Every paper, by date

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 1 of 200: 12 November 2026 to 1 October 2026.

Thursday, 12 November 2026 (4 papers)

[1] doi: [paper, data]

Asymmetric encoder-decoder U-net with hybrid attention and residual dilated convolution for brain tumor segmentation

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[2] Code ↔ Paper doi: [paper, repository]

TSCNet: transformer-simplicial convolutional network for functional brain network classification

Journal: Frontiers in medicine

Authors' code: 922397935/tscnet_main_v1 (no license)

Status: code verified, 30 files readable, 2 matches

[3] doi: [paper, data]

Reward coding across mouse visual cortical areas

Journal: Frontiers in behavioral neuroscience

Status: code on request, 2 datasets cited

[4] Code ↔ Paper doi: [paper, repository]

Cholinergic blockade reveals a role for human hippocampal theta in memory encoding but not retrieval

Journal: eLife

Authors' code: tgedankien/AR_scopolamine (MIT)

Status: empty repository, 2 files readable

Wednesday, 11 November 2026 (4 papers)

[5] Code ↔ Paper doi:10.1083/jcb.202604185 [paper, repository]

The Cxcl14 chemokine defines pioneer axon guidance and early circuit assembly in the inner ear.

Journal: The Journal of cell biology

Authors' code: anechipor/Rumbo_et_al_2026 (no license)

Status: code verified, 1 file readable, 2 matches

[6] Code ↔ Paper doi:10.1098/rsos.261544 [paper, repository]

Structurally related Ca<sup>2+</sup>-release activated Ca<sup>2+</sup> channel inhibitors exhibit distinct extracellular and intracellular modes of action.

Journal: Royal Society open science

Authors' code: Zenodo 21357627 (CC-BY-4.0), doi:10.6084/m9.figshare.c.8775182 (no license)

Status: code verified

[7] doi: [paper, data]

The alarmin IL33 marks a thymocyte dependent shift in the makeup of cortical thymic epithelial cells

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[8] Code ↔ Paper doi: [paper, repository]

Two minds, one body: neural correlates of processing of We-information during shared control over a humanoid robot

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.8718634 (no license)

Status: code found, still to be checked

Tuesday, 10 November 2026 (9 papers)

[9] doi:10.1007/s10585-026-10449-3 [paper]

Mapping intratumoral coverage of neural stem cell-delivered anti-HER2 antibody in breast cancer brain metastasis.

Journal: Clinical & experimental metastasis

Status: code on request

[10] Code ↔ Paper doi:10.1093/nargab/lqag140 [paper, repository]

scMINA: an interpretable workflow for paired scRNA-scATAC multiome integration and regulatory prioritization.

Journal: NAR genomics and bioinformatics

Authors' code: quon-titative-biology/scpair (MIT), bioFAM/mofapy2 (LGPL-3.0), bioFAM/mofax (MIT), ShuwenZhangswz/scMINA (MIT), Zenodo 19582768 (MIT)

Status: code verified, 113 files readable, 9 matches

[11] doi:10.1111/joa.70248 [paper, data]

Expression of the neurodevelopmental disease susceptibility genes CADM1 and CADM2 in the early human fetal forebrain.

Journal: Journal of anatomy

Status: data only, 1 dataset cited

[12] Code ↔ Paper doi:10.1186/s12874-026-03050-5 [paper, repository]

A comprehensive simulation study evaluating the predictive performance of Cox proportional hazards model and machine learning methods for time-to-event data.

Journal: BMC medical research methodology

Authors' code: Josline90/Cox-vs-ML-models-for-time-to-event-data_A-simulation-study (no license)

Status: code verified, 9 files readable, 4 matches

[13] Code ↔ Paper doi:10.1371/journal.pone.0338580 [paper, repository]

Testing for interactions in multivariate data.

Journal: PloS one

Authors' code: wpennyUEA/MLC (no license)

Status: code verified, 134 files readable, 12 matches

[14] Code ↔ Paper doi:10.1523/eneuro.0146-26.2026 [paper, repository]

Remembered Event Features Shape Default Mode Network Engagement during Emotional Memory Recall.

Journal: eNeuro

Authors' code: memobc/reframe-detail-paper (no license)

Status: code verified, 7 files readable, 1 match

[15] doi:10.26508/lsa.202603770 [paper, data]

Mitochondrial protein import stress augments α-synuclein aggregation and neural damage.

Journal: Life science alliance

Status: code on request, 1 dataset cited

[16] Code ↔ Paper doi:10.7554/elife.106826 [paper, repository]

Midbrain somatostatin-expressing cells control pain-suppression during defensive states.

Journal: eLife

Authors' code: djercog/TestoFreez (MIT)

Status: code verified, 3 files readable

[17] doi: [paper, data]

Dual-feature selectivity enables bidirectional coding in visual cortical neurons

Journal: eLife

Status: data only, 1 dataset cited

Monday, 9 November 2026 (8 papers)

[18] doi:10.1002/advs.78714 [paper, data]

LepR-Lineage Cells Represent the Main Target of the Nociceptive CGRP Pathway in White Adipose Tissue Browning.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[19] doi:10.1007/s11011-026-02017-1 [paper, data]

The protection of chronic cerebral ischemia by Hua-Feng-Dan involves the modulation of hippocampal transcriptome and gut dysbiosis.

Journal: Metabolic brain disease

Status: data only, 1 dataset cited

[20] doi:10.1007/s11060-026-05870-3 [paper]

Pre-operative stereotactic radiosurgery versus intraoperative cesium-131 brachytherapy for resected brain metastases: a systematic review and meta-analysis.

Journal: Journal of neuro-oncology

Status: code on request

[21] Code ↔ Paper doi:10.1038/s41467-026-77651-5 [paper, repository]

Single-cell machine learning uncovers genetically anchored, cell-type specific programs of Alzheimer's disease.

Journal: Nature communications

Authors' code: AdiVM/TriSCOPE_RNASeq_Alzheimers_Analysis (MIT), Zenodo 21793738 (MIT)

Status: code verified, 220 files readable, 40 matches

[22] Code ↔ Paper doi:10.1038/s41467-026-79055-x [paper, repository]

Calpain-mediated TBP cleavage disturbs neuronal AMOT-YAP1 signalling.

Journal: Nature communications

Authors' code: Zenodo 22231266 (CC-BY-4.0)

Status: code verified

[23] Code ↔ Paper doi:10.1162/imag.a.1447 [paper, repository]

The MTL200: A surface-based, probabilistic atlas of the medial temporal lobe.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: SocialMemoryLab/MTL200 (CC-BY-4.0)

Status: code verified, 14 files readable, 4 matches

[24] doi:10.1186/s41016-026-00452-8 [paper, data]

Beyond the cortex, early deficits, late recovery: a systematic review of language outcomes and subcortical mapping after awake craniotomy for diffuse gliomas.

Journal: Chinese neurosurgical journal

Status: data only, 1 dataset cited

[25] doi:10.7554/elife.109861 [paper, data]

Dual-feature selectivity enables bidirectional coding in visual cortical neurons.

Journal: eLife

Status: data only, 1 dataset cited

Friday, 6 November 2026 (11 papers)

[26] Code ↔ Paper doi:10.1007/s00422-026-01074-0 [paper, repository]

Multiple mechanisms of rhythm switching in recurrent neural networks with adaptive time constants.

Journal: Biological cybernetics

Authors' code: cncs-fit/rnn-rhythm (MIT), Zenodo 21900320 (MIT)

Status: code verified, 54 files readable, 30 matches

[27] Code ↔ Paper doi:10.1038/s41467-026-78777-2 [paper, repository]

Redundancy maximization as a principle of associative memory learning in Hopfield networks.

Journal: Nature communications

Authors' code: Priesemann-Group/Infomorphic_Networks (BSD-3-Clause)

Status: code verified, 41 files readable, 4 matches

[28] Code ↔ Paper doi:10.1038/s41746-026-03424-5 [paper, repository]

Evaluation of PainWaive: a consumer-grade EEG headset for remote EEG monitoring and neurofeedback research in chronic pain.

Journal: NPJ digital medicine

Authors' code: DrNahianC/PainWaive-Evaluation-Paper (no license)

Status: code verified, 2 files readable, 6 matches

[29] doi:10.1126/sciadv.aea3106 [paper]

Brainstem enkephalinergic neural circuit underlying cold-induced pain relief in mice.

Journal: Science advances

Status: data only

[30] Code ↔ Paper doi:10.1126/sciadv.aej4381 [paper, repository]

CD8<sup>+</sup> T cells induce RIPK1-regulated brain endothelial cell death in cerebral malaria.

Journal: Science advances

Authors' code: Zenodo 22685549 (no license)

Status: dead link

[31] Code ↔ Paper doi:10.1371/journal.pone.0353088 [paper, repository]

Intravenous midazolam alters short-interval paired-pulse TMS responses differently in younger and older adults.

Journal: PloS one

Authors' code: Zenodo 20734853 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[32] Code ↔ Paper doi:10.7554/elife.109742 [paper, repository]

Simple methods to acutely measure multiple timing metrics among the sexual repertoire of male <i>Drosophila</i>.

Journal: eLife

Authors' code: hcls-kimlab/drosomating (MIT), liuxiao916/Fruit_Flies (MIT)

Status: code verified, 24 files readable

[33] Code ↔ Paper doi:10.7554/elife.110315 [paper, repository]

Expectation-driven gain modulation of preparatory spatial attention.

Journal: eLife

Authors' code: OSF 46a3x (no license), dvanmoorselaar/DvM (MIT), dvanmoorselaar/open_dvm (MIT)

Status: code verified, 150 files readable, 11 matches

[34] Code ↔ Paper doi: [paper, repository]

Common transcriptional changes in the brain during hibernation and Alzheimer’s disease

Journal: Science advances

Authors' code: aertslab/create_cisTarget_databases (no license), Zenodo 5751297 (other-open), vib-singlecell-nf/scenic (no license), vib-singlecell-nf/vsn-pipelines (GPL-3.0)

Status: code verified, 185 files readable, 5 matches

[35] Code ↔ Paper doi: [paper, repository]

A functional connectome identifies vulnerability to cognitive decline and Alzheimer’s disease progression

Journal: Science advances

Authors' code: Zenodo 20073656 (CC-BY-4.0), zhangyubrain/Alzheimers-resilient-connectome (no license)

Status: code verified, 4 files readable, 3 matches

[36] Code ↔ Paper doi: [paper, repository]

Ultrasound neural interface enabling acute spinal cord monitoring and blood flow modulation

Journal: Science advances

Authors' code: Zenodo 22908234 (no license), Zenodo 22907737 (Apache-2.0), Zenodo 22908477 (no license)

Status: code verified, 282 files readable, 2 matches

Thursday, 5 November 2026 (2 papers)

[37] Code ↔ Paper doi: [paper, repository]

Anisotropic conductivity modeling for tDCS in Parkinson’s disease using multidimensional diffusion MRI

Journal: Frontiers in human neuroscience

Authors' code: santioso-hue/MRE-tDCS-PD (MIT)

Status: code verified, 40 files readable, 21 matches

[38] doi: [paper, data]

Language usage shapes neural mechanisms of code-switching

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

Wednesday, 4 November 2026 (2 papers)

[39] Code ↔ Paper doi:10.1088/1741-2552/aeb82d [paper, repository]

NeuroTest: a benchtop testbed for evaluating sensing-capable electrophysiology and neurostimulation systems.

Journal: Journal of neural engineering

Authors' code: uw-herron-lab/NeuroTest-Board (other)

Status: code verified, 11 files readable

[40] doi: [paper, data]

EEG emotion-recognition datasets for neuroarchitecture: an appraisal of openness, AI-readiness and ontology maturity

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

Tuesday, 3 November 2026 (3 papers)

[41] Code ↔ Paper doi:10.1088/1741-2552/aeb331 [paper, repository]

GROND: automated characterization of periodic and rhythmic EEG patterns.

Journal: Journal of neural engineering

Authors' code: bdsp-core/grond (CC-BY-NC-4.0)

Status: code verified, 436 files readable, 40 matches

[42] doi: [paper]

Inter-subject receive-template substitution for quantitative brain water content mapping at 3 T: a leave-one-out evaluation

Journal: Frontiers in neuroscience

Status: code on request

[43] doi: [paper, data]

A hybrid CNN–BiLSTM network with additive attention for automated four-stage classification of Alzheimer's disease from brain MRI

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

Monday, 2 November 2026 (6 papers)

[44] doi:10.1002/advs.78530 [paper, data]

Reln mRNA Delivery Drives Neurogenic Bone Regeneration by Orchestrating Schwann Cell-Mediated Exosomal Trafficking.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[45] doi:10.1002/mdc3.70886 [paper, data]

No Additional Benefit of 185 Hz Versus 130 Hz at Equivalent Energy in Deep Brain Stimulation for Tremor: A Randomized Prospective Clinical Trial.

Journal: Movement disorders clinical practice

Status: data only, 1 dataset cited

[46] Code ↔ Paper doi:10.1038/s41467-026-78908-9 [paper, repository]

Reconstructing the single-cell spatiotemporal dynamics of glioblastoma invasion.

Journal: Nature communications

Authors' code: Gliomethods/GlioTrace (Apache-2.0), doi:10.5281/zenodo-21996609 (no license)

Status: code verified, 45 files readable, 17 matches

[47] Code ↔ Paper doi:10.1172/jci195110 [paper, repository]

Cerebellar and frontal lobe alterations in pulmonary hypertension implicate an inflammatory lung vascular/brain axis.

Journal: The Journal of clinical investigation

Authors' code: PittVMIOSB/Okawa_et_al (no license)

Status: code verified, 5 files readable, 2 matches

[48] doi:10.2196/94282 [paper, data]

Exchange of High-Frequency Medical Monitoring Data Using Fast Healthcare Interoperability Resources for Interoperable Integration Into Clinical Practice and Research: Methodological Development Study.

Journal: JMIR medical informatics

Status: data only, 2 datasets cited

[49] Code ↔ Paper doi:10.7554/elife.107110 [paper, repository]

Behavioural and neurogenetic evidence for emotion primitives in the fruit fly <i>Drosophila</i> from an open field test.

Journal: eLife

Authors' code: r-project.org (no license), supp:PMC13727074/elife-107110-code1.zip (no license), supp:PMC13727074/elife-107110-code2.zip (no license)

Status: code verified

Sunday, 1 November 2026 (24 papers)

[50] Code ↔ Paper doi:10.1002/acm2.70886 [paper, repository]

Technical development and implementation of 3D-QALAS on a 1.5T MR-Linac for the brain: A prospective R-IDEAL stage 0/1 technology development report.

Journal: Journal of applied clinical medical physics

Authors' code: Lucas-Mc/QALAS-MRL_R-IDEAL_0-1 (GPL-3.0)

Status: code verified, 3 files readable

[51] Code ↔ Paper doi:10.1002/ctm2.70862 [paper, repository]

The microbiome and brain metastasis in non-small cell lung cancer: A graded appraisal and a framework for prevention-oriented research.

Journal: Clinical and translational medicine

Authors' code: sjdlabgroup/SAHMI (other)

Status: code verified, 11 files readable

[52] Code ↔ Paper doi:10.1002/glia.70220 [paper, repository]

Müller Glia Subtypes Define Neuro-Glial Associations and Spatial Morphogen Axes in the Zebrafish Retina.

Journal: Glia

Authors' code: s-storey/storey-muller-glia-heterogeneity-2026 (no license)

Status: code verified, 9 files readable, 16 matches

[53] Code ↔ Paper doi:10.1002/glia.70230 [paper, repository]

Glial Dysfunction and Memory Impairments in a Model of Pediatric Obstructive Sleep Apnea.

Journal: Glia

Authors' code: cjy8s/Glial-Dysfunction-POSA (no license)

Status: code verified, 2 files readable, 2 matches

[54] doi:10.1002/glia.70236 [paper, data]

Cell Surface Markers Identify Astrocyte Subpopulations in the Adult Hippocampus With a Heterogeneous Response to Aging.

Journal: Glia

Status: data only, 1 dataset cited

[55] doi:10.1002/glia.70238 [paper, data]

Novel Na<sub>V</sub>1.6-Mitochondrial Complexes in Retinal Astrocyte Pockets Sequester GABA.

Journal: Glia

Status: data only, 1 dataset cited

[56] doi:10.1002/hbm.70640 [paper, data]

Functional Network Organization Underlying Individual Differences in False Feedback Susceptibility: A Graph Theoretical Analysis.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[57] Code ↔ Paper doi:10.1002/hipo.70137 [paper, repository]

Temporal Interference Modulates Medial Temporal and Frontoparietal Activity During Mnemonic Discrimination: A High-Resolution Whole-Brain fMRI Investigation.

Journal: Hippocampus

Authors' code: celstark/MST (no license)

Status: code verified, 21 files readable

[58] Code ↔ Paper doi:10.1002/hipo.70139 [paper, repository]

Quantitative Assessment of Mesoscale Cellular Order and Organization in the Mouse Hippocampus.

Journal: Hippocampus

Authors' code: gitlab.mpcdf.mpg.de/konmi/image-analysis-ui (no license)

Status: code verified, 8 files readable, 3 matches

[59] Code ↔ Paper doi:10.1002/hipo.70141 [paper, repository]

The Strength of Target Representations Drives Mnemonic Discrimination: Evidence From Extended Delay and Hippocampal Damage.

Journal: Hippocampus

Authors' code: OSF sw69d (no license)

Status: code found, still to be checked

[60] Code ↔ Paper doi:10.1002/hipo.70144 [paper, repository]

Hippocampal Subfield Volumes and Spatial Memory Performance in Older Adults At-Risk for Type 2 Diabetes.

Journal: Hippocampus

Authors' code: Zenodo 7577008 (other-open), dpalmer9/touchcog (GPL-3.0)

Status: code verified, 55 files readable

[61] doi:10.1042/bcj20250110 [paper, data]

No lysine? No problem: the surprising roles of WNK kinases in physiology and disease.

Journal: The Biochemical journal

Status: data only, 5 datasets cited

[62] Code ↔ Paper doi:10.1093/bib/bbag601 [paper, repository]

ADInteractome: discovering Alzheimer's disease-associated gene interactions from single-nucleus RNA-seq data through neural interaction states.

Journal: Briefings in bioinformatics

Authors' code: Evan810828/ADInteractome (no license)

Status: code verified, 49 files readable, 6 matches

[63] doi:10.1093/brain/awag085 [paper, data]

Transcriptomic signature of frontotemporal lobar degeneration with TDP-43 type C pathology.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[64] Code ↔ Paper doi:10.1093/brain/awag105 [paper, repository]

Medial temporal lobe tau-neurodegeneration mismatch from structural imaging and plasma biomarkers.

Journal: Brain : a journal of neurology

Authors' code: xueying-lyu/mismatch (MIT), pyushkevich/cmrep (GPL-3.0)

Status: code verified, 116 files readable, 6 matches

[65] Code ↔ Paper doi:10.1093/brain/awag114 [paper, repository]

Quantitative pathology and APOE genotype reveal dementia risk and progression in Lewy body disease.

Journal: Brain : a journal of neurology

Authors' code: Zenodo 18315069 (CC-BY-4.0)

Status: code verified, 6 files readable, 7 matches

[66] doi:10.1093/brain/awag119 [paper, data]

Collapse of feed-forward inhibition underpins hyperexcitability in GABAA receptor gain-of-function epilepsy.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[67] doi:10.1093/brain/awag120 [paper]

Intracranial biomarkers for anterior thalamic deep brain stimulation in epilepsy: a long-term observational study.

Journal: Brain : a journal of neurology

Status: code on request

[68] Code ↔ Paper doi:10.1093/brain/awag204 [paper, repository]

Tyrosyl-tRNA sequestration triggers tyrosyl-tRNA synthetase-associated peripheral neuropathy.

Journal: Brain : a journal of neurology

Authors' code: AlexanderBartholomaeus/MiMB_ribosome_profiling (MIT)

Status: code verified, 16 files readable

[69] doi:10.1111/acel.70787 [paper, data]

TOP2A Maintains Heterochromatin Stability by Sustaining LMNB1 Expression to Counteract Senescence.

Journal: Aging cell

Status: data only, 1 dataset cited

[70] Code ↔ Paper doi:10.1111/cogs.70271 [paper, repository]

Computation or Weight Adaptation? Rethinking the Role of Plasticity in Learning.

Journal: Cognitive science

Authors' code: colab.research.google.com/drive/1llf_gxk9zq4yl6c7f3gnaz7fqsateimf (no license)

Status: code verified

[71] Code ↔ Paper doi:10.1111/jne.70298 [paper, repository]

Arcuate kisspeptin neurons display two types of calcium events: Regulation by sex, gonads, and senktide.

Journal: Journal of neuroendocrinology

Authors' code: syncytium2/KNDy-Ca-1 (MIT), gibson-amandag/ArcKissCa_analysis (no license)

Status: code verified, 301 files readable, 5 matches

[72] Code ↔ Paper doi:10.1111/mec.70614 [paper, repository]

Brain Transcriptomic Changes Associated With the Socially Regulated Behavioural Specialisation of Ant Queens.

Journal: Molecular ecology

Authors' code: supp:PMC13724878/MEC-35-e70614-s003.zip (no license)

Status: code verified, 1 file readable, 9 matches

[73] Code ↔ Paper doi: [paper, repository]

The human hippocampus supports auditory coding and multisensory integration

Journal: PLoS biology

Authors' code: omriraccah/multimem_fMRI_expt (no license), omriraccah/multimem_fMRI_analysis (MIT), Zenodo 22150287 (MIT)

Status: code verified, 63 files readable, 16 matches

Saturday, 31 October 2026 (2 papers)

[74] Code ↔ Paper doi: [paper, repository]

An automated EEG–ECG framework for CAP–HRV analysis: enabling brain–heart coupling studies in sleep disorders

Journal: Frontiers in physiology

Authors' code: ahsankhandoker/CAP-HRV (CC-BY-4.0)

Status: code verified, 7 files readable, 8 matches

[75] Code ↔ Paper doi: [paper, repository]

Brain PDGFRβ+ Cells Exhibit Diverse Reactive Phenotypes After Stroke Without Requiring KLF4

Journal: Glia

Authors' code: Zenodo 13948420 (CC-BY-4.0), elalilab/stroke_pdgfr-b_reactivity (no license)

Status: code verified, 71 files readable, 21 matches

Friday, 30 October 2026 (15 papers)

[76] Code ↔ Paper doi:10.1007/s12975-026-01503-z [paper, repository]

High Spatial Resolution ²³Na-MRI for Ischemic Brain Injury Detection.

Journal: Translational stroke research

Authors' code: tnnc.mgh.harvard.edu/method (no license)

Status: code verified

[77] Code ↔ Paper doi:10.1038/s41746-026-03406-7 [paper, repository]

AnySleep: a channel-agnostic deep learning system for high-resolution sleep staging in multi-center cohorts.

Journal: NPJ digital medicine

Authors' code: dslaborg/AnySleep (MIT), Zenodo 23764134 (MIT), Zenodo 23764135 (MIT)

Status: code verified, 96 files readable, 20 matches

[78] doi:10.1039/d6nr02497a [paper, data]

Sensitive detection of <i>in vivo</i> traumatic brain injury foci using magnetic particle imaging.

Journal: Nanoscale

Status: data only, 1 dataset cited

[79] Code ↔ Paper doi:10.1126/sciadv.ady5085 [paper, repository]

Decoder-FFPE-seq enables sensitive, genome-wide spatial transcriptomics of archival tissues at single-cell resolution.

Journal: Science advances

Authors' code: HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite (MIT), Zenodo 19872452 (CC-BY-4.0), Zenodo 19873057 (GPL-3.0), DynamicBiosystems/DynamicST (GPL-3.0), DynamicBiosystems/DynamicST-Assist (no license), Zenodo 19872995 (CC-BY-4.0), MIW-91/Decoder-FFPE-seq (no license), miw-91/dynamicst-assist (no license)

Status: code verified, 122 files readable, 22 matches

[80] Code ↔ Paper doi:10.1126/sciadv.aef9907 [paper, repository]

Intrinsic cellular persistent firing sustains hippocampal spatial representations during working memory.

Journal: Science advances

Authors' code: Zenodo 21775727 (CC-BY-4.0)

Status: code verified, 61 files readable, 9 matches

[81] Code ↔ Paper doi:10.1371/journal.pcbi.1014906 [paper, repository]

Interpretable embeddings of speech explain and enhance the brain encoding performance of audio models.

Journal: PLoS computational biology

Authors' code: Zenodo 22296432 (CC-BY-4.0)

Status: code verified, 61 files readable, 15 matches

[82] Code ↔ Paper doi:10.1371/journal.pone.0360923 [paper, repository]

An integrated machine learning framework for cerebral aneurysm rupture status classification using clinical, morphological, and hemodynamic features.

Journal: PloS one

Authors' code: mstf229/Cerebral-Aneurysm-Rupture-Prediction (no license)

Status: code verified, 3 files readable, 19 matches

[83] Code ↔ Paper doi:10.1371/journal.pone.0361502 [paper, repository]

BitterBuster: A virtual world for understanding naturalistic patch foraging.

Journal: PloS one

Authors' code: CoAxLab/BitterBusterTIER (no license), CoAxLab/BitterBusterForagingPaperRelease (CC-BY-NC-SA-4.0)

Status: code verified, 19 files readable, 1 match

[84] doi:10.1371/journal.pone.0361586 [paper, data]

A self-supervised reconstruction framework for segment-level detection of task-induced deviations in multi-channel EEG.

Journal: PloS one

Status: data only, 1 dataset cited

[85] Code ↔ Paper doi:10.7554/elife.102095 [paper, repository]

Distinct gradients of cortical architecture capture visual representations and behavior across the lifespan.

Journal: eLife

Authors' code: BNUCNL/VisualCortexGradient (GPL-3.0), gomezj/entorhinal_prf (no license)

Status: code verified, 55 files readable, 11 matches

[86] Code ↔ Paper doi:10.7554/elife.108212 [paper, repository]

Oxytocin neurons signal state-dependent transitions from rest to thermogenesis and behavioral arousal.

Journal: eLife

Authors' code: Zenodo 2652896 (other-open), j-landen/seq_process (MIT), j-landen/SGBS (MIT), OSF x9kcj (no license), gtatters/thermimagej (MIT)

Status: code verified, 24 files readable, 7 matches

[87] doi: [paper, data]

Genotype-specific molecular and functional trajectories in NGLY1 deficiency: a comparative multi-omics study of patient-derived iPSC neurons

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[88] doi: [paper]

Dissociating neural representations of multiple learned sensorimotor mappings

Journal: Frontiers in behavioral neuroscience

Status: code on request

[89] doi: [paper]

Neural Constrained Charge Equilibration for Extracting Charge Transport Parameters from Machine Learned Interatomic Potentials

Journal: ACS omega

Status: code on request

[90] Code ↔ Paper doi: [paper, repository]

Intrinsic cellular persistent firing sustains hippocampal spatial representations during working memory

Journal: Science advances

Authors' code: Zenodo 21775727 (CC-BY-4.0)

Status: code verified, 61 files readable, 9 matches

Thursday, 29 October 2026 (5 papers)

[91] doi:10.1002/advs.78567 [paper, data]

A UBE3A-UTX Proteostasis-Epigenetic Axis Governs Hypothalamic Energy Homeostasis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[92] doi:10.1371/journal.pone.0360314 [paper, data]

An interpretable multimodal deep learning model for physiological stress detection.

Journal: PloS one

Status: data only, 1 dataset cited

[93] Code ↔ Paper doi:10.1371/journal.pone.0360526 [paper, repository]

Sex- and age-specific development of ssRNA virus receptor expression in the human brain.

Journal: PloS one

Authors' code: OSF 4fgka (no license)

Status: code verified, 16 files readable, 26 matches

[94] Code ↔ Paper doi:10.1371/journal.pone.0360617 [paper, repository]

Understanding Glymphatic's Role In Proteinopathies (GRIP): A single centre case-control study protocol.

Journal: PloS one

Authors' code: jorgenriseth/grip-mixed (MIT)

Status: code verified, 4 files readable

[95] doi:10.1371/journal.pone.0361135 [paper, data]

A method for brain tumor detection and localization by means of deep learning and reliable prediction explainability.

Journal: PloS one

Status: data only, 3 datasets cited

Wednesday, 28 October 2026 (12 papers)

[96] Code ↔ Paper doi:10.1002/advs.78528 [paper, repository]

Disrupted Top-Down Modulation as a Mechanism of Impaired Multisensory Processing in Autistic Children.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: tvanneau/SFARI-AVSRT (no license)

Status: dead link

[97] Code ↔ Paper doi:10.1038/s41467-026-78769-2 [paper, repository]

Computational modeling and preclinical evaluation support targeting somatic instability for Huntington's disease treatment.

Journal: Nature communications

Authors' code: LatusBio/HD_Model_NatComm_Publication (no license), Zenodo 22118021 (CC-BY-4.0), Zenodo 22118020 (CC-BY-4.0)

Status: code verified, 15 files readable, 7 matches

[98] doi:10.1117/1.jbo.31.10.106006 [paper]

Development and validation of a low-cost, wearable near-infrared spectroscopy system for quantifying tissue water fraction in the human brain.

Journal: Journal of biomedical optics

Status: code on request

[99] Code ↔ Paper doi:10.1126/sciadv.aei2661 [paper, repository]

Presynaptic filopodia form kinapses and promote convective membrane flow to sustain synchronous neurotransmitter release.

Journal: Science advances

Authors' code: Zenodo 19667730 (CC-BY-4.0), jliu187/presynaptic-terminal-flow (no license)

Status: code verified, 8 files readable, 3 matches

[100] Code ↔ Paper doi:10.1371/journal.pcbi.1014878 [paper, repository]

Modeling reaction-diffusion processes in simplified to complex astroglial branchlet geometries using different simulation tools.

Journal: PLoS computational biology

Authors' code: google/neuroglancer (Apache-2.0), Zenodo 22041896 (GPL-3.0)

Status: code verified, 936 files readable, 21 matches

[101] Code ↔ Paper doi:10.1371/journal.pdig.0001127 [paper, repository]

Longitudinal patterns of digital parenting restrictions and adolescent screen use: Insights from the Adolescent Brain Cognitive Development (ABCD) study.

Journal: PLOS digital health

Authors' code: Daniel-Adan-Lopez/ABCD_ParentProfiles (no license)

Status: empty repository

[102] doi:10.1371/journal.pone.0360036 [paper, data]

The diminishing returns of distance: Computational analysis of approach-avoidance behavior under threat of predation.

Journal: PloS one

Status: data only, 1 dataset cited

[103] doi:10.1371/journal.pone.0361667 [paper, data]

Neural responses to dynamic versus static food cues: A pilot functional MRI study.

Journal: PloS one

Status: data only, 1 dataset cited

[104] Code ↔ Paper doi:10.1523/jneurosci.2108-25.2026 [paper, repository]

Synchronous Activity in the Auditory Forebrain Represents Temporal Landmarks in Vocal Communication Signals.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: gentnerlab/pyoperant (BSD-3-Clause), robince/gcmi (GPL-3.0), amirmasoud92/ZF_Neural_Decoding (no license)

Status: code verified, 197 files readable, 9 matches

[105] Code ↔ Paper doi:10.34133/cbsystems.0701 [paper, repository]

Beyond Static Representations: Learning Electroencephalogram Spatiotemporal Dynamics for Enhanced Emotion Recognition.

Journal: Cyborg and bionic systems (Washington, D.C.)

Authors' code: Raizeroko/DSE-TAM (no license)

Status: code verified, 16 files readable, 9 matches

[106] Code ↔ Paper doi:10.7554/elife.100827 [paper, repository]

Ultrasound neuromodulation hypotheses on the directionality of effects and community resource.

Journal: eLife

Authors' code: OSF arqp8 (no license)

Status: code verified, 3 files readable, 2 matches

[107] Code ↔ Paper doi:10.7554/elife.110314 [paper, repository]

Loose coupling between Ca<sup>2+</sup> channels and release sensors as a synaptic correlate of higher-order brain function.

Journal: eLife

Authors' code: Hartmut-Schmidt/eLife2026 (MIT)

Status: code verified, 7 files readable

Tuesday, 27 October 2026 (18 papers)

[108] Code ↔ Paper doi:10.1038/s41421-026-00928-y [paper, repository]

A droplet-based long-read single-cell epigenome sequencing method for the high-throughput profiling of multidimensional regulatory elements within individual cells.

Journal: Cell discovery

Authors' code: mskilab-org/gUtils (GPL-2.0), LuJiansen/dscNanoSeq (MIT), Zenodo 15102690 (CC-BY-4.0), LuJiansen/AS-C.Origami (no license), Zenodo 21389362 (CC-BY-4.0)

Status: code verified, 43 files readable, 8 matches

[109] Code ↔ Paper doi:10.1038/s42003-026-11157-0 [paper, repository]

A NEST-based framework unlocks massively parallel simulation of networks of multi-compartment neurons with customizable subcellular dynamics.

Journal: Communications biology

Authors' code: Zenodo 22878144 (CC-BY-4.0), willemwybo/wta-states (no license), jugit.fz-juelich.de/w.wybo/ca-adex (no license), Zenodo 10125416 (GPL-2.0), Zenodo 20757797 (GPL-2.0)

Status: code verified, 16 files readable, 5 matches

[110] Code ↔ Paper doi:10.1084/jem.20260104 [paper, repository]

Alzheimer's genetic risk factor CASS4 controls microglial focal adhesion biology and amyloidosis.

Journal: The Journal of experimental medicine

Authors' code: LukensLab (no license)

Status: code verified

[111] Code ↔ Paper doi:10.1162/imag.a.1397 [paper, repository]

Hemisphere fingerprinting: Identifying left and right hemispheres using functional connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: TrevorKMDay/hemidentification (no license), TrevorKMDay/glasser_LR_overlap (no license)

Status: code verified, 97 files readable, 10 matches

[112] Code ↔ Paper doi:10.1162/imag.a.1411 [paper, repository]

Bayesian brain mapping: A population-informed framework for personalized functional network topography and connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: statMINDlab/BBM-demo (no license), mandymejia/BayesBrainMap (no license)

Status: code verified, 67 files readable, 16 matches

[113] Code ↔ Paper doi:10.1162/imag.a.1415 [paper, repository]

A generative framework for estimating brain energy landscapes from continuous neuroimaging observations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: psalmhim/pMEM-EEGMEG (no license)

Status: code verified, 6 files readable, 7 matches

[114] Code ↔ Paper doi:10.1162/imag.a.1420 [paper, repository]

Substantial evidence against sex differences in bed nucleus of the stria terminalis volume in the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mattelisi/mlisi (no license), El-Suri/Substantial-evidence-against-sex-differences-in-bed-nucleus-of-the-stria-terminalis-volume (MIT)

Status: code verified, 61 files readable, 9 matches

[115] doi:10.1371/journal.pbio.3004041 [paper, data]

fruitless is essential for male Aedes aegypti mosquito attraction to female flight sounds.

Journal: PLoS biology

Status: data only, 1 dataset cited

[116] Code ↔ Paper doi:10.1371/journal.pcbi.1014879 [paper, repository]

Evolutionary and dynamic constraints converge on a conserved coupling sector in thermally adapted GH1 β-glucosidases.

Journal: PLoS computational biology

Authors' code: zh-l-t/GH1--Glucosidase (no license)

Status: code verified, 117 files readable, 4 matches

[117] Code ↔ Paper doi:10.1371/journal.pone.0360636 [paper, repository]

Causality-enhanced and symmetry-preserving PINNs for damped elastodynamic PDEs.

Journal: PloS one

Authors' code: shahbaz1982/Symmetry-PINNs- (MIT)

Status: code verified, 6 files readable, 3 matches

[118] doi:10.1371/journal.pone.0361297 [paper, data]

Practice-dependent changes in body representation but not in reaching distance following virtual tool-use.

Journal: PloS one

Status: data only, 1 dataset cited

[119] Code ↔ Paper doi:10.1523/eneuro.0394-25.2026 [paper, repository]

ACORN: Adaptive Consensus of Repeated Clusterings Identifies Pyramidal Neurons and Interneurons in the Primate Motor Cortex Based on Extracellular Spike Waveforms.

Journal: eNeuro

Authors' code: zolts/ACORN (no license)

Status: code verified, 7 files readable, 3 matches

[120] doi:10.2106/jbjs.oa.26.00303 [paper]

Suture-Button Fixation Provides a Statistically But Not Clinically Important Improvement in Function for Syndesmotic Injuries in Unstable Ankle Fractures: A Systematic Review and Network Meta-Analysis of Randomized Controlled Trials.

Journal: JB & JS open access

Status: code on request

[121] doi:10.34133/bmr.0431 [paper, data]

Glial Scar-Targeted Modification of Hepatocyte Growth Factor-Derived Peptide for Spinal Cord Injury Therapeutic Repair.

Journal: Biomaterials research

Status: data only, 1 dataset cited

[122] Code ↔ Paper doi:10.3758/s13423-026-03037-9 [paper, repository]

Does the reading brain possess top-down connections from morphemes to letters?

Journal: Psychonomic bulletin & review

Authors' code: OSF 8z43h (no license)

Status: code verified, 7 files readable, 4 matches

[123] doi:10.7554/elife.111703 [paper, data]

<i>foxQ2</i> marks fast-acting interneurons including dopaminergic neurons of <i>mushroom bodies</i> and <i>central complex</i> in the beetle <i>Tribolium castaneum</i>.

Journal: eLife

Status: data only, 1 dataset cited

[124] doi: [paper]

Low-frequency passive mechanical stimulation produces antidepressant-like effects in rats involving gut–brain axis modulation

Journal: Frontiers in immunology

Status: data only

[125] doi: [paper]

Development and internal validation of a clinical prediction model for postoperative venous thromboembolism after neurosurgical intervention in patients with traumatic brain injury

Journal: Frontiers in neurology

Status: code on request

Monday, 26 October 2026 (2 papers)

[126] Code ↔ Paper doi:10.1038/s41392-026-02794-2 [paper, repository]

Spatiotemporally resolved single-nucleus transcriptomics reveals cellular and regional vulnerability in the midbrain in Parkinson's disease.

Journal: Signal transduction and targeted therapy

Authors' code: whistle-ch0i/SNUH_PD_analysis (no license)

Status: code verified, 10 files readable, 5 matches

[127] Code ↔ Paper doi: [paper, repository]

Maternal microbiota shapes brain and neuroendocrine development in piglets

Journal: iMeta

Authors' code: minwenl203-ctrl/Brain-gut-axis-in-germ-free-piglets (MIT)

Status: code verified, 17 files readable, 12 matches

Saturday, 24 October 2026 (5 papers)

[128] doi: [paper, data]

Identification of microglia-associated hub genes and a CX3CR1/P2RY12 two-gene diagnostic model for cross-subtype epilepsy-associated cortical malformations: integrated transcriptomic analysis with external validation

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[129] doi: [paper, data]

DSP1 regulates planarian (Dugesia japonica) neural regeneration depending on CnB

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[130] Code ↔ Paper doi: [paper, repository]

Macroscopic cerebral energy efficiency corresponds to neuron reorganization in awake and anesthetized mice

Journal: Frontiers in neuroscience

Authors' code: soltanianzadeh/STNeuroNet (Apache-2.0)

Status: code verified, 59 files readable

[131] doi: [paper, data]

Q-rung orthopair fuzzy framework for multimodal MRI image fusion and U-Net-based segmentation for brain tumor detection

Journal: Frontiers in artificial intelligence

Status: data only, 1 dataset cited

[132] Code ↔ Paper doi: [paper, repository]

Large language models poorly capture how word order shapes representations of sentence meaning in the human brain

Journal: eLife

Authors' code: Fods12/sentence-meaning-in-the-brain (Apache-2.0)

Status: code verified, 24 files readable, 14 matches

Friday, 23 October 2026 (6 papers)

[133] Code ↔ Paper doi:10.1126/sciadv.adx5564 [paper, repository]

Biophysically constrained learning from healthy neural priors improves motor decoding in pathological cortical networks.

Journal: Science advances

Authors' code: Zenodo 20363750 (CC-BY-4.0)

Status: code verified, 2 files readable

[134] Code ↔ Paper doi:10.1126/sciadv.aeg5791 [paper, repository]

Retroviral insertions contributed to the divergence of human and chimpanzee brains.

Journal: Science advances

Authors' code: PatricJernLab/RetroTector (MIT), Molecular-Neurogenetics/LINC00662_PTERV_Gerdes2025 (no license), Zenodo 21493999 (CC-BY-4.0)

Status: code verified, 76 files readable, 23 matches

[135] doi:10.1371/journal.pone.0361026 [paper, data]

Decoding motor imagery EEG signals by a deep learning network integrating multiscale filtering and temporal-channel attention mechanisms.

Journal: PloS one

Status: data only, 2 datasets cited

[136] doi:10.7554/elife.103530 [paper, data]

Mapping the topographic organization of the human zona incerta using diffusion MRI.

Journal: eLife

Status: data only, 2 datasets cited

[137] doi:10.7554/elife.108036 [paper, data]

Morphology and ultrastructure of pharyngeal sense organs of <i>Drosophila</i> larvae.

Journal: eLife

Status: data only, 1 dataset cited

[138] Code ↔ Paper doi:10.7554/elife.108442 [paper, repository]

Large language models poorly capture how word order shapes representations of sentence meaning in the human brain.

Journal: eLife

Authors' code: Fods12/sentence-meaning-in-the-brain (Apache-2.0)

Status: code verified, 24 files readable, 14 matches

Thursday, 22 October 2026 (4 papers)

[139] doi:10.1007/s00401-026-03103-5 [paper]

TSPO-PET binding in vivo reflects increased phagocytic microglia at post mortem in people with frontotemporal dementia.

Journal: Acta neuropathologica

Status: code on request

[140] Code ↔ Paper doi:10.1007/s00429-026-03213-6 [paper, repository]

Quantifying dexterity and grip strength associations between age, cognitive function (MoCA), and cerebellar gray matter volume in healthy adults across the adult lifespan.

Journal: Brain structure & function

Authors' code: Zenodo 21246441 (CC-BY-NC-4.0), rnorlund/brainWhiz (CC-BY-NC-4.0)

Status: code verified, 77 files readable, 6 matches

[141] Code ↔ Paper doi:10.1371/journal.pbio.3003820 [paper, repository]

A cortical semantic map integrates fractions and integers in the human brain.

Journal: PLoS biology

Authors' code: OSF jqcna (no license), OSF 267s5 (no license)

Status: code verified, 26 files readable, 9 matches

[142] doi:10.7554/elife.105829 [paper, data]

Motor unit mechanisms of speed control in mouse locomotion.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 21 October 2026 (13 papers)

[143] Code ↔ Paper doi:10.1002/gps3.70062 [paper, repository]

Astrocyte-enriched and cilia-related genetic signatures in dementia: A whole-exome sequencing study.

Journal: General psychiatry

Authors' code: bcbio/bcbio-nextgen (MIT)

Status: code verified, 318 files readable, 4 matches

[144] Code ↔ Paper doi:10.1038/s41467-026-79114-3 [paper, repository]

Author Correction: Solving the Hubbard model with neural quantum states.

Journal: Nature communications

Authors' code: codeocean:8740417 (no license), bytedance/laqx (MIT)

Status: code verified, 53 files readable

[145] Code ↔ Paper doi:10.1126/sciadv.aee1955 [paper, repository]

Predicting upcoming visual features during eye movements yields scene representations aligned with human visual cortex.

Journal: Science advances

Authors' code: KietzmannLab/GPN (MIT)

Status: code verified, 15 files readable, 18 matches

[146] doi:10.1126/sciadv.aef7786 [paper, data]

p75&lt;sup&gt;NTR&lt;/sup&gt; orchestrates chondrogenesis and mechanoadaptation to preserve temporomandibular joint development and homeostasis.

Journal: Science advances

Status: data only, 2 datasets cited

[147] Code ↔ Paper doi:10.1126/sciadv.aeh3885 [paper, repository]

Voice patches in the marmoset auditory cortex revealed by multimodal optical imaging.

Journal: Science advances

Authors' code: x-song-x/XINTRINSIC (no license), OSF 6hb2w (no license)

Status: code verified, 11 files readable

[148] Code ↔ Paper doi:10.1126/sciadv.aeh5819 [paper, repository]

Neurophysiological dynamics related to perception, action, and language in schizophrenia.

Journal: Science advances

Authors' code: srikash/presurfer (no license), Zenodo 21401588 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[149] Code ↔ Paper doi:10.1126/sciadv.aei5171 [paper, repository]

Differential sex-dependent responses of circulating steroid hormones and cortical gene expression in a traumatic brain injury model.

Journal: Science advances

Authors' code: Zenodo 21726001 (Apache-2.0), plaisier-lab/sex_specific_tbi (Apache-2.0)

Status: code verified, 30 files readable, 8 matches

[150] doi:10.1126/sciadv.aej4603 [paper, data]

BCG vaccination mitigates tau pathology and restores cognitive function in PS19 mice.

Journal: Science advances

Status: data only, 1 dataset cited

[151] Code ↔ Paper doi:10.1523/jneurosci.0398-26.2026 [paper, repository]

Molecular Disambiguation of Heart Rate Control by the Nucleus Ambiguus.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Zenodo 22864368 (CC-BY-4.0)

Status: code verified, 5 files readable, 5 matches

[152] Code ↔ Paper doi:10.1523/jneurosci.2058-25.2026 [paper, repository]

The Influence of Contralesional Brain Age Gradients on Chronic Stroke Aphasia Severity and Treatment Response.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: NickRiccardi/brain_age_factors (GPL-3.0)

Status: code verified, 3 files readable

[153] Code ↔ Paper doi:10.7554/elife.109678 [paper, repository]

Strong mnemonic prediction errors increase cognitive control, attention, and arousal.

Journal: eLife

Authors' code: alicexue/mpe-attention-cog-ctrl (GPL-3.0)

Status: code verified, 22 files readable, 3 matches

[154] Code ↔ Paper doi:10.7554/elife.109757 [paper, repository]

A mechanistic theory of planning in prefrontal cortex.

Journal: eLife

Authors' code: KrisJensen/pysta (MIT)

Status: code verified, 50 files readable, 12 matches

[155] doi:10.7554/elife.111177 [paper, data]

Complementary stable and dynamic prelimbic ensembles encode learned threat value underlying generalization and discrimination.

Journal: eLife

Status: data only, 2 datasets cited

Tuesday, 20 October 2026 (3 papers)

[156] Code ↔ Paper doi:10.1371/journal.pmed.1004945 [paper, repository]

The CBI-M framework for characterization of traumatic brain injury: Evaluation of performance using data from the CENTER-TBI and TRACK-TBI prospective cohort studies.

Journal: PLoS medicine

Authors' code: Zenodo 22725200 (no license), TRACK-TBI-Public/CBIM_analysis (no license)

Status: to scan

[157] Code ↔ Paper doi:10.7554/elife.106510 [paper, repository]

Multiplexed CRISPRi reveals a transcriptional switch between KLF activators and repressors in the maturing neocortex.

Journal: eLife

Authors' code: rkirk822/Kirk2026_elife (no license)

Status: to scan

[158] Code ↔ Paper doi:10.7554/elife.111730 [paper, repository]

An integrated human forebrain organoid reveals microglia-mediated CD8&lt;sup&gt;+&lt;/sup&gt; T cell recruitment and neuroimmune dysfunction in Alzheimer's disease pathology.

Journal: eLife

Authors' code: FengYilinElaine/2-3D-AD-oranoids (no license)

Status: to scan

Monday, 19 October 2026 (4 papers)

[159] Code ↔ Paper doi:10.3758/s13428-026-03172-0 [paper, repository]

Combined eye tracking and electroencephalography during referential selection in dyadic interaction.

Journal: Behavior research methods

Authors' code: OSF 5ds4z (no license), XlinCLab/DGAME (no license)

Status: to scan

[160] Code ↔ Paper doi: [paper, repository]

Battery Electrode Design Process Using Deep Neural Network

Journal: ACS omega

Authors' code: joosoon/battery (no license)

Status: to scan

[161] Code ↔ Paper doi: [paper, repository]

ChemODE: A Physics-Informed Neural Surrogate for Robust Pharmacokinetics and Biochemical Dynamics

Journal: ACS omega

Authors' code: Wit-K/ChemODE (no license)

Status: to scan

[162] Code ↔ Paper doi: [paper, repository]

Individual dopaminergic neurons induce unique, yet overlapping combinations of behavioural modulations, including safety learning, memory retrieval, and acute locomotion

Journal: eLife

Authors' code: mthane/IMBA (no license)

Status: to scan, 116 files readable

Sunday, 18 October 2026 (1 paper)

[163] Code ↔ Paper doi:10.1080/2162402x.2026.2745295 [paper, repository]

Glioblastoma immune landscape remodeling following treatment with CD70-targeted CAR-T cells.

Journal: Oncoimmunology

Authors' code: DKFZ-ODCF/RNAseqWorkflow (no license)

Status: code verified, 9 files readable, 1 match

Friday, 16 October 2026 (13 papers)

[164] Code ↔ Paper doi:10.1088/1741-2552/ae9bee [paper, repository]

Prioritized nonlinear modeling of shared dynamics across neural populations.

Journal: Journal of neural engineering

Authors' code: ShanechiLab/CroP (no license)

Status: code verified, 90 files readable, 7 matches

[165] Code ↔ Paper doi: [paper, repository]

Visual cues in MI-BCI induce biases in EEG classification models with deep learning but not with standard machine learning

Journal: Frontiers in neuroergonomics

Authors' code: dtrocellier/MI_bci_epoch_window_influence (no license)

Status: to scan

[166] Code ↔ Paper doi: [paper, repository]

Robust and replicable effects of ageing on resting-state brain electrophysiology measured with MEG

Journal: eLife

Authors' code: Zenodo 10401792 (CC-BY-4.0), Zenodo 6875059 (BSD-3-Clause)

Status: to scan, 116 files readable

[167] Code ↔ Paper doi: [paper, repository]

Synaptic connectome of a neurosecretory network in the Drosophila brain

Journal: eLife

Authors' code: Zandawala-lab/McKim-et-al-2026-Synaptic-connectome-of-a-neurosecretory-network-in-the-Drosophila-brain (no license), Zenodo 20795210 (no license)

Status: to scan

[168] Code ↔ Paper doi: [paper, repository]

Dual-pathway processing of AI-generated Chinese ink painting: evidence from eye-tracking, EEG, and artistic expertise

Journal: Frontiers in psychology

Authors' code: 15100376058/ink-painting-ai-expressive-expansion (no license), Zenodo 20540420 (no license)

Status: to scan

[169] Code ↔ Paper doi: [paper, repository]

Patient classification using single-cell RNA-sequencing data with deep learning convolutional neural networks

Journal: Frontiers in bioinformatics

Authors' code: aoulas/DeepCellify (no license)

Status: to scan

[170] Code ↔ Paper doi: [paper, repository]

Predicting IGD treatment outcomes across interventions using a whole-brain functional connectome biomarker

Journal: Dialogues in clinical neuroscience

Authors' code: nitrc.org/projects/bioimagesuite (no license)

Status: to scan

[171] Code ↔ Paper doi: [paper, repository]

A framework for analyzing global Caenorhabditis elegans neural activity

Journal: eLife

Authors' code: shreklab/Rusu_et_al_2026 (no license)

Status: to scan

[172] Code ↔ Paper doi: [paper, repository]

Early spinogenesis in postnatally-born hippocampal granule cells

Journal: Frontiers in neuroanatomy

Authors' code: Zenodo 21992440 (no license), Zenodo 21992439 (no license)

Status: to scan

[173] Code ↔ Paper doi: [paper, repository]

Predicting Adsorbate-Solvent Interaction Energies in Zeolite Pores Using Convolutional Neural Networks with Attention Mechanisms

Journal: Journal of chemical information and modeling

Authors' code: getman-research-group/3dcnn-zeolite-solvation (no license)

Status: to scan

[174] Code ↔ Paper doi: [paper, repository]

Learning to infer transitively on a mental line in premotor cortex

Journal: Science advances

Authors' code: Zenodo 20373909 (no license), Zenodo 13256593 (no license)

Status: to scan

[175] Code ↔ Paper doi: [paper, repository]

Photomapping electrically coupled networks of the mature thalamus and cortex

Journal: Science advances

Authors' code: doi:10.5061/dryad.k3j9kd5qv (no license)

Status: to scan

[176] Code ↔ Paper doi: [paper, repository]

Extended field-of-view two-photon imaging in the deep brain of freely behaving mice using lightweight microfabricated corrective optics

Journal: Science advances

Authors' code: Zenodo 21822152 (no license)

Status: to scan

Saturday, 10 October 2026 (2 papers)

[177] Code ↔ Paper doi: [paper, repository]

APOE4 differentially alters lipid composition in extracellular vesicles from hiPSC-derived neurons of Alzheimer’s disease patients

Journal: Frontiers in pharmacology

Authors' code: MariaChristinaPapatheodorou/APOE4-alters-lipid-composition-in-extracellular-vesicles-from-hiPSC-derived-AD-neurons (no license)

Status: to scan

[178] Code ↔ Paper doi: [paper, repository]

Starvation transforms signal encoding in C. elegans thermoresponsive neurons and suppresses heat avoidance via bidirectional glutamatergic and peptidergic signaling

Journal: eLife

Authors' code: ASL-academic/INFERNO-ThermINATOR (no license)

Status: to scan

Friday, 9 October 2026 (10 papers)

[179] Code ↔ Paper doi: [paper, repository]

Sensory receptor expansion and neural accommodation in butterfly color vision

Journal: Science advances

Authors' code: Zenodo 21811741 (CC-BY-4.0), kekebird888/scrnaseq-butterfly (no license)

Status: code verified, 2 files readable

[180] Code ↔ Paper doi: [paper, repository]

MIMAS: An open-source microlens-array miniature microscope for accessible large-field cortical imaging in freely behaving mice

Journal: Science advances

Authors' code: ChangliangGuo2/MIMAS (GPL-3.0), Zenodo 21783040 (MIT)

Status: code verified, 1 file readable

[181] Code ↔ Paper doi: [paper, repository]

Dopamine release-associated striatal blood oxygenation and whole-brain dynamics during associative learning

Journal: Science advances

Authors' code: doi:10.5061/dryad.4mw6m90rq (no license)

Status: code verified

[182] Code ↔ Paper doi: [paper, repository]

Rod photoreceptors have a dual dependency on both aerobic glycolysis and OXPHOS and diverge metabolically from other retinal neurons

Journal: Science advances

Authors' code: doi:10.5061/dryad.gxd25482w (no license), Zenodo 22768263 (CC-BY-4.0)

Status: code verified, 58 files readable

[183] doi: [paper, data]

Time-dependent transcriptomic response to scrapie exposure in ovine MSC-derived neuron-like cells

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[184] doi: [paper, data]

Alzheimer's detection using quanvolutional neural networks with federated training

Journal: Frontiers in neuroscience

Status: data only, 3 datasets cited

[185] doi: [paper, data]

TrkC-dependent regulation of dendritic branching shapes dendritic bundle architecture in the rat granular retrosplenial cortex

Journal: Frontiers in neural circuits

Status: data only, 1 dataset cited

[186] Code ↔ Paper doi: [paper, repository]

Human iPSC-derived 2D cortical neurons and 3D cortical organoids show fetal brain proteomic similarity and distinct phosphoproteomic profiles

Journal: Frontiers in bioengineering and biotechnology

Authors' code: yongsoopark01/ipsc-neuron-organoid-proteomics (MIT), Zenodo 20176358 (MIT)

Status: code verified, 94 files readable, 24 matches

[187] doi: [paper, data]

Interactions between Tick-Borne Encephalitis Virus Nonstructural Protein 1 and Blood–Brain Barrier Tight Junction Proteins: Potential Clues to Strain-Specific Neuropathogenicity

Journal: ACS omega

Status: data only, 3 datasets cited

[188] Code ↔ Paper doi: [paper, repository]

Insights into temporal and spatial dynamics of short association fiber formation in the human fetal brain

Journal: Science advances

Authors' code: blibli/fetalSAF (no license)

Status: to scan

Thursday, 8 October 2026 (5 papers)

[189] Code ↔ Paper doi: [paper, repository]

How brain pulsations drive solute transport in the cranial subarachnoid space: insights from a toy model

Journal: Journal of the Royal Society, Interface

Authors' code: doi:10.6084/m9.figshare.c.8636084 (no license)

Status: code found, still to be checked

[190] Code ↔ Paper doi: [paper, repository]

Dynamic effects of microglial NLRP3 on transcriptional alterations post-traumatic brain injury

Journal: Frontiers in neuroscience

Authors' code: jstjohn/SeqPrep (MIT), najoshi/sickle (MIT)

Status: code verified, 23 files readable

[191] Code ↔ Paper doi: [paper, repository]

I think, therefore I hit: EEG parameters predict performance in complex cognitive tasks

Journal: Frontiers in neuroergonomics

Authors' code: CogWorks/SpaceFortress (no license)

Status: code verified, 28 files readable, 1 match

[192] Code ↔ Paper doi: [paper, repository]

Structurally restricted message-passing within shallow architectures for explainable network-level brain decoding on small cohorts

Journal: Frontiers in behavioral neuroscience

Authors' code: shap/shap (MIT)

Status: code verified, 56 files readable

[193] Code ↔ Paper doi: [paper, repository]

LGTM: Gaussian process modulated neural topic modeling for longitudinal microbiome

Journal: Gut Microbes

Authors' code: yuanx749/lgtm (MIT), Zenodo 20588704 (MIT)

Status: code verified, 54 files readable, 7 matches

Wednesday, 7 October 2026 (4 papers)

[194] Code ↔ Paper doi: [paper, repository]

How to train your neuron: developing a detailed, up-to-date, multipurpose model of hippocampal CA1 pyramidal cells

Journal: Frontiers in computational neuroscience

Authors' code: lucatar/hippounit (BSD-3-Clause), lucatar/hippounit_CA1_demo (no license), Zenodo 21907403 (CC-BY-4.0), modeldb:2031080 (no license)

Status: code verified, 110 files readable, 10 matches

[195] Code ↔ Paper doi: [paper, repository]

Behavioral techniques for controlling visual stimuli to modulate visual processing in the brain and their implementation in augmented reality technology

Journal: Frontiers in neuroscience

Authors' code: OSF hz7b9 (no license)

Status: code verified, 1 file readable

[196] Code ↔ Paper doi: [paper, repository]

Scanning and active sampling behaviours emerge from conserved insect neural circuits

Journal: eLife

Authors' code: antnavteam/CX_oscillator_scans (no license)

Status: code verified, 4 files readable, 9 matches

[197] Code ↔ Paper doi: [paper, repository]

Ant brain metabolomics reveals contrasting purine and amine dynamics in a reversible trematode-induced host manipulation

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.8697196 (no license)

Status: code found, still to be checked

Tuesday, 6 October 2026 (1 paper)

[198] Code ↔ Paper doi: [paper, repository]

Distractor processing of emotional faces: behavioral and women-only fMRI findings on the perceptual load–dilution debate

Journal: Frontiers in human neuroscience

Authors' code: OSF enmvy (no license)

Status: code found, still to be checked

Saturday, 3 October 2026 (1 paper)

[199] Code ↔ Paper doi:10.1007/s00285-026-02451-w [paper, repository]

State and parameter estimation for a neural model of local field potentials.

Journal: Journal of mathematical biology

Authors' code: Zenodo 21795156 (CC-BY-SA-4.0)

Status: code verified, 1 file readable, 5 matches

Friday, 2 October 2026 (6 papers)

[200] doi:10.1007/s11682-026-01206-x [paper]

Brainstem volume and arterial stiffness interact to support memory in midlife.

Journal: Brain imaging and behavior

Status: code on request

[201] doi:10.1007/s13659-026-00617-z [paper, data]

Methyl eugenol increases neural microcirculation to promote nerve repair by regulating endothelial cell and Schwann cell communication via Ptn/Sdc4.

Journal: Natural products and bioprospecting

Status: data only, 1 dataset cited

[202] Code ↔ Paper doi:10.1038/s41467-026-77957-4 [paper, repository]

Cannabinoid modulation of central amygdala population dynamics during threat investigation.

Journal: Nature communications

Authors' code: figshare 21956801 (CC-BY-4.0), luisrosasvidal/Rosas-Vidal2025 (GPL-3.0), fyasmin09/yasmin_et_al_2026 (no license)

Status: code verified, 25 files readable, 11 matches

[203] Code ↔ Paper doi:10.1126/sciadv.aee1540 [paper, repository]

Highly stretchable, hair-compatible multichannel neural interface with time-stable hydrogel for high-fidelity long-term EEG sensing.

Journal: Science advances

Authors' code: Zenodo 19422275 (CC-BY-4.0)

Status: code verified

[204] Code ↔ Paper doi:10.1126/sciadv.aei0203 [paper, repository]

Synapse-like specializations at dopamine release sites orchestrate efficient and precise neuromodulatory signaling.

Journal: Science advances

Authors' code: janeliascicomp/nnmf (BSD-3-Clause), Imbrosci/synaptic-vesicles-detection (no license), JaneliaSciComp/beyene-lab (BSD-3-Clause)

Status: code verified, 96 files readable, 5 matches

[205] Code ↔ Paper doi:10.7554/elife.105930 [paper, repository]

Mapping human visual contrast sensitivity and vision loss across the visual field with model-based fMRI.

Journal: eLife

Authors' code: HugoCWB/ChowWingBomEtAl_2025_eLife (MIT), hugocwb/adjustecctool (MIT), Zenodo 18770065 (GPL-3.0)

Status: code verified, 10 files readable, 10 matches

Thursday, 1 October 2026 (24 papers, 19 on this page)

[206] doi:10.1002/acm2.70828 [paper]

Automated quality assurance of rigid brain CT/MR image registration using a 3D convolutional neural network.

Journal: Journal of applied clinical medical physics

Status: code on request

[207] Code ↔ Paper doi:10.1002/alz.71878 [paper, repository]

World Trade Center neurotoxicant exposure severity is associated with cortical thinning and regional brain atrophy: a neuroimaging study of general responders at midlife.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: OSF hxye6 (no license)

Status: code verified, 1 file readable

[208] Code ↔ Paper doi:10.1002/alz.71891 [paper, repository]

Excitation-inhibition imbalance links amyloid pathophysiology to cognition in non-demented individuals.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: macc-sg.notion.site/data-catalogue-122e6ba0007d80688d11fa10b6fcbd01 (no license), thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 2 matches

[209] Code ↔ Paper doi:10.1002/bimj.70179 [paper, repository]

Capturing Heterogeneous Time-Variation in Covariate Effects in Non-Proportional Hazard Regression Models.

Journal: Biometrical journal. Biometrische Zeitschrift

Authors' code: Niklas191/heterogeneous_time-variation (no license)

Status: code verified, 4 files readable, 1 match

[210] Code ↔ Paper doi:10.1002/cnr2.70656 [paper, repository]

Deepening the Understanding of Platelet-Derived RNA as Biomarker for Glioblastoma Through GSEA, TDEA, and Elastic Net Regularization Analysis.

Journal: Cancer reports (Hoboken, N.J.)

Authors' code: KrzysztofPastuszak/Platelets-GBM (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[211] Code ↔ Paper doi:10.1002/glia.70204 [paper, repository]

Müller Glia-Vasculature Interactions in the Developing Retina.

Journal: Glia

Authors' code: FellerLabCodeShare/Glia_Vasculature (no license)

Status: code verified, 4 files readable, 1 match

[212] Code ↔ Paper doi:10.1002/glia.70210 [paper, repository]

Predicting Relevant Microglia-Associated Cell-Cell Communication Pathways in Alzheimer's Disease: A Role for SPP1.

Journal: Glia

Authors' code: jmkotah/AD_snRNAseq (no license)

Status: code verified, 10 files readable, 10 matches

[213] Code ↔ Paper doi:10.1002/hbm.70603 [paper, repository]

DTI-ALPS Primarily Reflects White Matter Diffusion Dispersion and Microstructural Heterogeneity in Neurodegeneration: Insights From Multi-Modal MRI.

Journal: Human brain mapping

Authors' code: treanus/KUL_NIS (MPL-2.0)

Status: code verified, 59 files readable, 3 matches

[214] Code ↔ Paper doi:10.1002/hbm.70636 [paper, repository]

Do You Match What I Match? A Systematic Review of Over 20 Years of the Emotional Face Matching Task Reveals Vast Inconsistencies in Design and Implementation.

Journal: Human brain mapping

Authors' code: predictive-clinical-neuroscience/EFMT_Review (GPL-3.0), Hannah-Savage/Standard_EFMT (no license), laureate-institute-for-brain-research/HARIRI-Task (no license)

Status: code verified, 32 files readable, 10 matches

[215] Code ↔ Paper doi:10.1002/hbm.70645 [paper, repository]

Spatial Collinearity Constrains Multivariate Molecular-Enriched Network Estimation.

Journal: Human brain mapping

Authors' code: thomasyeolab/cbig (MIT), yetianmed/subcortex (MIT)

Status: code verified, 2,046 files readable, 3 matches

[216] Code ↔ Paper doi:10.1002/hbm.70646 [paper, repository]

Static and Dynamic Resting-State fMRI Connectivity Show Frequency-Resolved Associations With Intracranial EEG Connectivity.

Journal: Human brain mapping

Authors' code: rashnavadi/Static-and-dynamic-resting-state-fMRI-icEEG-FC (no license)

Status: code verified, 59 files readable, 11 matches

[217] doi:10.1002/hbm.70647 [paper]

Orbitofrontal and Medial Frontal Gray Matter Volumes Are Associated With Hyperactivity Traits in 2548 Nonclinical Adults.

Journal: Human brain mapping

Status: code on request

[218] doi:10.1002/hbm.70650 [paper, data]

The Emotional Experience of Time: Effects of Anxiety and Interoceptive Ability on Temporal Perception.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[219] Code ↔ Paper doi:10.1002/hbm.70651 [paper, repository]

Unveiling Functional-Metabolic Synergy in the Healthy Brain: Multivariate Integration of Dynamic [&lt;sup&gt;18&lt;/sup&gt;F]FDG-PET and Resting-State fMRI.

Journal: Human brain mapping

Authors' code: FairUnipd/ConsensusClustering-YanAtlas (no license)

Status: empty repository

[220] doi:10.1002/jdn.70178 [paper, data]

PSEN1 Expression Identifies a Developmentally Distinct Favourable-Prognosis State in SHH α Medulloblastoma.

Journal: International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience

Status: data only, 2 datasets cited

[221] Code ↔ Paper doi:10.1002/nbm.70382 [paper, repository]

The Role of Dendritic Spines in Water Exchange Measurements With Diffusion MRI: Time-Dependent Single Diffusion Encoding MRI.

Journal: NMR in biomedicine

Authors' code: kdrsimsek/dendriticSpines_exchange (no license)

Status: code verified, 27 files readable, 10 matches

[222] Code ↔ Paper doi:10.1098/rstb.2025.0264 [paper, repository]

Traumatic brain injury induces cell-type-specific remodelling of the proteostasis network.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: Ciryam-Lab/Lefkowitz-Proteostasis-2026 (no license), doi:10.6084/m9.figshare.c.8672767 (no license)

Status: code verified, 5 files readable, 10 matches

[223] Code ↔ Paper doi:10.1111/acel.70656 [paper, repository]

Deep Learning Predicts Hematopoietic Stem Cell Aging From 3D Chromatin Images.

Journal: Aging cell

Authors' code: biomedical-data-science/chromagenet (MIT)

Status: code verified, 22 files readable, 21 matches

[224] doi:10.1111/adb.70190 [paper, data]

Regulation of Craving: Neural Correlates and the Role of Stress and Delay Discounting.

Journal: Addiction biology

Status: data only, 1 dataset cited

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