Every paper, by date: page 138

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 138 of 200: 17 January 2024 to 8 January 2024.

Wednesday, 17 January 2024 (42 papers, 30 on this page)

[30689] doi:10.1038/s41467-023-44388-4 [paper, repository]

Upregulated hepatic lipogenesis from dietary sugars in response to low palmitate feeding supplies brain palmitate.

Journal: Nature communications

Authors' code: idepsite.wordpress.com/pathways (no license), idepsite.wordpress.com/network/r (no license), Zenodo 10137505 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[30690] doi:10.1038/s41467-024-44742-0 [paper, repository]

Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types.

Journal: Nature communications

Authors' code: buutrg/Kim_ATAC_code (no license), bulik/ldsc (GPL-3.0)

Status: code verified, 31 files readable, 2 matches

[30691] doi:10.1038/s41467-024-44810-5 [paper, repository]

Human brain representations of internally generated outcomes of approximate calculation revealed by ultra-high-field brain imaging.

Journal: Nature communications

Authors' code: OSF djftw (no license)

Status: code verified, 5 files readable, 3 matches

[30692] doi:10.1038/s41467-024-44820-3 [paper, data]

Structural polymorphism of amyloid fibrils in ATTR amyloidosis revealed by cryo-electron microscopy.

Journal: Nature communications

Status: data only, 5 datasets cited

[30693] doi:10.1038/s41586-023-06913-9 [paper, repository]

Alternative splicing of latrophilin-3 controls synapse formation.

Journal: Nature

Authors' code: purl.stanford.edu/nj297xj2116 (no license)

Status: code verified

[30694] doi:10.1038/s41593-023-01552-9 [paper, repository]

The developmental timing of spinal touch processing alterations predicts behavioral changes in genetic mouse models of autism spectrum disorders.

Journal: Nature neuroscience

Authors' code: RichieHakim/face-rhythm (MIT)

Status: code verified, 32 files readable, 2 matches

[30695] doi:10.1038/s41598-023-50857-z [paper, data]

Modulating the difficulty of a visual oddball-like task and P3m amplitude.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30696] doi:10.1038/s41598-024-51867-1 [paper, data]

NeuroNet19: an explainable deep neural network model for the classification of brain tumors using magnetic resonance imaging data.

Journal: Scientific reports

Status: data only, 2 datasets cited

[30697] doi:10.1098/rsif.2023.0603 [paper, repository]

An <i>in</i> <i>vitro</i> agent-based modelling approach to optimization of culture medium for generating muscle cells.

Journal: Journal of the Royal Society, Interface

Authors' code: dhardma2/MyoChip (GPL-3.0), Zenodo 10300311 (CC-BY-4.0), doi:10.6084/m9.figshare.c.6984361 (no license)

Status: code verified, 37 files readable

[30698] doi:10.1098/rsob.230285 [paper, repository]

Formation of amyloid fibrils by the regulatory 14-3-3&lt;i&gt;ζ&lt;/i&gt; protein.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.6991817 (no license)

Status: code found, still to be checked

[30699] doi:10.1098/rspb.2023.2578 [paper, repository]

Females smell differently: characteristics and significance of the most common olfactory sensilla of female silkmoths.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7005726 (no license)

Status: code found, still to be checked

[30700] doi:10.1117/1.nph.11.3.033402 [paper]

Imaging different cell populations in the mouse olfactory bulb using the genetically encoded voltage indicator ArcLight.

Journal: Neurophotonics

Status: code on request

[30701] doi:10.1126/sciadv.adj4411 [paper, data]

Wired together, change together: Spike timing modifies transmission in converging assemblies.

Journal: Science advances

Status: data only, 1 dataset cited

[30702] doi:10.1126/sciadv.adk7957 [paper, data]

Four-dimensional computational ultrasound imaging of brain hemodynamics.

Journal: Science advances

Status: data only, 1 dataset cited

[30703] doi:10.1152/jn.00513.2022 [paper, data]

Motor patterns of patients with spinal muscular atrophy suggestive of sensory and corticospinal contributions to the development of locomotor muscle synergies.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[30704] doi:10.1162/imag_a_00064 [paper, data]

Classification accuracy of structural and functional connectomes across different depressive phenotypes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[30705] doi:10.1186/s12964-023-01379-8 [paper, data]

Neutrophil extracellular traps mediated by platelet microvesicles promote thrombosis and brain injury in acute ischemic stroke.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[30706] doi:10.1371/journal.pcbi.1011164 [paper, repository]

Virtual neural network-guided optimization of non-invasive brain stimulation in Alzheimer's disease.

Journal: PLoS computational biology

Authors' code: CornelisStam/BrainWave (no license)

Status: empty repository, 1 file readable

[30707] doi:10.1371/journal.pcbi.1011793 [paper, repository]

Somnotate: A probabilistic sleep stage classifier for studying vigilance state transitions.

Journal: PLoS computational biology

Authors' code: paulbrodersen/somnotate (GPL-3.0), Zenodo 8055723 (other-open)

Status: code verified, 40 files readable, 14 matches

[30708] doi:10.1371/journal.pone.0286742 [paper, data]

Rhesus monkeys learn to control a directional-key inspired brain machine interface via bio-feedback.

Journal: PloS one

Status: data only, 1 dataset cited

[30709] doi:10.1371/journal.pone.0293011 [paper, data]

Pathobiology of Candida auris infection analyzed by multiplexed imaging and single cell analysis.

Journal: PloS one

Status: data only, 1 dataset cited

[30710] doi:10.1523/eneuro.0211-23.2023 [paper, repository]

Open-Source Instrumented Object to Study Dexterous Object Manipulation.

Journal: eNeuro

Authors' code: biomedicalsignalssensorsucd/inob (no license)

Status: code verified, 7 files readable

[30711] doi:10.18632/aging.205444 [paper, repository]

Joint analysis of proteome, transcriptome, and multi-trait analysis to identify novel Parkinson's disease risk genes.

Journal: Aging

Authors' code: JonJala/mtag (GPL-3.0), hakyimlab/MetaXcan (MIT), bogdanlab/focus (GPL-3.0), Anonymousxyee/Joint-Analysis-of-PWAS--TWAS--and-Multi-Trait-Analysis-to-Identify-Novel-PD-Risk-Gene (no license)

Status: code verified, 166 files readable, 1 match

[30712] doi:10.2147/ndt.s440065 [paper]

Knockdown of LCN2 Attenuates Brain Injury After Intracerebral Hemorrhage via Suppressing Pyroptosis.

Journal: Neuropsychiatric disease and treatment

Status: data only

[30713] doi:10.3389/fnins.2024.1320645 [paper, repository]

ERTNet: an interpretable transformer-based framework for EEG emotion recognition.

Journal: Frontiers in neuroscience

Authors' code: ruix6/ERTNet (no license)

Status: code verified, 12 files readable, 4 matches

[30714] doi:10.3389/fnins.2024.1330512 [paper, repository]

Emergence of number sense through the integration of multimodal information: developmental learning insights from neural network models.

Journal: Frontiers in neuroscience

Authors' code: ncnp-cpsy/NumberSenseAndMultimodalLearning (GPL-3.0)

Status: code verified, 40 files readable

[30715] doi:10.3390/brainsci14010087 [paper, data]

Balancing Act: Acute and Contextual Vestibular Sensations of Cranial Electrotherapy Stimulation Using Survey and Sensor Outcomes in a Non-Clinical Sample.

Journal: Brain sciences

Status: data only, 1 dataset cited

[30716] doi:10.3390/ijms25021125 [paper, data]

Autophagy Markers Are Altered in Alzheimer's Disease, Dementia with Lewy Bodies and Frontotemporal Dementia.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[30717] doi:10.5334/joc.344 [paper, repository]

What is a Rhythm for the Brain? The Impact of Contextual Temporal Variability on Auditory Perception.

Journal: Journal of cognition

Authors' code: researchbox.org/1539&peer_review_passcode=twkwiz (no license)

Status: code verified

[30718] doi:10.7554/elife.87729 [paper, repository]

A generative model of electrophysiological brain responses to stimulation.

Journal: eLife

Authors' code: vidaurre/genephys (GPL-3.0)

Status: code verified, 10 files readable, 4 matches

Tuesday, 16 January 2024 (30 papers)

[30719] doi:10.1002/advs.202306321 [paper, repository]

An Electroencephalography Profile of Paroxysmal Kinesigenic Dyskinesia.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: YaleMRRC/CPM (no license)

Status: code verified, 41 files readable

[30720] doi:10.1016/j.isci.2024.108799 [paper, repository]

Synaptic cell-adhesion molecule latrophilin-2 is differentially directed to dendritic domains of hippocampal neurons.

Journal: iScience

Authors' code: Zenodo 8368611 (CC-BY-4.0), Zenodo 8368622 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[30721] doi:10.1016/j.isci.2024.108924 [paper]

An intra-oral flavor detection task in freely moving mice.

Journal: iScience

Status: code on request

[30722] doi:10.1016/j.neurot.2024.e00318 [paper, data]

Calcitriol ameliorates motor deficits and prolongs survival of Chrne-deficient mouse, a model for congenital myasthenic syndrome, by inducing Rspo2.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[30723] doi:10.1016/j.patter.2023.100915 [paper, repository]

Spaco: A comprehensive tool for coloring spatial data at single-cell resolution.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 10113347 (CC-BY-4.0), BrainStOrmics/Spaco (GPL-3.0), Zenodo 10113359 (CC-BY-4.0), BrainStOrmics/Spaco_scripts (no license), BrainStOrmics/SpacoR (GPL-3.0), vinay-swamy/scPOP (GPL-3.0), rpy2/rpy2 (GPL-2.0), Zenodo 10121765 (CC-BY-4.0), Zenodo 10113360 (CC-BY-4.0)

Status: code verified, 210 files readable, 5 matches

[30724] doi:10.1038/s41380-023-02390-8 [paper, repository]

Age of onset of obsessive-compulsive disorder differentially affects white matter microstructure.

Journal: Molecular psychiatry

Authors' code: OSF m97kp (no license), chrisvriend/dwi-prep4tract (no license), chrisvriend/dwi-dtitk (GPL-3.0), chrisvriend/dwi-fba (no license)

Status: code verified, 41 files readable, 3 matches

[30725] doi:10.1038/s41398-024-02731-3 [paper]

Amelioration of obsessive-compulsive disorder by intracellular acidification of cortical neurons with a proton pump inhibitor.

Journal: Translational psychiatry

Status: code on request

[30726] doi:10.1038/s41522-024-00477-w [paper]

The gut microbiota modulate locomotion via vagus-dependent glucagon-like peptide-1 signaling.

Journal: NPJ biofilms and microbiomes

Status: data only

[30727] doi:10.1038/s41591-023-02764-z [paper, repository]

Connectivity-guided intermittent theta burst versus repetitive transcranial magnetic stimulation for treatment-resistant depression: a randomized controlled trial.

Journal: Nature medicine

Authors' code: SPMIC-UoN/brightmind_pipeline (no license), figshare 1 (no license)

Status: code verified, 47 files readable, 1 match

[30728] doi:10.1038/s41598-024-51333-y [paper, repository]

Investigating robust associations between functional connectivity based on graph theory and general intelligence.

Journal: Scientific reports

Authors' code: stdimitr/topological_filtering_networks (GPL-3.0)

Status: code verified, 38 files readable, 4 matches

[30729] doi:10.1038/s41598-024-51472-2 [paper, data]

An intelligent LinkNet-34 model with EfficientNetB7 encoder for semantic segmentation of brain tumor.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30730] doi:10.1038/s41598-024-51600-y [paper, data]

Parkinson's disease detection based on features refinement through L1 regularized SVM and deep neural network.

Journal: Scientific reports

Status: data only, 3 datasets cited

[30731] doi:10.1042/bsr20231846 [paper, repository]

Metabolic and behavioral alterations associated with viral vector-mediated toxicity in the paraventricular hypothalamic nucleus.

Journal: Bioscience reports

Authors' code: RohanSavani/OpenFieldAnalysis (no license)

Status: code verified, 3 files readable

[30732] doi:10.1073/pnas.2317773121 [paper, repository]

Population encoding of stimulus features along the visual hierarchy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: dyballa/NeuralEncodingManifolds (BSD-2-Clause)

Status: code verified, 28 files readable, 3 matches

[30733] doi:10.1093/braincomms/fcae010 [paper, repository]

Dysfunctions of multiscale dynamic brain functional networks in subjective cognitive decline.

Journal: Brain communications

Authors' code: MianxinLiu/Dysfunctions-of-Multiscale-Dynamic-Brain-Functional-Networks-in-Subjective-Cognitive-Decline (no license)

Status: code verified, 9 files readable, 2 matches

[30734] doi:10.1101/2024.01.15.575737 [paper, repository]

Loss of primary cilia and dopaminergic neuroprotection in pathogenic LRRK2-driven and idiopathic Parkinson’s disease

Journal: bioRxiv (preprint)

Authors' code: Zenodo 10470951 (MIT), Zenodo 10470950 (MIT)

Status: code verified, 6 files readable

[30735] doi:10.1172/jci.insight.173707 [paper, data]

Catalytic isoforms of AMP-activated protein kinase differentially regulate IMPDH activity and photoreceptor neuron function.

Journal: JCI insight

Status: data only, 1 dataset cited

[30736] doi:10.1172/jci165523 [paper]

Galectin-3 aggravates microglial activation and tau transmission in tauopathy.

Journal: The Journal of clinical investigation

Status: data only

[30737] doi:10.1186/s13059-023-03162-x [paper, repository]

Improved modeling of RNA-binding protein motifs in an interpretable neural model of RNA splicing.

Journal: Genome biology

Authors' code: kavigupta/sam (GPL-3.0), Zenodo 10393043 (CC-BY-4.0)

Status: code verified, 1,130 files readable, 4 matches

[30738] doi:10.1186/s40478-024-01728-9 [paper, data]

Unclassifiable CNS tumors in DNA methylation-based classification: clinical challenges and prognostic impact.

Journal: Acta neuropathologica communications

Status: data only, 5 datasets cited

[30739] doi:10.1364/boe.510512 [paper]

Impact of a tilted coverslip on two-photon and STED microscopy.

Journal: Biomedical optics express

Status: code on request

[30740] doi:10.1371/journal.pcbi.1011802 [paper, repository]

Transcription factor interactions explain the context-dependent activity of CRX binding sites.

Journal: PLoS computational biology

Authors' code: mawsterlab/synthetic_promoter_mavenn (GPL-3.0)

Status: code verified, 6 files readable, 3 matches

[30741] doi:10.1371/journal.pone.0286848 [paper, data]

RETRACTED: Application of in-silico drug discovery techniques to discover a novel hit for target-specific inhibition of SARS-CoV-2 Mpro's revealed allosteric binding with MAO-B receptor: A theoretical study to find a cure for post-covid neurological disorder.

Journal: PloS one

Status: data only, 1 dataset cited

[30742] doi:10.1371/journal.pone.0294187 [paper, data]

TET3 is a positive regulator of mitochondrial respiration in Neuro2A cells.

Journal: PloS one

Status: data only, 1 dataset cited

[30743] doi:10.1371/journal.pone.0296790 [paper, data]

Longitudinal MRI and 1H-MRS study of SCA7 mouse forebrain reveals progressive multiregional atrophy and early brain metabolite changes indicating early neuronal and glial dysfunction.

Journal: PloS one

Status: data only, 1 dataset cited

[30744] doi:10.1523/eneuro.0102-23.2023 [paper, repository]

Tug-of-Peace: Visual Rivalry and Atypical Visual Motion Processing in MECP2 Duplication Syndrome of Autism.

Journal: eNeuro

Authors' code: mecp2-project/Dolia (no license)

Status: code verified, 19 files readable

[30745] doi:10.2463/mrms.mp.2023-0093 [paper, data]

Voxel-based Morphometry of Alzheimer's Disease Using a Localizer Image: A Comparative Study with Magnetization Prepared Rapid Acquisition with Gradient Echo.

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Status: data only, 1 dataset cited

[30746] doi:10.3389/fcell.2023.1223987 [paper, data]

The role of microRNA-325-3p as a critical player in cell death in NSCs and astrocytes.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[30747] doi:10.3389/fphar.2023.1259051 [paper, data]

A glycosylation-related gene signature predicts prognosis, immune microenvironment infiltration, and drug sensitivity in glioma.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[30748] doi:10.7554/elife.77761 [paper, data]

Interaction of human keratinocytes and nerve fiber terminals at the neuro-cutaneous unit.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 15 January 2024 (16 papers)

[30749] doi:10.1016/j.crmeth.2023.100689 [paper, repository]

Patterning ganglionic eminences in developing human brain organoids using a morphogen-gradient-inducing device.

Journal: Cell reports methods

Authors' code: Npavo002/MATLAB_SobelGradientAnalysis (MIT), Zenodo 10372539 (CC-BY-4.0)

Status: code verified, 4 files readable

[30750] doi:10.1016/j.isci.2024.108915 [paper, repository]

Enhanced attention-related alertness following right anterior insular cortex neurofeedback training.

Journal: iScience

Authors' code: Zenodo 8475 (MIT), popovov7/rtfMRI_rAIC (no license), svenkreiss/decouple (MIT)

Status: code verified, 85 files readable, 12 matches

[30751] doi:10.1016/j.isci.2024.108919 [paper]

Inhibition of cannabinoid degradation enhances hippocampal contextual fear memory and exhibits anxiolytic effects.

Journal: iScience

Status: code on request

[30752] doi:10.1038/s41467-023-44024-1 [paper, repository]

Flexible switch matrix addressable electrode arrays with organic electrochemical transistor and pn diode technology.

Journal: Nature communications

Authors' code: klshepard/Electrophysiology-analysis-tools (no license)

Status: code verified, 3 files readable

[30753] doi:10.1038/s41467-024-44809-y [paper]

The neural origin for asymmetric coding of surface color in the primate visual cortex.

Journal: Nature communications

Status: code on request

[30754] doi:10.1038/s41565-023-01587-w [paper, data]

Liquid-metal-based three-dimensional microelectrode arrays integrated with implantable ultrathin retinal prosthesis for vision restoration.

Journal: Nature nanotechnology

Status: code on request, 1 dataset cited

[30755] doi:10.1038/s41598-023-43328-y [paper, data]

A ResNet-LSTM hybrid model for predicting epileptic seizures using a pretrained model with supervised contrastive learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30756] doi:10.1038/s42003-023-05742-w [paper, data]

Muscle anatomy is reflected in the spatial organization of the spinal motoneuron pools.

Journal: Communications biology

Status: data only, 1 dataset cited

[30757] doi:10.1038/s44319-023-00017-1 [paper, data]

Ribogenesis boosts controlled by HEATR1-MYC interplay promote transition into brain tumour growth.

Journal: EMBO reports

Status: data only, 1 dataset cited

[30758] doi:10.1111/acel.14037 [paper, data]

Senolytic treatment alleviates doxorubicin-induced chemobrain.

Journal: Aging cell

Status: data only, 1 dataset cited

[30759] doi:10.1111/gbb.12876 [paper, repository]

Principal and independent genomic components of brain structure and function.

Journal: Genes, brain, and behavior

Authors' code: LennartOblong/GenomicICA (no license)

Status: code verified, 12 files readable, 2 matches

[30760] doi:10.1186/s12964-023-01461-1 [paper, data]

Alcohol and e-cigarette damage alveolar-epithelial barrier by activation of P2X7r and provoke brain endothelial injury via extracellular vesicles.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[30761] doi:10.1186/s13059-023-03147-w [paper, data]

ARMC5 controls the degradation of most Pol II subunits, and ARMC5 mutation increases neural tube defect risks in mice and humans.

Journal: Genome biology

Status: data only, 1 dataset cited

[30762] doi:10.3390/antiox13010103 [paper, repository]

Dietary Marine Oils Selectively Decrease Obesogenic Diet-Derived Carbonylation in Proteins Involved in ATP Homeostasis and Glutamate Metabolism in the Rat Cerebellum.

Journal: Antioxidants (Basel, Switzerland)

Authors' code: stringdb.org (no license)

Status: code found, still to be checked

[30763] doi:10.3390/s24020540 [paper, repository]

A Fusion Algorithm Based on a Constant Velocity Model for Improving the Measurement of Saccade Parameters with Electrooculography.

Journal: Sensors (Basel, Switzerland)

Authors' code: HiroshanOU/EOG_CVM (no license)

Status: code verified, 28 files readable, 3 matches

[30764] doi:10.7554/elife.86085 [paper, repository]

Resting-state alterations in behavioral variant frontotemporal dementia are related to the distribution of monoamine and GABA neurotransmitter systems.

Journal: eLife

Authors' code: juryxy/JuSpace (no license), FAIR-CNS/MENGA (no license), liha-coding/Neurotransmitter-vulnerability-in-bvFTD (no license)

Status: code verified, 27 files readable, 7 matches

Sunday, 14 January 2024 (4 papers)

[30765] doi:10.1038/s41598-024-51474-0 [paper, repository]

Identification of clinically relevant patient endotypes in traumatic brain injury using latent class analysis.

Journal: Scientific reports

Authors' code: SteveHQiu/TBIClustering (no license)

Status: code verified, 9 files readable, 14 matches

[30766] doi:10.1038/s41598-024-51992-x [paper, repository]

IDSL.GOA: gene ontology analysis for interpreting metabolomic datasets.

Journal: Scientific reports

Authors' code: plotly/react-cytoscapejs (MIT)

Status: code verified, 12 files readable

[30767] doi:10.1186/s40708-023-00214-7 [paper]

Synergistic integration of Multi-View Brain Networks and advanced machine learning techniques for auditory disorders diagnostics.

Journal: Brain informatics

Status: code on request

[30768] doi:10.3390/metabo14010053 [paper, data]

Metabolomic Signatures of Brainstem in Mice following Acute and Subchronic Hydrogen Sulfide Exposure.

Journal: Metabolites

Status: data only, 1 dataset cited

Saturday, 13 January 2024 (2 papers)

[30769] doi:10.1007/s00018-023-05072-4 [paper, repository]

Mechano-regulation by clathrin pit-formation and passive cholesterol-dependent tubules during de-adhesion.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: BidishaSinha/Mechano-regulation-by-pit-formation-during-De-adhesion (no license)

Status: code verified, 29 files readable, 4 matches

[30770] doi:10.1007/s12035-023-03869-9 [paper, data]

A Single-Cell Transcriptomic Analysis of the Mouse Hippocampus After Voluntary Exercise.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

Friday, 12 January 2024 (24 papers)

[30771] doi:10.1007/s10508-023-02778-1 [paper]

Gender Dysphoria and Sexual Euphoria: A Bayesian Perspective on the Influence of Gender-Affirming Hormone Therapy on Sexual Arousal.

Journal: Archives of sexual behavior

Status: code on request

[30772] doi:10.1016/j.celrep.2023.113660 [paper, data]

A comparative evaluation of the strengths and potential caveats of the microglial inducible CreER mouse models.

Journal: Cell reports

Status: code on request, 1 dataset cited

[30773] doi:10.1016/j.crmeth.2023.100686 [paper]

Modulation of neuronal activity in cortical organoids with bioelectronic delivery of ions and neurotransmitters.

Journal: Cell reports methods

Status: code on request

[30774] doi:10.1016/j.cub.2023.12.039 [paper, data]

High-level aftereffects reveal the role of statistical features in visual shape encoding.

Journal: Current biology : CB

Status: data only, 1 dataset cited

[30775] doi:10.1016/j.isci.2024.108881 [paper, repository]

Strategies to combine 3D vasculature and brain CTA with deep neural networks: Application to LVO.

Journal: iScience

Authors' code: uma-lal/strategies-to-combine-vasculature-brain-cta (no license)

Status: code verified, 4 files readable

[30776] doi:10.1016/j.isci.2024.108895 [paper]

NG2 glia reprogramming induces robust axonal regeneration after spinal cord injury.

Journal: iScience

Status: code on request

[30777] doi:10.1016/j.xpro.2024.102837 [paper, repository]

Protocol for image-based small-molecule screen to identify neuroprotective compounds for dopaminergic neurons in zebrafish.

Journal: STAR protocols

Authors' code: Zenodo 10360186 (CC-BY-4.0), happyiowa/screening-protocol (no license)

Status: code verified

[30778] doi:10.1038/s41419-023-06414-7 [paper, data]

Cortical microinfarcts potentiate recurrent ischemic injury through NLRP3-dependent trained immunity.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[30779] doi:10.1038/s41467-023-40408-5 [paper, repository]

Epigenetic reprogramming shapes the cellular landscape of schwannoma.

Journal: Nature communications

Authors' code: SpitzerLab/statisticalScaffold (no license), liujohn/schwannoma (no license), codeocean:0193242 (no license)

Status: code verified, 34 files readable, 26 matches

[30780] doi:10.1038/s41593-023-01542-x [paper, repository]

Dopamine-independent effect of rewards on choices through hidden-state inference.

Journal: Nature neuroscience

Authors' code: pycontrol/hardware (no license), Mblancopozo/two-step_dopamine (GPL-3.0), Zenodo 10093116 (CC-BY-4.0), ThomasAkam/PFC-BG_model (GPL-3.0), Zenodo 10079814 (CC-BY-4.0)

Status: code verified, 67 files readable, 23 matches

[30781] doi:10.1038/s41598-023-50408-6 [paper, repository]

Attention-based fusion of multiple graphheat networks for structural to functional brain mapping.

Journal: Scientific reports

Authors' code: maxwass/brain_data_processing (no license)

Status: code verified, 186 files readable, 2 matches

[30782] doi:10.1038/s41598-023-50834-6 [paper, repository]

MedGAN: optimized generative adversarial network with graph convolutional networks for novel molecule design.

Journal: Scientific reports

Authors' code: bmacedo111/MedGAN (no license)

Status: code verified, 7 files readable, 5 matches

[30783] doi:10.1038/s41598-024-51759-4 [paper, data]

Early involvement of peripherally derived monocytes in inflammation in an NMO-like mouse model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30784] doi:10.1038/s44220-023-00187-w [paper, repository]

Neuroanatomical dimensions in medication-free individuals with major depressive disorder and treatment response to SSRI antidepressant medications or placebo.

Journal: Nature. Mental health

Authors' code: evarol/HYDRA (other), evarol/MIDAS (other), cran.r-project.org/web/packages (no license)

Status: code verified, 20 files readable, 1 match

[30785] doi:10.1073/pnas.2307996120 [paper, repository]

Spiking at the edge: Excitability at interfaces in reaction-diffusion systems.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10426295 (CC-BY-4.0), Zenodo 10426296 (CC-BY-4.0)

Status: code verified

[30786] doi:10.1080/24740527.2023.2300026 [paper, data]

Changes in pain following bilateral intermittent theta-burst, transcranial magnetic stimulation for depression: A retrospective chart review.

Journal: Canadian journal of pain = Revue canadienne de la douleur

Status: data only, 1 dataset cited

[30787] doi:10.1088/1741-2552/ad141e [paper, data]

Evaluating and benchmarking the EEG signal quality of high-density, dry MXene-based electrode arrays against gelled Ag/AgCl electrodes.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[30788] doi:10.1186/s13041-024-01076-8 [paper, data]

Long-term inhibition of ODC1 in APP/PS1 mice rescues amyloid pathology and switches astrocytes from a reactive to active state.

Journal: Molecular brain

Status: data only, 1 dataset cited

[30789] doi:10.1371/journal.pcbi.1011274 [paper, repository]

Controlling target brain regions by optimal selection of input nodes.

Journal: PLoS computational biology

Authors' code: karankabbur/Effective-connectivity-and-Controllability-in-brain-dynamics (no license)

Status: code verified, 3 files readable, 3 matches

[30790] doi:10.3389/fncel.2023.1321632 [paper, data]

DISC1 and reelin interact to alter cognition, inhibition, and neurogenesis in a novel mouse model of schizophrenia.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[30791] doi:10.3389/fneur.2023.1287559 [paper, data]

Iron homeostasis and post-hemorrhagic hydrocephalus: a review.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[30792] doi:10.3389/fnmol.2023.1324922 [paper, data]

ΔFosB is part of a homeostatic mechanism that protects the epileptic brain from further deterioration.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[30793] doi:10.3390/ani14020248 [paper, repository]

Multiple Tissues Transcriptome of Zig-Zag Eel (<i>Mastacembelus armatus</i>) with Different Growth Rates.

Journal: Animals : an open access journal from MDPI

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[30794] doi:10.7554/elife.89867 [paper, data]

A preclinical model of THC edibles that produces high-dose cannabimimetic responses.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 11 January 2024 (28 papers)

[30795] doi:10.1016/j.dcn.2024.101342 [paper, repository]

Friendship changes differentially predict neural correlates of decision-making for friends across adolescence.

Journal: Developmental cognitive neuroscience

Authors' code: sehjookwon/BFStability_3dlmer (no license)

Status: code verified, 1 file readable

[30796] doi:10.1016/j.isci.2024.108870 [paper]

Genetic and chemical disruption of amyloid precursor protein processing impairs zebrafish sleep maintenance.

Journal: iScience

Status: code on request

[30797] doi:10.1016/j.isci.2024.108872 [paper, data]

Genetic background variation impacts microglial heterogeneity and disease progression in amyotrophic lateral sclerosis model mice.

Journal: iScience

Status: code on request, 1 dataset cited

[30798] doi:10.1038/s41420-023-01774-7 [paper, data]

Apically localized PANX1 impacts neuroepithelial expansion in human cerebral organoids.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[30799] doi:10.1038/s41467-023-44343-3 [paper, data]

OXR1 maintains the retromer to delay brain aging under dietary restriction.

Journal: Nature communications

Status: data only, 1 dataset cited

[30800] doi:10.1038/s41467-024-44747-9 [paper, data]

Diabetic sensory neuropathy and insulin resistance are induced by loss of UCHL1 in Drosophila.

Journal: Nature communications

Status: data only, 1 dataset cited

[30801] doi:10.1038/s41593-023-01545-8 [paper, data]

Long-term labeling and imaging of synaptically connected neuronal networks in vivo using double-deletion-mutant rabies viruses.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[30802] doi:10.1038/s41598-023-47934-8 [paper, repository]

Multi-site benchmark classification of major depressive disorder using machine learning on cortical and subcortical measures.

Journal: Scientific reports

Authors' code: Jfortin1/ComBatHarmonization (no license)

Status: code verified, 17 files readable

[30803] doi:10.1038/s41598-023-50874-y [paper, repository]

Unbalanced regularized optimal mass transport with applications to fluid flows in the brain.

Journal: Scientific reports

Authors' code: xinan-nancy-chen/urOMT (MIT), Zenodo 7839019 (other-open)

Status: code verified, 56 files readable, 2 matches

[30804] doi:10.1073/pnas.2220532121 [paper, data]

Cortical &lt;i&gt;miR-709&lt;/i&gt; links glutamatergic signaling to NREM sleep EEG slow waves in an activity-dependent manner.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30805] doi:10.1111/acel.14076 [paper, data]

Cell type-specific regulation of m&lt;sup&gt;6&lt;/sup&gt; A modified RNAs in the aging Drosophila brain.

Journal: Aging cell

Status: data only, 1 dataset cited

[30806] doi:10.1111/acel.14082 [paper, repository]

Age-regulated cycling metabolites are relevant for behavior.

Journal: Aging cell

Authors' code: HungryFly/flyARC (no license), cthsu86/damSleepConverter (no license)

Status: code verified, 42 files readable, 3 matches

[30807] doi:10.1111/bpa.13239 [paper]

Morphology-based molecular classification of spinal cord ependymomas using deep neural networks.

Journal: Brain pathology (Zurich, Switzerland)

Status: code on request

[30808] doi:10.1136/bmjment-2023-300936 [paper, data]

Genome-wide DNA methylation risk scores for schizophrenia derived from blood and brain tissues further explain the genetic risk in patients stratified by polygenic risk scores for schizophrenia and bipolar disorder.

Journal: BMJ mental health

Status: data only, 1 dataset cited

[30809] doi:10.1162/imag_a_00059 [paper, repository]

&lt;i&gt;In vivo&lt;/i&gt; parcellation of the human spinal cord functional architecture.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: c4science.ch/source/icaps (no license)

Status: code found, still to be checked

[30810] doi:10.1162/imag_a_00066 [paper]

Vascular architecture mapping reveals sex-specific changes in cerebral microvasculature with aging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[30811] doi:10.1162/imag_a_00067 [paper, data]

An individualized tractography pipeline for the nucleus basalis of Meynert lateral tract.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[30812] doi:10.1186/s10194-023-01711-0 [paper, data]

Involvement of the ipsilateral-to-the-pain anterior-superior hypothalamic subunit in chronic cluster headache.

Journal: The journal of headache and pain

Status: data only, 3 datasets cited

[30813] doi:10.1186/s12974-023-03007-1 [paper, data]

CD4 T-cell aging exacerbates neuroinflammation in a late-onset mouse model of amyotrophic lateral sclerosis.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[30814] doi:10.1186/s12987-023-00505-5 [paper, data]

Hydraulic resistance of three-dimensional pial perivascular spaces in the brain.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[30815] doi:10.1186/s40001-024-01640-x [paper, data]

Identification of potential biomarkers and therapeutic targets related to post-traumatic stress disorder due to traumatic brain injury.

Journal: European journal of medical research

Status: data only, 1 dataset cited

[30816] doi:10.1186/s40001-024-01643-8 [paper]

Identification of potential crucial genes and therapeutic targets for epilepsy.

Journal: European journal of medical research

Status: data only

[30817] doi:10.1371/journal.pbio.3002475 [paper, repository]

Neuronal tuning to threat exposure remains stable in the mouse prefrontal cortex over multiple days.

Journal: PLoS biology

Authors' code: Zenodo 10378756 (CC-BY-4.0)

Status: code verified, 20 files readable, 10 matches

[30818] doi:10.1371/journal.pcbi.1011783 [paper, repository]

Transformations of sensory information in the brain suggest changing criteria for optimality.

Journal: PLoS computational biology

Authors' code: eacooper/FisherInformationInV1V2MT_PLOSCB (MIT)

Status: code verified, 46 files readable, 21 matches

[30819] doi:10.1523/eneuro.0315-23.2023 [paper]

Striatal Neurons Are Recruited Dynamically into Collective Representations of Self-Initiated and Learned Actions in Freely Moving Mice.

Journal: eNeuro

Status: code on request

[30820] doi:10.1523/eneuro.0392-23.2023 [paper, repository]

Increasing Accessibility to Neuroscience through Translation: Going beyond the English Language.

Journal: eNeuro

Authors' code: albaperis/Translation-Project-Knowing-Neurons (CC-BY-NC-SA-4.0)

Status: code verified, 3 files readable, 1 match

[30821] doi:10.3389/fnimg.2023.1239703 [paper, repository]

Siamese model for collateral score prediction from computed tomography angiography images in acute ischemic stroke.

Journal: Frontiers in neuroimaging

Authors' code: radiology/igit/accurate/siamese_model (no license)

Status: code verified, 3 files readable, 4 matches

[30822] doi:10.3389/fnins.2023.1286665 [paper, repository]

Facing emotions: real-time fMRI-based neurofeedback using dynamic emotional faces to modulate amygdala activity.

Journal: Frontiers in neuroscience

Authors' code: alyssaq/face_morpher (no license)

Status: code verified, 13 files readable

Wednesday, 10 January 2024 (32 papers)

[30823] doi:10.1002/dad2.12513 [paper, data]

Microstructural alterations in the locus coeruleus-entorhinal cortex pathway in Alzheimer's disease and frontotemporal dementia.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: data only, 1 dataset cited

[30824] doi:10.1007/s00401-023-02657-y [paper, repository]

Distinct tau and alpha-synuclein molecular signatures in Alzheimer's disease with and without Lewy bodies and Parkinson's disease with dementia.

Journal: Acta neuropathologica

Authors' code: qupath.readthedocs.io (no license)

Status: code verified

[30825] doi:10.1007/s00429-023-02747-3 [paper, repository]

Inter-individual, hemispheric and sex variability of brain activations during numerosity processing.

Journal: Brain structure & function

Authors' code: zangzhongyao/Data-and-code- (no license)

Status: code verified, 3 files readable

[30826] doi:10.1016/j.crmeth.2023.100684 [paper]

An enhancer-AAV approach selectively targeting dentate granule cells of the mouse hippocampus.

Journal: Cell reports methods

Status: code on request

[30827] doi:10.1016/j.cub.2023.12.030 [paper, repository]

The preoptic area and dorsal habenula jointly support homeostatic navigation in larval zebrafish.

Journal: Current biology : CB

Authors' code: EmanPaoli/PalieriPaoli (no license), portugueslab/fimpy (GPL-3.0), Zenodo 5932227 (other-open)

Status: code verified, 101 files readable, 7 matches

[30828] doi:10.1016/j.omtm.2024.101185 [paper]

Improving cell-specific recombination using AAV vectors in the murine CNS by capsid and expression cassette optimization.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[30829] doi:10.1038/s41380-023-02343-1 [paper, data]

Mapping gray and white matter volume abnormalities in early-onset psychosis: an ENIGMA multicenter voxel-based morphometry study.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[30830] doi:10.1038/s41467-024-44732-2 [paper, repository]

Disruption of lysosomal proteolysis in astrocytes facilitates midbrain organoid proteostasis failure in an early-onset Parkinson's disease model.

Journal: Nature communications

Authors' code: blanchardlab/Parfitt2023 (no license)

Status: code verified, 2 files readable, 2 matches

[30831] doi:10.1038/s41586-023-06899-4 [paper, repository]

Nasopharyngeal lymphatic plexus is a hub for cerebrospinal fluid drainage.

Journal: Nature

Authors' code: Zenodo 10115336 (CC-BY-4.0), Zenodo 8286107 (CC-BY-4.0), Zenodo 8286119 (CC-BY-4.0), center-for-vascular-research/nplp (no license)

Status: code verified, 4 files readable, 4 matches

[30832] doi:10.1038/s41593-023-01535-w [paper]

Distributional reinforcement learning in prefrontal cortex.

Journal: Nature neuroscience

Status: code on request

[30833] doi:10.1073/pnas.2308837121 [paper, data]

A predisposed motor bias shapes individuality in vocal learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30834] doi:10.1073/pnas.2309906121 [paper, repository]

Inactivation of face-selective neurons alters eye movements when free viewing faces.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10426591 (CC-BY-4.0)

Status: code verified, 98 files readable, 1 match

[30835] doi:10.1073/pnas.2311885121 [paper, repository]

Neural heterogeneity controls computations in spiking neural networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10126327 (CC-BY-4.0), pyrates-neuroscience/pyrates (GPL-3.0)

Status: code verified, 183 files readable, 7 matches

[30836] doi:10.1073/pnas.2314699121 [paper, repository]

Local and dynamic regulation of neuronal glycolysis in vivo.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 8280730 (other-open), colonramoslab/wolfe-2023_scripts (MIT)

Status: code verified, 4 files readable

[30837] doi:10.1073/pnas.2316542121 [paper, data]

BRCA1 and ELK-1 regulate neural progenitor cell fate in the optic tectum in response to visual experience in <i>Xenopus laevis</i> tadpoles.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30838] doi:10.1093/braincomms/fcae007 [paper, repository]

Scaling behaviours of deep learning and linear algorithms for the prediction of stroke severity.

Journal: Brain communications

Authors' code: bouracha/stroke_outcome_DL_v_LR (no license)

Status: code verified, 3 files readable, 2 matches

[30839] doi:10.1093/pnasnexus/pgae010 [paper, repository]

Sensory input to cortex encoded on low-dimensional periphery-correlated subspaces.

Journal: PNAS nexus

Authors' code: figshare 24802944 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[30840] doi:10.1101/2024.01.09.24301030 [paper, data]

Population clustering of structural brain aging and its association with brain development

Journal: medRxiv (preprint)

Status: data only, 1 dataset cited

[30841] doi:10.1126/sciadv.adi8287 [paper, repository]

Molecular profiling of human substantia nigra identifies diverse neuron types associated with vulnerability in Parkinson's disease.

Journal: Science advances

Authors' code: Zenodo 10119032 (CC-BY-4.0)

Status: code verified, 7 files readable, 7 matches

[30842] doi:10.1126/sciadv.adj4457 [paper, data]

TDP-43 impairs sleep in &lt;i&gt;Drosophila&lt;/i&gt; through &lt;i&gt;Ataxin-2&lt;/i&gt;-dependent metabolic disturbance.

Journal: Science advances

Status: data only, 1 dataset cited

[30843] doi:10.1126/scitranslmed.adi2403 [paper, data]

Rapid-acting antidepressant drugs modulate affective bias in rats.

Journal: Science translational medicine

Status: data only, 1 dataset cited

[30844] doi:10.1136/bmjno-2023-000584 [paper, repository]

Detecting signatures of consciousness in acute brain injury after stimulation with apomorphine and methylphenidate: protocol for a placebo-controlled, randomized, cross-over study.

Journal: BMJ neurology open

Authors' code: Zenodo 6627565 (CC-BY-4.0)

Status: empty repository

[30845] doi:10.1152/jn.00369.2023 [paper, repository]

Transcranial magnetic stimulation over supramarginal gyrus stimulates primary motor cortex directly and impairs manual dexterity: implications for TMS focality.

Journal: Journal of neurophysiology

Authors' code: OSF 2xytm (no license)

Status: code verified, 28 files readable, 11 matches

[30846] doi:10.1177/20417314231219280 [paper]

Mesenchymal stem cells overexpressing XIST induce macrophage M2 polarization and improve neural stem cell homeostatic microenvironment, alleviating spinal cord injury.

Journal: Journal of tissue engineering

Status: data only

[30847] doi:10.1371/journal.pbio.3002452 [paper, repository]

The parietal cortex has a causal role in ambiguity computations in humans.

Journal: PLoS biology

Authors' code: neurocics (no license)

Status: code verified

[30848] doi:10.1371/journal.pcbi.1011792 [paper, repository]

High-performing neural network models of visual cortex benefit from high latent dimensionality.

Journal: PLoS computational biology

Authors' code: EricElmoznino/encoder_dimensionality (MIT)

Status: code verified, 70 files readable, 6 matches

[30849] doi:10.1523/jneurosci.0803-23.2023 [paper, repository]

Characterizing Spatiotemporal Population Receptive Fields in Human Visual Cortex with fMRI.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: VPNL/stPRF (GPL-3.0), vistalab/PRFmodel (MIT)

Status: code verified, 373 files readable, 6 matches

[30850] doi:10.3389/fnins.2023.1303564 [paper, repository]

Efficient and generalizable cross-patient epileptic seizure detection through a spiking neural network.

Journal: Frontiers in neuroscience

Authors' code: snowbbbb/EESNN-epileptic-seizure-detection (no license)

Status: code verified, 58 files readable, 2 matches

[30851] doi:10.3389/fphys.2023.1326307 [paper, repository]

Minimal circuit motifs for second-order conditioning in the insect mushroom body.

Journal: Frontiers in physiology

Authors' code: nawrotlab/exploring_SOC_circuits (no license)

Status: code verified, 32 files readable, 2 matches

[30852] doi:10.3390/biomedicines12010147 [paper, repository]

Accelerated Brain Atrophy, Microstructural Decline and Connectopathy in Age-Related Macular Degeneration.

Journal: Biomedicines

Authors' code: jacquesstout/dtc_private (no license)

Status: code verified, 268 files readable

[30853] doi:10.3758/s13415-023-01144-x [paper, data]

Improving preclinical to clinical translation of cognitive function for aging-related disorders: the utility of comprehensive touchscreen testing batteries in common marmosets.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request, 1 dataset cited

[30854] doi:10.3758/s13415-023-01151-y [paper, repository]

Preexposure to one social threat alters responses to another social threat: Behavioral and electrophysiological evidence.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF dbmcr (no license)

Status: code verified, 9 files readable, 2 matches

Tuesday, 9 January 2024 (38 papers)

[30855] doi:10.1007/s00401-023-02665-y [paper, data]

Novel lissencephaly-associated NDEL1 variant reveals distinct roles of NDE1 and NDEL1 in nucleokinesis and human cortical malformations.

Journal: Acta neuropathologica

Status: data only, 2 datasets cited

[30856] doi:10.1007/s00429-023-02748-2 [paper, repository]

Clustering the cortical laminae: in vivo parcellation.

Journal: Brain structure & function

Authors' code: ittais/Laminar_Connectivity (no license)

Status: code verified, 2 files readable

[30857] doi:10.1016/j.isci.2024.108819 [paper]

May I see what you see? Predicting visual features from neuronal activity.

Journal: iScience

Status: code on request

[30858] doi:10.1016/j.isci.2024.108824 [paper]

Ventral hippocampal cholecystokinin interneurons gate contextual reward memory.

Journal: iScience

Status: code on request

[30859] doi:10.1016/j.isci.2024.108828 [paper]

Investigation of synergic effects of nanogroove topography and polyaniline-chitosan nanocomposites on PC12 cell differentiation and axonogenesis.

Journal: iScience

Status: code on request

[30860] doi:10.1016/j.isci.2024.108829 [paper, repository]

Cell-type specific circadian transcription factor BMAL1 roles in excitotoxic hippocampal lesions to enhance neurogenesis.

Journal: iScience

Authors' code: gangwug/MetaCycle (GPL)

Status: code verified, 14 files readable, 1 match

[30861] doi:10.1016/j.isci.2024.108838 [paper]

Extracellular matrix protein composition dynamically changes during murine forelimb development.

Journal: iScience

Status: code on request

[30862] doi:10.1016/j.isci.2024.108844 [paper, repository]

The paddy frog genome provides insight into the molecular adaptations and regulation of hibernation in ectotherms.

Journal: iScience

Authors' code: xiaochuanle/MECAT2 (gpl), aidenlab/Juicebox (MIT)

Status: code verified, 627 files readable

[30863] doi:10.1016/j.isci.2024.108845 [paper, repository]

Emergence of brain-inspired small-world spiking neural network through neuroevolution.

Journal: iScience

Authors' code: combra-lab/NALSM (MIT), braincog-x/brain-cog (Apache-2.0), zalandoresearch/fashion-mnist (MIT)

Status: code verified, 605 files readable, 3 matches

[30864] doi:10.1016/j.isci.2024.108846 [paper, data]

Neural extracellular matrix regulates visual sensory motor integration.

Journal: iScience

Status: code on request, 1 dataset cited

[30865] doi:10.1016/j.isci.2024.108847 [paper]

A pilot study on a patient with refractory headache: Personalized deep brain stimulation through stereoelectroencephalography.

Journal: iScience

Status: code on request

[30866] doi:10.1038/s41398-023-02724-8 [paper, repository]

Integrative omics analysis reveals epigenomic and transcriptomic signatures underlying brain structural deficits in major depressive disorder.

Journal: Translational psychiatry

Authors' code: BMHLab/AHBAprocessing (no license), zhengjunjie1234/MDD_gmv_methylation (no license)

Status: code verified, 390 files readable, 2 matches

[30867] doi:10.1038/s41467-023-42677-6 [paper, repository]

A full-body transcription factor expression atlas with completely resolved cell identities in C. elegans.

Journal: Nature communications

Authors' code: Zenodo 8399308 (other-open), Zenodo 8399277 (other-open), lybcnu/cellexplorer (no license)

Status: code verified, 19 files readable, 1 match

[30868] doi:10.1038/s41467-023-44205-y [paper, data]

Stress-induced vagal activity influences anxiety-relevant prefrontal and amygdala neuronal oscillations in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[30869] doi:10.1038/s41467-023-44633-w [paper, data]

Lateral hypothalamic glutamatergic inputs to VTA glutamatergic neurons mediate prioritization of innate defensive behavior over feeding.

Journal: Nature communications

Status: data only, 2 datasets cited

[30870] doi:10.1038/s41531-024-00629-x [paper]

Cortical thickness and white matter microstructure predict freezing of gait development in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[30871] doi:10.1038/s41531-024-00630-4 [paper, repository]

Neurocognitive correlates of semantic memory navigation in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: OSF 8pufk (no license)

Status: code verified, 4 files readable, 3 matches

[30872] doi:10.1038/s41598-023-48715-z [paper, repository]

Cross-sectional and longitudinal neural predictors of physical activity and sedentary behaviour from a 6-month randomized controlled trial.

Journal: Scientific reports

Authors' code: ryanfalck/Now_and_Later (no license)

Status: empty repository, 1 file readable

[30873] doi:10.1038/s43587-023-00550-7 [paper, data]

Cerebrospinal fluid proteomics in patients with Alzheimer's disease reveals five molecular subtypes with distinct genetic risk profiles.

Journal: Nature aging

Status: data only, 3 datasets cited

[30874] doi:10.1073/pnas.2307776121 [paper, repository]

A structurally precise mechanism links an epilepsy-associated &lt;i&gt;KCNC2&lt;/i&gt; potassium channel mutation to interneuron dysfunction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ChrisCurrin/pv-kcnc2 (GPL-3.0)

Status: code verified, 41 files readable, 1 match

[30875] doi:10.1073/pnas.2312031121 [paper, repository]

Toward the quantification of α-synuclein aggregates with digital seed amplification assays.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Wyss/chip-extract (no license)

Status: code verified, 6 files readable

[30876] doi:10.1073/pnas.2317668121 [paper, data]

Disruption of DNA methylation-mediated cranial neural crest proliferation and differentiation causes orofacial clefts in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[30877] doi:10.1159/000535475 [paper, data]

Internal Carotid Artery Dissection Presenting with Transient or Subclinical Horner Syndrome.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[30878] doi:10.1162/imag_a_00056 [paper]

EMG-projected MEG high-resolution source imaging of human motor execution: Brain-muscle coupling above movement frequencies.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[30879] doi:10.1162/imag_a_00058 [paper, repository]

Spatial-extent inference for testing variance components in reliability and heritability studies.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: junjypark/CLEAN (MIT)

Status: code verified, 23 files readable

[30880] doi:10.1162/imag_a_00060 [paper, repository]

Denoising diffusion MRI: Considerations and implications for analysis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: SPMIC-UoN/EDDEN (no license), Zenodo 8059550 (other-open), SteenMoeller/NORDIC_Raw (other), spmic-uon/brc_pipeline (no license)

Status: code verified, 142 files readable, 33 matches

[30881] doi:10.1162/imag_a_00061 [paper, repository]

Unraveling neural complexity: Exploring brain entropy to yield mechanistic insight in neuromodulation therapies for tobacco use disorder.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: thomasyeolab/cbig (MIT), humanbrainzappingatucla (no license), HumanBrainZappingatUCLA/Entropy (no license)

Status: code verified, 2,017 files readable, 2 matches

[30882] doi:10.1172/jci169562 [paper, data]

Interferon-α receptor antisense oligonucleotides reduce neuroinflammation and neuropathology in a mouse model of cerebral interferonopathy.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[30883] doi:10.1186/s40035-023-00395-5 [paper, data]

Death-associated protein kinase 1 as a therapeutic target for Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[30884] doi:10.1186/s40708-023-00217-4 [paper, repository]

Deep learning based joint fusion approach to exploit anatomical and functional brain information in autism spectrum disorders.

Journal: Brain informatics

Authors' code: rpomponio/neuroHarmonize (MIT)

Status: code verified, 12 files readable

[30885] doi:10.1242/dev.202236 [paper, data]

Postnatal persistence of hippocampal Cajal-Retzius cells has a crucial role in the establishment of the hippocampal circuit.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[30886] doi:10.18632/aging.205415 [paper, data]

Novel diagnostic biomarkers of oxidative stress, ferroptosis, immune infiltration characteristics and experimental validation in ischemic stroke.

Journal: Aging

Status: data only, 1 dataset cited

[30887] doi:10.3389/fnetp.2023.1335808 [paper, repository]

Gradients of O-information highlight synergy and redundancy in physiological applications.

Journal: Frontiers in network physiology

Authors' code: tomscag/GOI (MIT)

Status: code verified, 17 files readable

[30888] doi:10.3389/fnimg.2023.1345643 [paper, data]

A reappraisal of the default mode and frontoparietal networks in the common marmoset brain.

Journal: Frontiers in neuroimaging

Status: data only, 1 dataset cited

[30889] doi:10.7554/elife.85753 [paper, repository]

MTL neurons phase-lock to human hippocampal theta.

Journal: eLife

Authors' code: Zenodo 10701127 (CC-BY-4.0), dschonhaut/phase_locking (no license)

Status: code verified, 26 files readable, 6 matches

[30890] doi:10.7554/elife.90136 [paper, repository]

Notch signaling and Bsh homeodomain activity are integrated to diversify <i>Drosophila</i> lamina neuron types.

Journal: eLife

Authors' code: marshall-lab/Xu_et_al_2023 (GPL-2.0), owenjm/find_peaks (no license)

Status: code verified, 4 files readable, 1 match

[30891] doi:10.7554/elife.91153 [paper, repository]

Experience shapes chandelier cell function and structure in the visual cortex.

Journal: eLife

Authors' code: OSF 76fk9 (no license)

Status: code verified, 23 files readable, 14 matches

[30892] doi:10.7554/elife.91599 [paper, repository]

Balance of activity during a critical period tunes a developing network.

Journal: eLife

Authors' code: virhunter/vibrationduringdevelopment (no license)

Status: empty repository

Monday, 8 January 2024 (30 papers, 20 on this page)

[30893] doi:10.1002/mrm.29991 [paper, repository]

Pore size estimation in axon-mimicking microfibers with diffusion-relaxation MRI.

Journal: Magnetic resonance in medicine

Authors' code: ejcanalesr/diffusion-relaxation-biomimetic-phantoms (no license)

Status: code verified, 8 files readable, 2 matches

[30894] doi:10.1007/s00330-023-10522-5 [paper, data]

Normal cohorts in automated brain atrophy estimation: how many healthy subjects to include?

Journal: European radiology

Status: data only, 1 dataset cited

[30895] doi:10.1016/j.celrep.2023.113634 [paper, data]

Oligodendrocyte-derived LGI3 and its receptor ADAM23 organize juxtaparanodal Kv1 channel clustering for short-term synaptic plasticity.

Journal: Cell reports

Status: code on request, 2 datasets cited

[30896] doi:10.1016/j.celrep.2023.113669 [paper]

Ventral pallidum neurons projecting to the ventral tegmental area reinforce but do not invigorate reward-seeking behavior.

Journal: Cell reports

Status: code on request

[30897] doi:10.1016/j.isci.2024.108808 [paper]

Vinorelbine causes a neuropathic pain-like state in mice via STING and MNK1 signaling associated with type I interferon induction.

Journal: iScience

Status: code on request

[30898] doi:10.1016/j.isci.2024.108825 [paper, repository]

Spatial patterns of noise-induced inner hair cell ribbon loss in the mouse mid-cochlea.

Journal: iScience

Authors' code: MiRA-lab-dev/IHC_organelles_detection (no license)

Status: code verified, 28 files readable

[30899] doi:10.1016/j.jbc.2024.105629 [paper, data]

The transcription factor NF-YA is crucial for neural progenitor maintenance during brain development.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[30900] doi:10.1038/s41398-023-02711-z [paper]

Mapping Gilles de la Tourette syndrome through the distress and relief associated with tic-related behaviors: an fMRI study.

Journal: Translational psychiatry

Status: code on request

[30901] doi:10.1038/s41467-023-44271-2 [paper, repository]

Gene-SGAN: discovering disease subtypes with imaging and genetic signatures via multi-view weakly-supervised deep clustering.

Journal: Nature communications

Authors' code: pypi.org/project/genesgan (no license), zhijian-yang/GeneSGAN (no license), Zenodo 10058768 (CC-BY-4.0)

Status: code verified, 24 files readable, 5 matches

[30902] doi:10.1038/s41467-023-44300-0 [paper, repository]

Developmental basis of SHH medulloblastoma heterogeneity.

Journal: Nature communications

Authors' code: fraenkel-lab/shh-mben (MIT)

Status: code verified, 20 files readable, 27 matches

[30903] doi:10.1038/s41467-023-44322-8 [paper, data]

Persistent enhancement of basolateral amygdala-dorsomedial striatum synapses causes compulsive-like behaviors in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[30904] doi:10.1038/s41467-023-44658-1 [paper, data]

hnRNP A1 dysfunction alters RNA splicing and drives neurodegeneration in multiple sclerosis (MS).

Journal: Nature communications

Status: data only, 1 dataset cited

[30905] doi:10.1038/s41467-023-44681-2 [paper, repository]

Functional neuronal circuits emerge in the absence of developmental activity.

Journal: Nature communications

Authors' code: Zenodo 10262467 (CC-BY-4.0), bdanubius/innatefish (MIT)

Status: code verified, 14 files readable, 1 match

[30906] doi:10.1038/s41598-023-47069-w [paper, data]

In silico anti-alzheimer study of phytochemicals from Lamiaceae family through GSK3-β inhibition.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30907] doi:10.1038/s41598-023-49977-3 [paper, repository]

Solving real-world optimization tasks using physics-informed neural computing.

Journal: Scientific reports

Authors' code: jaem-seo/pinn-optimization (no license)

Status: code verified, 10 files readable

[30908] doi:10.1038/s41598-023-50438-0 [paper, repository]

Subcortical responses to music and speech are alike while cortical responses diverge.

Journal: Scientific reports

Authors' code: maddoxlab/Music_vs_Speech_abr (no license)

Status: code verified, 16 files readable, 5 matches

[30909] doi:10.1038/s41598-023-50667-3 [paper, data]

Validated assays for the quantification of C9orf72 human pathology.

Journal: Scientific reports

Status: data only, 1 dataset cited

[30910] doi:10.1038/s41598-023-50705-0 [paper, repository]

Named entity recognition in aerospace based on multi-feature fusion transformer.

Journal: Scientific reports

Authors' code: kfcd/chaizi (other)

Status: empty repository, 2 files readable

[30911] doi:10.1038/s41598-023-50760-7 [paper, repository]

Predicting the subjective intensity of imagined experiences from electrophysiological measures of oscillatory brain activity.

Journal: Scientific reports

Authors' code: espace.library.uq.edu.au (no license)

Status: code found, still to be checked

[30912] doi:10.1038/s41598-023-50785-y [paper, data]

Time of day bias for biological sampling in studies of mammary cancer.

Journal: Scientific reports

Status: data only, 1 dataset cited

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