Every paper, by date: page 145

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 145 of 200: 13 November 2023 to 2 November 2023.

Monday, 13 November 2023 (25 papers, 3 on this page)

[32257] doi:10.3390/brainsci13111587 [paper, data]

Multilingual Language Diversity Protects Native Language Production under Different Control Demands.

Journal: Brain sciences

Status: data only, 1 dataset cited

[32258] doi:10.7554/elife.88404 [paper, repository]

Evaluation of surface-based hippocampal registration using ground-truth subfield definitions.

Journal: eLife

Authors' code: khanlab/hippunfold (MIT), Zenodo 7757416 (CC-BY-4.0)

Status: code verified, 69 files readable

[32259] doi:10.7717/peerj.16412 [paper, data]

A pyroptosis gene-based prognostic model for predicting survival in low-grade glioma.

Journal: PeerJ

Status: data only, 1 dataset cited

Saturday, 11 November 2023 (13 papers)

[32260] doi:10.1016/j.celrep.2023.113423 [paper, data]

Jedi-1/MEGF12-mediated phagocytosis controls the pro-neurogenic properties of microglia in the ventricular-subventricular zone.

Journal: Cell reports

Status: code on request, 1 dataset cited

[32261] doi:10.1016/j.celrep.2023.113435 [paper]

Spiny projection neurons exhibit transcriptional signatures within subregions of the dorsal striatum.

Journal: Cell reports

Status: code on request

[32262] doi:10.1016/j.dcn.2023.101324 [paper, repository]

From mother to child: How intergenerational transfer is reflected in similarity of corticolimbic brain structure and mental health.

Journal: Developmental cognitive neuroscience

Authors' code: mathworks.com/products/matlab.html (no license)

Status: code found, still to be checked

[32263] doi:10.1016/j.mcpro.2023.100678 [paper, repository]

Identification of State-Specific Proteomic and Transcriptomic Signatures of Microglia-Derived Extracellular Vesicles.

Journal: Molecular & cellular proteomics : MCP

Authors' code: adityanatu1/proteomic-and-transcriptomic-signatures-of-microglia-derived-extracellular-vesicles- (MIT)

Status: code verified, 30 files readable, 3 matches

[32264] doi:10.1038/s41398-023-02642-9 [paper, repository]

Mindfulness-based therapy improves brain functional network reconfiguration efficiency.

Journal: Translational psychiatry

Authors' code: hzlab/2022_Yue_Mindfulness_Reconfiguration_TransPsy (no license)

Status: code verified, 6 files readable, 1 match

[32265] doi:10.1038/s41398-023-02644-7 [paper, repository]

A brain model of altered self-appraisal in social anxiety disorder.

Journal: Translational psychiatry

Authors' code: alecJamieson/SAD_DCM_paper (no license)

Status: code verified, 1 file readable

[32266] doi:10.1038/s41419-023-06261-6 [paper]

Integration of FUNDC1-associated mitochondrial protein import and mitochondrial quality control contributes to TDP-43 degradation.

Journal: Cell death & disease

Status: data only

[32267] doi:10.1038/s41467-023-43081-w [paper, repository]

Emergence of task-related spatiotemporal population dynamics in transplanted neurons.

Journal: Nature communications

Authors' code: gangulylab/CellTPCode (no license)

Status: code verified, 47 files readable, 5 matches

[32268] doi:10.1038/s41467-023-43165-7 [paper, repository]

Virtual lesions in MEG reveal increasing vulnerability of the language network from early childhood through adolescence.

Journal: Nature communications

Authors' code: willi3by/MEG_FDA (no license)

Status: code verified, 5 files readable, 5 matches

[32269] doi:10.1038/s41598-023-46917-z [paper, repository]

Temporal hierarchy of observed goal-directed actions.

Journal: Scientific reports

Authors' code: ShaharAb/Temporal_Hierarchy_study (no license)

Status: code verified, 14 files readable

[32270] doi:10.1186/s13293-023-00557-0 [paper, data]

Sex and age differences in social and cognitive function in offspring exposed to late gestational hypoxia.

Journal: Biology of sex differences

Status: data only, 1 dataset cited

[32271] doi:10.3390/ijms242216208 [paper, repository]

Comparison between [⁶⁸Ga]Ga-PSMA-617 and [¹⁸F]FET PET as Imaging Biomarkers in Adult Recurrent Glioblastoma.

Journal: International journal of molecular sciences

Authors' code: cbri92/Genesis-GBM-001 (MIT), Zenodo 8124207 (other-open)

Status: code verified, 37 files readable, 10 matches

[32272] doi:10.3390/ijms242216218 [paper, data]

The Exposure to Lead (Pb) Exacerbates Immunological Abnormalities in BTBR T⁺ Itpr^3tf/J Mice through the Regulation of Signaling Pathways Relevant to T Cells.

Journal: International journal of molecular sciences

Status: data only, 4 datasets cited

Friday, 10 November 2023 (26 papers)

[32273] doi:10.1002/advs.202303402 [paper, data]

Bone Marrow-Derived GCA⁺ Immune Cells Drive Alzheimer's Disease Progression.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[32274] doi:10.1007/s00406-023-01708-5 [paper, data]

Cortical excitation/inhibition ratios in patients with major depression treated with electroconvulsive therapy: an EEG analysis.

Journal: European archives of psychiatry and clinical neuroscience

Status: data only, 1 dataset cited

[32275] doi:10.1007/s11060-023-04478-1 [paper]

Safety of microneurosurgical interventions for superficial and deep-seated brain metastases: single-center cohort study of 637 consecutive cases.

Journal: Journal of neuro-oncology

Status: code on request

[32276] doi:10.1016/j.celrep.2023.113405 [paper, repository]

Brainstem fMRI signaling of surprise across different types of deviant stimuli.

Journal: Cell reports

Authors' code: Zenodo 8414347 (CC-BY-4.0)

Status: code verified, 31 files readable, 17 matches

[32277] doi:10.1016/j.dcn.2023.101323 [paper, repository]

Differential functional reorganization of ventral and dorsal visual pathways following childhood hemispherectomy.

Journal: Developmental cognitive neuroscience

Authors' code: vayzenb/ventral-dorsal-reorganization (no license)

Status: code verified, 24 files readable, 1 match

[32278] doi:10.1016/j.isci.2023.108426 [paper]

Microstructural dynamics of motor learning and sleep-dependent consolidation: A diffusion imaging study.

Journal: iScience

Status: code on request

[32279] doi:10.1038/s41467-023-43124-2 [paper, repository]

Combinatorial quantification of distinct neural projections from retrograde tracing.

Journal: Nature communications

Authors' code: Zenodo 8416755 (other-open), sivaven/combinatorialprojectomics (no license)

Status: code verified, 86 files readable

[32280] doi:10.1038/s41467-023-43130-4 [paper, repository]

Tau forms synaptic nano-biomolecular condensates controlling the dynamic clustering of recycling synaptic vesicles.

Journal: Nature communications

Authors' code: tristanwallis/smlm_clustering (no license), Zenodo 7847776 (other-open)

Status: code verified, 13 files readable, 1 match

[32281] doi:10.1038/s41467-023-43140-2 [paper, repository]

Microstimulation of human somatosensory cortex evokes task-dependent, spatially patterned responses in motor cortex.

Journal: Nature communications

Authors' code: Zenodo 8408314 (other-open), corticalbionics/icmsconnectivity (GPL-3.0)

Status: code verified, 151 files readable, 6 matches

[32282] doi:10.1038/s41467-023-43147-9 [paper, repository]

Enhancement and contextual modulation of visuospatial processing by thalamocollicular projections from ventral lateral geniculate nucleus.

Journal: Nature communications

Authors' code: GuangWei-Zhang/TraCon-Toolbox (MIT), Zenodo 10019073 (CC-BY-4.0)

Status: code verified, 88 files readable, 2 matches

[32283] doi:10.1038/s41598-023-41922-8 [paper, repository]

Breakdown of category-specific word representations in a brain-constrained neurocomputational model of semantic dementia.

Journal: Scientific reports

Authors' code: tinyurl.com/sdneurosim (no license)

Status: code verified

[32284] doi:10.1038/s41598-023-46600-3 [paper]

Histology-informed multiscale modeling of human brain white matter.

Journal: Scientific reports

Status: code on request

[32285] doi:10.1038/s42003-023-05441-6 [paper]

Deep learning-based image analysis identifies a DAT-negative subpopulation of dopaminergic neurons in the lateral Substantia nigra.

Journal: Communications biology

Status: code on request

[32286] doi:10.1073/pnas.2220300120 [paper, data]

Restoring neuronal iron homeostasis revitalizes neurogenesis after spinal cord injury.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[32287] doi:10.1080/09602011.2023.2275825 [paper, repository]

Using recognition testing to support semantic learning in developmental amnesia.

Journal: Neuropsychological rehabilitation

Authors' code: OSF ks3mq (no license)

Status: code verified, 1 file readable

[32288] doi:10.1093/braincomms/fcad310 [paper, data]

Impaired discourse content in aphasia is associated with frontal white matter damage.

Journal: Brain communications

Status: data only, 1 dataset cited

[32289] doi:10.1111/cns.14468 [paper, data]

Electroacupuncture promotes the repair of the damaged spinal cord in mice by mediating neurocan-perineuronal net.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[32290] doi:10.1126/sciadv.adf7997 [paper, data]

CLIP-Seq analysis enables the design of protective ribosomal RNA bait oligonucleotides against <i>C9ORF72</i> ALS/FTD poly-GR pathophysiology.

Journal: Science advances

Status: data only, 1 dataset cited

[32291] doi:10.1126/sciadv.adi2321 [paper, repository]

Alpha-frequency feedback to early visual cortex orchestrates coherent naturalistic vision.

Journal: Science advances

Authors' code: Zenodo 8369136 (CC-BY-4.0)

Status: code verified, 16 files readable, 7 matches

[32292] doi:10.1371/journal.pcbi.1011078 [paper, repository]

Architecture of the brain's visual system enhances network stability and performance through layers, delays, and feedback.

Journal: PLoS computational biology

Authors' code: OsvaVelarde (no license)

Status: code verified

[32293] doi:10.1371/journal.pgen.1011030 [paper, data]

RET enhancer haplotype-dependent remodeling of the human fetal gut development program.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[32294] doi:10.1371/journal.pone.0284836 [paper, repository]

Neural signatures of automatic repetition detection in temporally regular and jittered acoustic sequences.

Journal: PloS one

Authors' code: OSF xn9t4 (no license)

Status: code verified, 3 files readable

[32295] doi:10.3389/fnhum.2023.1288438 [paper, data]

Influence of spatial frequency in visual stimuli for cVEP-based BCIs: evaluation of performance and user experience.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[32296] doi:10.3390/md21110588 [paper, repository]

Transcriptomic Profiling of Tetrodotoxin-Induced Neurotoxicity in Human Cerebral Organoids.

Journal: Marine drugs

Authors' code: tanghaibao/Goatools (BSD-2-Clause)

Status: code verified, 136 files readable, 4 matches

[32297] doi:10.3390/s23229101 [paper, data]

Multimodal Gait Abnormality Recognition Using a Convolutional Neural Network-Bidirectional Long Short-Term Memory (CNN-BiLSTM) Network Based on Multi-Sensor Data Fusion.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[32298] doi:10.7554/elife.87772 [paper, repository]

scMultiome analysis identifies embryonic hindbrain progenitors with mixed rhombomere identities.

Journal: eLife

Authors' code: zfin.org (no license), rebeccaorourke-cu/sagerstrom_zebrafish_hindbrain (no license)

Status: code verified, 41 files readable, 5 matches

Thursday, 9 November 2023 (33 papers)

[32299] doi:10.1016/j.nicl.2023.103539 [paper, repository]

Testing the triple network model of psychopathology in a transdiagnostic neurodevelopmental cohort.

Journal: NeuroImage. Clinical

Authors' code: OSF 7mptz (no license)

Status: code verified, 5 files readable, 4 matches

[32300] doi:10.1016/j.xpro.2023.102681 [paper, repository]

Protocol for tissue processing and paraffin embedding of mouse brains following ex vivo MRI.

Journal: STAR protocols

Authors' code: git.fmrib.ox.ac.uk/ihuszar/tirl (no license), git.fmrib.ox.ac.uk/spet4877/ihcpy (no license)

Status: code found, still to be checked

[32301] doi:10.1016/j.xpro.2023.102707 [paper]

A pipeline for STED super-resolution imaging and Imaris analysis of nanoscale synapse organization in mouse cortical brain slices.

Journal: STAR protocols

Status: code on request

[32302] doi:10.1038/s41467-023-42501-1 [paper, repository]

Automated temporalis muscle quantification and growth charts for children through adulthood.

Journal: Nature communications

Authors' code: Zenodo 8428986 (other-open), itmt-icsa.streamlit.app (no license), aim-kannlab/itmt (CC-BY-NC-ND-4.0)

Status: code verified, 104 files readable, 9 matches

[32303] doi:10.1038/s41467-023-42956-2 [paper, data]

Cryo-EM structure of TMEM63C suggests it functions as a monomer.

Journal: Nature communications

Status: data only, 1 dataset cited

[32304] doi:10.1038/s41467-023-43022-7 [paper, data]

Epigenetic regulation of beta-endorphin synthesis in hypothalamic arcuate nucleus neurons modulates neuropathic pain in a rodent pain model.

Journal: Nature communications

Status: data only, 1 dataset cited

[32305] doi:10.1038/s41467-023-43066-9 [paper]

Nigrostriatal dopamine modulates the striatal-amygdala pathway in auditory fear conditioning.

Journal: Nature communications

Status: code on request

[32306] doi:10.1038/s41467-023-43142-0 [paper, data]

Functional alterations of the prefrontal circuit underlying cognitive aging in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[32307] doi:10.1038/s41514-023-00122-4 [paper, data]

Low circulating adropin levels in late-middle aged African Americans with poor cognitive performance.

Journal: npj aging

Status: data only, 1 dataset cited

[32308] doi:10.1038/s41593-023-01471-9 [paper, repository]

Topological analysis of sharp-wave ripple waveforms reveals input mechanisms behind feature variations.

Journal: Nature neuroscience

Authors' code: colab.research.google.com/drive/1ahg4uq15noby2ti7kc3hqfekocdrzisa (no license), scikit-tda/ripser.py (MIT), PridaLab/Topological_SWR (no license)

Status: code verified, 23 files readable

[32309] doi:10.1038/s41593-023-01475-5 [paper, repository]

Transcriptionally defined amygdala subpopulations play distinct roles in innate social behaviors.

Journal: Nature neuroscience

Authors' code: pdollar/toolbox (no license), Zenodo 8357846 (no license)

Status: code verified, 263 files readable

[32310] doi:10.1038/s42003-023-05491-w [paper, repository]

Hippocampal interneuronal dysfunction and hyperexcitability in a porcine model of concussion.

Journal: Communications biology

Authors' code: klusta-team/klustaviewa (BSD-3-Clause), mathworks.com/products/matlab.html (no license)

Status: code verified, 101 files readable, 1 match

[32311] doi:10.1038/s42255-023-00931-7 [paper, data]

Glucose-dependent insulinotropic polypeptide regulates body weight and food intake via GABAergic neurons in mice.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[32312] doi:10.1038/s43587-023-00517-8 [paper, data]

The CRTC-1 transcriptional domain is required for COMPASS complex-mediated longevity in C. elegans.

Journal: Nature aging

Status: data only, 1 dataset cited

[32313] doi:10.1080/23273798.2023.2279083 [paper, data]

Semantic object processing is modulated by prior scene context.

Journal: Language, cognition and neuroscience

Status: data only, 1 dataset cited

[32314] doi:10.1088/1741-2552/ad0858 [paper, repository]

Model-based analysis of subthreshold mechanisms of spinal cord stimulation for pain.

Journal: Journal of neural engineering

Authors' code: neuromodulation-um/local_cells (MIT)

Status: code verified, 10 files readable, 1 match

[32315] doi:10.1162/imag_a_00028 [paper, repository]

Short- and long-term effects of emotion up- and down-regulation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF ktjnw (no license)

Status: code verified, 3 files readable

[32316] doi:10.1186/s12911-023-02354-6 [paper, repository]

Predicting multiple sclerosis severity with multimodal deep neural networks.

Journal: BMC medical informatics and decision making

Authors' code: anotherkaizhang/MS (no license)

Status: code verified, 12 files readable, 6 matches

[32317] doi:10.1186/s12915-023-01711-1 [paper, data]

Integrative single-cell RNA-seq analysis of vascularized cerebral organoids.

Journal: BMC biology

Status: data only, 2 datasets cited

[32318] doi:10.1186/s12915-023-01756-2 [paper, data]

Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus.

Journal: BMC biology

Status: data only, 17 datasets cited

[32319] doi:10.1186/s40478-023-01674-y [paper, repository]

Accurate digital quantification of tau pathology in progressive supranuclear palsy.

Journal: Acta neuropathologica communications

Authors' code: gitlab.developers.cam.ac.uk/tp500/digital-neuropathology (no license)

Status: dead link

[32320] doi:10.1371/journal.pbio.3002352 [paper, repository]

Differential adhesion during development establishes individual neural stem cell niches and shapes adult behaviour in Drosophila.

Journal: PLoS biology

Authors' code: Zenodo 8426002 (CC-BY-4.0)

Status: code verified, 1 file readable

[32321] doi:10.1371/journal.pbio.3002357 [paper, repository]

Accurate classification of major brain cell types using in vivo imaging and neural network processing.

Journal: PLoS biology

Authors' code: heidata.uni-heidelberg.de/dataset.xhtml (no license), adgpta/NuCLear (BSD-2-Clause)

Status: code verified, 18 files readable, 5 matches

[32322] doi:10.1371/journal.pbio.3002365 [paper, repository]

The regional variation of laminar thickness in the human isocortex is related to cortical hierarchy and interregional connectivity.

Journal: PLoS biology

Authors' code: amnsbr/laminar_organization (no license), Zenodo 8410965 (other-open), hub.docker.com/r/amnsbr (no license), FZJ-INM1-BDA/celldetection (Apache-2.0), MICA-MNI/ENIGMA (BSD-3-Clause)

Status: code verified, 203 files readable, 7 matches

[32323] doi:10.1371/journal.pcbi.1011613 [paper, repository]

Using normative modeling and machine learning for detecting mild traumatic brain injury from magnetoencephalography data.

Journal: PLoS computational biology

Authors' code: Zenodo 8360527 (CC-BY-4.0)

Status: code verified, 53 files readable, 8 matches

[32324] doi:10.1371/journal.pcbi.1011622 [paper, repository]

Learning efficient representations of environmental priors in working memory.

Journal: PLoS computational biology

Authors' code: teissa/HeterogeneousWorkingMemory (no license)

Status: code verified, 43 files readable, 5 matches

[32325] doi:10.1371/journal.pone.0291943 [paper, repository]

The microRNA-mediated gene regulatory network in the hippocampus and hypothalamus of the aging mouse.

Journal: PloS one

Authors' code: egeulgen/pathfindR (other)

Status: code verified, 92 files readable, 1 match

[32326] doi:10.1371/journal.pone.0293886 [paper, repository]

Population-wise labeling of sulcal graphs using multi-graph matching.

Journal: PloS one

Authors' code: gauzias/sulcal_graphs_matching (no license)

Status: code verified, 45 files readable, 7 matches

[32327] doi:10.3389/fnhum.2023.1243750 [paper, data]

Variance characteristic preserving common spatial pattern for motor imagery BCI.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[32328] doi:10.3390/brainsci13111570 [paper, repository]

Predictive Biomarkers of Treatment Response in Major Depressive Disorder.

Journal: Brain sciences

Authors' code: fooof-tools/fooof (Apache-2.0)

Status: code verified, 234 files readable

[32329] doi:10.3390/diagnostics13223420 [paper, repository]

MRI and CT Fusion in Stereotactic Electroencephalography (SEEG).

Journal: Diagnostics (Basel, Switzerland)

Authors' code: andresprzh/SEEGFusion (MIT)

Status: code verified, 10 files readable, 3 matches

[32330] doi:10.3390/metabo13111139 [paper, repository]

Matrix Selection for the Visualization of Small Molecules and Lipids in Brain Tumors Using Untargeted MALDI-TOF Mass Spectrometry Imaging.

Journal: Metabolites

Authors' code: BCRL-tylu/Matrix-optimisation (no license)

Status: code verified, 11 files readable, 8 matches

[32331] doi:10.7717/peerj.16408 [paper, data]

Investigating altered brain functional hubs and causal connectivity in coronary artery disease with cognitive impairment.

Journal: PeerJ

Status: data only, 1 dataset cited

Wednesday, 8 November 2023 (28 papers)

[32332] doi:10.1002/jcsm.13344 [paper, data]

Exercise attenuates polyglutamine-mediated neuromuscular degeneration in a mouse model of spinal and bulbar muscular atrophy.

Journal: Journal of cachexia, sarcopenia and muscle

Status: data only, 1 dataset cited

[32333] doi:10.1016/j.celrep.2023.113374 [paper, data]

The expression profile and tumorigenic mechanisms of CD97 (ADGRE5) in glioblastoma render it a targetable vulnerability.

Journal: Cell reports

Status: code on request, 1 dataset cited

[32334] doi:10.1016/j.xcrm.2023.101278 [paper, repository]

Cholesterol 24-hydroxylase at the choroid plexus contributes to brain immune homeostasis.

Journal: Cell reports. Medicine

Authors' code: Zenodo 8251509 (other-open), Zenodo 8249889 (other-open), satomindog/cyp46a1 (no license), morkenigs/choroid-plexus-rna-seq (no license)

Status: code verified, 6 files readable, 5 matches

[32335] doi:10.1021/acs.molpharmaceut.3c00496 [paper, data]

Cyanine Dye Conjugation Enhances Crizotinib Localization to Intracranial Tumors, Attenuating NF-κB-Inducing Kinase Activity and Glioma Progression.

Journal: Molecular pharmaceutics

Status: data only, 1 dataset cited

[32336] doi:10.1021/acsomega.3c06448 [paper, repository]

Comprehensive Transcriptomic Investigation of Rett Syndrome Reveals Increasing Complexity Trends from Induced Pluripotent Stem Cells to Neurons with Implications for Enriched Pathways.

Journal: ACS omega

Authors' code: Odabasi-Yusuf/Rett-Syndrome (no license)

Status: code verified, 3 files readable

[32337] doi:10.1038/s41380-023-02309-3 [paper, repository]

Functional involvement of septal miR-132 in extinction and oxytocin-mediated reversal of social fear.

Journal: Molecular psychiatry

Authors' code: uschwartz/miR132_in_social_fear- (no license)

Status: code verified, 6 files readable, 5 matches

[32338] doi:10.1038/s41380-023-02311-9 [paper, repository]

Integrative transcriptome- and DNA methylation analysis of brain tissue from the temporal pole in suicide decedents and their controls.

Journal: Molecular psychiatry

Authors' code: psychesha21/RNAseq_Analysis (no license), psychesha21/DNA-methylation (no license)

Status: code verified, 6 files readable, 4 matches

[32339] doi:10.1038/s41467-023-41972-6 [paper, data]

Neural circuit selective for fast but not slow dopamine increases in drug reward.

Journal: Nature communications

Status: data only, 1 dataset cited

[32340] doi:10.1038/s41586-023-06714-0 [paper, repository]

Preserved neural dynamics across animals performing similar behaviour.

Journal: Nature

Authors' code: janelia-pypi/mouse_joystick_interface_python (BSD-3-Clause), billkarsh/SpikeGLX (BSD-3-Clause), BeNeuroLab/2022-preserved-dynamics (MIT)

Status: code verified, 411 files readable, 4 matches

[32341] doi:10.1038/s41586-023-06715-z [paper, repository]

Neural landscape diffusion resolves conflicts between needs across time.

Journal: Nature

Authors' code: erichamc/brainwide-npix (Apache-2.0), jenniferColonell/ecephys_spike_sorting (BSD-2-Clause), erichamc/neural-landscape-diffusion (MIT)

Status: code verified, 138 files readable, 17 matches

[32342] doi:10.1038/s41597-023-02683-1 [paper, repository]

A brain MRI dataset and baseline evaluations for tumor recurrence prediction after Gamma Knife radiotherapy.

Journal: Scientific data

Authors' code: siolmsstate/brain_mri (MIT)

Status: code verified, 5 files readable, 1 match

[32343] doi:10.1038/s41598-023-45905-7 [paper, repository]

The impact of brain lesions on tDCS-induced electric fields.

Journal: Scientific reports

Authors' code: ainsliej/ROAST_lesion (no license)

Status: code verified, 1,511 files readable, 7 matches

[32344] doi:10.1073/pnas.2308670120 [paper, repository]

A thalamocortical substrate for integrated information via critical synchronous bursting.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Bmunn/Layer5_Arousal (no license)

Status: code verified, 4 files readable, 3 matches

[32345] doi:10.1080/15548627.2023.2274204 [paper, repository]

ATG9 resides on a unique population of small vesicles in presynaptic nerve terminals.

Journal: Autophagy

Authors' code: ssamban1/Minflux (no license)

Status: empty repository

[32346] doi:10.1080/19336918.2023.2276615 [paper, repository]

A toolbox to analyze collective cell migration, proliferation and cellular organization simultaneously.

Journal: Cell adhesion & migration

Authors' code: Herodot1/CollectiveCellMigration (no license)

Status: code verified, 181 files readable, 11 matches

[32347] doi:10.1093/braincomms/fcad307 [paper]

The Brainbox<i>-</i>a tool to facilitate correlation of brain magnetic resonance imaging features to histopathology.

Journal: Brain communications

Status: code on request

[32348] doi:10.1111/ejn.16180 [paper, data]

Inhibition of striatal dopamine release by the L-type calcium channel inhibitor isradipine co-varies with risk factors for Parkinson's.

Journal: The European journal of neuroscience

Status: data only, 2 datasets cited

[32349] doi:10.1126/sciadv.adf6251 [paper, repository]

Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus.

Journal: Science advances

Authors' code: Zenodo 10019390 (CC-BY-4.0), brianherb/HumanHypoDev2Adult (no license)

Status: code verified, 32 files readable, 30 matches

[32350] doi:10.1126/sciadv.adh4690 [paper, data]

Truly pattern: Nonlinear integration of motion signals is required to account for the responses of pattern cells in rat visual cortex.

Journal: Science advances

Status: data only, 1 dataset cited

[32351] doi:10.1152/jn.00277.2023 [paper, data]

Side-by-side regions in dorsolateral prefrontal cortex estimated within the individual respond differentially to domain-specific and domain-flexible processes.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[32352] doi:10.1186/s44158-023-00131-5 [paper]

Treatment of cerebral ventriculitis with a new self-irrigating catheter system: narrative review and case series.

Journal: Journal of anesthesia, analgesia and critical care

Status: code on request

[32353] doi:10.3390/brainsci13111568 [paper, repository]

Structural and Physiological Modeling (SAPM) for the Analysis of Functional MRI Data Applied to a Study of Human Nociceptive Processing.

Journal: Brain sciences

Authors' code: stromanp/pantheon-fMRI (no license)

Status: code verified, 32 files readable, 8 matches

[32354] doi:10.3390/s23229045 [paper, data]

Accurate Monitoring of 24-h Real-World Movement Behavior in People with Cerebral Palsy Is Possible Using Multiple Wearable Sensors and Deep Learning.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[32355] doi:10.3390/s23229049 [paper, data]

Domain-Specific Processing Stage for Estimating Single-Trail Evoked Potential Improves CNN Performance in Detecting Error Potential.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[32356] doi:10.7554/elife.86695 [paper, repository]

A reductionist paradigm for high-throughput behavioural fingerprinting in <i>Drosophila melanogaster</i>.

Journal: eLife

Authors' code: Zenodo 7335575 (CC-BY-4.0), supp:PMC10631757/elife-86695-supp2.zip (no license)

Status: code verified, 3 files readable

[32357] doi:10.7554/elife.89837 [paper, repository]

Persistence of intact HIV-1 proviruses in the brain during antiretroviral therapy.

Journal: eLife

Authors' code: BWH-Lichterfeld-Lab/Intactness-Pipeline (MIT)

Status: code verified, 17 files readable, 2 matches

[32358] doi:10.7554/elife.89993 [paper, repository]

Temporally specific gene expression and chromatin remodeling programs regulate a conserved <i>Pdyn</i> enhancer.

Journal: eLife

Authors' code: Jeremy-Day-Lab/Phillips_etal_2023 (no license)

Status: code verified, 13 files readable, 14 matches

[32359] doi:10.7717/peerj.16362 [paper, repository]

A multimodal prediction model for suicidal attempter in major depressive disorder.

Journal: PeerJ

Authors' code: supp:PMC10638918/peerj-11-16362-s002.ipynb (no license)

Status: code verified, 1 file readable

Tuesday, 7 November 2023 (27 papers)

[32360] doi:10.1016/j.bas.2023.102706 [paper, data]

Computer-vision based analysis of the neurosurgical scene - A systematic review.

Journal: Brain & spine

Status: data only, 1 dataset cited

[32361] doi:10.1016/j.isci.2023.108411 [paper, repository]

Dietary fish oil enriched in very-long-chain polyunsaturated fatty acid reduces cardiometabolic risk factors and improves retinal function.

Journal: iScience

Authors' code: pachterlab/kallisto (BSD-2-Clause)

Status: code verified, 447 files readable

[32362] doi:10.1016/j.isci.2023.108412 [paper]

Amyloid-β_1-42 oligomers enhance mGlu₅R-dependent synaptic weakening via NMDAR activation and complement C5aR1 signaling.

Journal: iScience

Status: code on request

[32363] doi:10.1016/j.xpro.2023.102699 [paper]

Long-term live cell imaging during differentiation of human iPSC-derived neurons.

Journal: STAR protocols

Status: code on request

[32364] doi:10.1016/j.ynirp.2023.100191 [paper, repository]

ImageNomer: Description of a functional connectivity and omics analysis tool and case study identifying a race confound.

Journal: Neuroimage. Reports

Authors' code: TulaneMBB/ImageNomer (MIT)

Status: code verified, 37 files readable, 2 matches

[32365] doi:10.1038/s41467-023-42507-9 [paper, data]

Functional dissection of PRC1 subunits RYBP and YAF2 during neural differentiation of embryonic stem cells.

Journal: Nature communications

Status: data only, 3 datasets cited

[32366] doi:10.1038/s41467-023-42968-y [paper, repository]

Selective plasticity of fast and slow excitatory synapses on somatostatin interneurons in adult visual cortex.

Journal: Nature communications

Authors' code: heykyounglee/4xLTP-igor (GPL-3.0), bdgrier/whole-cell-data-analysis (no license)

Status: code verified, 10 files readable

[32367] doi:10.1038/s41597-023-02693-z [paper, data]

A uniform human multimodal dataset for emotion perception and judgment.

Journal: Scientific data

Status: data only, 1 dataset cited

[32368] doi:10.1038/s42003-023-05497-4 [paper, repository]

Eigenmode-based approach reveals a decline in brain structure-function liberality across the human lifespan.

Journal: Communications biology

Authors' code: spin-test/spin-test (MIT)

Status: code verified, 89 files readable, 2 matches

[32369] doi:10.1073/pnas.2302655120 [paper, repository]

Rats respond to aversive emotional arousal of human handlers with the activation of the basolateral and central amygdala.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF gx3jv (no license), nencki-lobi/emocon-humans-rats (no license)

Status: code verified, 13 files readable, 9 matches

[32370] doi:10.1162/imag_a_00026 [paper, repository]

Synchronous high-amplitude co-fluctuations of functional brain networks during movie-watching.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: JacobColbyTanner/find-synchronous-events (MIT)

Status: code verified, 10 files readable

[32371] doi:10.1162/imag_a_00027 [paper, data]

Separable processes for live "in-person" and live "zoom-like" faces.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[32372] doi:10.1162/imag_a_00029 [paper, repository]

Combining magnetoencephalography with telemetric streaming of intracranial recordings and deep brain stimulation-A feasibility study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: vlitvak/meg-phantom-perceptPC (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[32373] doi:10.1186/s12877-023-04417-9 [paper]

Cingulate white matter mediates the effects of fecal Ruminococcus on neuropsychiatric symptoms in patients with amyloid-positive amnestic mild cognitive impairment.

Journal: BMC geriatrics

Status: data only

[32374] doi:10.1186/s12967-023-04681-8 [paper]

A multi-task deep learning model for EGFR genotyping prediction and GTV segmentation of brain metastasis.

Journal: Journal of translational medicine

Status: code on request

[32375] doi:10.1186/s13195-023-01328-0 [paper, data]

Subject classification and cross-time prediction based on functional connectivity and white matter microstructure features in a rat model of Alzheimer's using machine learning.

Journal: Alzheimer's research & therapy

Status: data only, 2 datasets cited

[32376] doi:10.1186/s40168-023-01656-1 [paper, data]

Microbiota-indole 3-propionic acid-brain axis mediates abnormal synaptic pruning of hippocampal microglia and susceptibility to ASD in IUGR offspring.

Journal: Microbiome

Status: data only, 1 dataset cited

[32377] doi:10.1364/boe.505217 [paper, repository]

Rapid 3D isotropic imaging of whole organ with double-ring light-sheet microscopy and self-learning side-lobe elimination.

Journal: Biomedical optics express

Authors' code: XinyiGuo2023/SLEM (no license)

Status: code verified, 3 files readable

[32378] doi:10.1371/journal.pcbi.1011574 [paper, repository]

Inferring causal connectivity from pairwise recordings and optogenetics.

Journal: PLoS computational biology

Authors' code: lepmik/causal-optoconnectics (GPL-3.0)

Status: code verified, 67 files readable, 4 matches

[32379] doi:10.1503/jpn.230049 [paper, data]

Neural mechanism underlying the beneficial effect of Theory of Mind psychotherapy on early-onset schizophrenia: a randomized controlled trial.

Journal: Journal of psychiatry & neuroscience : JPN

Status: data only, 1 dataset cited

[32380] doi:10.1523/eneuro.0297-23.2023 [paper, repository]

Plasticity in Preganglionic and Postganglionic Neurons of the Sympathetic Nervous System during Embryonic Development.

Journal: eNeuro

Authors' code: April-Neuro/SPN-PGN-Analysis (no license)

Status: code verified, 5 files readable

[32381] doi:10.3389/fcell.2023.1240920 [paper, data]

NG2/CSPG4 attenuates motility in mandibular fibrochondrocytes under serum starvation conditions.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[32382] doi:10.3389/fendo.2023.1228504 [paper, repository]

Morphologic alterations of the fear circuitry: the role of sex hormones and oral contraceptives.

Journal: Frontiers in endocrinology

Authors' code: OSF spgtv (no license)

Status: code verified, 7 files readable

[32383] doi:10.3389/fnmol.2023.1253669 [paper, repository]

Role of α2δ-3 in regulating calcium channel localization at presynaptic active zones during homeostatic plasticity.

Journal: Frontiers in molecular neuroscience

Authors' code: wanglab-georgetown/alphafold_a2d3 (Apache-2.0)

Status: code verified, 5 files readable

[32384] doi:10.3389/fpsyt.2023.1250268 [paper, data]

Brain signatures of chronic gut inflammation.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[32385] doi:10.3390/brainsci13111563 [paper, repository]

Electrophysiological Correlates of Vocal Emotional Processing in Musicians and Non-Musicians.

Journal: Brain sciences

Authors' code: OSF 2jt5h (no license)

Status: code verified

[32386] doi:10.3390/brainsci13111564 [paper]

Navigating the Gene Co-Expression Network and Drug Repurposing Opportunities for Brain Disorders Associated with Neurocognitive Impairment.

Journal: Brain sciences

Status: data only

Monday, 6 November 2023 (24 papers)

[32387] doi:10.1002/alz.13521 [paper, data]

Associations of the Mediterranean-DASH Intervention for Neurodegenerative Delay diet with brain structural markers and their changes.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[32388] doi:10.1016/j.celrep.2023.113384 [paper]

Pathway-specific alterations in striatal excitability and cholinergic modulation in a SAPAP3 mouse model of compulsive motor behavior.

Journal: Cell reports

Status: code on request

[32389] doi:10.1016/j.celrep.2023.113387 [paper]

Fat- and sugar-induced signals regulate sweet and fat taste perception in Drosophila.

Journal: Cell reports

Status: code on request

[32390] doi:10.1016/j.neuron.2023.09.043 [paper, repository]

The neuropeptidergic connectome of C. elegans.

Journal: Neuron

Authors' code: LidiaRipollSanchez/Neuropeptide-Connectome (MIT), Zenodo 8387059 (other-open), manlius/muxViz (GPL-3.0), amin-nejat/CELL_ID (no license)

Status: code verified, 161 files readable, 19 matches

[32391] doi:10.1021/acs.jmedchem.3c01026 [paper, data]

Targeting Glial Cells by Organic Anion-Transporting Polypeptide 1C1 (OATP1C1)-Utilizing l-Thyroxine-Derived Prodrugs.

Journal: Journal of medicinal chemistry

Status: data only, 1 dataset cited

[32392] doi:10.1038/s41419-023-06237-6 [paper, data]

ChemR23 activation attenuates cognitive impairment in chronic cerebral hypoperfusion by inhibiting NLRP3 inflammasome-induced neuronal pyroptosis.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[32393] doi:10.1038/s41467-023-42555-1 [paper, repository]

High-resolution neural recordings improve the accuracy of speech decoding.

Journal: Nature communications

Authors' code: Zenodo 8384194 (other-open), coganlab/micro_ecog_phoneme_decoding (GPL-3.0)

Status: code verified, 82 files readable, 10 matches

[32394] doi:10.1038/s41467-023-42945-5 [paper, repository]

Covariance patterns between sleep health domains and distributed intrinsic functional connectivity.

Journal: Nature communications

Authors' code: danizoeller/myPLS (GPL-2.0), frantisekvasa/rotate_parcellation (MIT), csie.ntu.edu.tw/~cjlin/libsvm (no license), cocoanlab/cocoancore (GPL-3.0)

Status: code verified, 171 files readable, 6 matches

[32395] doi:10.1038/s41467-023-43070-z [paper, data]

Pathogenesis-adaptive polydopamine nanosystem for sequential therapy of ischemic stroke.

Journal: Nature communications

Status: data only, 1 dataset cited

[32396] doi:10.1038/s41598-023-45526-0 [paper, data]

Unraveling the influence of trial-based motivational changes on performance monitoring stages in a flanker task.

Journal: Scientific reports

Status: data only, 1 dataset cited

[32397] doi:10.1038/s41598-023-46382-8 [paper, repository]

A universal framework for accurate and efficient geometric deep learning of molecular systems.

Journal: Scientific reports

Authors' code: paddlepaddle/paddlehelix (CC-BY-NC-SA-4.0), XieResearchGroup/Physics-aware-Multiplex-GNN (other)

Status: code verified, 948 files readable, 11 matches

[32398] doi:10.1073/pnas.2302089120 [paper, repository]

Controlling donor and newborn neuron migration and maturation in the eye through microenvironment engineering.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mcrewcow/BaranovLab (AGPL-3.0)

Status: code verified, 10 files readable, 1 match

[32399] doi:10.1186/s10194-023-01673-3 [paper, data]

Increased glymphatic system activity in migraine chronification by diffusion tensor image analysis along the perivascular space.

Journal: The journal of headache and pain

Status: data only, 1 dataset cited

[32400] doi:10.1186/s12915-023-01723-x [paper]

Taste receptor type 1 member 3 enables western diet-induced anxiety in mice.

Journal: BMC biology

Status: data only

[32401] doi:10.1186/s13044-023-00176-2 [paper]

Changes in brain structure in subjects with resistance to thyroid hormone due to THRB mutations.

Journal: Thyroid research

Status: code on request

[32402] doi:10.1371/journal.pgen.1011010 [paper, data]

Her6 and Prox1a are novel regulators of photoreceptor regeneration in the zebrafish retina.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[32403] doi:10.3346/jkms.2023.38.e356 [paper, data]

Brain Tumor Classification by Methylation Profile.

Journal: Journal of Korean medical science

Status: data only, 1 dataset cited

[32404] doi:10.3389/fcell.2023.1286915 [paper, repository]

Recently recycled synaptic vesicles use multi-cytoskeletal transport and differential presynaptic capture probability to establish a retrograde net flux during ISVE in central neurons.

Journal: Frontiers in cell and developmental biology

Authors' code: Zenodo 10048388 (CC-BY-4.0), au-neurophysics-lab/recycled-synaptic-vesicle-isve-mobility-and-retrograde-capture-models (Apache-2.0)

Status: code verified, 16 files readable, 1 match

[32405] doi:10.3389/fnana.2023.1303888 [paper, data]

Proportions of four distinct classes of sensory neurons are retained even when axon regeneration is enhanced following peripheral nerve injury.

Journal: Frontiers in neuroanatomy

Status: data only, 1 dataset cited

[32406] doi:10.3389/fnins.2023.1289013 [paper, repository]

Spectral-based thickness profiling of the corpus callosum enhances anomaly detection in fetal alcohol spectrum disorders.

Journal: Frontiers in neuroscience

Authors' code: JulienLefevreMars/CorpusCallosumParameterization (other)

Status: code verified, 12 files readable, 2 matches

[32407] doi:10.3390/biom13111622 [paper, data]

LncRNAs and CircRNAs as Strategies against Pathological Conditions Caused by a Hypoxic/Anoxic State.

Journal: Biomolecules

Status: data only, 1 dataset cited

[32408] doi:10.3390/cells12212583 [paper, repository]

Correlation of Plasma Membrane Microviscosity and Cell Stiffness Revealed via Fluorescence-Lifetime Imaging and Atomic Force Microscopy.

Journal: Cells

Authors' code: yu-efremov/ViscoIndent (MIT)

Status: code verified, 34 files readable, 4 matches

[32409] doi:10.3390/s23218994 [paper, repository]

A Deep Learning Framework for Anesthesia Depth Prediction from Drug Infusion History.

Journal: Sensors (Basel, Switzerland)

Authors' code: chanwendy/Domain-adaptation-DOA-prediction (MIT)

Status: code verified, 34 files readable, 1 match

[32410] doi:10.3758/s13423-023-02412-0 [paper, repository]

A preference to look closer to the eyes is associated with a position-invariant face neural code.

Journal: Psychonomic bulletin & review

Authors' code: OSF t795b (no license)

Status: code verified, 1 file readable

Sunday, 5 November 2023 (4 papers)

[32411] doi:10.1016/j.celrep.2023.113390 [paper, repository]

Layers of inhibitory networks shape receptive field properties of AII amacrine cells.

Journal: Cell reports

Authors' code: SchwartzNU/SymphonyAnalysis (no license)

Status: code verified, 445 files readable, 3 matches

[32412] doi:10.1111/bpa.13218 [paper, data]

Automated analysis of gray matter damage in aged mice reveals impaired remyelination in the cuprizone model.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only, 3 datasets cited

[32413] doi:10.3390/cells12212579 [paper, data]

Mechanisms Underlying Rare Inherited Pediatric Retinal Vascular Diseases: FEVR, Norrie Disease, Persistent Fetal Vascular Syndrome.

Journal: Cells

Status: data only, 11 datasets cited

[32414] doi:10.3390/nu15214691 [paper, repository]

Multi-Omics Data Integration Reveals Sex-Dependent Hippocampal Programming by Maternal High-Fat Diet during Lactation in Adult Mouse Offspring.

Journal: Nutrients

Authors' code: AlexandrePelletier/HippoProgRegulome (no license)

Status: code verified, 2 files readable, 5 matches

Saturday, 4 November 2023 (12 papers)

[32415] doi:10.1007/s11325-023-02929-7 [paper, data]

Relationship between circadian rhythm-related genes and extracellular matrix: implications for sleep deprivation.

Journal: Sleep & breathing = Schlaf & Atmung

Status: data only, 1 dataset cited

[32416] doi:10.1016/j.isci.2023.108398 [paper, repository]

Information integration during bioelectric regulation of morphogenesis of the embryonic frog brain.

Journal: iScience

Authors' code: smanicka/neuralPlatePatterning (no license)

Status: code verified, 38 files readable, 2 matches

[32417] doi:10.1016/j.neuroimage.2023.120436 [paper, repository]

Unified topological inference for brain networks in temporal lobe epilepsy using the Wasserstein distance.

Journal: NeuroImage

Authors' code: laplcebeltrami/PH-STAT (no license)

Status: code verified, 60 files readable, 14 matches

[32418] doi:10.1038/s41467-023-41743-3 [paper, repository]

Sampling-based Bayesian inference in recurrent circuits of stochastic spiking neurons.

Journal: Nature communications

Authors' code: wenhao-z/Sampling_PoissSpk_Neuron (Apache-2.0), Zenodo 8088755 (other-open)

Status: code verified, 98 files readable, 6 matches

[32419] doi:10.1038/s41467-023-42711-7 [paper, repository]

Daily rhythm in cortical chloride homeostasis underpins functional changes in visual cortex excitability.

Journal: Nature communications

Authors' code: GabNar/Pracucci_Graham_Alberio_Nardi_et_al_2023 (no license)

Status: code verified, 70 files readable, 3 matches

[32420] doi:10.1038/s41467-023-42751-z [paper, repository]

Spatial transcriptomics reveals unique gene expression changes in different brain regions after sleep deprivation.

Journal: Nature communications

Authors' code: YannVRB/Sleep-deprivation-spatial-transcriptomic (no license), research-git.uiowa.edu/zjpeters/stanly (no license)

Status: code verified, 2 files readable

[32421] doi:10.1038/s41467-023-42752-y [paper, data]

Systemic and intrinsic functions of ATRX in glial cell fate and CNS myelination in male mice.

Journal: Nature communications

Status: data only, 2 datasets cited

[32422] doi:10.1038/s41467-023-42860-9 [paper]

The ultra-thin, minimally invasive surface electrode array NeuroWeb for probing neural activity.

Journal: Nature communications

Status: code on request

[32423] doi:10.1038/s41467-023-42984-y [paper, repository]

Training large-scale optoelectronic neural networks with dual-neuron optical-artificial learning.

Journal: Nature communications

Authors' code: yuanxy92/DANTE (MIT)

Status: code verified, 15 files readable, 4 matches

[32424] doi:10.1038/s41597-023-02664-4 [paper, repository]

An Open Science MRI Database of over 100 Synaesthetic Brains and Accompanying Deep Phenotypic Information.

Journal: Scientific data

Authors' code: OSF ycqgd (no license), nda.nih.gov (no license)

Status: code verified

[32425] doi:10.1038/s41746-023-00934-4 [paper, repository]

Relay learning: a physically secure framework for clinical multi-site deep learning.

Journal: NPJ digital medicine

Authors' code: MeteorsHub/RelayLearning (Apache-2.0)

Status: code verified, 57 files readable, 2 matches

[32426] doi:10.3390/s23218976 [paper, data]

Efficient Multiple Channels EEG Signal Classification Based on Hierarchical Extreme Learning Machine.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 3 November 2023 (22 papers)

[32427] doi:10.1016/j.isci.2023.108390 [paper]

Cold-induced suspension and resetting of Ca²⁺ and transcriptional rhythms in the suprachiasmatic nucleus neurons.

Journal: iScience

Status: code on request

[32428] doi:10.1016/j.molmet.2023.101833 [paper, repository]

AgRP neuron activity promotes associations between sensory and nutritive signals to guide flavor preference.

Journal: Molecular metabolism

Authors' code: nathanielnyema/fnc_agrp_project (no license), nathanielnyema/lickometer (no license)

Status: code verified, 13 files readable, 8 matches

[32429] doi:10.1038/s41467-023-42588-6 [paper, repository]

Diurnal oscillations of MRI metrics in the brains of male participants.

Journal: Nature communications

Authors' code: matthewcarlucci/DiurnalMRI (other), Zenodo 8360408 (CC-BY-4.0)

Status: code verified, 68 files readable, 11 matches

[32430] doi:10.1038/s41467-023-42822-1 [paper, repository]

Integrative analysis reveals a conserved role for the amyloid precursor protein in proteostasis during aging.

Journal: Nature communications

Authors' code: bwh-bioinformatics-hub/HUB_vanitha2022_scRNA-seq (no license)

Status: code verified, 7 files readable, 4 matches

[32431] doi:10.1038/s41467-023-42825-y [paper, data]

Dissecting the human leptomeninges at single-cell resolution.

Journal: Nature communications

Status: code on request, 1 dataset cited

[32432] doi:10.1038/s41467-023-42864-5 [paper, repository]

Rapid threat assessment in the Drosophila thermosensory system.

Journal: Nature communications

Authors' code: MarcoGallio/GallioLab (no license)

Status: code verified, 6 files readable, 4 matches

[32433] doi:10.1038/s41598-023-46450-z [paper]

Brain activity characteristics of RGB stimulus: an EEG study.

Journal: Scientific reports

Status: code on request

[32434] doi:10.1038/s42003-023-05429-2 [paper, data]

Neurocomputational mechanisms of biased impression formation in lonely individuals.

Journal: Communications biology

Status: data only, 2 datasets cited

[32435] doi:10.1038/s42003-023-05499-2 [paper, repository]

Disrupted network interactions serve as a neural marker of dyslexia.

Journal: Communications biology

Authors' code: OSF cy8tk (no license)

Status: empty repository

[32436] doi:10.1073/pnas.2313058120 [paper, repository]

The roles of surround inhibition for the intrinsic function of the striatum, analyzed in silico.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Hjorthmedh/Snudda (GPL-3.0), jofrony/current_bgd2_analysis (no license)

Status: code verified, 129 files readable, 2 matches

[32437] doi:10.1162/imag_a_00024 [paper, repository]

Striatal response to negative feedback in a stop signal task operates as a multi-value learning signal.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: UOSAN/SST_DEV (no license), UOSAN/DEV_scripts (no license), files.osf.io/v1/resources (no license)

Status: code verified, 592 files readable, 4 matches

[32438] doi:10.1186/s12987-023-00482-9 [paper, data]

A tissue-engineered model of the blood-tumor barrier during metastatic breast cancer.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[32439] doi:10.1186/s13041-023-01063-5 [paper, repository]

Limitations of the human iPSC-derived neuron model for early-onset Alzheimer's disease.

Journal: Molecular brain

Authors' code: SubramaniamLab/EOAD-RNA-seq-Manuscript (no license), Zenodo 8320537 (other-open), subramaniamlab/eoad-rnaseq-manuscript (no license)

Status: code verified, 6 files readable, 3 matches

[32440] doi:10.1523/eneuro.0282-23.2023 [paper, repository]

Distributed Coding of Evidence Accumulation across the Mouse Brain Using Microcircuits with a Diversity of Timescales.

Journal: eNeuro

Authors' code: ElahehImani/NeuralCorrelateEvidenceAcc (GPL-3.0)

Status: code verified, 39 files readable, 7 matches

[32441] doi:10.1523/eneuro.0507-22.2023 [paper, repository]

Different Methods to Estimate the Phase of Neural Rhythms Agree But Only During Times of Low Uncertainty.

Journal: eNeuro

Authors' code: Eden-Kramer-Lab/UncertaintyInPhase (GPL-3.0)

Status: code verified, 16 files readable, 2 matches

[32442] doi:10.3389/fnins.2023.1292724 [paper, data]

Cauchy non-convex sparse feature selection method for the high-dimensional small-sample problem in motor imagery EEG decoding.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[32443] doi:10.3390/diagnostics13213382 [paper, data]

A Novel Prognostic Model Using Chaotic CNN with Hybridized Spoofing for Enhancing Diagnostic Accuracy in Epileptic Seizure Prediction.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[32444] doi:10.3390/microorganisms11112694 [paper, repository]

A Synthetic Formula Amino Acid Diet Leads to Microbiome Dysbiosis, Reduced Colon Length, Inflammation, and Altered Locomotor Activity in C57BL/6J Mice.

Journal: Microorganisms

Authors' code: vivmancilla/SyntheticDiet (no license)

Status: dead link

[32445] doi:10.7554/elife.83702 [paper, repository]

History information emerges in the cortex during learning.

Journal: eLife

Authors' code: OSF hkvc5 (no license)

Status: empty repository

[32446] doi:10.7717/peerj-cs.1593 [paper, repository]

Comparing neural sentence encoders for topic segmentation across domains: not your typical text similarity task.

Journal: PeerJ. Computer science

Authors' code: facebookresearch/InferSent (CC-BY-NC-4.0), sebastianarnold/WikiSection (other), Ighina/NSE-TopicSegmentation (no license), Zenodo 8245923 (other-open)

Status: code verified, 45 files readable, 8 matches

[32447] doi:10.7717/peerj-cs.1642 [paper, repository]

Deep learning Binary/Multi classification for music's brainwave entrainment beats.

Journal: PeerJ. Computer science

Authors' code: Zenodo 8341595 (other-open), supp:PMC10703030/peerj-cs-09-1642-s001.m (no license), supp:PMC10703030/peerj-cs-09-1642-s002.m (no license), supp:PMC10703030/peerj-cs-09-1642-s003.m (no license), supp:PMC10703030/peerj-cs-09-1642-s004.m (no license), supp:PMC10703030/peerj-cs-09-1642-s005.m (no license)

Status: code verified, 5 files readable

[32448] doi:10.7717/peerj-cs.1667 [paper, repository]

Next-Gen brain tumor classification: pioneering with deep learning and fine-tuned conditional generative adversarial networks.

Journal: PeerJ. Computer science

Authors' code: iamshaf/CGAN (no license), Zenodo 8383887 (other-open), supp:PMC10702976/peerj-cs-09-1667-s001.ipynb (no license)

Status: code verified, 3 files readable

Thursday, 2 November 2023 (33 papers, 32 on this page)

[32449] doi:10.1002/hbm.26488 [paper, repository]

Functional brain connectivity predicts sleep duration in youth and adults.

Journal: Human brain mapping

Authors' code: esfinn/cpm_tutorial (no license), a-mummaneni/sleep_connectome (no license)

Status: code verified, 5 files readable, 2 matches

[32450] doi:10.1007/s12035-023-03734-9 [paper, data]

Integrated Analysis of Chromatin and Transcriptomic Profiling Identifies PU.1 as a Core Regulatory Factor in Microglial Activation Induced by Chronic Cerebral Hypoperfusion.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[32451] doi:10.1016/j.isci.2023.108379 [paper]

Neocortical neuronal production and maturation defects in the TcMAC21 mouse model of Down syndrome.

Journal: iScience

Status: code on request

[32452] doi:10.1016/j.omtm.2023.101149 [paper]

Tagged IDS causes efficient and engraftment-independent prevention of brain pathology during lentiviral gene therapy for Mucopolysaccharidosis type II.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[32453] doi:10.1016/j.stemcr.2023.10.007 [paper]

Enrichment of FGF8-expressing cells from neurally induced human pluripotent stem cell cultures.

Journal: Stem cell reports

Status: code on request

[32454] doi:10.1038/s41467-023-41083-2 [paper]

Azobenzene-based optoelectronic transistors for neurohybrid building blocks.

Journal: Nature communications

Status: code on request

[32455] doi:10.1038/s41467-023-42626-3 [paper, repository]

Cross species systems biology discovers glial DDR2, STOM, and KANK2 as therapeutic targets in progressive supranuclear palsy.

Journal: Nature communications

Authors' code: doi:10.7303/syn51671671 (no license), doi:10.7303/syn51674938 (no license)

Status: code verified

[32456] doi:10.1038/s41467-023-42721-5 [paper, data]

Deep brain stimulation of thalamic nucleus reuniens promotes neuronal and cognitive resilience in an Alzheimer's disease mouse model.

Journal: Nature communications

Status: data only, 1 dataset cited

[32457] doi:10.1038/s41467-023-42777-3 [paper, repository]

Striatum-projecting prefrontal cortex neurons support working memory maintenance.

Journal: Nature communications

Authors' code: HelmchenLabSoftware/wilhelm-sych-tmaze-analysis (no license)

Status: code verified, 118 files readable, 7 matches

[32458] doi:10.1038/s41539-023-00200-y [paper]

Lasting enhancements in neural efficiency by multi-session transcranial direct current stimulation during working memory training.

Journal: NPJ science of learning

Status: code on request

[32459] doi:10.1038/s41559-023-02238-y [paper, repository]

Single-cell transcriptomics reveals the brain evolution of web-building spiders.

Journal: Nature ecology & evolution

Authors' code: figshare 22303228 (CC-BY-4.0)

Status: code verified, 6 files readable, 10 matches

[32460] doi:10.1038/s41593-023-01451-z [paper]

Age-related dysregulation of homeostatic control in neuronal microcircuits.

Journal: Nature neuroscience

Status: code on request

[32461] doi:10.1038/s41593-023-01479-1 [paper, repository]

Molecular blueprints for spinal circuit modules controlling locomotor speed in zebrafish.

Journal: Nature neuroscience

Authors' code: Zenodo 7252046 (other-open), ElManiraLab/sc-RNAseq (no license), elmaniralab/behaviouralanalysiscode (no license)

Status: code verified, 59 files readable, 8 matches

[32462] doi:10.1038/s41598-023-44480-1 [paper, repository]

Quantitative study of spatial and temporal variation in retinal capillary network perfusion in rat eye by in vivo confocal imaging.

Journal: Scientific reports

Authors' code: supp:PMC10622421/41598_2023_44480_MOESM4_ESM.r (no license)

Status: code verified, 1 file readable

[32463] doi:10.1038/s41598-023-44794-0 [paper, repository]

Multi-class glioma segmentation on real-world data with missing MRI sequences: comparison of three deep learning algorithms.

Journal: Scientific reports

Authors' code: picture-production/picture-qni-robust-glioma-segmentation (no license)

Status: code verified, 709 files readable, 3 matches

[32464] doi:10.1038/s41598-023-45456-x [paper, repository]

Segmentation of glioblastomas in early post-operative multi-modal MRI with deep neural networks.

Journal: Scientific reports

Authors' code: picture-production/picture-nnunet-package/tree/0.3.7 (no license), dbouget/validation_metrics_computation (BSD-2-Clause), raidionics/Raidionics (BSD-2-Clause), Zenodo 7582309 (other-open), andreped/gradientaccumulator (MIT)

Status: code verified, 223 files readable, 6 matches

[32465] doi:10.1080/19585969.2023.2252437 [paper, data]

Neural correlates of negative life events and their relationships with alcohol and cannabis use initiation.

Journal: Dialogues in clinical neuroscience

Status: data only, 1 dataset cited

[32466] doi:10.1089/neu.2023.0377 [paper, repository]

Therapy Intensity Level Scale for Traumatic Brain Injury: Clinimetric Assessment on Neuro-Monitored Patients Across 52 European Intensive Care Units.

Journal: Journal of neurotrauma

Authors' code: sbhattacharyay/CENTER-TBI_TIL (MIT)

Status: code verified, 16 files readable, 21 matches

[32467] doi:10.1093/braincomms/fcad304 [paper, repository]

Optimization of patient-specific stereo-EEG recording sensitivity.

Journal: Brain communications

Authors' code: gitlab.oit.duke.edu/ged12/seeg-rec-sensitivity (no license), Zenodo 7604030 (GPL-2.0)

Status: code verified

[32468] doi:10.1093/texcom/tgad019 [paper, repository]

Frontal mechanisms underlying primate calls recognition by humans.

Journal: Cerebral cortex communications

Authors' code: yareta.unige.ch (no license)

Status: code verified

[32469] doi:10.1126/science.adh5206 [paper, data]

Volitional activation of remote place representations with a hippocampal brain-machine interface.

Journal: Science (New York, N.Y.)

Status: data only, 1 dataset cited

[32470] doi:10.1136/gpsych-2023-101057 [paper, data]

Single-nucleus transcriptome profiling of prefrontal cortex induced by chronic methamphetamine treatment.

Journal: General psychiatry

Status: data only, 1 dataset cited

[32471] doi:10.1162/imag_a_00025 [paper, repository]

Application of a &lt;sup&gt;1&lt;/sup&gt;H brain MRS benchmark dataset to deep learning for out-of-voxel artifacts.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: agudmundson/agnostic (MIT)

Status: code verified, 12 files readable, 13 matches

[32472] doi:10.1186/s12974-023-02930-7 [paper, data]

Characterizing the neuroimmune environment of offspring in a novel model of maternal allergic asthma and particulate matter exposure.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[32473] doi:10.1186/s40478-023-01654-2 [paper, data]

MYC overexpression and SMARCA4 loss cooperate to drive medulloblastoma formation in mice.

Journal: Acta neuropathologica communications

Status: data only, 6 datasets cited

[32474] doi:10.1371/journal.pone.0293725 [paper]

Response retention and apparent motion effect in visual cortex models.

Journal: PloS one

Status: code on request

[32475] doi:10.26508/lsa.202302232 [paper, repository]

Characterization of Na⁺ currents regulating intrinsic excitability of optic tectal neurons.

Journal: Life science alliance

Authors' code: khakhalin/Xenopus-Behavior (MIT)

Status: code verified, 13 files readable, 2 matches

[32476] doi:10.3389/fdgth.2023.1249258 [paper, repository]

Assessing optimal methods for transferring machine learning models to low-volume and imbalanced clinical datasets: experiences from predicting outcomes of Danish trauma patients.

Journal: Frontiers in digital health

Authors' code: a-millarch/trauma-ml-in-hospital (MIT)

Status: code verified, 12 files readable, 12 matches

[32477] doi:10.3389/fncom.2023.1231924 [paper, repository]

Short-term postsynaptic plasticity facilitates predictive tracking in continuous attractors.

Journal: Frontiers in computational neuroscience

Authors' code: fccaa/cann_stpp_2023 (no license)

Status: code verified, 7 files readable, 2 matches

[32478] doi:10.3389/fneur.2023.1268411 [paper, data]

Sex differences in the neuronal transcriptome and synaptic mitochondrial function in the cerebral cortex of a multiple sclerosis model.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[32479] doi:10.3389/fnhum.2023.1283069 [paper, data]

Individual differences in the language task-evoked and resting-state functional networks.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[32480] doi:10.3390/brainsci13111543 [paper, data]

Language Nativeness Modulates Physiological Responses to Moral vs. Immoral Concepts in Chinese-English Bilinguals: Evidence from Event-Related Potential and Psychophysiological Measures.

Journal: Brain sciences

Status: data only, 1 dataset cited

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