Cancer: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[31179] doi:10.1159/000540496 [paper, data]

Dysthyroid Optic Neuropathy Complicated by Neuromyelitis Optica Spectrum Disorder: A Case Report.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[31180] doi:10.1159/000540799 [paper, data]

Epileptic Encephalopathy due to CACNA1A Variant: A Case Report and Diagnostic Challenges from Resource-Limited Settings.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31181] doi:10.1159/000540951 [paper, data]

Multiphasic Acute Disseminated Encephalomyelitis with a Temporal Gap of 26 Years: A Case Report with Novel Presentation.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31182] doi:10.1159/000541551 [paper, data]

Suspected Postpartum Depression Revealed to be CSF1R-Related Leukoencephalopathy: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31183] doi:10.1159/000541620 [paper, data]

Pelvic/Sacral Chondrosarcoma with Brain Metastasis: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[31184] doi:10.1159/000541698 [paper, data]

Virus-Induced Voracity: Uncovering Hyperphagia Post-Herpes Simplex Virus Type 1.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31185] doi:10.1159/000542452 [paper, data]

Diabetic Striatopathy (Hyperglycemic Hemichorea-Hemiballismus Syndrome) in a Young Patient with Type 1 Diabetes Mellitus in Dar es Salaam, Tanzania: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[31186] doi:10.1167/jov.24.1.3 [paper, data]

Interaction between central and peripheral vision: Influence of distance and spatial frequencies.

Journal: Journal of vision

Status: data only, 3 datasets cited

[31187] doi:10.1167/tvst.13.1.18 [paper, repository]

Cone-Driven, Geniculocortical Responses in Canine Models of Outer Retinal Disease.

Journal: Translational vision science & technology

Authors' code: gkaguirrelab/forwardModel (no license)

Status: code verified, 141 files readable, 2 matches

[31188] doi:10.1177/17448069241249455 [paper, data]

Transcriptomic analysis of differentially alternative splicing patterns in mice with inflammatory and neuropathic pain.

Journal: Molecular pain

Status: data only, 1 dataset cited

[31189] doi:10.1177/17448069241290114 [paper, data]

Mitochondrial dysfunction and disulfidptosis co-regulate neuronal cell in neuropathic pain based on bioinformatics analysis.

Journal: Molecular pain

Status: data only, 1 dataset cited

[31190] doi:10.1177/20552076241277032 [paper, repository]

Computational analysis of long QT syndrome type 2 and the therapeutic effects of KCNQ1 antibodies.

Journal: Digital health

Authors' code: QiFu77/Computational-Analysis-of-Arrhythmogenesis (no license)

Status: code verified, 23 files readable, 2 matches

[31191] doi:10.1177/20552076241277185 [paper, data]

Diagnosing epileptic seizures using combined features from independent components and prediction probability from EEG data.

Journal: Digital health

Status: data only, 1 dataset cited

[31192] doi:10.1177/20552076241281200 [paper, repository]

Classification of underlying paroxysmal supraventricular tachycardia types using deep learning of sinus rhythm electrocardiograms.

Journal: Digital health

Authors' code: SNU-DRL/classification-psvt (MIT)

Status: code verified, 14 files readable, 3 matches

[31193] doi:10.1177/20552076241286140 [paper, data]

Brain tumor classification using fine-tuned transfer learning models on magnetic resonance imaging (MRI) images.

Journal: Digital health

Status: data only, 2 datasets cited

[31194] doi:10.1177/20552076241295577 [paper, data]

Towards privacy-preserving Alzheimer's disease classification: Federated learning on T1-weighted magnetic resonance imaging data.

Journal: Digital health

Status: data only, 2 datasets cited

[31195] doi:10.1177/20552076241297355 [paper, data]

Parkinson's disease detection from EEG signal employing autoencoder and RBFNN-based hybrid deep learning framework utilizing power spectral density.

Journal: Digital health

Status: data only, 2 datasets cited

[31196] doi:10.1177/20552076241305282 [paper, data]

Enhanced MRI-based brain tumor segmentation and feature extraction using Berkeley wavelet transform and ETCCNN.

Journal: Digital health

Status: data only, 1 dataset cited

[31197] doi:10.1177/23312165241246596 [paper, repository]

Extending Subcortical EEG Responses to Continuous Speech to the Sound-Field.

Journal: Trends in hearing

Authors' code: Eriksholm-Research-Centre/Sound-field-speech-ABR (MIT)

Status: code verified, 10 files readable, 2 matches

[31198] doi:10.1177/23312165241266316 [paper, data]

Neural Decoding of the Speech Envelope: Effects of Intelligibility and Spectral Degradation.

Journal: Trends in hearing

Status: data only, 1 dataset cited

[31199] doi:10.1177/23312165241282872 [paper, repository]

ADT Network: A Novel Nonlinear Method for Decoding Speech Envelopes From EEG Signals.

Journal: Trends in hearing

Authors' code: ruix6/ADT_Network (MIT)

Status: code verified, 25 files readable, 4 matches

[31200] doi:10.1177/23312165241287622 [paper, data]

Processing of Visual Speech Cues in Speech-in-Noise Comprehension Depends on Working Memory Capacity and Enhances Neural Speech Tracking in Older Adults With Hearing Impairment.

Journal: Trends in hearing

Status: data only, 1 dataset cited

[31201] doi:10.1177/23312165241298606 [paper, repository]

Estimating Pitch Information From Simulated Cochlear Implant Signals With Deep Neural Networks.

Journal: Trends in hearing

Authors' code: marl/crepe (MIT), ashi-ta/ci_signal_simulator (other)

Status: code verified, 17 files readable, 4 matches

[31202] doi:10.1177/23982128241255798 [paper, repository]

Does theta synchronicity of sensory information enhance associative memory? Replicating the theta-induced memory effect.

Journal: Brain and neuroscience advances

Authors' code: fserin/ReplicatingTIME (CC0-1.0)

Status: code verified, 9 files readable, 3 matches

[31203] doi:10.1177/27536130241283789 [paper]

Exploring the Feasibility and Acceptability of Telehealth Qi Gong Shared Medical Appointments: A Novel Approach to Expand Access.

Journal: Global advances in integrative medicine and health

Status: code on request

[31204] doi:10.1265/ehpm.24-00126 [paper]

Chronic noise exposure induces Alzheimer's disease-like neuropathology and cognitive impairment via ferroptosis in rat hippocampus.

Journal: Environmental health and preventive medicine

Status: data only

[31205] doi:10.12688/f1000research.141178.2 [paper, data]

Comparison of treatment planning for stereotactic radiosurgery and stereotactic body radiation therapy techniques with 2.5mm and 5mm multileaf collimator (MLC): A pilot study.

Journal: F1000Research

Status: data only, 1 dataset cited

[31206] doi:10.12688/f1000research.142233.4 [paper, data]

Delirium management and current practice among Intensive Care Units Doctors, Khartoum.

Journal: F1000Research

Status: data only, 1 dataset cited

[31207] doi:10.12688/f1000research.145391.3 [paper, data]

Molecular docking studies and molecular dynamic simulation analysis: To identify novel ATP-competitive inhibition of Glycogen synthase kinase-3β for Alzheimer's disease.

Journal: F1000Research

Status: data only, 1 dataset cited

[31208] doi:10.12688/f1000research.151963.2 [paper, repository]

Protocol for a pilot clinical trial of the senolytic drug combination Dasatinib Plus Quercetin to mitigate age-related health and cognitive decline in mental disorders.

Journal: F1000Research

Authors' code: OSF 92gmq (no license)

Status: empty repository

[31209] doi:10.12688/f1000research.152034.2 [paper, data]

RNA-sequencing Reveals Altered Gene Expression in the Ventromedial Hypothalamus Following Predator Odor Exposure.

Journal: F1000Research

Status: data only, 1 dataset cited

[31210] doi:10.12688/f1000research.153670.2 [paper, data]

A guide to selecting high-performing antibodies for Huntingtin (UniProt ID: P42858) for use in western blot, immunoprecipitation, and immunofluorescence.

Journal: F1000Research

Status: data only, 1 dataset cited

[31211] doi:10.12688/f1000research.155204.2 [paper, repository]

A streamlined workflow for long-read DNA methylation analysis with NanoMethViz and Bioconductor.

Journal: F1000Research

Authors' code: mritchielab/LongMod123 (Apache-2.0)

Status: code verified, 3 files readable, 24 matches

[31212] doi:10.12688/f1000research.157233.2 [paper, repository]

Diagnosis of brain death in wistar rats at different levels of death induction.

Journal: F1000Research

Authors' code: figshare 6 (no license)

Status: dead link

[31213] doi:10.12688/wellcomeopenres.20956.2 [paper, data]

Study protocol for identifying resting brain functional connectivity markers of response to continuous Theta Burst Stimulation and cathodal transcranial Direct Current Stimulation in patients with schizophrenia with persistent auditory hallucinations.

Journal: Wellcome open research

Status: data only, 1 dataset cited

[31214] doi:10.12688/wellcomeopenres.23033.4 [paper, repository]

The therapeutic potential of exercise in post-traumatic stress disorder and its underlying mechanisms: A living systematic review of human and non-human studies.

Journal: Wellcome open research

Authors' code: galenos-project/LSR2_exercise_H (no license), galenos-project/LSR2_exercise_A (no license), OSF q8uhz (no license), OSF zn5p4 (no license)

Status: code verified, 8 files readable, 5 matches

[31215] doi:10.12688/wellcomeopenres.23249.2 [paper, repository]

Neuroblastoma cell lines display heterogeneity in differentiation responses.

Journal: Wellcome open research

Authors' code: Zenodo 13905809 (CC-BY-4.0), slgillen/differentiation_response_heterogeneity_transcriptomic_analyses (CC-BY-4.0)

Status: code verified, 6 files readable

[31216] doi:10.1371/journal.pbio.3002445 [paper, data]

Reduced serotonergic transmission alters sensitivity to cost and reward via 5-HT1A and 5-HT1B receptors in monkeys.

Journal: PLoS biology

Status: data only, 1 dataset cited

[31217] doi:10.14283/jpad.2024.54 [paper, data]

Association of Cognitive Reserve Indicator with Cognitive Decline and Structural Brain Differences in Middle and Older Age: Findings from the UK Biobank.

Journal: The journal of prevention of Alzheimer's disease

Status: data only, 1 dataset cited

[31218] doi:10.14283/jpad.2024.66 [paper, data]

Alzheimer's Disease Prediction Using Fly-Optimized Densely Connected Convolution Neural Networks Based on MRI Images.

Journal: The journal of prevention of Alzheimer's disease

Status: data only, 2 datasets cited

[31219] doi:10.14283/jpad.2024.79 [paper, repository]

Periodontal Disease and Alzheimer's: Insights from a Systematic Literature Network Analysis.

Journal: The journal of prevention of Alzheimer's disease

Authors' code: alicevillar/SLNA_PD-AD (no license)

Status: empty repository, 1 file readable

[31220] doi:10.1503/jpn.230099 [paper, repository]

Epigenetic profile of the immune system associated with symptom severity and treatment response in schizophrenia.

Journal: Journal of psychiatry & neuroscience : JPN

Authors' code: Yuanhao-Tang/SZ_severity_methylation (no license)

Status: dead link

[31221] doi:10.2174/1570159x21666230314143803 [paper, data]

Physical Exercise to Redynamize Interoception in Substance use Disorders.

Journal: Current neuropharmacology

Status: data only, 1 dataset cited

[31222] doi:10.22037/ghfbb.v17i4.2960 [paper, data]

The role of genetic defects in carnitine-associated hepatic encephalopathy: a review of literature.

Journal: Gastroenterology and hepatology from bed to bench

Status: data only, 1 dataset cited

[31223] doi:10.22038/ijbms.2023.72207.15698 [paper, data]

D-Pinitol improves cognitive dysfunction and neuronal damage induced by isoproterenol via modulation of NF-κB/BDNF/GFAP signaling in Swiss albino mice.

Journal: Iranian journal of basic medical sciences

Status: data only, 1 dataset cited

[31224] doi:10.3233/jad-221241 [paper, repository]

Gene Co-Expression Analysis of Multiple Brain Tissues Reveals Correlation of FAM222A Expression with Multiple Alzheimer's Disease-Related Genes.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: datastorm-open/visNetwork (other)

Status: code verified, 85 files readable

[31225] doi:10.3233/jad-230825 [paper, repository]

Network Hyperexcitability in Early-Stage Alzheimer's Disease: Evaluation of Functional Connectivity Biomarkers in a Computational Disease Model.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: CornelisStam/BrainWave (no license)

Status: empty repository, 1 file readable

[31226] doi:10.3233/jad-230934 [paper, repository]

A Continuous Extension of Gene Set Enrichment Analysis Using the Likelihood Ratio Test Statistics Identifies Vascular Endothelial Growth Factor as a Candidate Pathway for Alzheimer's Disease via ITGA5.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: Ali-Mahzarnia/gslrt2 (no license)

Status: code verified, 7 files readable, 1 match

[31227] doi:10.3233/jad-231192 [paper, data]

Sulcal Morphometry Predicts Mild Cognitive Impairment Conversion to Alzheimer's Disease.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 2 datasets cited

[31228] doi:10.3233/jad-231271 [paper]

Neural Computation-Based Methods for the Early Diagnosis and Prognosis of Alzheimer's Disease Not Using Neuroimaging Biomarkers: A Systematic Review.

Journal: Journal of Alzheimer's disease : JAD

Status: data only

[31229] doi:10.3233/jad-231391 [paper, data]

Sildenafil as a Candidate Drug for Alzheimer's Disease: Real-World Patient Data Observation and Mechanistic Observations from Patient-Induced Pluripotent Stem Cell-Derived Neurons.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[31230] doi:10.3233/jad-240512 [paper, data]

Association of GLOD4 with Alzheimer's Disease in Humans and Mice.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[31231] doi:10.3233/jhd-231509 [paper, data]

Mono- and Biallelic Inactivation of Huntingtin Gene in Patient-Specific Induced Pluripotent Stem Cells Reveal HTT Roles in Striatal Development and Neuronal Functions.

Journal: Journal of Huntington's disease

Status: data only, 1 dataset cited

[31232] doi:10.3233/jnd-230134 [paper, data]

A c.1775C > T Point Mutation of Sodium Channel Alfa Subunit Gene (SCN4A) in a Three-Generation Sardinian Family with Sodium Channel Myotonia.

Journal: Journal of neuromuscular diseases

Status: data only, 2 datasets cited

[31233] doi:10.3233/jpd-230129 [paper, repository]

Alpha-Synuclein Pre-Formed Fibrils Injected into Prefrontal Cortex Primarily Spread to Cortical and Subcortical Structures.

Journal: Journal of Parkinson's disease

Authors' code: aldridge.lab.uiowa.edu/open-science (no license)

Status: code verified

[31234] doi:10.3233/jpd-240065 [paper]

Modulation of Cerebellar Oscillations with Subthalamic Stimulation in Patients with Parkinson's Disease.

Journal: Journal of Parkinson's disease

Status: code on request

[31235] doi:10.33696/neurol.5.103 [paper, data]

Protein Assembly Modulation: A New Approach to Amyotrophic Lateral Sclerosis (ALS) Therapeutics.

Journal: Journal of experimental neurology

Status: data only, 1 dataset cited

[31236] doi:10.3389/ebm.2024.10401 [paper]

Whole blood transcriptome profile identifies motor neurone disease RNA biomarker signatures.

Journal: Experimental biology and medicine (Maywood, N.J.)

Status: data only

[31237] doi:10.3390/biomimetics9010017 [paper]

Assessment of Pedestrians' Head and Lower Limb Injuries in Tram-Pedestrian Collisions.

Journal: Biomimetics (Basel, Switzerland)

Status: code on request

[31238] doi:10.4103/1673-5374.375343 [paper, data]

Spi1 regulates the microglial/macrophage inflammatory response via the PI3K/AKT/mTOR signaling pathway after intracerebral hemorrhage.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[31239] doi:10.5152/alphapsychiatry.2024.231369 [paper, repository]

Imaging Transcriptomics of the Brain for Schizophrenia.

Journal: Alpha psychiatry

Authors' code: BMHLab/AHBAprocessing (no license)

Status: code verified, 386 files readable

[31240] doi:10.7150/ijbs.86736 [paper, data]

Connexin 36 Mediated Intercellular Endoplasmic Reticulum Stress Transmission Induces SSTA Resistance in Growth Hormone Pituitary Adenoma.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

[31241] doi:10.7150/thno.88678 [paper, data]

LCP1 knockdown in monocyte-derived macrophages: mitigating ischemic brain injury and shaping immune cell signaling and metabolism.

Journal: Theranostics

Status: data only, 2 datasets cited

[31242] doi:10.7150/thno.89008 [paper, data]

Exosomes derived from CD271⁺CD56⁺ bone marrow mesenchymal stem cell subpopoulation identified by single-cell RNA sequencing promote axon regeneration after spinal cord injury.

Journal: Theranostics

Status: data only, 1 dataset cited

[31243] doi: [paper]

Controlled noninvasive modulation of deep brain regions in humans

Journal: Communications engineering

Status: code on request

[31244] doi: [paper]

Implementation of binarized neural networks immune to device variation and voltage drop employing resistive random access memory bridges and capacitive neurons

Journal: Communications engineering

Status: code on request

Sunday, 31 December 2023 (3 papers)

[31245] doi:10.1002/advs.202306826 [paper, repository]

Mind In Vitro Platforms: Versatile, Scalable, Robust, and Open Solutions to Interfacing with Living Neurons.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: miv-os.readthedocs.io (no license)

Status: code verified

[31246] doi:10.3390/brainsci14010040 [paper, data]

Abnormal Spatial and Temporal Overlap of Time-Varying Brain Functional Networks in Patients with Schizophrenia.

Journal: Brain sciences

Status: data only, 1 dataset cited

[31247] doi:10.3390/e26010046 [paper, repository]

Neural Causal Information Extractor for Unobserved Causes.

Journal: Entropy (Basel, Switzerland)

Authors' code: jh-liang/NeuralCausalInfoExtractor (no license)

Status: code verified, 69 files readable, 5 matches

Saturday, 30 December 2023 (1 paper)

[31248] doi:10.1016/j.dib.2023.110024 [paper, data]

Dual-layer electroencephalography data during real-world table tennis.

Journal: Data in brief

Status: data only, 2 datasets cited

Friday, 29 December 2023 (7 papers)

[31249] doi:10.1016/j.immuni.2023.12.002 [paper]

Trem2 expression in microglia is required to maintain normal neuronal bioenergetics during development.

Journal: Immunity

Status: code on request

[31250] doi:10.1016/j.xpro.2023.102770 [paper, repository]

Protocol to assess extravasation of fluorescent molecules in mice after ultrasound-mediated blood-brain barrier opening.

Journal: STAR protocols

Authors' code: uva-peirce-cottler-lab/public_REAVER (BSD-3-Clause), TheIlovitshLab/BBBD-REAVER (no license)

Status: code verified, 142 files readable, 7 matches

[31251] doi:10.1073/pnas.2312204121 [paper, repository]

Co-occurring ripple oscillations facilitate neuronal interactions between cortical locations in humans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: iverzh/coripple-prediction (no license), Zenodo 101836595 (no license)

Status: code verified, 105 files readable, 3 matches

[31252] doi:10.1161/jaha.123.031514 [paper, data]

Suboptimal Sleep Duration Is Associated With Poorer Neuroimaging Brain Health Profiles in Middle-Aged Individuals Without Stroke or Dementia.

Journal: Journal of the American Heart Association

Status: data only, 2 datasets cited

[31253] doi:10.3389/fnins.2023.1269996 [paper]

Detecting ferroptosis and immune infiltration profiles in multiple system atrophy using postmortem brain tissue.

Journal: Frontiers in neuroscience

Status: data only

[31254] doi:10.3390/biom14010048 [paper, data]

Modified Meta Heuristic BAT with ML Classifiers for Detection of Autism Spectrum Disorder.

Journal: Biomolecules

Status: data only, 1 dataset cited

[31255] doi:10.3390/s24010210 [paper, data]

Investigating Activity Recognition for Hemiparetic Stroke Patients Using Wearable Sensors: A Deep Learning Approach with Data Augmentation.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Thursday, 28 December 2023 (8 papers)

[31256] doi:10.1007/s00439-023-02626-1 [paper, data]

Regulation potential of transcribed simple repeated sequences in developing neurons.

Journal: Human genetics

Status: data only, 1 dataset cited

[31257] doi:10.1007/s11011-023-01322-3 [paper, data]

Genomic insights and advanced machine learning: characterizing autism spectrum disorder biomarkers and genetic interactions.

Journal: Metabolic brain disease

Status: data only, 1 dataset cited

[31258] doi:10.1016/j.cub.2023.12.003 [paper, repository]

Molecular organization of neuronal cell types and neuromodulatory systems in the zebrafish telencephalon.

Journal: Current biology : CB

Authors' code: Anneser/zebrafishTelencephalon (GPL-3.0)

Status: code verified, 13 files readable, 15 matches

[31259] doi:10.1016/j.dcn.2023.101337 [paper, repository]

A multi-sample evaluation of the measurement structure and function of the modified monetary incentive delay task in adolescents.

Journal: Developmental cognitive neuroscience

Authors' code: OSF a6t8k (no license), Zenodo 8387971 (other-open), Zenodo 10211538 (CC-BY-4.0), Zenodo 7117719 (Apache-2.0), demidenm/multisample_midmeasurestruct (MIT), demidenm/pyrelimri (MIT)

Status: code verified, 207 files readable, 17 matches

[31260] doi:10.1016/j.molmet.2023.101864 [paper, data]

Maternal Western diet programs cardiometabolic dysfunction and hypothalamic inflammation via epigenetic mechanisms predominantly in the male offspring.

Journal: Molecular metabolism

Status: data only, 1 dataset cited

[31261] doi:10.1016/j.xpro.2023.102793 [paper]

Protocol for differential multi-omic analyses of distinct cell types in the mouse cerebral cortex.

Journal: STAR protocols

Status: code on request

[31262] doi:10.3390/cells13010067 [paper, data]

CREB1 Facilitates GABAergic Neural Differentiation of Human Mesenchymal Stem Cells through BRN2 for Pain Alleviation and Locomotion Recovery after Spinal Cord Injury.

Journal: Cells

Status: data only, 1 dataset cited

[31263] doi:10.3390/ijms25010399 [paper, data]

Unique tRNA Fragment Upregulation with SARS-CoV-2 but Not with SARS-CoV Infection.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Wednesday, 27 December 2023 (14 papers)

[31264] doi:10.1038/s41598-023-50505-6 [paper, data]

Detection and classification of brain tumor using hybrid deep learning models.

Journal: Scientific reports

Status: data only, 1 dataset cited

[31265] doi:10.1073/pnas.2306295121 [paper, repository]

Individuals who see the good in the bad engage distinctive default network coordination during post-encoding rest.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: siyer7/default_network-socioaffective-memory-variability (no license)

Status: code verified, 2 files readable, 3 matches

[31266] doi:10.1088/1741-2552/ad1385 [paper, repository]

Single-pulse electrical stimulation artifact removal using the novel matching pursuit-based artifact reconstruction and removal method (MPARRM).

Journal: Journal of neural engineering

Authors' code: neurotechcenter/MPARRM_SPES (no license)

Status: code verified, 694 files readable, 3 matches

[31267] doi:10.1242/bio.060167 [paper, data]

Hypoxia-inducible factor 1 alpha protein increases without changes in mRNA during acute hypoxic exposure of the Gulf killifish, Fundulus grandis.

Journal: Biology open

Status: data only, 1 dataset cited

[31268] doi:10.1371/journal.pcbi.1011704 [paper, repository]

Normalization by orientation-tuned surround in human V1-V3.

Journal: PLoS computational biology

Authors' code: WinawerLab/StdVisualModel (no license), vistalab/vistasoft (no license)

Status: code verified, 2,067 files readable, 4 matches

[31269] doi:10.1371/journal.pcbi.1011761 [paper, repository]

PyRates-A code-generation tool for modeling dynamical systems in biology and beyond.

Journal: PLoS computational biology

Authors' code: pyrates-neuroscience/use_examples (GPL-3.0), pyrates-neuroscience (no license), auto-07p/auto-07p (no license), pyrates-neuroscience/PyRates (GPL-3.0), Zenodo 10126327 (CC-BY-4.0), Zenodo 10126340 (CC-BY-4.0), Zenodo 10126046 (CC-BY-4.0), supp:PMC10775981/pcbi.1011761.s002.m (no license), pyrates-neuroscience/rectipy (GPL-3.0), pyrates-neuroscience/pycobi (GPL-3.0)

Status: code verified, 510 files readable, 29 matches

[31270] doi:10.1371/journal.pcbi.1011763 [paper, repository]

Estimating neuronal firing density: A quantitative analysis of firing rate map algorithms.

Journal: PLoS computational biology

Authors' code: RoddyMGrieves/Rate-map-quantification (MIT), RoddyMGrieves/rate_mapper (MIT)

Status: code verified, 48 files readable, 20 matches

[31271] doi:10.1371/journal.pgen.1011112 [paper, repository]

An augmented Mendelian randomization approach provides causality of brain imaging features on complex traits in a single biobank-scale dataset.

Journal: PLoS genetics

Authors' code: kehongjie/ImagingMR (no license), BIG-S2/GWAS (no license), ZhaoXM-Lab/MR-PL (no license)

Status: code verified, 35 files readable, 3 matches

[31272] doi:10.1371/journal.pone.0288668 [paper, repository]

Are brain displacements and pressures within the parenchyma induced by surface pressure differences? A computational modelling study.

Journal: PloS one

Authors' code: Zenodo 8187314 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[31273] doi:10.3390/bioengineering11010030 [paper, data]

Classification of EEG Signals Based on Sparrow Search Algorithm-Deep Belief Network for Brain-Computer Interface.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 2 datasets cited

[31274] doi:10.3390/cancers16010138 [paper, repository]

MRI-Based Assessment of Brain Tumor Hypoxia: Correlation with Histology.

Journal: Cancers

Authors' code: python.org (no license)

Status: code verified

[31275] doi:10.3390/life14010048 [paper, data]

Evolution of Consciousness.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[31276] doi:10.7554/elife.87751 [paper, repository]

&lt;i&gt;FSHβ&lt;/i&gt; links photoperiodic signaling to seasonal reproduction in Japanese quail.

Journal: eLife

Authors' code: supp:PMC10752586/elife-87751-code1.zip (no license)

Status: empty repository

[31277] doi:10.7554/elife.88657 [paper, repository]

Sensory neurons couple arousal and foraging decisions in &lt;i&gt;Caenorhabditis elegans&lt;/i&gt;.

Journal: eLife

Authors' code: bargmannlab/scheer_bargmann2023 (MIT)

Status: code verified, 98 files readable, 23 matches

Tuesday, 26 December 2023 (10 papers)

[31278] doi:10.1002/1878-0261.13569 [paper, data]

Development of an optimized, non-stem cell line for intranasal delivery of therapeutic cargo to the central nervous system.

Journal: Molecular oncology

Status: data only, 2 datasets cited

[31279] doi:10.1007/s12975-023-01228-3 [paper, data]

Inhibition of USP30 Promotes Mitophagy by Regulating Ubiquitination of MFN2 by Parkin to Attenuate Early Brain Injury After SAH.

Journal: Translational stroke research

Status: data only, 1 dataset cited

[31280] doi:10.1016/j.isci.2023.108640 [paper, repository]

Prediction error drives associative learning and conditioned behavior in a spiking model of Drosophila larva.

Journal: iScience

Authors' code: nawrotlab/PEcodingDosophilaMB (no license), learnmem.cshlp.org/content/26 (no license), nawrotlab/larvaworld (MIT)

Status: code verified, 434 files readable, 6 matches

[31281] doi:10.1016/j.patter.2023.100895 [paper, repository]

A critical period for developing face recognition.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 10014797 (other-open)

Status: code verified, 41 files readable, 5 matches

[31282] doi:10.1016/j.xcrm.2023.101347 [paper, repository]

An electroencephalographic signature predicts craving for methamphetamine.

Journal: Cell reports. Medicine

Authors' code: weiwen-tian/eeg_mud (no license)

Status: code verified, 4 files readable, 1 match

[31283] doi:10.1073/pnas.2308706120 [paper, data]

Social anxiety disorder-associated gut microbiota increases social fear.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[31284] doi:10.1073/pnas.2317987121 [paper, repository]

Basal forebrain cholinergic activity is necessary for upward firing rate homeostasis in the rodent visual cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 187710 (CC-BY-4.0), turrigianoCodeSpace/JB_PNAS_paper (no license)

Status: code verified, 29 files readable, 11 matches

[31285] doi:10.1111/epi.17861 [paper]

Widespread, depth-dependent cortical microstructure alterations in pediatric focal epilepsy.

Journal: Epilepsia

Status: code on request

[31286] doi:10.1177/19714009231224442 [paper, data]

A semi-automatic segmentation method for meningioma developed using a variational approach model.

Journal: The neuroradiology journal

Status: data only, 1 dataset cited

[31287] doi:10.1523/eneuro.0308-23.2023 [paper, repository]

Internet-Connected Cortical Organoids for Project-Based Stem Cell and Neuroscience Education.

Journal: eNeuro

Authors' code: braingeneers/iot_education_stem_cell_paper (BSD-3-Clause)

Status: code verified, 8 files readable, 5 matches

Monday, 25 December 2023 (2 papers)

[31288] doi:10.1016/j.ibneur.2023.12.005 [paper, data]

Abnormality in GABAergic postsynaptic transmission associated with anxiety in <i>Bronx waltzer</i> mice with an <i>Srrm4</i> mutation.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[31289] doi:10.3390/microorganisms12010037 [paper]

Gut Microbiota Ecological and Functional Modulation in Post-Stroke Recovery Patients: An Italian Study.

Journal: Microorganisms

Status: data only

Sunday, 24 December 2023 (2 papers)

[31290] doi:10.3390/brainsci14010022 [paper, data]

The Distant Molecular Effects on the Brain by Cancer Treatment.

Journal: Brain sciences

Status: data only, 1 dataset cited

[31291] doi:10.3390/medicina60010033 [paper]

Structural and Functional Changes in Mild Cognitive Impairment in Parkinson's Disease.

Journal: Medicina (Kaunas, Lithuania)

Status: code on request

Saturday, 23 December 2023 (3 papers)

[31292] doi:10.1007/s10548-023-01030-2 [paper, repository]

Exploring the Association Between EEG Microstates During Resting-State and Error-Related Activity in Young Children.

Journal: Brain topography

Authors' code: gaffreylab (no license)

Status: code verified

[31293] doi:10.1016/j.dcn.2023.101334 [paper, repository]

Subcortical and cerebellar volume differences in bilingual and monolingual children: An ABCD study.

Journal: Developmental cognitive neuroscience

Authors' code: OSF up7v8 (no license)

Status: code verified, 5 files readable, 3 matches

[31294] doi:10.3390/cells13010038 [paper, repository]

Super-Resolution Analysis of the Origins of the Elementary Events of ER Calcium Release in Dorsal Root Ganglion Neurons.

Journal: Cells

Authors' code: Zenodo 10157969 (CC-BY-4.0), xyspark.leeds.ac.uk (no license), ijayas/imagealigning (no license)

Status: code verified, 1 file readable

Friday, 22 December 2023 (29 papers)

[31295] doi:10.1007/s00259-023-06566-w [paper, repository]

Automated identification of uncertain cases in deep learning-based classification of dopamine transporter SPECT to improve clinical utility and acceptance.

Journal: European journal of nuclear medicine and molecular imaging

Authors' code: ThomasBudd/dat_spect_ud (MIT)

Status: code verified, 10 files readable

[31296] doi:10.1007/s00415-023-12132-z [paper, repository]

Predicting disease severity in multiple sclerosis using multimodal data and machine learning.

Journal: Journal of neurology

Authors' code: anafreire/sys4ms (no license)

Status: code verified, 6 files readable, 7 matches

[31297] doi:10.1016/j.neuroimage.2023.120503 [paper, repository]

A precision neuroscience approach to estimating reliability of neural responses during emotion processing: Implications for task-fMRI.

Journal: NeuroImage

Authors' code: IBIC/neuropointillist (MIT)

Status: code verified, 29 files readable, 2 matches

[31298] doi:10.1016/j.nsa.2023.103931 [paper, repository]

A machine learning pipeline for efficient differentiation between bipolar and major depressive disorder based on multimodal structural neuroimaging.

Journal: Neuroscience applied

Authors' code: fcalesella/CVPCR (GPL-3.0)

Status: code verified, 12 files readable, 2 matches

[31299] doi:10.1038/s41380-023-02346-y [paper, repository]

Ethanol's interaction with BK channel α subunit residue K361 does not mediate behavioral responses to alcohol in mice.

Journal: Molecular psychiatry

Authors' code: rethomics/zeitgebr (no license)

Status: code verified, 21 files readable

[31300] doi:10.1038/s41380-023-02361-z [paper, data]

Interplay between hippocampal TACR3 and systemic testosterone in regulating anxiety-associated synaptic plasticity.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[31301] doi:10.1073/pnas.2305414120 [paper, data]

Unsupervised embedding of trajectories captures the latent structure of scientific migration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[31302] doi:10.1093/braincomms/fcad352 [paper, repository]

Exploring individual fixel-based white matter abnormalities in epilepsy.

Journal: Brain communications

Authors' code: remikamito/spidey (no license)

Status: code verified, 4 files readable, 3 matches

[31303] doi:10.1117/1.jbo.28.12.126006 [paper, repository]

Restoration of metabolic functional metrics from label-free, two-photon human tissue images using multiscale deep-learning-based denoising algorithms.

Journal: Journal of biomedical optics

Authors' code: CSBDeep/CSBDeep (BSD-3-Clause), Tufts-University/Denoising2PImages (MIT)

Status: code verified, 80 files readable, 4 matches

[31304] doi:10.1126/sciadv.adi0497 [paper, repository]

Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children.

Journal: Science advances

Authors' code: Klepac-Ceraj-Lab/Resonance (MIT), Zenodo 7647510 (other-open)

Status: code verified, 70 files readable, 14 matches

[31305] doi:10.1126/sciadv.adi1899 [paper, repository]

Three-dimensional thermophotonic super-resolution imaging by spatiotemporal diffusion reversal method.

Journal: Science advances

Authors' code: Zenodo 8393242 (CC-BY-4.0)

Status: code verified, 2 files readable

[31306] doi:10.1136/gpsych-2023-101164 [paper, data]

Enhancing pain modulation: the efficacy of synchronous combination of virtual reality and transcutaneous electrical nerve stimulation.

Journal: General psychiatry

Status: data only, 1 dataset cited

[31307] doi:10.1162/netn_a_00324 [paper, repository]

Can hubs of the human connectome be identified consistently with diffusion MRI?

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: BMHLab/DegreeVariability (no license)

Status: code verified, 42 files readable, 3 matches

[31308] doi:10.1162/netn_a_00325 [paper, repository]

Static and dynamic fMRI-derived functional connectomes represent largely similar information.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: omidvarnia/Dynamic_brain_connectivity_analysis (no license), OSF xftdh (no license)

Status: code verified, 114 files readable, 6 matches

[31309] doi:10.1162/netn_a_00328 [paper, repository]

Top-down threat bias in pain perception is predicted by higher segregation between resting-state networks.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: nitrc.org/projects/fcon_1000 (no license)

Status: code verified

[31310] doi:10.1162/netn_a_00329 [paper, repository]

The effect of using group-averaged or individualized brain parcellations when investigating connectome dysfunction in psychosis.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: NSBLab/individualised_parc_psychosis (no license)

Status: code verified, 57 files readable, 6 matches

[31311] doi:10.1162/netn_a_00330 [paper, repository]

The human brain connectome weighted by the myelin content and total intra-axonal cross-sectional area of white matter tracts.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: TardifLab/Weighted-SC-Networks (GPL-3.0)

Status: code verified, 128 files readable, 19 matches

[31312] doi:10.1162/netn_a_00331 [paper, repository]

Toward stability of dynamic FC estimates in neuroimaging and electrophysiology: Solutions and limits.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: sonsolesalonsomartinez/reproducibleHMM (no license)

Status: code verified, 2 files readable, 4 matches

[31313] doi:10.1162/netn_a_00336 [paper, repository]

Cognitive and perceptual load have opposing effects on brain network efficiency and behavioral variability in ADHD.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: OSF 9byvq (no license), medianeuroscience/asteroid_impact (CC-BY-SA-4.0), asteroidimpact/asteroid_impact_py3 (CC-BY-SA-4.0)

Status: code verified, 48 files readable

[31314] doi:10.1162/netn_a_00337 [paper, repository]

Modeling the cell-type-specific mesoscale murine connectome with anterograde tracing experiments.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: alleninstitute/mouse_connectivity_models (BSD-2-Clause)

Status: code verified, 103 files readable

[31315] doi:10.1523/eneuro.0374-22.2023 [paper, repository]

Behavioral Validation of Individualized Low-Intensity Transcranial Electrical Stimulation (tES) Protocols.

Journal: eNeuro

Authors' code: caryse/tDCS_dosecontrol (GPL-3.0)

Status: code verified, 11 files readable, 1 match

[31316] doi:10.3389/fendo.2023.1286931 [paper, data]

Allopregnanolone pleiotropic action in neurons and astrocytes: calcium signaling as a unifying mechanism.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[31317] doi:10.3389/fnagi.2023.1260630 [paper, repository]

Different impulse control disorder evolution patterns and white matter microstructural damage in the progression of Parkinson's disease.

Journal: Frontiers in aging neuroscience

Authors' code: jyeatman/AFQ (gnu)

Status: code verified, 165 files readable, 5 matches

[31318] doi:10.3389/fninf.2023.1223687 [paper, repository]

AngoraPy: A Python toolkit for modeling anthropomorphic goal-driven sensorimotor systems.

Journal: Frontiers in neuroinformatics

Authors' code: ccnmaastricht/angorapy (GPL-3.0)

Status: code verified, 147 files readable, 9 matches

[31319] doi:10.3390/brainsci14010010 [paper, repository]

Mortality Prediction of Patients with Subarachnoid Hemorrhage Using a Deep Learning Model Based on an Initial Brain CT Scan.

Journal: Brain sciences

Authors' code: neurolabusc/Clinical (BSD-2-Clause), frankkramer-lab/aucmedi (GPL-3.0), smcch/Subarachnoid_Hemorrhage_segmentation_and_mortality_prediction (other)

Status: code verified, 230 files readable, 14 matches

[31320] doi:10.3390/s24010077 [paper, data]

Automatic Seizure Detection Based on Stockwell Transform and Transformer.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[31321] doi:10.7554/elife.86365 [paper, repository]

BrainPy, a flexible, integrative, efficient, and extensible framework for general-purpose brain dynamics programming.

Journal: eLife

Authors' code: brainpy.readthedocs.io (no license), brainpy/examples (GPL-3.0), brainpy/brainpy-elife-reproducibility (no license)

Status: code verified, 210 files readable, 9 matches

[31322] doi:10.7554/elife.86749 [paper, data]

Imaging microglia surveillance during sleep-wake cycles in freely behaving mice.

Journal: eLife

Status: data only, 1 dataset cited

[31323] doi:10.7554/elife.89221 [paper, data]

PAK3 downregulation induces cognitive impairment following cranial irradiation.

Journal: eLife

Status: data only, 2 datasets cited

Thursday, 21 December 2023 (36 papers)

[31324] doi:10.1016/j.dcn.2023.101332 [paper, data]

Structural neural connectivity correlates with pre-reading abilities in preschool children.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[31325] doi:10.1016/j.molmet.2023.101858 [paper]

A forebrain-hypothalamic ER stress driven circuit mediates hepatic steatosis during obesity.

Journal: Molecular metabolism

Status: code on request

[31326] doi:10.1016/j.neuri.2023.100155 [paper, repository]

A curious case of retrogenesis in language: Automated analysis of language patterns observed in dementia patients and young children.

Journal: Neuroscience informatics

Authors' code: LinguisticAnomalies/harmonized-toolkit (no license)

Status: code verified, 19 files readable

[31327] doi:10.1016/j.stemcr.2023.11.009 [paper, data]

Interspecies chimerism with human embryonic stem cells generates functional human dopamine neurons at low efficiency.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[31328] doi:10.1016/j.ynirp.2023.100194 [paper, repository]

Validation of a semi-automated method to quantify lesion volume changes in multiple sclerosis on 2D proton-density-weighted scans based on image subtraction.

Journal: Neuroimage. Reports

Authors' code: sbig/lesionchange (no license)

Status: code verified, 7 files readable, 4 matches

[31329] doi:10.1021/acscentsci.3c00592 [paper, repository]

Antibodies Raised Against an Aβ Oligomer Mimic Recognize Pathological Features in Alzheimer's Disease and Associated Amyloid-Disease Brain Tissue.

Journal: ACS central science

Authors' code: rcsb.org/structure/7u4p (no license)

Status: code verified

[31330] doi:10.1038/s41380-023-02329-z [paper]

Inactivation of hypocretin receptor-2 signaling in dopaminergic neurons induces hyperarousal and enhanced cognition but impaired inhibitory control.

Journal: Molecular psychiatry

Status: code on request

[31331] doi:10.1038/s41467-023-44011-6 [paper, repository]

Theta mediated dynamics of human hippocampal-neocortical learning systems in memory formation and retrieval.

Journal: Nature communications

Authors' code: Yassa-TNL/theta_physiology (GPL-3.0)

Status: code verified, 165 files readable, 9 matches

[31332] doi:10.1038/s41467-023-44163-5 [paper, repository]

Hypothalamic CRH neurons represent physiological memory of positive and negative experience.

Journal: Nature communications

Authors' code: leomol/FPA (GPL-3.0), modeldb:2015420 (no license), Zenodo 5708470 (GPL-3.0)

Status: code verified, 66 files readable, 2 matches

[31333] doi:10.1038/s41467-023-44248-1 [paper, repository]

Asymmetric coding of reward prediction errors in human insula and dorsomedial prefrontal cortex.

Journal: Nature communications

Authors' code: hoycw/asymmetric_RPE_paper (no license), OSF jgxfr (no license), Zenodo 10032478 (CC-BY-4.0)

Status: code verified, 888 files readable, 21 matches

[31334] doi:10.1038/s41592-023-02098-1 [paper, data]

The Cousa objective: a long-working distance air objective for multiphoton imaging in vivo.

Journal: Nature methods

Status: data only, 1 dataset cited

[31335] doi:10.1038/s41598-023-49121-1 [paper, data]

Number agreement processing in adolescents with and without developmental language disorder (DLD): evidence from event-related brain potentials.

Journal: Scientific reports

Status: data only, 1 dataset cited

[31336] doi:10.1038/s41598-023-49503-5 [paper, repository]

Communities in C. elegans connectome through the prism of non-backtracking walks.

Journal: Scientific reports

Authors' code: kipolovnikov/celegans_nonbacktracking (MIT)

Status: code verified, 4 files readable

[31337] doi:10.1073/pnas.2300842120 [paper, repository]

Genomic loci influence patterns of structural covariance in the human brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: cbica.upenn.edu/bridgeport (no license), pypi.org/project/sopnmf (no license), pypi.org/project/mlni (no license), bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

[31338] doi:10.1085/jgp.202313368 [paper, repository]

Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel.

Journal: The Journal of general physiology

Authors' code: Zenodo 10072409 (MIT), Zenodo 10072410 (MIT)

Status: code verified, 22 files readable

[31339] doi:10.1111/acel.14033 [paper, data]

Genetic context drives age-related disparities in synaptic maintenance and structure across cortical and hippocampal neuronal circuits.

Journal: Aging cell

Status: data only, 2 datasets cited

[31340] doi:10.1111/ejn.16211 [paper, data]

Prefrontal cortex hemodynamic activity during a test of lower extremity functional muscle strength in children with cerebral palsy: A functional near-infrared spectroscopy study.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[31341] doi:10.1162/imag_a_00051 [paper, repository]

Unique information from common diffusion MRI models about white-matter differences across the human adult lifespan.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: RafaelNH/CamCAN-dMRI-study (CC-BY-4.0)

Status: code verified, 33 files readable, 7 matches

[31342] doi:10.1186/s40478-023-01686-8 [paper, repository]

Unsupervised machine learning identifies distinct ALS molecular subtypes in post-mortem motor cortex and blood expression data.

Journal: Acta neuropathologica communications

Authors' code: KHP-Informatics/HierarchicalClusteringALS (MIT)

Status: code verified, 7 files readable, 5 matches

[31343] doi:10.1371/journal.pbio.3002442 [paper, repository]

A chemical signal in human female tears lowers aggression in males.

Journal: PLoS biology

Authors' code: shaniagron/human-emotional-tears-blocks-aggression (no license)

Status: code verified, 101 files readable, 2 matches

[31344] doi:10.1371/journal.pone.0266586 [paper, data]

Cortical effects of wrist tendon vibration during an arm tracking task in chronic stroke survivors: An EEG study.

Journal: PloS one

Status: data only, 1 dataset cited

[31345] doi:10.1371/journal.pone.0291576 [paper, repository]

Investigation of the neural correlation with task performance and its effect on cognitive load level classification.

Journal: PloS one

Authors' code: mathworks.com/matlabcentral/fileexchange (no license)

Status: code found, still to be checked

[31346] doi:10.1371/journal.ppat.1011817 [paper, repository]

Brain tropism acquisition: The spatial dynamics and evolution of a measles virus collective infectious unit that drove lethal subacute sclerosing panencephalitis.

Journal: PLoS pathogens

Authors' code: jbloomlab/mev_sspe_dynamics (no license), pysam-developers/pysam (MIT)

Status: code verified, 490 files readable, 5 matches

[31347] doi:10.3389/fgwh.2023.1320640 [paper, repository]

Cardiometabolic health across menopausal years is linked to white matter hyperintensities up to a decade later.

Journal: Frontiers in global women's health

Authors' code: OSF 4ub83 (no license)

Status: code verified, 2 files readable, 1 match

[31348] doi:10.3389/fncel.2023.1288437 [paper, data]

The role of sphingosine-1-phosphate in the development and progression of Parkinson's disease.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[31349] doi:10.3389/fneur.2023.1306129 [paper, repository]

Comparison of state-of-the-art deep learning architectures for detection of freezing of gait in Parkinson's disease.

Journal: Frontiers in neurology

Authors' code: emilieklaver/FOG_Detection (no license), OSF x5a2t (no license)

Status: code verified, 10 files readable, 5 matches

[31350] doi:10.3389/fnimg.2023.1138193 [paper, repository]

Recalibrating single-study effect sizes using hierarchical Bayesian models.

Journal: Frontiers in neuroimaging

Authors' code: zh1peng/paper_code (no license)

Status: code verified, 212 files readable, 8 matches

[31351] doi:10.3389/fnins.2023.1308829 [paper, repository]

A latent code based multi-variable modulation network for susceptibility mapping.

Journal: Frontiers in neuroscience

Authors' code: JoeWillbe/LCMnet (MIT)

Status: code verified, 13 files readable, 2 matches

[31352] doi:10.3389/fnint.2023.1027382 [paper, repository]

Brain morphological variability between whites and African Americans: the importance of racial identity in brain imaging research.

Journal: Frontiers in integrative neuroscience

Authors' code: Daniel-atilano/HCP_structural_analysis (GPL-3.0)

Status: code verified, 3 files readable, 4 matches

[31353] doi:10.3389/fnmol.2023.1308610 [paper, repository]

Plasma cell-free RNA profiling of Vietnamese Alzheimer's patients reveals a linkage with chronic inflammation and apoptosis: a pilot study.

Journal: Frontiers in molecular neuroscience

Authors' code: miti08/VAN-R-scripts (MIT)

Status: code verified, 5 files readable, 7 matches

[31354] doi:10.3389/fphys.2023.1284673 [paper, data]

Cholecystokinin-A signaling regulates automaticity of pacemaker cardiomyocytes.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[31355] doi:10.3389/fpsyg.2023.1211528 [paper, data]

A novel technique for delineating the effect of variation in the learning rate on the neural correlates of reward prediction errors in model-based fMRI.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[31356] doi:10.3389/fpsyg.2023.1268926 [paper, data]

Identifying and regulating emotions after acquired brain injury: the role of interoceptive sensibility.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[31357] doi:10.3390/biom14010014 [paper, repository]

Evaluation of Myocilin Variant Protein Structures Modeled by AlphaFold2.

Journal: Biomolecules

Authors' code: alphafold.hegelab.org (no license)

Status: code verified

[31358] doi:10.4103/1673-5374.391309 [paper]

OSMR is a potential driver of inflammation in amyotrophic lateral sclerosis.

Journal: Neural regeneration research

Status: data only

[31359] doi:10.7554/elife.83722 [paper, repository]

Interpersonal alignment of neural evidence accumulation to social exchange of confidence.

Journal: eLife

Authors' code: jimmy-2016/confmatcheeg (no license), jimmyesmaily/confmatch (no license)

Status: code verified, 27 files readable

Wednesday, 20 December 2023 (30 papers, 1 on this page)

[31360] doi:10.1002/hbm.26539 [paper, repository]

Decreased long-range temporal correlations in the resting-state functional magnetic resonance imaging blood-oxygen-level-dependent signal reflect motor sequence learning up to 2 weeks following training.

Journal: Human brain mapping

Authors' code: athschmidt/mmpi (no license)

Status: code verified, 14 files readable, 1 match

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