Every paper, by date: page 143

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 143 of 200: 1 December 2023 to 22 November 2023.

Friday, 1 December 2023 (56 papers, 27 on this page)

[31809] doi:10.1080/22221751.2022.2156815 [paper, data]

Differential effects of Usutu and West Nile viruses on neuroinflammation, immune cell recruitment and blood-brain barrier integrity.

Journal: Emerging microbes & infections

Status: data only, 1 dataset cited

[31810] doi:10.1093/bioinformatics/btad746 [paper, repository]

Bibliometric analysis of neuroscience publications quantifies the impact of data sharing.

Journal: Bioinformatics (Oxford, England)

Authors' code: HerveEmissah/nmo-bibliometric-analysis (MIT)

Status: code verified, 3 files readable

[31811] doi:10.1093/brain/awad232 [paper, repository]

A data-driven study of Alzheimer's disease related amyloid and tau pathology progression.

Journal: Brain : a journal of neurology

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable

[31812] doi:10.1093/brain/awad233 [paper, repository]

Beta-triggered adaptive deep brain stimulation during reaching movement in Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: data.mrc.ox.ac.uk/mrcbndu/data-sets (no license)

Status: code verified

[31813] doi:10.1093/brain/awad246 [paper, repository]

The non-specific lethal complex regulates genes and pathways genetically linked to Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: amyrosehicks/NSL_PD_relationships (MIT), Zenodo 7525823 (other-open), NathanSkene/EWCE (no license), bulik/ldsc (GPL-3.0), RHReynolds/MarkerGenes (MIT), califano-lab/ARACNe-AP (other), RHReynolds/rutils (no license)

Status: code verified, 278 files readable, 7 matches

[31814] doi:10.1093/brain/awad250 [paper]

Restoring neuronal chloride extrusion reverses cognitive decline linked to Alzheimer's disease mutations.

Journal: Brain : a journal of neurology

Status: code on request

[31815] doi:10.1093/brain/awad257 [paper, repository]

Biallelic MED27 variants lead to variable ponto-cerebello-lental degeneration with movement disorders.

Journal: Brain : a journal of neurology

Authors' code: matteoferla/MED27_analysis (MIT)

Status: code verified, 5 files readable

[31816] doi:10.1093/brain/awad331 [paper, data]

Neuromelanin accumulation drives endogenous synucleinopathy in non-human primates.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[31817] doi:10.1093/cercor/bhad389 [paper, data]

Neurophysiological evidence of motor preparation in inner speech and the effect of content predictability.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[31818] doi:10.1093/cercor/bhad396 [paper, data]

Brain asymmetry is globally different in males and females: exploring cortical volume, area, thickness, and mean curvature.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[31819] doi:10.1093/g3journal/jkad220 [paper, repository]

A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797).

Journal: G3 (Bethesda, Md.)

Authors' code: cnag-aat/assembly_pipeline (MIT)

Status: code verified, 21 files readable, 1 match

[31820] doi:10.1093/ijnp/pyad057 [paper, data]

Integrative Analyses of scRNA-seq, Bulk mRNA-seq, and DNA Methylation Profiling in Depressed Suicide Brain Tissues.

Journal: The international journal of neuropsychopharmacology

Status: data only, 1 dataset cited

[31821] doi:10.1093/scan/nsad068 [paper, repository]

Cultural variation in neural responses to social but not monetary reward outcomes.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 82974 (no license)

Status: code found, still to be checked

[31822] doi:10.1126/sciadv.adi4927 [paper, repository]

Subsecond fluctuations in extracellular dopamine encode reward and punishment prediction errors in humans.

Journal: Science advances

Authors' code: Zenodo 10067904 (CC-BY-4.0), paulsands/et-dopamine-manuscript (MIT)

Status: code verified, 16 files readable, 7 matches

[31823] doi:10.1126/sciadv.adj3793 [paper, repository]

Early life adversity shapes social subordination and cell type-specific transcriptomic patterning in the ventral hippocampus.

Journal: Science advances

Authors' code: theislab/ELS_analysis (MIT)

Status: code verified, 6 files readable, 3 matches

[31824] doi:10.1158/1078-0432.ccr-23-0834 [paper, data]

Advanced Age in Humans and Mouse Models of Glioblastoma Show Decreased Survival from Extratumoral Influence.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research

Status: data only, 1 dataset cited

[31825] doi:10.1158/2767-9764.crc-23-0154 [paper, data]

Activating Transcription Factor 5 Promotes Neuroblastoma Metastasis by Inducing Anoikis Resistance.

Journal: Cancer research communications

Status: data only, 1 dataset cited

[31826] doi:10.1172/jci168447 [paper, data]

Bone-derived PDGF-BB drives brain vascular calcification in male mice.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[31827] doi:10.1371/journal.pcbi.1011443 [paper, repository]

Learning massive interpretable gene regulatory networks of the human brain by merging Bayesian networks.

Journal: PLoS computational biology

Authors' code: mmichiels/fges_parallel_production (no license)

Status: code verified, 24 files readable, 3 matches

[31828] doi:10.1371/journal.pone.0295297 [paper, data]

Quantifying the effects of vagus nerve stimulation on gastric myoelectric activity in ferrets using an interpretable machine learning approach.

Journal: PloS one

Status: data only, 1 dataset cited

[31829] doi:10.3389/fneur.2023.1291020 [paper, repository]

The predictive validity of a Brain Care Score for dementia and stroke: data from the UK Biobank cohort.

Journal: Frontiers in neurology

Authors' code: biobank.ndph.ox.ac.uk/showcase/showcase (no license)

Status: code verified

[31830] doi:10.3389/fnimg.2023.1252261 [paper, repository]

Pseudo-Label Assisted nnU-Net enables automatic segmentation of 7T MRI from a single acquisition.

Journal: Frontiers in neuroimaging

Authors' code: MIC-DKFZ/nnUNet (Apache-2.0), hdieckhaus/PLAn-7T (no license)

Status: code verified, 242 files readable, 2 matches

[31831] doi:10.3389/fninf.2023.1272243 [paper, repository]

Translating single-neuron axonal reconstructions into meso-scale connectivity statistics in the mouse somatosensory thalamus.

Journal: Frontiers in neuroinformatics

Authors' code: ntimonid/morphological_embedding (no license), ntimonid/Mesoscale_Extractor (MIT), ntimonid/Neuron_Aligner (MIT)

Status: code verified, 62 files readable, 13 matches

[31832] doi:10.3389/fphar.2023.1291246 [paper, repository]

Development and validation of PAMPA-BBB QSAR model to predict brain penetration potential of novel drug candidates.

Journal: Frontiers in pharmacology

Authors' code: chemprop/chemprop (MIT)

Status: code verified, 175 files readable, 2 matches

[31833] doi:10.3390/biomedicines11123199 [paper, data]

Efficient Treatment of Pulpitis via Transplantation of Human Pluripotent Stem Cell-Derived Pericytes Partially through <i>LTBP1</i>-Mediated T Cell Suppression.

Journal: Biomedicines

Status: data only, 1 dataset cited

[31834] doi:10.7554/elife.87022 [paper, data]

Catecholaminergic neuromodulation and selective attention jointly shape perceptual decision-making.

Journal: eLife

Status: data only, 1 dataset cited

[31835] doi:10.7554/elife.88367 [paper, repository]

Event-related modulation of alpha rhythm explains the auditory P300-evoked response in EEG.

Journal: eLife

Authors' code: astudenova/p300_alpha (GPL-3.0)

Status: code verified, 16 files readable, 17 matches

Thursday, 30 November 2023 (42 papers)

[31836] doi:10.1002/advs.202303575 [paper, repository]

Motile Living Biobots Self-Construct from Adult Human Somatic Progenitor Seed Cells.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: swarm-lab.github.io/rvision (no license)

Status: code verified

[31837] doi:10.1002/advs.202304421 [paper, repository]

Spatially Self-Organized Three-Dimensional Neural Concentroid as a Novel Reductionist Humanized Model to Study Neurovascular Development.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: quadbiolab.github.io/voxhunt (no license), resources.aertslab.org/cistarget (no license)

Status: code verified

[31838] doi:10.1002/alz.13538 [paper, repository]

Brain metabolic network covariance and aging in a mouse model of Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: echumin/CovNet (no license)

Status: code verified, 218 files readable, 10 matches

[31839] doi:10.1007/s12021-023-09648-0 [paper, repository]

Preserving Derivative Information while Transforming Neuronal Curves.

Journal: Neuroinformatics

Authors' code: brainlit.neurodata.io (no license)

Status: code verified

[31840] doi:10.1007/s12975-023-01211-y [paper, data]

Sympathetic-Mediated Intestinal Cell Death Contributes to Gut Barrier Impairment After Stroke.

Journal: Translational stroke research

Status: data only, 1 dataset cited

[31841] doi:10.1016/j.celrep.2023.113466 [paper, data]

NGLY1 mutations cause protein aggregation in human neurons.

Journal: Cell reports

Status: code on request, 1 dataset cited

[31842] doi:10.1016/j.celrep.2023.113500 [paper, repository]

CellBiAge: Improved single-cell age classification using data binarization.

Journal: Cell reports

Authors' code: Webb-Laboratory/CellBiAge (MIT), Zenodo 10072378 (CC-BY-4.0)

Status: code verified, 104 files readable, 8 matches

[31843] doi:10.1016/j.celrep.2023.113512 [paper]

Leptin signaling in the dorsomedial hypothalamus couples breathing and metabolism in obesity.

Journal: Cell reports

Status: code on request

[31844] doi:10.1016/j.celrep.2023.113514 [paper, repository]

Astrocytes produce nitric oxide via nitrite reduction in mitochondria to regulate cerebral blood flow during brain hypoxia.

Journal: Cell reports

Authors' code: Zenodo 10080722 (CC-BY-4.0)

Status: code verified

[31845] doi:10.1016/j.dib.2023.109795 [paper, data]

Datasets assessing lipid-content in optically cleared brains.

Journal: Data in brief

Status: data only, 4 datasets cited

[31846] doi:10.1016/j.stemcr.2023.10.021 [paper, data]

ASCL1 induces neurogenesis in human Müller glia.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[31847] doi:10.1021/acsomega.3c06764 [paper, data]

Promising 8-Aminoquinoline-Based Metal Complexes in the Modulation of SIRT1/3-FOXO3a Axis against Oxidative Damage-Induced Preclinical Neurons.

Journal: ACS omega

Status: data only, 1 dataset cited

[31848] doi:10.1038/s41419-023-06275-0 [paper, data]

The mitochondrial NADH shuttle system is a targetable vulnerability for Group 3 medulloblastoma in a hypoxic microenvironment.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[31849] doi:10.1038/s41467-023-43132-2 [paper, repository]

Cell-type-specific Alzheimer's disease polygenic risk scores are associated with distinct disease processes in Alzheimer's disease.

Journal: Nature communications

Authors' code: YangLabADRD/CellADPRS (no license), Zenodo 8475 (MIT), svenkreiss/decouple (MIT)

Status: code verified, 78 files readable, 7 matches

[31850] doi:10.1038/s41467-023-43432-7 [paper, repository]

Targeted V1 comodulation supports task-adaptive sensory decisions.

Journal: Nature communications

Authors' code: CarolineHaimerl27/modulator_guided_decoding (no license)

Status: code verified, 22 files readable, 4 matches

[31851] doi:10.1038/s41467-023-43713-1 [paper, repository]

Augmenting interpretable models with large language models during training.

Journal: Nature communications

Authors' code: HuthLab/deep-fMRI-dataset (MIT), microsoft/augmented-interpretable-models (MIT), Zenodo 10118975 (CC-BY-4.0)

Status: code verified, 170 files readable, 4 matches

[31852] doi:10.1038/s41467-023-43777-z [paper, repository]

Endogenous noise of neocortical neurons correlates with atypical sensory response variability in the Fmr1^-/y mouse model of autism.

Journal: Nature communications

Authors' code: ToGauvrit/ElectroPhyAnalysis (AGPL-3.0)

Status: code verified, 12 files readable, 9 matches

[31853] doi:10.1038/s41588-023-01560-2 [paper, repository]

Isoform-level transcriptome-wide association uncovers genetic risk mechanisms for neuropsychiatric disorders in the human brain.

Journal: Nature genetics

Authors' code: bhattacharya-a-bt/isotwas (no license), bhattacharya-a-bt/isotwas_manu_scripts (no license), Zenodo 8322993 (other-open), Zenodo 8323001 (other-open)

Status: code verified, 164 files readable, 18 matches

[31854] doi:10.1038/s41588-023-01572-y [paper, repository]

A global view of aging and Alzheimer's pathogenesis-associated cell population dynamics and molecular signatures in human and mouse brains.

Journal: Nature genetics

Authors' code: bulik/ldsc (GPL-3.0), JunyueCaoLab/EasySci (MIT), Zenodo 8395492 (CC-BY-4.0)

Status: code verified, 67 files readable, 7 matches

[31855] doi:10.1038/s41592-023-02085-6 [paper, repository]

StayGold variants for molecular fusion and membrane-targeting applications.

Journal: Nature methods

Authors' code: dmsgrdm.riken.jp/egdq4 (no license)

Status: code verified

[31856] doi:10.1038/s41593-023-01500-7 [paper, repository]

Decoding motor plans using a closed-loop ultrasonic brain-machine interface.

Journal: Nature neuroscience

Authors' code: wsgriggs2/rt_fUS_BMI (GPL-3.0), Zenodo 8414598 (other-open)

Status: code verified, 134 files readable, 9 matches

[31857] doi:10.1038/s41597-023-02761-4 [paper, repository]

Genomics and transcriptomics of the Chinese mitten crabs (Eriocheir sinensis).

Journal: Scientific data

Authors' code: figshare 24475141 (CC-BY-4.0)

Status: code verified

[31858] doi:10.1038/s41598-023-48338-4 [paper, repository]

Enhancing robot evolution through Lamarckian principles.

Journal: Scientific reports

Authors' code: shorturl.at/epzgs (no license)

Status: code verified

[31859] doi:10.1038/s41598-023-48578-4 [paper, repository]

Investigation of an efficient multi-modal convolutional neural network for multiple sclerosis lesion detection.

Journal: Scientific reports

Authors' code: Nanex101195/Multibranch-2D-UNet (no license)

Status: code verified, 10 files readable, 2 matches

[31860] doi:10.1038/s41598-023-48632-1 [paper, repository]

Behavioral examination of the role of the primary visual cortex in the perceived size representation.

Journal: Scientific reports

Authors' code: OSF f9je3 (no license)

Status: code verified, 14 files readable, 1 match

[31861] doi:10.1073/pnas.2309166120 [paper, repository]

Neural tracking measures of speech intelligibility: Manipulating intelligibility while keeping acoustics unchanged.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.sbcc2frd6 (no license), Zenodo 5152554 (other-open), christianbrodbeck/eelbrain (BSD-3-Clause)

Status: code verified, 548 files readable, 12 matches

[31862] doi:10.1093/braincomms/fcad327 [paper, repository]

Impaired proactive cognitive control in Parkinson's disease.

Journal: Brain communications

Authors' code: OSF bsn8v (no license)

Status: code verified, 41 files readable, 8 matches

[31863] doi:10.1162/imag_a_00037 [paper, repository]

BrainAGE as a measure of maturation during early adolescence.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: LucyWhitmore/BrainAGE-Maturation (no license), GitDro/DevelopmentalBrainAge (MIT)

Status: code verified, 16 files readable, 5 matches

[31864] doi:10.1186/s12864-023-09836-x [paper, repository]

Range of chromatin accessibility configurations are permissive of GABAergic fate acquisition in developing mouse brain.

Journal: BMC genomics

Authors' code: ComputationalNeurogenetics/NeuronalFeatureSpace (no license)

Status: code verified, 28 files readable, 19 matches

[31865] doi:10.1186/s12974-023-02941-4 [paper, repository]

Single-cell RNA sequencing unveils Lrg1's role in cerebral ischemia‒reperfusion injury by modulating various cells.

Journal: Journal of neuroinflammation

Authors' code: swolock/scrublet (MIT), satijalab/seurat (other)

Status: code verified, 152 files readable, 8 matches

[31866] doi:10.1371/journal.pcbi.1011625 [paper, repository]

Metamodelling of a two-population spiking neural network.

Journal: PLoS computational biology

Authors' code: janskaar/Skaar_bioRxiv_506616v1 (no license)

Status: code verified, 38 files readable, 4 matches

[31867] doi:10.1371/journal.pcbi.1011667 [paper, repository]

Modeling the diverse effects of divisive normalization on noise correlations.

Journal: PLoS computational biology

Authors' code: CoenCagli-Lab/RoG2_Pairwise_Ratio_of_Gaussian_Variables (BSD-3-Clause)

Status: code verified, 42 files readable, 5 matches

[31868] doi:10.1371/journal.pone.0288663 [paper, repository]

CLAHE-CapsNet: Efficient retina optical coherence tomography classification using capsule networks with contrast limited adaptive histogram equalization.

Journal: PloS one

Authors' code: XifengGuo/CapsNet-Keras (MIT)

Status: code verified, 6 files readable, 3 matches

[31869] doi:10.1371/journal.pone.0294754 [paper, data]

Unmasking hidden risks: The surprising link between PDE5 inhibitors and seizure susceptibility.

Journal: PloS one

Status: data only, 1 dataset cited

[31870] doi:10.15252/emmm.202318199 [paper, data]

Patient- and xenograft-derived organoids recapitulate pediatric brain tumor features and patient treatments.

Journal: EMBO molecular medicine

Status: data only, 7 datasets cited

[31871] doi:10.3389/fncel.2023.1296455 [paper, data]

A view of the genetic and proteomic profile of extracellular matrix molecules in aging and stroke.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[31872] doi:10.3389/fpsyg.2023.1276237 [paper, repository]

Are acoustics enough? Semantic effects on auditory salience in natural scenes.

Journal: Frontiers in psychology

Authors' code: fschmid56/EfficientAT (MIT)

Status: code verified, 32 files readable, 4 matches

[31873] doi:10.3390/cells12232738 [paper, repository]

Human Embryonic Stem Cell-Derived Immature Midbrain Dopaminergic Neurons Transplanted in Parkinsonian Monkeys.

Journal: Cells

Authors' code: im-patch.com (no license)

Status: code found, still to be checked

[31874] doi:10.3390/ijms242316999 [paper, repository]

Rare A360T Mutation Alters GSK3β(Ser9) Binding in the Cytosolic Loop of Presenilin 1, Influencing β-Catenin Nuclear Localization and Pro-Death Gene Expression in Alzheimer's Disease Case.

Journal: International journal of molecular sciences

Authors' code: exomiser.github.io/exomiser (no license)

Status: dead link

[31875] doi:10.3390/jimaging9120265 [paper, data]

SCOLIONET: An Automated Scoliosis Cobb Angle Quantification Using Enhanced X-ray Images and Deep Learning Models.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[31876] doi:10.3390/s23239512 [paper, data]

Advancements in Home-Based Devices for Detecting Obstructive Sleep Apnea: A Comprehensive Study.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[31877] doi:10.7554/elife.87197 [paper, repository]

Human attention during goal-directed reading comprehension relies on task optimization.

Journal: eLife

Authors' code: jiajiezou/TOA (no license)

Status: code verified, 8 files readable, 5 matches

Wednesday, 29 November 2023 (32 papers)

[31878] doi:10.1016/j.crneur.2023.100118 [paper, repository]

A sparse code for natural sound context in auditory cortex.

Journal: Current research in neurobiology

Authors' code: LBHB/context_probe_analysis (other)

Status: code verified, 134 files readable, 25 matches

[31879] doi:10.1038/s41390-023-02903-9 [paper, repository]

Early, low-dose hydrocortisone and near-term brain connectivity in extremely preterm infants.

Journal: Pediatric research

Authors' code: vistalab/RTP-pipeline (no license), yeatmanlab/AFQ (gnu)

Status: code verified, 213 files readable, 3 matches

[31880] doi:10.1038/s41467-023-42595-7 [paper, repository]

CerS6-dependent ceramide synthesis in hypothalamic neurons promotes ER/mitochondrial stress and impairs glucose homeostasis in obese mice.

Journal: Nature communications

Authors' code: mrfeldmann/ceramide_paper (no license), lsteuernagel/ceramide_paper_hypomap (no license)

Status: code verified, 3 files readable

[31881] doi:10.1038/s41467-023-42819-w [paper, data]

INPP5D regulates inflammasome activation in human microglia.

Journal: Nature communications

Status: data only, 3 datasets cited

[31882] doi:10.1038/s41467-023-43497-4 [paper, data]

Brain methylome remodeling selectively regulates neuronal activity genes linking to emotional behaviors in mice exposed to maternal immune activation.

Journal: Nature communications

Status: code on request, 1 dataset cited

[31883] doi:10.1038/s41467-023-43519-1 [paper, repository]

HDAC8-mediated inhibition of EP300 drives a transcriptional state that increases melanoma brain metastasis.

Journal: Nature communications

Authors' code: Zenodo 8381172 (other-open)

Status: code verified, 9 files readable

[31884] doi:10.1038/s41586-023-06781-3 [paper, repository]

MSL2 ensures biallelic gene expression in mammals.

Journal: Nature

Authors' code: Akhtar-Lab-MPI-IE/MSL2_ensures_biallelic_gene_expression (no license)

Status: code verified, 5 files readable

[31885] doi:10.1038/s41586-023-06884-x [paper, repository]

Cellular development and evolution of the mammalian cerebellum.

Journal: Nature

Authors' code: linnarsson-lab/developing-human-brain (BSD-2-Clause), kaessmannlab/mammalian-cerebellum (no license)

Status: code verified, 76 files readable, 12 matches

[31886] doi:10.1038/s41598-023-47861-8 [paper, data]

Characterization of cannabinoid plasma concentration, maternal health, and cytokine levels in a rat model of prenatal Cannabis smoke exposure.

Journal: Scientific reports

Status: data only, 1 dataset cited

[31887] doi:10.1038/s41598-023-48548-w [paper, repository]

Elucidating salient site-specific functional connectivity features and site-invariant biomarkers in schizophrenia via deep neural networks.

Journal: Scientific reports

Authors' code: SCSE-Biomedical-Computing-Group/SHRED (no license)

Status: code verified, 21 files readable, 1 match

[31888] doi:10.1038/s42003-023-05588-2 [paper, repository]

Twenty-four-hour rhythmicities in disorders of consciousness are associated with a favourable outcome.

Journal: Communications biology

Authors' code: Lx37/data_viewver (no license)

Status: code verified, 10 files readable, 2 matches

[31889] doi:10.1073/pnas.2220743120 [paper, repository]

Beyond spiking networks: The computational advantages of dendritic amplification and input segregation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: cristianocapone/LTTB (CC-BY-4.0)

Status: code verified, 10 files readable

[31890] doi:10.1073/pnas.2314857120 [paper, data]

Expression of the vesicular GABA transporter within neuromedin S⁺ neurons sustains behavioral circadian rhythms.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[31891] doi:10.1098/rsbl.2023.0296 [paper, repository]

Brain size predicts bees' tolerance to urban environments.

Journal: Biology letters

Authors' code: doi:10.6084/m9.figshare.c.6935821 (no license), Zenodo 8328999 (MIT)

Status: code verified

[31892] doi:10.1098/rspb.2023.2092 [paper, repository]

Knockout of OR39 reveals redundancy in the olfactory pathway regulating the acquisition of host seeking in <i>Anopheles coluzzii</i>.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6935745 (no license)

Status: code found, still to be checked

[31893] doi:10.1126/sciadv.adh2726 [paper, repository]

<i>GTF2I</i> dosage regulates neuronal differentiation and social behavior in 7q11.23 neurodevelopmental disorders.

Journal: Science advances

Authors' code: cran.r-project.org/package=venndiagram (no license), Novartis/cellxgene-gateway (Apache-2.0)

Status: code verified, 45 files readable

[31894] doi:10.1126/sciadv.adj4897 [paper, repository]

Exponential history integration with diverse temporal scales in retrosplenial cortex supports hyperbolic behavior.

Journal: Science advances

Authors' code: Zenodo 8152662 (other-open), bpdanskin/bdanskin_sciadv_2023 (CC0-1.0)

Status: code verified, 16 files readable

[31895] doi:10.1186/s13024-023-00674-9 [paper, data]

Microglial function, INPP5D/SHIP1 signaling, and NLRP3 inflammasome activation: implications for Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 4 datasets cited

[31896] doi:10.1371/journal.pbio.3002343 [paper, data]

Optogenetic and chemogenetic approaches reveal differences in neuronal circuits that mediate initiation and maintenance of social interaction.

Journal: PLoS biology

Status: data only, 1 dataset cited

[31897] doi:10.1371/journal.pone.0294893 [paper, data]

Loss of Aspm causes increased apoptosis of developing neural cells during mouse cerebral corticogenesis.

Journal: PloS one

Status: data only, 13 datasets cited

[31898] doi:10.1371/journal.pone.0295061 [paper, data]

The genes significantly associated with an improved prognosis and long-term survival of glioblastoma.

Journal: PloS one

Status: data only, 4 datasets cited

[31899] doi:10.1371/journal.ppat.1011837 [paper, data]

Neuropilin-1 identifies a subset of highly activated CD8+ T cells during parasitic and viral infections.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[31900] doi:10.3389/fimmu.2023.1238684 [paper, data]

The unique immune ecosystems in pediatric brain tumors: integrating single-cell and bulk RNA-sequencing.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[31901] doi:10.3389/fnagi.2023.1290231 [paper, data]

Association between gene expression and altered resting-state functional networks in type 2 diabetes.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[31902] doi:10.3389/fpsyt.2023.1277097 [paper, data]

Effect of brain acidification on depression-related behaviors in diabetes mellitus.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[31903] doi:10.3389/frsip.2023.1195800 [paper, data]

Improved circuitry and post-processing for interleaved fast-scan cyclic voltammetry and electrophysiology measurements.

Journal: Frontiers in signal processing

Status: data only, 1 dataset cited

[31904] doi:10.3390/brainsci13121651 [paper, data]

Exploring Successful Cognitive Aging: Insights Regarding Brain Structure, Function, and Demographics.

Journal: Brain sciences

Status: data only, 1 dataset cited

[31905] doi:10.3390/brainsci13121656 [paper, repository]

Animacy Processing in Autism: Event-Related Potentials Reflect Social Functioning Skills.

Journal: Brain sciences

Authors' code: mathworks.com/products/matlab.html (no license)

Status: code found, still to be checked

[31906] doi:10.3390/e25121599 [paper, repository]

What Is in a Simplicial Complex? A Metaplex-Based Approach to Its Structure and Dynamics.

Journal: Entropy (Basel, Switzerland)

Authors' code: ManuM2B/Simplicial-Metaplexes (GPL-3.0)

Status: code verified, 8 files readable, 2 matches

[31907] doi:10.3390/ijms242316940 [paper, data]

Molecular Signatures Integral to Natural Reprogramming in the Pigment Epithelium Cells after Retinal Detachment in <i>Pleurodeles waltl</i>.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[31908] doi:10.3758/s13415-023-01138-9 [paper, repository]

Effects of task context on EEG correlates of mind-wandering.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF 6gtns (no license)

Status: code verified

[31909] doi:10.7554/elife.85012 [paper, repository]

Eelbrain, a Python toolkit for time-continuous analysis with temporal response functions.

Journal: eLife

Authors' code: Eelbrain/Alice (MIT)

Status: code verified, 27 files readable, 14 matches

Tuesday, 28 November 2023 (27 papers)

[31910] doi:10.1002/hbm.26546 [paper, repository]

Unraveling lexical semantics in the brain: Comparing internal, external, and hybrid language models.

Journal: Human brain mapping

Authors' code: BYVoid/OpenCC (Apache-2.0)

Status: code verified, 736 files readable, 1 match

[31911] doi:10.1007/s00125-023-06043-x [paper, data]

Disrupted hypothalamic transcriptomics and proteomics in a mouse model of type 2 diabetes exposed to recurrent hypoglycaemia.

Journal: Diabetologia

Status: data only, 1 dataset cited

[31912] doi:10.1007/s11571-023-10028-2 [paper]

ADHD/CD-NET: automated EEG-based characterization of ADHD and CD using explainable deep neural network technique.

Journal: Cognitive neurodynamics

Status: code on request

[31913] doi:10.1016/j.bioactmat.2023.11.013 [paper, data]

Local delivery of EGFR⁺NSCs-derived exosomes promotes neural regeneration post spinal cord injury via miR-34a-5p/HDAC6 pathway.

Journal: Bioactive materials

Status: data only, 1 dataset cited

[31914] doi:10.1016/j.celrep.2023.113509 [paper]

Aberrant axon initial segment plasticity and intrinsic excitability of ALS hiPSC motor neurons.

Journal: Cell reports

Status: code on request

[31915] doi:10.1016/j.isci.2023.108548 [paper, data]

Perceptual encoding of emotions in interactive bodily expressions.

Journal: iScience

Status: data only, 2 datasets cited

[31916] doi:10.1016/j.patter.2023.100888 [paper, repository]

Brain-inspired bodily self-perception model for robot rubber hand illusion.

Journal: Patterns (New York, N.Y.)

Authors' code: Brain-Cog-Lab/RHI (no license), Zenodo 8385850 (CC-BY-4.0)

Status: code verified, 25 files readable

[31917] doi:10.1038/s41467-023-42092-x [paper, repository]

Electrophysiological population dynamics reveal context dependencies during decision making in human frontal cortex.

Journal: Nature communications

Authors' code: fahsuanlin/fhlin_toolbox (no license), OSF f92yv (no license)

Status: code verified, 1,001 files readable, 9 matches

[31918] doi:10.1038/s41467-023-42658-9 [paper, repository]

Dbh&lt;sup&gt;+&lt;/sup&gt; catecholaminergic cardiomyocytes contribute to the structure and function of the cardiac conduction system in murine heart.

Journal: Nature communications

Authors' code: Lei-group/Dbh_paper (no license)

Status: code verified, 5 files readable, 7 matches

[31919] doi:10.1038/s41467-023-43567-7 [paper, repository]

The genetic relationships between brain structure and schizophrenia.

Journal: Nature communications

Authors' code: thewonlab/H-MAGMA (no license), evastauffer/schizophrenia-and-brain-structure (no license)

Status: code verified, 24 files readable, 12 matches

[31920] doi:10.1038/s41467-023-43575-7 [paper, repository]

Plasma proteomic profiles predict individual future health risk.

Journal: Nature communications

Authors' code: jasonHKU0907/FutureHealthProteomicPrediction (CC-BY-4.0)

Status: code verified, 85 files readable, 13 matches

[31921] doi:10.1038/s41467-023-43675-4 [paper]

Ultrasonic barrier-through imaging by Fabry-Perot resonance-tailoring panel.

Journal: Nature communications

Status: code on request

[31922] doi:10.1038/s41598-023-47702-8 [paper, repository]

Predicting stereotactic radiosurgery outcomes with multi-observer qualitative appearance labelling versus MRI radiomics.

Journal: Scientific reports

Authors' code: baines-imaging-research-laboratory/radiomics-for-srs-model-interpretability-code (no license)

Status: code verified, 2,000 files readable, 7 matches

[31923] doi:10.1038/s41598-023-47704-6 [paper]

Dopaminergic D2-like receptor stimulation affects attention on contextual information and modulates BOLD activation of extinction-related brain areas.

Journal: Scientific reports

Status: code on request

[31924] doi:10.1038/s42003-023-05582-8 [paper, repository]

Functional brain region-specific neural spheroids for modeling neurological diseases and therapeutics screening.

Journal: Communications biology

Authors' code: stardist/stardist-napari (BSD-3-Clause), carolinestrong/LC_Pro (no license)

Status: code verified, 15 files readable, 1 match

[31925] doi:10.1080/19490976.2023.2281360 [paper, repository]

Gut feelings: the relations between depression, anxiety, psychotropic drugs and the gut microbiome.

Journal: Gut microbes

Authors' code: GRONINGEN-MICROBIOME-CENTRE/DMP (no license)

Status: code verified, 42 files readable, 5 matches

[31926] doi:10.1080/24740527.2023.2264895 [paper, repository]

Cannabinoid CB1 Receptor Expression and Localization in the Dorsal Horn of Male and Female Rat and Human Spinal Cord.

Journal: Canadian journal of pain = Revue canadienne de la douleur

Authors' code: NewtontheNeuron/GScpter (no license)

Status: code verified, 11 files readable, 1 match

[31927] doi:10.1093/braincomms/fcad326 [paper, data]

Characterizing neurocognitive impairments in Parkinson's disease with mobile EEG when walking and stepping over obstacles.

Journal: Brain communications

Status: data only, 1 dataset cited

[31928] doi:10.1186/s12967-023-04740-0 [paper, data]

The promoting effect and mechanism of MAD2L2 on stemness maintenance and malignant progression in glioma.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[31929] doi:10.1186/s13064-023-00176-w [paper, data]

Molecular analyses of zebrafish V0v spinal interneurons and identification of transcriptional regulators downstream of Evx1 and Evx2 in these cells.

Journal: Neural development

Status: data only, 4 datasets cited

[31930] doi:10.1186/s40035-023-00386-6 [paper, data]

N6-methyladenosine-modified circRIMS2 mediates synaptic and memory impairments by activating GluN2B ubiquitination in Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[31931] doi:10.1186/s43556-023-00154-y [paper]

Osteopontin enhances the effect of treadmill training and promotes functional recovery after spinal cord injury.

Journal: Molecular biomedicine

Status: data only

[31932] doi:10.1371/journal.pbio.3002393 [paper, repository]

Cardiac activity impacts cortical motor excitability.

Journal: PLoS biology

Authors' code: Esra-Al/Cardiac_Motor_TMS_EEG (MIT), OSF eg8dz (no license)

Status: code verified, 53 files readable, 7 matches

[31933] doi:10.18632/aging.205250 [paper, data]

Effect of Nrf2 on brain injury induced by hydraulic shock via regulation of mitophagy and apoptosis.

Journal: Aging

Status: data only, 1 dataset cited

[31934] doi:10.18632/aging.205275 [paper, data]

Effects of paternal and chronological age on <i>BEGAIN</i> methylation and its possible role in autism.

Journal: Aging

Status: data only, 1 dataset cited

[31935] doi:10.3389/fnana.2023.1240545 [paper, repository]

Structural connectivity of cytoarchitectonically distinct human left temporal pole subregions: a diffusion MRI tractography study.

Journal: Frontiers in neuroanatomy

Authors' code: pnlbwh/ukftractography (other)

Status: code verified, 97 files readable, 2 matches

[31936] doi:10.3390/biomedicines11123168 [paper, data]

Fibronectin Type III Domain Containing 3B as a Potential Prognostic and Therapeutic Biomarker for Glioblastoma.

Journal: Biomedicines

Status: data only, 2 datasets cited

Monday, 27 November 2023 (28 papers)

[31937] doi:10.1016/j.jsps.2023.101888 [paper, data]

Novel ibuprofen prodrug: A possible promising agent for the management of complications of Alzheimer's disease.

Journal: Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society

Status: data only, 1 dataset cited

[31938] doi:10.1038/s41467-023-42173-x [paper, repository]

Complex 33-beam simulated galactic cosmic radiation exposure impacts cognitive function and prefrontal cortex neurotransmitter networks in male mice.

Journal: Nature communications

Authors' code: subhamoysgit/neurotransmitter_networks (MIT)

Status: code verified, 5 files readable, 2 matches

[31939] doi:10.1038/s41467-023-42497-8 [paper, data]

Synaptotagmin-7 outperforms synaptotagmin-1 to promote the formation of large, stable fusion pores via robust membrane penetration.

Journal: Nature communications

Status: data only, 2 datasets cited

[31940] doi:10.1038/s41467-023-43254-7 [paper, repository]

Cortical reactivation of spatial and non-spatial features coordinates with hippocampus to form a memory dialogue.

Journal: Nature communications

Authors' code: LelouchLamperougeVI/OfflineEnsembles (GPL-3.0), Zenodo 10030861 (CC-BY-4.0)

Status: code verified, 24 files readable, 2 matches

[31941] doi:10.1038/s41467-023-43456-z [paper, data]

OVOL2 sustains postnatal thymic epithelial cell identity.

Journal: Nature communications

Status: data only, 1 dataset cited

[31942] doi:10.1038/s41467-023-43627-y [paper, repository]

Resting-state global brain activity affects early β-amyloid accumulation in default mode network.

Journal: Nature communications

Authors' code: adni.loni.usc.edu/wp-content/uploads (no license), feng5132308003/Resting-state-global-brain-activity-affects-early--amyloid-accumulation-in-default-mode-network_NEW (no license)

Status: code verified, 24 files readable

[31943] doi:10.1038/s41592-023-02068-7 [paper, data]

Next-generation MRI scanner designed for ultra-high-resolution human brain imaging at 7 Tesla.

Journal: Nature methods

Status: data only, 2 datasets cited

[31944] doi:10.1038/s41598-023-47177-7 [paper, data]

A novel ensemble approach for estimating the competency of bank telemarketing.

Journal: Scientific reports

Status: data only, 1 dataset cited

[31945] doi:10.1038/s41598-023-47643-2 [paper, repository]

The role of multimodal cues in second language comprehension.

Journal: Scientific reports

Authors' code: OSF zk47n (no license)

Status: code verified, 1 file readable, 2 matches

[31946] doi:10.1038/s41598-023-47753-x [paper, repository]

In vivo marker of brainstem myelin is associated to quantitative sleep parameters in healthy young men.

Journal: Scientific reports

Authors' code: gitlab.uliege.be/cyclotronresearchcentre/public/fasst/brainstem_myelin_sleep (no license), gitlab.uliege.be/cyclotronresearchcentre/public/xxx (no license)

Status: code verified, 3 files readable, 8 matches

[31947] doi:10.1038/s42003-023-05565-9 [paper, repository]

Recurrent connectivity supports higher-level visual and semantic object representations in the brain.

Journal: Communications biology

Authors' code: OSF e2s59 (no license), AlexDClarke/MEG_RSA_VonSeth (no license)

Status: code verified, 41 files readable, 9 matches

[31948] doi:10.1038/s42003-023-05567-7 [paper, repository]

Novel sound exposure drives dynamic changes in auditory lateralization that are associated with perceptual learning in zebra finches.

Journal: Communications biology

Authors' code: Zenodo 10064040 (CC-BY-4.0)

Status: code verified, 11 files readable

[31949] doi:10.1073/pnas.2305773120 [paper, data]

High-throughput screening of glucocorticoid-induced enhancer activity reveals mechanisms of stress-related psychiatric disorders.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[31950] doi:10.1073/pnas.2305775120 [paper, repository]

Gene expression in the primate orbitofrontal cortex related to anxious temperament.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: tadesouaiaia/sage (no license)

Status: code verified, 26 files readable

[31951] doi:10.1073/pnas.2305776120 [paper, data]

Transcriptional signatures of early-life stress and antidepressant treatment efficacy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[31952] doi:10.1073/pnas.2310367120 [paper, repository]

Single-cell bisulfite-free 5mC and 5hmC sequencing with high sensitivity and scalability.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: yali-bai/CabernetMethylPip (no license)

Status: code verified, 18 files readable, 3 matches

[31953] doi:10.1080/19490976.2023.2276296 [paper, repository]

<i>Escherichia coli</i> triggers α-synuclein pathology in the <i>LRRK2</i> transgenic mouse model of PD.

Journal: Gut microbes

Authors' code: cran.r-project.org/web/packages (no license)

Status: code verified

[31954] doi:10.1080/19490976.2023.2283911 [paper, repository]

Nuanced contribution of gut microbiome in the early brain development of mice.

Journal: Gut microbes

Authors' code: gitlab.socsci.ru.nl/preclinical-neuroimaging/germfree (no license)

Status: code verified, 3 files readable

[31955] doi:10.1093/psyrad/kkad027 [paper, repository]

Connectome-based prediction of the severity of autism spectrum disorder.

Journal: Psychoradiology

Authors' code: Alainfuren/CPM_ASD (no license)

Status: code verified, 13 files readable, 2 matches

[31956] doi:10.1111/acel.14027 [paper, data]

SIRT2 transgenic over-expression does not impact lifespan in mice.

Journal: Aging cell

Status: data only, 1 dataset cited

[31957] doi:10.1111/bpa.13228 [paper, repository]

DistSNE: Distributed computing and online visualization of DNA methylation-based central nervous system tumor classification.

Journal: Brain pathology (Zurich, Switzerland)

Authors' code: hub.docker.com/repository/docker (no license)

Status: code verified

[31958] doi:10.1159/000535471 [paper, data]

Performance of a Diagnostic Model for the Presence of Unruptured Intracranial Aneurysms in the General Population.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[31959] doi:10.1177/11779322231210098 [paper, data]

A Comprehensive Bioinformatics Approach to Identify Molecular Signatures and Key Pathways for the Huntington Disease.

Journal: Bioinformatics and biology insights

Status: data only, 1 dataset cited

[31960] doi:10.1186/s13063-023-07788-x [paper]

Effects of a single dose of amisulpride on functional brain changes during reward- and motivation-related processing using task-based fMRI in healthy subjects and patients with major depressive disorder - study protocol for a randomized clinical trial.

Journal: Trials

Status: code on request

[31961] doi:10.1371/journal.pgen.1011045 [paper, repository]

Electrical synapse structure requires distinct isoforms of a postsynaptic scaffold.

Journal: PLoS genetics

Authors' code: adammillerlab.com/resources (no license)

Status: code verified

[31962] doi:10.1371/journal.pone.0294512 [paper, data]

Role of the volume conductor on simulations of local field potential recordings from deep brain stimulation electrodes.

Journal: PloS one

Status: data only, 1 dataset cited

[31963] doi:10.1523/eneuro.0311-23.2023 [paper, repository]

Socially Mediated Shift in Neural Circuits Activation Regulated by Synergistic Neuromodulatory Signaling.

Journal: eNeuro

Authors' code: modeldb:2015414 (no license)

Status: code verified

[31964] doi:10.3390/brainsci13121646 [paper, data]

Enhanced Dynamic Laterality Based on Functional Subnetworks in Patients with Bipolar Disorder.

Journal: Brain sciences

Status: data only, 1 dataset cited

Sunday, 26 November 2023 (1 paper)

[31965] doi:10.3390/brainsci13121639 [paper, data]

Development of Gamma Oscillation during Sentence Processing in Early Adolescence: Insights into the Maturation of Semantic Processing.

Journal: Brain sciences

Status: data only, 1 dataset cited

Saturday, 25 November 2023 (7 papers)

[31966] doi:10.1007/s00018-023-05018-w [paper, data]

Combined RNA interference and gene replacement therapy targeting MFN2 as proof of principle for the treatment of Charcot-Marie-Tooth type 2A.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[31967] doi:10.1016/j.isci.2023.108587 [paper]

Multimodal processing of noisy cues in bumblebees.

Journal: iScience

Status: code on request

[31968] doi:10.1016/j.neurobiolaging.2023.11.009 [paper, repository]

Does functional system segregation mediate the effects of lifestyle on cognition in older adults?

Journal: Neurobiology of aging

Authors' code: OSF bq3a7 (no license), camcan-archive.mrc-cbu.cam.ac.uk/dataaccess (no license)

Status: code verified, 7 files readable, 1 match

[31969] doi:10.1038/s41467-023-43120-6 [paper, repository]

Robust mapping of spatiotemporal trajectories and cell-cell interactions in healthy and diseased tissues.

Journal: Nature communications

Authors' code: caigroup/seqfish-plus (no license), LieberInstitute/HumanPilot (Artistic-2.0), Zenodo 8251742 (other-open), BiomedicalMachineLearning/stlearn_manuscript (no license), BiomedicalMachineLearning/stLearn (BSD-3-Clause), stlearn.readthedocs.io (no license), BiomedicalMachineLearning/stlearn_interactive (no license)

Status: code verified, 438 files readable, 40 matches

[31970] doi:10.1038/s41467-023-43473-y [paper, repository]

Real-data-driven real-time reconfigurable microwave reflective surface.

Journal: Nature communications

Authors' code: figshare 22908602 (CC-BY-4.0), ErdaWen/Real_data_driven_Metasurface (no license)

Status: code verified, 16 files readable

[31971] doi:10.1038/s41467-023-43509-3 [paper, repository]

Diversity of cortical activity changes beyond depression during Spreading Depolarizations.

Journal: Nature communications

Authors' code: Zenodo 10066378 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[31972] doi:10.1097/wnr.0000000000001977 [paper, repository]

In-depth analyses of lncRNA and circRNA expression in the hippocampus of LPS-induced AD mice by Byu d Mar 25.

Journal: Neuroreport

Authors' code: tderrien/FEELnc (GPL-3.0)

Status: code verified, 10 files readable

Friday, 24 November 2023 (17 papers)

[31973] doi:10.1016/j.isci.2023.108554 [paper, repository]

Numerical investigation of a graphene-on-semiconductor device for optical monitoring of cell electrophysiology.

Journal: iScience

Authors' code: Zenodo 8422649 (CC-BY-4.0)

Status: code verified, 12 files readable, 3 matches

[31974] doi:10.1016/j.neuroimage.2023.120427 [paper, repository]

Targeting motor cortex high-excitability states defined by functional connectivity with real-time EEG-TMS.

Journal: NeuroImage

Authors' code: connect2brain/MoCsEFC (MIT)

Status: code verified, 31 files readable, 12 matches

[31975] doi:10.1016/j.omtn.2023.102084 [paper]

Neuronal-type-specific epigenome editing to decrease <i>SNCA</i> expression: Implications for precision medicine in synucleinopathies.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[31976] doi:10.1016/j.xhgg.2023.100257 [paper, repository]

CRISPR-Cas9-generated PTCHD1 2489T&gt;G stem cells recapitulate patient phenotype when undergoing neural induction.

Journal: HGG advances

Authors' code: ENCODE-DCC/rna-seq-pipeline (MIT), ENCODE-DCC/caper (MIT)

Status: code verified, 80 files readable

[31977] doi:10.1016/j.xpro.2023.102736 [paper, repository]

Protocol for mapping the metabolome and lipidome of medulloblastoma cells using liquid chromatography-mass spectrometry.

Journal: STAR protocols

Authors' code: Zenodo 8364217 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[31978] doi:10.1038/s41467-023-43222-1 [paper, data]

Autophagy drives the conversion of developmental neural stem cells to the adult quiescent state.

Journal: Nature communications

Status: data only, 7 datasets cited

[31979] doi:10.1038/s41467-023-43520-8 [paper, repository]

Deep topographic proteomics of a human brain tumour.

Journal: Nature communications

Authors' code: Zenodo 8341909 (MIT), pdcharles/spatial-proteomics-anf (MIT)

Status: code verified, 5 files readable, 4 matches

[31980] doi:10.1038/s41467-023-43566-8 [paper, data]

Different spectral sensitivities of ON- and OFF-motion pathways enhance the detection of approaching color objects in Drosophila.

Journal: Nature communications

Status: data only, 1 dataset cited

[31981] doi:10.1038/s41598-023-47935-7 [paper, repository]

Accurate personalized survival prediction for amyotrophic lateral sclerosis patients.

Journal: Scientific reports

Authors' code: kuan0911/ALS-survival-prediction-ISD (no license)

Status: code verified, 31 files readable, 5 matches

[31982] doi:10.1038/s41598-023-47954-4 [paper, repository]

Effective connectivity in a duration selective cortico-cerebellar network.

Journal: Scientific reports

Authors' code: OSF jderp (no license)

Status: code verified, 9 files readable

[31983] doi:10.1126/sciadv.adf2772 [paper, data]

Neurodevelopmental defects in human cortical organoids with <i>N</i>-acetylneuraminic acid synthase mutation.

Journal: Science advances

Status: data only, 1 dataset cited

[31984] doi:10.1186/s12883-023-03468-0 [paper, repository]

Parkinson's disease tremor prediction using EEG data analysis-A preliminary and feasibility study.

Journal: BMC neurology

Authors' code: WITMOTION (no license)

Status: code verified

[31985] doi:10.3389/fncom.2023.1268116 [paper, repository]

Bio-inspired circular latent spaces to estimate objects' rotations.

Journal: Frontiers in computational neuroscience

Authors' code: 3lis/neuro-circ-latent (no license)

Status: code verified, 13 files readable, 5 matches

[31986] doi:10.3389/fnins.2023.1244675 [paper, data]

Impact of spiking neurons leakages and network recurrences on event-based spatio-temporal pattern recognition.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[31987] doi:10.3390/bioengineering10121352 [paper, repository]

Self-Regulation of Attention in Children in a Virtual Classroom Environment: A Feasibility Study.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: ebadier/NeurospecTriggerBox-Unity (MIT)

Status: empty repository, 2 files readable

[31988] doi: [paper, repository]

Prenatal experience with language shapes the brain

Journal: Science advances

Authors' code: Zenodo 8358768 (other-open), gbarzon/mariani_et_al_2023_prenatal (no license)

Status: code verified, 14 files readable, 2 matches

[31989] doi: [paper, data]

MicroRNA-92a–CPEB3 axis protects neurons against inflammatory neurodegeneration

Journal: Science advances

Status: data only, 1 dataset cited

Thursday, 23 November 2023 (32 papers)

[31990] doi:10.1007/s00221-023-06738-y [paper, repository]

Reducing alertness does not affect line bisection bias in neurotypical participants.

Journal: Experimental brain research

Authors' code: OSF x9mky (no license)

Status: code verified

[31991] doi:10.1007/s00415-023-12086-2 [paper, data]

Macro- and micro-structural insights into primary dystonia: a UK Biobank study.

Journal: Journal of neurology

Status: data only, 2 datasets cited

[31992] doi:10.1007/s10548-023-01018-y [paper, repository]

Evoked EEG Responses to TMS Targeting Regions Outside the Primary Motor Cortex and Their Test-Retest Reliability.

Journal: Brain topography

Authors' code: Song-Yufei/tms-eeg-using-optimized-sham-outside-M1 (no license)

Status: code verified, 39 files readable, 11 matches

[31993] doi:10.1016/j.heliyon.2023.e22647 [paper, repository]

A three-dimensional deep learning model for inter-site harmonization of structural MR images of the brain: Extensive validation with a multicenter dataset.

Journal: Heliyon

Authors' code: RocaV/3d_cyclegan_mri_harmonization (no license)

Status: code verified, 12 files readable, 1 match

[31994] doi:10.1016/j.isci.2023.108518 [paper]

C1q is essential for myelination in the central nervous system (CNS).

Journal: iScience

Status: code on request

[31995] doi:10.1016/j.isci.2023.108525 [paper, repository]

NOCICEPTRA2.0 - A comprehensive ncRNA atlas of human native and iPSC-derived sensory neurons.

Journal: iScience

Authors' code: MUIphysiologie/NOCICEPTRA2.0 (no license), Zenodo 10117927 (CC-BY-4.0), Zenodo 10117925 (CC-BY-4.0), nociceptra.streamlit.app (no license), mouzkolit/nociceptra2.0 (no license)

Status: code verified, 16 files readable, 14 matches

[31996] doi:10.1016/j.isci.2023.108527 [paper]

Cerebrospinal fluid exploratory proteomics and ketamine metabolite pharmacokinetics in human volunteers after ketamine infusion.

Journal: iScience

Status: code on request

[31997] doi:10.1016/j.isci.2023.108536 [paper, repository]

Optogenetic activation of the ventral tegmental area-hippocampal pathway facilitates rapid adaptation to changes in spatial goals.

Journal: iScience

Authors' code: Zenodo 8409826 (other-open), djamesbarker/pMAT (GPL-3.0), takahashilab/vtahp2 (no license)

Status: code verified, 89 files readable, 2 matches

[31998] doi:10.1016/j.isci.2023.108544 [paper, repository]

Maf1 controls retinal neuron number by both RNA Pol III- and Pol II-dependent mechanisms.

Journal: iScience

Authors' code: AllonKleinLab/scrublet (MIT)

Status: code verified, 16 files readable

[31999] doi:10.1016/j.nicl.2023.103547 [paper, repository]

Spatial distributions of white matter hyperintensities on brain MRI: A pooled analysis of individual participant data from 11 memory clinic cohorts.

Journal: NeuroImage. Clinical

Authors' code: Meta-VCI-Map/WMH_distribution_memory_clinic (MIT)

Status: code verified, 4 files readable, 2 matches

[32000] doi:10.1038/s41467-023-42862-7 [paper, repository]

A reversible state of hypometabolism in a human cellular model of sporadic Parkinson's disease.

Journal: Nature communications

Authors' code: sebischmidt/A-reversible-state-of-hypometabolism-in-a-cellular-model-of-sporadic-Parkinson-s-disease (no license), Zenodo 8399342 (other-open)

Status: code verified, 17 files readable, 17 matches

[32001] doi:10.1038/s41467-023-43255-6 [paper, repository]

A synaptic corollary discharge signal suppresses midbrain visual processing during saccade-like locomotion.

Journal: Nature communications

Authors' code: bollmannlab/Corollary_Discharge (CC-BY-NC-SA-4.0)

Status: code verified, 3 files readable, 2 matches

[32002] doi:10.1038/s41540-023-00321-5 [paper, repository]

Few-shot prediction of amyloid β accumulation from mainly unpaired data on biomarker candidates.

Journal: NPJ systems biology and applications

Authors' code: yadapo/PredictionAbeta (MIT)

Status: code verified, 11 files readable, 6 matches

[32003] doi:10.1038/s41556-023-01296-5 [paper, repository]

Joint epigenome profiling reveals cell-type-specific gene regulatory programmes in human cortical organoids.

Journal: Nature cell biology

Authors' code: dekkerlab/cworld-dekker (Apache-2.0), BonevLab/NoackVangelisti_2023 (MIT), tanaylab/shaman (no license)

Status: code verified, 214 files readable, 18 matches

[32004] doi:10.1038/s41593-023-01501-6 [paper, repository]

A global multicohort study to map subcortical brain development and cognition in infancy and early childhood.

Journal: Nature neuroscience

Authors' code: knickmeyer-lab/ORIGINs_ICV-and-Subcortical-volume-development-in-early-childhood (no license)

Status: empty repository, 1 file readable

[32005] doi:10.1038/s41598-023-47568-w [paper, data]

A machine learning method to process voice samples for identification of Parkinson's disease.

Journal: Scientific reports

Status: data only, 2 datasets cited

[32006] doi:10.1038/s41684-023-01289-9 [paper, repository]

The PREMISE database of 20 Macaca fascicularis PET/MRI brain images available for research.

Journal: Lab animal

Authors' code: gitlab.in2p3.fr/cermep/cermep-bids-retro (MIT)

Status: code verified, 12 files readable, 7 matches

[32007] doi:10.1162/imag_a_00033 [paper, repository]

Flicker light stimulation induces thalamocortical hyperconnectivity with LGN and higher-order thalamic nuclei.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ioannaamaya/FLS-rsfMRI (no license)

Status: code verified, 27 files readable, 4 matches

[32008] doi:10.1186/s12984-023-01283-9 [paper, repository]

Immersive virtual reality gameplay detects visuospatial atypicality, including unilateral spatial neglect, following brain injury: a pilot study.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: OSF staj7 (no license)

Status: empty repository

[32009] doi:10.3389/fimmu.2023.1249405 [paper, data]

The transcriptomics profiling of blood CD4 and CD8 T-cells in narcolepsy type I.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[32010] doi:10.3389/fncel.2023.1259712 [paper, data]

Functional maturation of human iPSC-derived pyramidal neurons <i>in vivo</i> is dependent on proximity with the host tissue.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[32011] doi:10.3389/fncel.2023.1272391 [paper, repository]

Evaluation of gliovascular functions of AQP4 readthrough isoforms.

Journal: Frontiers in cellular neuroscience

Authors' code: jdlabteam/aqp4x_characterization (no license)

Status: code verified, 21 files readable, 4 matches

[32012] doi:10.3389/fnins.2023.1282232 [paper, data]

Topological properties and connectivity patterns in brain networks of patients with refractory epilepsy combined with intracranial electrical stimulation.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[32013] doi:10.3389/fnins.2023.1283491 [paper, repository]

Decoding executed and imagined grasping movements from distributed non-motor brain areas using a Riemannian decoder.

Journal: Frontiers in neuroscience

Authors' code: mottenhoff/distributed_motor_decoding (no license)

Status: code verified, 13 files readable, 3 matches

[32014] doi:10.3389/fnmol.2023.1290556 [paper, data]

Secreted protein acidic and rich in cysteine (SPARC) induces apoptosis of human brain vascular smooth muscle cells through regulating HK2 in intracranial aneurysm.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[32015] doi:10.3389/fnrgo.2023.1233722 [paper, repository]

Assessment of mental workload across cognitive tasks using a passive brain-computer interface based on mean negative theta-band amplitudes.

Journal: Frontiers in neuroergonomics

Authors' code: Zenodo 10077137 (CC-BY-4.0), Zenodo 10077136 (CC-BY-4.0)

Status: code verified

[32016] doi:10.3389/fnrgo.2023.1274730 [paper, repository]

Combining brain-computer interfaces with deep reinforcement learning for robot training: a feasibility study in a simulation environment.

Journal: Frontiers in neuroergonomics

Authors' code: bulletphysics/bullet3 (other), mrsyee/pg-is-all-you-need (MIT)

Status: code verified, 1,706 files readable, 2 matches

[32017] doi:10.3390/bioengineering10121350 [paper, data]

Open Hardware Implementation of Real-Time Phase and Amplitude Estimation for Neurophysiologic Signals.

Journal: Bioengineering (Basel, Switzerland)

Status: code on request, 1 dataset cited

[32018] doi:10.3390/biom13121696 [paper, data]

Efficacy of HDAC Inhibitors in Driving Peroxisomal β-Oxidation and Immune Responses in Human Macrophages: Implications for Neuroinflammatory Disorders.

Journal: Biomolecules

Status: data only, 1 dataset cited

[32019] doi:10.3390/s23239352 [paper, repository]

EEG Amplitude Modulation Analysis across Mental Tasks: Towards Improved Active BCIs.

Journal: Sensors (Basel, Switzerland)

Authors' code: OlivierRS/EEG-Preprocessing-with-ADJUST (no license)

Status: code verified, 4 files readable, 1 match

[32020] doi:10.7554/elife.86037 [paper, data]

Cross-movie prediction of individualized functional topography.

Journal: eLife

Status: data only, 1 dataset cited

[32021] doi:10.7717/peerj-cs.1706 [paper, repository]

AMSF: attention-based multi-view slice fusion for early diagnosis of Alzheimer's disease.

Journal: PeerJ. Computer science

Authors' code: supp:PMC10703093/peerj-cs-09-1706-s003.zip (no license)

Status: code verified, 1 file readable

Wednesday, 22 November 2023 (32 papers, 11 on this page)

[32022] doi:10.1016/j.celrep.2023.113438 [paper, repository]

Bodies in motion: Unraveling the distinct roles of motion and shape in dynamic body responses in the temporal cortex.

Journal: Cell reports

Authors' code: OSF jsm5z (no license), RajaniRaman/dynamic_body (no license), facebookresearch/slowfast (Apache-2.0)

Status: code verified, 90 files readable, 2 matches

[32023] doi:10.1016/j.celrep.2023.113482 [paper, repository]

Visual experience induces 4-8 Hz synchrony between V1 and higher-order visual areas.

Journal: Cell reports

Authors' code: Zenodo 10067600 (CC-BY-4.0), Zenodo 10070360 (CC-BY-4.0), yididiyan/neural-connectivity (no license), chubykin/v1-hva-oscillations (no license)

Status: code verified, 69 files readable, 6 matches

[32024] doi:10.1016/j.celrep.2023.113487 [paper, repository]

Development of white matter fiber covariance networks supports executive function in youth.

Journal: Cell reports

Authors' code: Zenodo 10064924 (CC-BY-4.0)

Status: code verified, 31 files readable, 16 matches

[32025] doi:10.1016/j.heliyon.2023.e22657 [paper, repository]

Exploring the core network of the structural covariance network in childhood absence epilepsy.

Journal: Heliyon

Authors' code: GSDrenthen/SCN (no license)

Status: code verified, 4 files readable

[32026] doi:10.1016/j.isci.2023.108501 [paper, repository]

Bridging the gap between EEG and DCNNs reveals a fatigue mechanism of facial repetition suppression.

Journal: iScience

Authors' code: OSF unhzm (no license)

Status: code verified

[32027] doi:10.1016/j.isci.2023.108545 [paper]

Golgi-to-ER retrograde transport prevents premature differentiation of <i>Drosophila</i> type II neuroblasts via Notch-signal-sending daughter cells.

Journal: iScience

Status: code on request

[32028] doi:10.1016/j.stemcr.2023.10.019 [paper]

Programming of neural progenitors of the adult subependymal zone towards a glutamatergic neuron lineage by neurogenin 2.

Journal: Stem cell reports

Status: code on request

[32029] doi:10.1016/j.stemcr.2023.10.020 [paper, repository]

Deriving early single-rosette brain organoids from human pluripotent stem cells.

Journal: Stem cell reports

Authors' code: qianqianshao/SOSRS (no license)

Status: code verified, 13 files readable, 3 matches

[32030] doi:10.1038/s41467-023-43251-w [paper, repository]

Motion direction is represented as a bimodal probability distribution in the human visual cortex.

Journal: Nature communications

Authors' code: jeheelab (no license), jeheelab/TAFKAP (GPL-3.0)

Status: code verified, 13 files readable, 5 matches

[32031] doi:10.1038/s41467-023-43535-1 [paper, repository]

Fear extinction is regulated by the activity of long noncoding RNAs at the synapse.

Journal: Nature communications

Authors' code: Qiongyi/lncRNA_nucleus_synapse (no license)

Status: code verified, 7 files readable, 1 match

[32032] doi:10.1038/s41467-023-43568-6 [paper, repository]

Single-cell epigenomics and spatiotemporal transcriptomics reveal human cerebellar development.

Journal: Nature communications

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

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