Every paper, by date: page 150

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 150 of 200: 25 September 2023 to 13 September 2023.

Monday, 25 September 2023 (28 papers, 11 on this page)

[33377] doi:10.1186/s12993-023-00219-6 [paper, repository]

Well-being is associated with cortical thickness network topology of human brain.

Journal: Behavioral and brain functions : BBF

Authors' code: zuoxinian/CCS (GPL-2.0)

Status: code verified, 732 files readable, 9 matches

[33378] doi:10.1186/s13023-023-02876-2 [paper, repository]

Integrative rare disease biomedical profile based network supporting drug repurposing or repositioning, a case study of glioblastoma.

Journal: Orphanet journal of rare diseases

Authors' code: ncats/drug_rep (no license)

Status: code verified, 49 files readable, 1 match

[33379] doi:10.12688/hrbopenres.13786.1 [paper, repository]

Rehabilitation needs of people with brain tumours in Ireland: Protocol for a prospective, mixed methods action research study ("Brain-RESTORE").

Journal: HRB open research

Authors' code: figshare 24175476 (CC-BY-4.0)

Status: empty repository

[33380] doi:10.1371/journal.pbio.3002150 [paper, data]

ADAR-mediated regulation of PQM-1 expression in neurons impacts gene expression throughout C. elegans and regulates survival from hypoxia.

Journal: PLoS biology

Status: data only, 1 dataset cited

[33381] doi:10.1371/journal.pbio.3002314 [paper, repository]

Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health and disease.

Journal: PLoS biology

Authors' code: netneurolab/hansen_many_networks (no license), netneurolab/neuromaps (CC-BY-NC-SA-4.0), rmarkello/snfpy (LGPL-3.0), LTS5/cmp (BSD-3-Clause), Zenodo 8250809 (other-open)

Status: code verified, 156 files readable, 18 matches

[33382] doi:10.1371/journal.pgen.1010973 [paper, data]

TDP-43 pathology in Drosophila induces glial-cell type specific toxicity that can be ameliorated by knock-down of SF2/SRSF1.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[33383] doi:10.3389/fcimb.2023.1267629 [paper, data]

Multiomics and bioinformatics identify differentially expressed effectors in the brain of <i>Toxoplasma gondii</i> infected masked palm civet.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[33384] doi:10.3389/fncom.2023.1207361 [paper, repository]

Local minimization of prediction errors drives learning of invariant object representations in a generative network model of visual perception.

Journal: Frontiers in computational neuroscience

Authors' code: matthias-brucklacher/PCInvariance (MIT)

Status: code verified, 16 files readable, 8 matches

[33385] doi:10.3389/fnins.2023.1272834 [paper, data]

Multi-feature fusion learning for Alzheimer's disease prediction using EEG signals in resting state.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[33386] doi:10.3389/fpsyt.2023.1205119 [paper, data]

Dense attention network identifies EEG abnormalities during working memory performance of patients with schizophrenia.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[33387] doi:10.3390/ijms241914522 [paper, data]

Differential Effects of Hypothermia and SZR72 on Cerebral Kynurenine and Kynurenic Acid in a Piglet Model of Hypoxic-Ischemic Encephalopathy.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Sunday, 24 September 2023 (3 papers)

[33388] doi:10.1016/j.neuroimage.2023.120389 [paper]

Optimal parameters for rapid (invisible) frequency tagging using MEG.

Journal: NeuroImage

Status: code on request

[33389] doi:10.1038/s41598-023-43132-8 [paper, repository]

Cognitive load associates prolonged P300 latency during target stimulus processing in individuals with mild cognitive impairment.

Journal: Scientific reports

Authors' code: pdemirayak/Demirayak_2023_P300 (no license)

Status: code verified, 3 files readable, 2 matches

[33390] doi:10.3390/bioengineering10101117 [paper, repository]

Dual-Guided Brain Diffusion Model: Natural Image Reconstruction from Human Visual Stimulus fMRI.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: salesforce/BLIP (BSD-3-Clause)

Status: code verified, 32 files readable, 1 match

Saturday, 23 September 2023 (9 papers)

[33391] doi:10.1007/s00401-023-02632-7 [paper, data]

Transcriptional mutagenesis of α-synuclein caused by DNA oxidation in Parkinson's disease pathogenesis.

Journal: Acta neuropathologica

Status: data only, 3 datasets cited

[33392] doi:10.1016/j.celrep.2023.113168 [paper, repository]

Silc1 long noncoding RNA is an immediate-early gene promoting efficient memory formation.

Journal: Cell reports

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[33393] doi:10.1016/j.dib.2023.109617 [paper, repository]

The Río Hortega University Hospital Glioblastoma dataset: A comprehensive collection of preoperative, early postoperative and recurrence MRI scans (RHUH-GBM).

Journal: Data in brief

Authors' code: smcch/RHUH-GBM-dataset-MRI-preprocessing (no license)

Status: code verified, 4 files readable, 2 matches

[33394] doi:10.1016/j.xpro.2023.102517 [paper]

A protocol for whole-brain Ca&lt;sup&gt;2+&lt;/sup&gt; imaging in Astyanax mexicanus, a model of comparative evolution.

Journal: STAR protocols

Status: code on request

[33395] doi:10.1016/j.xpro.2023.102609 [paper]

Optogenetic induction of alpha-synuclein aggregation in human dopaminergic neurons to model Parkinson's disease pathology.

Journal: STAR protocols

Status: code on request

[33396] doi:10.1038/s41467-023-41384-6 [paper, repository]

Maintenance of pluripotency-like signature in the entire ectoderm leads to neural crest stem cell potential.

Journal: Nature communications

Authors' code: KerosuoLab/Pajanoja_2023 (no license), Zenodo 8234085 (other-open)

Status: code verified, 18 files readable, 7 matches

[33397] doi:10.1038/s41467-023-41652-5 [paper, repository]

Non-uniform temporal scaling of developmental processes in the mammalian cortex.

Journal: Nature communications

Authors' code: fenlon-suarez-lab/histology-analyses (no license)

Status: code verified, 4 files readable, 1 match

[33398] doi:10.1038/s41598-023-43227-2 [paper, data]

The social relevance and the temporal constraints of motor resonance in humans.

Journal: Scientific reports

Status: data only, 1 dataset cited

[33399] doi:10.3390/s23198039 [paper, data]

A Deep Learning Model for Correlation Analysis between Electroencephalography Signal and Speech Stimuli.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 22 September 2023 (26 papers)

[33400] doi:10.1007/s10571-023-01405-w [paper, data]

Candidate Key Proteins in Tinnitus: A Bioinformatic Study of Synaptic Transmission in Spiral Ganglion Neurons.

Journal: Cellular and molecular neurobiology

Status: data only, 1 dataset cited

[33401] doi:10.1016/j.cub.2023.08.085 [paper, data]

The locus coeruleus directs sensory-motor reflex amplitude across environmental contexts.

Journal: Current biology : CB

Status: code on request, 1 dataset cited

[33402] doi:10.1016/j.isci.2023.108002 [paper, repository]

Development and cadherin-mediated control of prefrontal corticostriatal projections in mice.

Journal: iScience

Authors' code: registry.opendata.aws/janelia-mouselight (no license), deannabenson/HotspotAnalysis (no license)

Status: code verified, 8 files readable

[33403] doi:10.1016/j.patter.2023.100845 [paper, repository]

Compressive sensing of functional connectivity maps from patterned optogenetic stimulation of neuronal ensembles.

Journal: Patterns (New York, N.Y.)

Authors' code: phil-navarro/CoCoMap (MIT), Zenodo 7798536 (other-open)

Status: code verified, 20 files readable, 6 matches

[33404] doi:10.1016/j.psj.2023.103136 [paper, data]

Transcriptomics analysis unveils key potential genes associated with brain development and feeding behavior in the hypothalamus of L-citrulline-fed broiler chickens.

Journal: Poultry science

Status: data only, 1 dataset cited

[33405] doi:10.1038/s41467-023-41058-3 [paper, repository]

Increasing associative plasticity in temporo-occipital back-projections improves visual perception of emotions.

Journal: Nature communications

Authors' code: OSF yqbsj (no license)

Status: code verified

[33406] doi:10.1038/s41467-023-41492-3 [paper, repository]

A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia.

Journal: Nature communications

Authors' code: AnnaLaddach/TrajectoryGeometry (other), AnnaLaddach/ABranchingModelOfENSDevelopment (MIT)

Status: code verified, 12 files readable, 4 matches

[33407] doi:10.1038/s41467-023-41581-3 [paper, repository]

Distinct sub-second dopamine signaling in dorsolateral striatum measured by a genetically-encoded fluorescent sensor.

Journal: Nature communications

Authors' code: Jeongoenlee/dopamine (no license)

Status: code verified, 7 files readable

[33408] doi:10.1038/s41467-023-41584-0 [paper, repository]

High-dimensional topographic organization of visual features in the primate temporal lobe.

Journal: Nature communications

Authors' code: Zenodo 8053796 (CC-BY-4.0)

Status: code verified, 1 file readable

[33409] doi:10.1038/s41467-023-41603-0 [paper, data]

C9orf72-ALS human iPSC microglia are pro-inflammatory and toxic to co-cultured motor neurons via MMP9.

Journal: Nature communications

Status: data only, 1 dataset cited

[33410] doi:10.1038/s41467-023-41666-z [paper, repository]

Epigenomic analysis of formalin-fixed paraffin-embedded samples by CUT&Tag.

Journal: Nature communications

Authors' code: Henikoff/FFPE (no license)

Status: code verified, 1 file readable

[33411] doi:10.1038/s41598-023-41549-9 [paper, repository]

Driving risk cognition of passengers in highly automated driving based on the prefrontal cortex activity via fNIRS.

Journal: Scientific reports

Authors' code: SOTIF-AVLab/fNIRS (no license)

Status: code verified, 45 files readable, 4 matches

[33412] doi:10.1038/s41598-023-42116-y [paper, data]

The relation between implicit statistical learning and proactivity as revealed by EEG.

Journal: Scientific reports

Status: data only, 1 dataset cited

[33413] doi:10.1038/s41598-023-43027-8 [paper]

Age-related increases in right hemisphere support for prosodic processing in children.

Journal: Scientific reports

Status: code on request

[33414] doi:10.1126/sciadv.adh1328 [paper, data]

Brain-machine interface learning is facilitated by specific patterning of distributed cortical feedback.

Journal: Science advances

Status: data only, 1 dataset cited

[33415] doi:10.1126/sciadv.adi9327 [paper, repository]

Deep learning enabled fast 3D brain MRI at 0.055 tesla.

Journal: Science advances

Authors' code: bispmri/ultra-low-field-mri-scanner (CC0-1.0), Zenodo 8260397 (CC-BY-4.0)

Status: code verified, 14 files readable, 1 match

[33416] doi:10.1186/s12944-023-01918-9 [paper, data]

Identification of key lipid metabolism-related genes in Alzheimer's disease.

Journal: Lipids in health and disease

Status: data only, 1 dataset cited

[33417] doi:10.1186/s12967-023-04461-4 [paper]

FTO-targeted siRNA delivery by MSC-derived exosomes synergistically alleviates dopaminergic neuronal death in Parkinson's disease via m6A-dependent regulation of ATM mRNA.

Journal: Journal of translational medicine

Status: data only

[33418] doi:10.1186/s13195-023-01302-w [paper, data]

Head-to-head comparison between plasma p-tau217 and flortaucipir-PET in amyloid-positive patients with cognitive impairment.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[33419] doi:10.1371/journal.pcbi.1011406 [paper, repository]

Simulation-based inference for efficient identification of generative models in computational connectomics.

Journal: PLoS computational biology

Authors' code: mackelab/sbi-forconnectomics (MIT), mackelab/sbi (Apache-2.0)

Status: code verified, 307 files readable, 15 matches

[33420] doi:10.1371/journal.pcbi.1011486 [paper, repository]

Generalizing biological surround suppression based on center surround similarity via deep neural network models.

Journal: PLoS computational biology

Authors' code: gin.g-node.org/xupan/cnn_surround_effects_visualization (no license)

Status: code verified

[33421] doi:10.3171/2023.7.jns23122 [paper, repository]

Single-cell analysis of 5-aminolevulinic acid intraoperative labeling specificity for glioblastoma.

Journal: Journal of neurosurgery

Authors' code: simslab/SCOPEseq2 (no license), simslab/cluster_diffex2018 (MIT)

Status: code verified, 20 files readable, 1 match

[33422] doi:10.3389/fmicb.2023.1249289 [paper]

A novel oncolytic virus-based biomarker participates in prognosis and tumor immune infiltration of glioma.

Journal: Frontiers in microbiology

Status: data only

[33423] doi:10.3389/fnmol.2023.1230942 [paper, data]

Brain cell-specific origin of circulating microRNA biomarkers in experimental temporal lobe epilepsy.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[33424] doi:10.3390/cancers15194686 [paper, repository]

The Role of the Dysregulation of Long Non-Coding and Circular RNA Expression in Medulloblastoma: A Systematic Review.

Journal: Cancers

Authors' code: lncipedia.org (no license)

Status: dead link

[33425] doi:10.7554/elife.85907 [paper, repository]

Diversity and evolution of cerebellar folding in mammals.

Journal: eLife

Authors' code: neuroanatomy/comp-cb-folding (Apache-2.0)

Status: code verified, 22 files readable, 10 matches

Thursday, 21 September 2023 (28 papers)

[33426] doi:10.1007/s10278-023-00854-5 [paper]

DMCA-GAN: Dual Multilevel Constrained Attention GAN for MRI-Based Hippocampus Segmentation.

Journal: Journal of digital imaging

Status: code on request

[33427] doi:10.1016/j.isci.2023.108001 [paper, repository]

Tonic activin signaling shapes cellular and synaptic properties of CA1 neurons mainly in dorsal hippocampus.

Journal: iScience

Authors' code: janadahlmanns/transporter_density (GPL-3.0)

Status: code verified, 4 files readable, 1 match

[33428] doi:10.1016/j.isci.2023.108005 [paper, repository]

Genome-wide association study of hippocampal blood-oxygen-level-dependent-cerebral blood flow correlation in Chinese Han population.

Journal: iScience

Authors' code: JonJala/mtag (GPL-3.0)

Status: code verified, 25 files readable, 1 match

[33429] doi:10.1016/j.isci.2023.108010 [paper, data]

Heterogeneity of perivascular astrocyte endfeet depending on vascular regions in the mouse brain.

Journal: iScience

Status: code on request, 1 dataset cited

[33430] doi:10.1016/j.xpro.2023.102586 [paper, repository]

In vivo functional brain mapping using ultra-high-field fMRI in awake common marmosets.

Journal: STAR protocols

Authors' code: Zenodo 7789270 (CC-BY-4.0)

Status: code verified, 12 files readable, 3 matches

[33431] doi:10.1038/s41467-023-41557-3 [paper, repository]

Ultrasound trapping and navigation of microrobots in the mouse brain vasculature.

Journal: Nature communications

Authors' code: Zenodo 8279585 (CC-BY-4.0)

Status: code verified, 3 files readable

[33432] doi:10.1038/s41467-023-41645-4 [paper, repository]

DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas.

Journal: Nature communications

Authors' code: PolarBean/DeepSlice (MIT), Zenodo 8221471 (other-open), Zenodo 8211292 (MIT)

Status: code verified, 88 files readable, 2 matches

[33433] doi:10.1038/s41537-023-00395-4 [paper]

Graph-based analysis of EEG for schizotypy classification applying flicker Ganzfeld stimulation.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[33434] doi:10.1038/s41593-023-01430-4 [paper, repository]

Somatostatin neurons in prefrontal cortex initiate sleep-preparatory behavior and sleep via the preoptic and lateral hypothalamus.

Journal: Nature neuroscience

Authors' code: doi:10.5281/zendo.8287112 (no license), Zenodo 8287079 (CC-BY-4.0)

Status: code verified, 15 files readable

[33435] doi:10.1038/s41597-023-02527-y [paper, data]

The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain.

Journal: Scientific data

Status: data only, 11 datasets cited

[33436] doi:10.1038/s41598-023-42429-y [paper, repository]

A cross-sectional case-control study on the structural connectome in recovered hospitalized COVID-19 patients.

Journal: Scientific reports

Authors' code: treanus/KUL_NIS (MPL-2.0)

Status: code verified, 59 files readable, 3 matches

[33437] doi:10.1038/s41598-023-42533-z [paper, repository]

A low dimensional embedding of brain dynamics enhances diagnostic accuracy and behavioral prediction in stroke.

Journal: Scientific reports

Authors' code: SebastianIdesis/Latent_Space_Stroke-2023- (no license)

Status: code verified, 13 files readable, 2 matches

[33438] doi:10.1038/s41598-023-42883-8 [paper, repository]

Defining and identifying cell sub-crosstalk pairs for characterizing cell-cell communication patterns.

Journal: Scientific reports

Authors' code: GaoLabXDU/cell-sub-crosstalk-pair (no license), CaiGroup/seqFISH-PLUS (no license)

Status: code verified, 27 files readable, 3 matches

[33439] doi:10.1073/pnas.2221415120 [paper, repository]

Reward expectations direct learning and drive operant matching in <i>Drosophila</i>.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7986372 (other-open), rajagopalana/turnerlabcode (no license)

Status: code verified, 176 files readable, 4 matches

[33440] doi:10.1073/pnas.2305853120 [paper, repository]

Common population codes produce extremely nonlinear neural manifolds.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: chaudhurilab/manifold-lin-dim (GPL-3.0)

Status: code verified, 18 files readable, 4 matches

[33441] doi:10.1080/20008066.2023.2257435 [paper, data]

Neurofeedback for post-traumatic stress disorder: systematic review and meta-analysis of clinical and neurophysiological outcomes.

Journal: European journal of psychotraumatology

Status: data only, 2 datasets cited

[33442] doi:10.1084/jem.20212476 [paper, data]

Maternal diet during early gestation influences postnatal taste activity-dependent pruning by microglia.

Journal: The Journal of experimental medicine

Status: data only, 1 dataset cited

[33443] doi:10.1093/jrsssb/qkad104 [paper, repository]

Spatial confidence regions for combinations of excursion sets in image analysis.

Journal: Journal of the Royal Statistical Society. Series B, Statistical methodology

Authors' code: TomMaullin/ConfSets (no license)

Status: code verified, 28 files readable, 3 matches

[33444] doi:10.1155/2023/5038317 [paper, repository]

Mapping the Landscape of Magnetic Field Effects on Neural Regeneration and Repair: A Combined Systematic Review, Mathematical Model, and Meta-Analysis.

Journal: Journal of tissue engineering and regenerative medicine

Authors' code: supp:PMC11918650/5038317.f1.zip (no license)

Status: empty repository

[33445] doi:10.1186/s12911-023-02292-3 [paper, repository]

SelANet: decision-assisting selective sleep apnea detection based on confidence score.

Journal: BMC medical informatics and decision making

Authors' code: hbumjj/SelANet (no license)

Status: code verified, 7 files readable, 1 match

[33446] doi:10.1186/s12967-023-04516-6 [paper]

Integrating single-nucleus sequence profiling to reveal the transcriptional dynamics of Alzheimer's disease, Parkinson's disease, and multiple sclerosis.

Journal: Journal of translational medicine

Status: data only

[33447] doi:10.1371/journal.pbio.3002280 [paper, repository]

Inhibitory feedback from the motor circuit gates mechanosensory processing in Caenorhabditis elegans.

Journal: PLoS biology

Authors' code: leiferlab/kumar-sensorimotor-integration (GPL-3.0)

Status: code verified, 257 files readable

[33448] doi:10.1371/journal.pgen.1010962 [paper, data]

Neuronal expression in Drosophila of an evolutionarily conserved metallophosphodiesterase reveals pleiotropic roles in longevity and odorant response.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[33449] doi:10.1371/journal.pone.0291754 [paper]

Effect of sacubitril/valsartan on brain natriuretic peptide level and prognosis of acute cerebral infarction.

Journal: PloS one

Status: data only

[33450] doi:10.3389/fnins.2023.1251677 [paper, data]

Assigning channel weights using an attention mechanism: an EEG interpolation algorithm.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[33451] doi:10.3390/biomimetics8050445 [paper, repository]

Active Vision in Binocular Depth Estimation: A Top-Down Perspective.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: priorelli/active-vision (no license)

Status: code verified, 13 files readable

[33452] doi:10.3390/ijerph20186793 [paper, repository]

Assessment of Electrical Brain Activity of Healthy Volunteers Exposed to 3.5 GHz of 5G Signals within Environmental Levels: A Controlled-Randomised Study.

Journal: International journal of environmental research and public health

Authors' code: lydia.yahia/mega_stats_package (no license)

Status: dead link

[33453] doi:10.7554/elife.83223 [paper, repository]

Dynamic top-down biasing implements rapid adaptive changes to individual movements.

Journal: eLife

Authors' code: doi:10.5061/dryad.n8pk0p30c (no license)

Status: dead link

Wednesday, 20 September 2023 (30 papers)

[33454] doi:10.1007/s00464-023-10409-y [paper, data]

Performance and learning rate prediction models development in FLS and RAS surgical tasks using electroencephalogram and eye gaze data and machine learning.

Journal: Surgical endoscopy

Status: data only, 1 dataset cited

[33455] doi:10.1016/j.celrep.2023.113125 [paper]

An amygdala-to-cingulate cortex circuit for conflicting choices in chronic pain.

Journal: Cell reports

Status: code on request

[33456] doi:10.1016/j.devcel.2023.08.028 [paper, repository]

Palbociclib releases the latent differentiation capacity of neuroblastoma cells.

Journal: Developmental cell

Authors' code: Zenodo 8221346 (other-open), biomystery/ROSE_young_lab (MIT), Ensembl/WiggleTools (Apache-2.0), slgillen/ferguson_and_gillen_et_al_developmental_cell_2023 (no license)

Status: code verified, 121 files readable, 17 matches

[33457] doi:10.1016/j.isci.2023.107963 [paper, repository]

Natural brain state change with E/I balance shifting toward inhibition is associated with vigilance impairment.

Journal: iScience

Authors' code: figshare 23514246 (CC-BY-4.0)

Status: code verified, 12 files readable

[33458] doi:10.1016/j.isci.2023.107965 [paper, repository]

Beyond sense-specific processing: decoding texture in the brain from touch and sonified movement.

Journal: iScience

Authors' code: centre-irm-int/gt-mvpa-nilearn (no license)

Status: code verified, 3 files readable, 2 matches

[33459] doi:10.1016/j.neuroimage.2023.120383 [paper, repository]

ALE meta-analyses of voxel-based morphometry studies: Parameter validation via large-scale simulations.

Journal: NeuroImage

Authors' code: LenFrahm/pyALE (no license), LenFrahm/VBM_ALE (no license)

Status: code verified, 22 files readable

[33460] doi:10.1038/s41467-023-41641-8 [paper, repository]

Sensory cortex plasticity supports auditory social learning.

Journal: Nature communications

Authors' code: nyu.app.box.com/folder/190089728369 (no license)

Status: dead link

[33461] doi:10.1038/s41586-023-06538-y [paper, data]

The oldest three-dimensionally preserved vertebrate neurocranium.

Journal: Nature

Status: data only, 1 dataset cited

[33462] doi:10.1038/s41586-023-06541-3 [paper, repository]

Cingulate dynamics track depression recovery with deep brain stimulation.

Journal: Nature

Authors' code: dabi.loni.usc.edu/dsi/1uh3ns103550 (no license)

Status: code verified

[33463] doi:10.1038/s41586-023-06556-w [paper, repository]

Cryo-EM structures reveal native GABA&lt;sub&gt;A&lt;/sub&gt; receptor assemblies and pharmacology.

Journal: Nature

Authors' code: Zenodo 8161179 (CC-BY-4.0)

Status: code verified, 2 files readable

[33464] doi:10.1038/s41586-023-06570-y [paper, repository]

Transcriptional linkage analysis with in vivo AAV-Perturb-seq.

Journal: Nature

Authors' code: shendurelab/single-cell-ko-screens (no license), plattlab/AAV-Perturb-seq (no license)

Status: code verified, 35 files readable, 13 matches

[33465] doi:10.1038/s41597-023-02552-x [paper, repository]

Single-nucleus transcriptomic mapping of blast-induced traumatic brain injury in mice hippocampus.

Journal: Scientific data

Authors' code: figshare 22659415 (CC-BY-4.0), figshare 22659406 (CC-BY-4.0), s-andrews/FastQC (GPL-3.0), 10XGenomics/cellranger (MIT)

Status: code verified, 951 files readable, 4 matches

[33466] doi:10.1038/s41598-023-42048-7 [paper, repository]

Raidionics: an open software for pre- and postoperative central nervous system tumor segmentation and standardized reporting.

Journal: Scientific reports

Authors' code: raidionics/Raidionics (BSD-2-Clause), Zenodo 7831244 (other-open), andreped/gradientaccumulator (MIT)

Status: code verified, 179 files readable, 7 matches

[33467] doi:10.1038/s41598-023-42168-0 [paper, repository]

Multiple neuron clusters on Micro-Electrode Arrays as an in vitro model of brain network.

Journal: Scientific reports

Authors' code: Zenodo 8359135 (other-open), screenneuropharm/4clusters (MIT)

Status: code verified, 34 files readable

[33468] doi:10.1038/s41598-023-42414-5 [paper]

Predicting 'Brainage' in late childhood to adolescence (6-17yrs) using structural MRI, morphometric similarity, and machine learning.

Journal: Scientific reports

Status: code on request

[33469] doi:10.1038/s41598-023-42818-3 [paper, data]

Comparison of the prediction accuracy of machine learning algorithms in crosslinguistic vowel classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[33470] doi:10.1038/s41598-023-42882-9 [paper]

Estimation of cumulative amplitude distributions of miniature postsynaptic currents allows characterising their multimodality, quantal size and variability.

Journal: Scientific reports

Status: code on request

[33471] doi:10.1038/s41598-023-42891-8 [paper, repository]

Natural scene reconstruction from fMRI signals using generative latent diffusion.

Journal: Scientific reports

Authors' code: ozcelikfu/brain-diffuser (MIT)

Status: code verified, 150 files readable, 6 matches

[33472] doi:10.1073/pnas.2218173120 [paper, repository]

Brain-inspired neural circuit evolution for spiking neural networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: BrainCog-X/Brain-Cog (Apache-2.0)

Status: code verified, 545 files readable, 2 matches

[33473] doi:10.1088/1741-2552/ace8be [paper, repository]

Direct speech reconstruction from sensorimotor brain activity with optimized deep learning models.

Journal: Journal of neural engineering

Authors' code: lutzroeder/netron (MIT), kan-bayashi/ParallelWaveGAN (MIT), wiseman/py-webrtcvad (MIT), mpariente/pystoi (MIT), Immiora/word_decoding_HD_ECoG (no license)

Status: code verified, 560 files readable, 28 matches

[33474] doi:10.1101/gr.277881.123 [paper, repository]

Single-nucleus transcriptomic mapping uncovers targets for traumatic brain injury.

Journal: Genome research

Authors' code: limanrui/scseq (no license)

Status: empty repository, 1 file readable

[33475] doi:10.1162/opmi_a_00101 [paper, repository]

Information-Theoretic Neural Decoding Reproduces Several Laws of Human Behavior.

Journal: Open mind : discoveries in cognitive science

Authors' code: tom-christie/transmit (MIT)

Status: code verified, 25 files readable

[33476] doi:10.1186/s12575-023-00218-x [paper, data]

Comparison of two protocols for the generation of iPSC-derived human astrocytes.

Journal: Biological procedures online

Status: data only, 1 dataset cited

[33477] doi:10.1186/s12864-023-09676-9 [paper, repository]

Transmembrane protein 184B (TMEM184B) promotes expression of synaptic gene networks in the mouse hippocampus.

Journal: BMC genomics

Authors' code: marthab1/image_analysis (no license), eriklarsen4/ggplot-scripts (no license)

Status: code verified, 10 files readable

[33478] doi:10.1371/journal.pcbi.1011464 [paper, repository]

Mechanistic multiscale modelling of energy metabolism in human astrocytes reveals the impact of morphology changes in Alzheimer's Disease.

Journal: PLoS computational biology

Authors' code: gitlab.lcsb.uni.lu/ics-lcsb/energy-metabolism-model-astrocyte (no license)

Status: dead link

[33479] doi:10.1371/journal.pone.0290715 [paper, repository]

Multi-compartment head modeling in EEG: Unstructured boundary-fitted tetra meshing with subcortical structures.

Journal: PloS one

Authors' code: Zenodo 3838700 (GPL-3.0), sampsapursiainen/zeffiro_interface (GPL-3.0)

Status: code verified, 1,173 files readable, 13 matches

[33480] doi:10.3389/fnmol.2023.1237874 [paper, repository]

Analyzing alternative splicing in Alzheimer's disease postmortem brain: a cell-level perspective.

Journal: Frontiers in molecular neuroscience

Authors' code: figshare 23522391 (CC-BY-4.0), MEFarhadieh/SCADSplice (no license)

Status: code verified, 17 files readable, 16 matches

[33481] doi:10.3390/brainsci13091347 [paper, repository]

The Roles of Potassium and Calcium Currents in the Bistable Firing Transition.

Journal: Brain sciences

Authors' code: FernandoSBorges/BistabilityHH (no license)

Status: code verified, 64 files readable

[33482] doi:10.3390/cells12182320 [paper, repository]

Effect of Acute Enriched Environment Exposure on Brain Oscillations and Activation of the Translation Initiation Factor 4E-BPs at Synapses across Wakefulness and Sleep in Rats.

Journal: Cells

Authors' code: ubartsch/sleepwalker (MIT)

Status: code verified, 93 files readable, 3 matches

[33483] doi:10.3390/diagnostics13183007 [paper, data]

A Review of Recent Advances in Brain Tumor Diagnosis Based on AI-Based Classification.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Tuesday, 19 September 2023 (30 papers)

[33484] doi:10.1007/s00406-023-01691-x [paper, repository]

Effects of current alcohol use on brain volume among older adults in the Gothenburg H70 Birth Cohort study 2014-16.

Journal: European archives of psychiatry and clinical neuroscience

Authors' code: surfer.nmr.mgh.harvard.edu (no license)

Status: code verified

[33485] doi:10.1016/j.cell.2023.08.027 [paper, repository]

Stepwise emergence of the neuronal gene expression program in early animal evolution.

Journal: Cell

Authors' code: xgrau/placozoa-cell-type-evolution-code (no license), alexdobin/STAR (MIT), macs3-project/MACS (BSD-3-Clause), lh3/bwa (GPL-3.0), deeptools/deepTools (MIT), pgfoster/p4-phylogenetics (GPL-2.0), bayesiancook/pbmpi (GPL-2.0), smirarab/ASTRAL (Apache-2.0), JLSteenwyk/ClipKIT (MIT), bbuchfink/diamond (GPL-3.0), aertslab/AUCell (no license), atarashansky/SAMap (MIT), rderelle/Broccoli (GPL-3.0)

Status: code verified, 1,914 files readable, 24 matches

[33486] doi:10.1016/j.celrep.2023.113133 [paper, repository]

Top-down input modulates visual context processing through an interneuron-specific circuit.

Journal: Cell reports

Authors' code: Zenodo 8335415 (CC-BY-4.0)

Status: code verified, 12 files readable, 3 matches

[33487] doi:10.1016/j.celrep.2023.113141 [paper]

Mast cell deficiency improves cognition and enhances disease-associated microglia in 5XFAD mice.

Journal: Cell reports

Status: code on request

[33488] doi:10.1016/j.celrep.2023.113146 [paper, repository]

RBL2-E2F-GCN5 guide cell fate decisions during tissue specification by regulating cell-cycle-dependent fluctuations of non-cell-autonomous signaling.

Journal: Cell reports

Authors' code: macs3-project/MACS (BSD-3-Clause), alexdobin/STAR (MIT), lh3/bwa (GPL-3.0)

Status: code verified, 613 files readable, 1 match

[33489] doi:10.1016/j.celrep.2023.113151 [paper, repository]

Neuronal activation of G&lt;sub&gt;αq&lt;/sub&gt; EGL-30/GNAQ late in life rejuvenates cognition across species.

Journal: Cell reports

Authors' code: emc2cube/Bioinformatics (EUPL-1.2)

Status: code verified, 10 files readable, 1 match

[33490] doi:10.1016/j.celrep.2023.113152 [paper]

Stochastic RNA editing of the Complexin C-terminus within single neurons regulates neurotransmitter release.

Journal: Cell reports

Status: code on request

[33491] doi:10.1016/j.crmeth.2023.100593 [paper, repository]

A fully automated FAIMS-DIA mass spectrometry-based proteomic pipeline.

Journal: Cell reports methods

Authors' code: vdemichev/DiaNN (other)

Status: code verified, 441 files readable, 4 matches

[33492] doi:10.1016/j.cub.2023.08.072 [paper, repository]

Olfactory bulb activity shapes the development of entorhinal-hippocampal coupling and associated cognitive abilities.

Journal: Current biology : CB

Authors' code: OpatzLab/HanganuOpatzToolbox (GPL-3.0)

Status: code verified, 596 files readable, 5 matches

[33493] doi:10.1016/j.isci.2023.107958 [paper, repository]

Identification of region-specific splicing QTLs in human hippocampal tissue and its distinctive role in brain disorders.

Journal: iScience

Authors' code: OpenGene/fastp (MIT), alexdobin/STAR (MIT), bmvdgeijn/WASP (Apache-2.0), davidaknowles/leafcutter (Apache-2.0), francois-a/fastqtl (GPL-3.0), arq5x/bedtools2 (MIT), bulik/ldsc (GPL-3.0), gusevlab/fusion_twas (GPL-3.0), NathanSkene/EWCE (no license)

Status: code verified, 1,464 files readable, 4 matches

[33494] doi:10.1016/j.isci.2023.107973 [paper]

Total sleep deprivation reduces the table tennis anticipation performance of young men: A functional magnetic resonance imaging study.

Journal: iScience

Status: code on request

[33495] doi:10.1016/j.isci.2023.107988 [paper, data]

Nonadditive integration of visual information in ensemble processing.

Journal: iScience

Status: data only, 1 dataset cited

[33496] doi:10.1016/j.xpro.2023.102570 [paper, repository]

Simultaneous electrophysiology and optogenetic perturbation of the same neurons in chronically implanted animals using μLED silicon probes.

Journal: STAR protocols

Authors' code: Zenodo 8209229 (other-open), Zenodo 8209373 (other-open), nkinsky/3d_print_designs (no license), nkinsky/osc1lite (MIT)

Status: code verified, 17 files readable, 2 matches

[33497] doi:10.1021/acschemneuro.3c00431 [paper, data]

Virtual Screening-Accelerated Discovery of a Phosphodiesterase 9 Inhibitor with Neuroprotective Effects in the Kainate Toxicity In Vitro Model.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[33498] doi:10.1038/s41467-023-41499-w [paper, repository]

Network controllability of structural connectomes in the neonatal brain.

Journal: Nature communications

Authors' code: brain.labsolver.org/hcp_d2.html (no license), complexsystemsupenn.com/codedata (no license), complexsystemsupenn.com/s/controllability_code-smb8.zip (no license), ursbraun/network_control_and_dopamine (no license), huiliii/infant_control (no license)

Status: code verified, 16 files readable, 1 match

[33499] doi:10.1038/s41531-023-00579-w [paper, repository]

Cortical Lewy body injections induce long-distance pathogenic alterations in the non-human primate brain.

Journal: NPJ Parkinson's disease

Authors' code: SoriaFN (no license)

Status: code verified

[33500] doi:10.1038/s41598-023-42578-0 [paper, repository]

Recent natural selection conferred protection against schizophrenia by non-antagonistic pleiotropy.

Journal: Scientific reports

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 1 match

[33501] doi:10.1093/pnasnexus/pgad303 [paper, repository]

Effects of chronic caffeine on patterns of brain blood flow and behavior throughout the sleep-wake cycle in freely behaving mice.

Journal: PNAS nexus

Authors' code: dandi: (no license)

Status: code verified

[33502] doi:10.1111/add.16330 [paper, repository]

Brain structural covariance network features are robust markers of early heavy alcohol use.

Journal: Addiction (Abingdon, England)

Authors' code: frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 7 files readable

[33503] doi:10.1186/s12859-023-05476-w [paper, data]

Bulk brain tissue cell-type deconvolution with bias correction for single-nuclei RNA sequencing data using DeTREM.

Journal: BMC bioinformatics

Status: data only, 1 dataset cited

[33504] doi:10.1186/s12864-023-09672-z [paper, repository]

Identification of copy number variation in Tibetan sheep using whole genome resequencing reveals evidence of genomic selection.

Journal: BMC genomics

Authors' code: bjtrost/TCAG-WGS-CNV-workflow (MIT)

Status: code verified, 35 files readable, 1 match

[33505] doi:10.1186/s13024-023-00650-3 [paper, data]

The major TMEM106B dementia risk allele affects TMEM106B protein levels, fibril formation, and myelin lipid homeostasis in the ageing human hippocampus.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[33506] doi:10.1186/s13046-023-02816-9 [paper, data]

CircRNF10 triggers a positive feedback loop to facilitate progression of glioblastoma via redeploying the ferroptosis defense in GSCs.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 3 datasets cited

[33507] doi:10.1523/eneuro.0127-23.2023 [paper]

Similarities and Distinctions between Cortical Neural Substrates That Underlie Generation of Malevolent Creative Ideas.

Journal: eNeuro

Status: code on request

[33508] doi:10.3389/fnhum.2023.1207364 [paper, data]

Visualizing risky situations induces a stronger neural response in brain areas associated with mental imagery and emotions than visualizing non-risky situations.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[33509] doi:10.3389/fnhum.2023.1223774 [paper, repository]

CLET: Computation of Latencies in Event-related potential Triggers using photodiode on virtual reality apparatuses.

Journal: Frontiers in human neuroscience

Authors' code: BiomedicalEngineeringTechies/CLET (no license)

Status: code verified, 4 files readable, 6 matches

[33510] doi:10.3389/fphar.2023.1242109 [paper, data]

Methamphetamine exposure drives cell cycle exit and aberrant differentiation in rat hippocampal-derived neurospheres.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[33511] doi:10.3390/v15091948 [paper, data]

Novel RNA-Seq Signatures Post-Methamphetamine and Oxycodone Use in a Model of HIV-Associated Neurocognitive Disorders.

Journal: Viruses

Status: data only, 1 dataset cited

[33512] doi:10.34133/research.0216 [paper, repository]

Sleep Promotion by 3-Hydroxy-4-Iminobutyric Acid in Walnut <i>Diaphragma juglandis Fructus</i>.

Journal: Research (Washington, D.C.)

Authors' code: JianJi2016/HIBA_brain (MIT)

Status: code verified, 2 files readable

[33513] doi:10.3758/s13415-023-01123-2 [paper]

Subjective and neural reactivity during savoring and rumination.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

Monday, 18 September 2023 (20 papers)

[33514] doi:10.1002/hbm.26482 [paper, data]

A multimodal cortical network of sensory expectation violation revealed by fMRI.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[33515] doi:10.1007/s11357-023-00919-x [paper, data]

Transcriptomics and biochemical evidence of trigonelline ameliorating learning and memory decline in the senescence-accelerated mouse prone 8 (SAMP8) model by suppressing proinflammatory cytokines and elevating neurotransmitter release.

Journal: GeroScience

Status: data only, 1 dataset cited

[33516] doi:10.1016/j.dib.2023.109594 [paper, data]

Whole genome transcriptome data from the WT cortex and hippocampus of female and male control and APP/PS1 Alzheimer's disease mice.

Journal: Data in brief

Status: data only, 3 datasets cited

[33517] doi:10.1016/j.neuron.2023.08.024 [paper, repository]

A view-based decision mechanism for rewards in the primate amygdala.

Journal: Neuron

Authors' code: fgrabenhorst/grabenhorst_amygdalachoice_neuron2023 (no license), Zenodo 8268856 (other-open)

Status: code verified, 2 files readable, 1 match

[33518] doi:10.1016/j.nicl.2023.103511 [paper, data]

Stroke lesion size - Still a useful biomarker for stroke severity and outcome in times of high-dimensional models.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[33519] doi:10.1038/s41467-023-40348-0 [paper, repository]

Circular RNAs in the human brain are tailored to neuron identity and neuropsychiatric disease.

Journal: Nature communications

Authors' code: sterding/circRNA (no license)

Status: code verified, 49 files readable, 19 matches

[33520] doi:10.1038/s41467-023-41419-y [paper, repository]

Light-enhanced molecular polarity enabling multispectral color-cognitive memristor for neuromorphic visual system.

Journal: Nature communications

Authors' code: neurosim/DNN_NeuroSim_V2.0 (no license)

Status: code verified, 98 files readable

[33521] doi:10.1038/s41467-023-41553-7 [paper, repository]

A GPU-based computational framework that bridges neuron simulation and artificial intelligence.

Journal: Nature communications

Authors' code: BlueBrain/CoreNeuron (BSD-3-Clause), pkuzyc/DeepDendrite (Apache-2.0), zalandoresearch/fashion-mnist (MIT)

Status: code verified, 1,886 files readable, 4 matches

[33522] doi:10.1038/s42003-023-05328-6 [paper, repository]

Positive and biphasic extracellular waveforms correspond to return currents and axonal spikes.

Journal: Communications biology

Authors' code: EranStarkLab/NonNegativeSpikes (no license)

Status: code verified, 2 files readable, 1 match

[33523] doi:10.1038/s43587-023-00478-y [paper, data]

DOPA decarboxylase is an emerging biomarker for Parkinsonian disorders including preclinical Lewy body disease.

Journal: Nature aging

Status: data only, 1 dataset cited

[33524] doi:10.1073/pnas.2221553120 [paper, data]

Neuronal MML-1/MXL-2 regulates systemic aging via glutamate transporter and cell nonautonomous autophagic and peroxidase activity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[33525] doi:10.1080/07853890.2023.2208372 [paper, data]

Myalgic encephalomyelitis/chronic fatigue syndrome and fibromyalgia are indistinguishable by their cerebrospinal fluid proteomes.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[33526] doi:10.1111/acel.13995 [paper, repository]

Association of biological age with health outcomes and its modifiable factors.

Journal: Aging cell

Authors' code: Microsoft/LightGBM (MIT), saigegit.github.io/saige-doc (no license), bulik/ldsc (GPL-3.0), YuLab-SMU/clusterProfiler (no license), chr1swallace/coloc (no license)

Status: code verified, 415 files readable, 5 matches

[33527] doi:10.1162/nol_a_00114 [paper, data]

Modality-Specificity of the Neural Correlates of Linguistic and Non-Linguistic Demand.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[33528] doi:10.1371/journal.pgen.1010938 [paper, data]

Neuronal mTORC1 inhibition promotes longevity without suppressing anabolic growth and reproduction in C. elegans.

Journal: PLoS genetics

Status: data only, 6 datasets cited

[33529] doi:10.1371/journal.pone.0289433 [paper, data]

Logical gates in ensembles of proteinoid microspheres.

Journal: PloS one

Status: data only, 1 dataset cited

[33530] doi:10.3389/fnins.2023.1184990 [paper, repository]

Utilizing risk-controlling prediction calibration to reduce false alarm rates in epileptic seizure prediction.

Journal: Frontiers in neuroscience

Authors' code: yyLabPhysAI/TS-LTT (MIT)

Status: code verified, 11 files readable, 3 matches

[33531] doi:10.3390/biomedicines11092564 [paper, data]

Amyloid-Beta Peptides Trigger Premature Functional and Gene Expression Alterations in Human-Induced Neurons.

Journal: Biomedicines

Status: data only, 1 dataset cited

[33532] doi:10.3390/cancers15184619 [paper, data]

Repurposing Clemastine to Target Glioblastoma Cell Stemness.

Journal: Cancers

Status: code on request, 1 dataset cited

[33533] doi:10.7554/elife.89054 [paper, repository]

Broca's area, variation and taxic diversity in early <i>Homo</i> from Koobi Fora (Kenya).

Journal: eLife

Authors' code: jeandumoncel/curve-editor (GPL-3.0)

Status: code verified, 10 files readable

Sunday, 17 September 2023 (3 papers)

[33534] doi:10.1016/j.heliyon.2023.e20173 [paper, repository]

Towards detection of cancer biomarkers in human exhaled air by transfer-learning-powered analysis of odor-evoked calcium activity in rat olfactory bulb.

Journal: Heliyon

Authors' code: drive.google.com/drive/folders (no license)

Status: code verified

[33535] doi:10.1101/2023.09.15.557713 [paper, repository]

Cross-species comparison reveals therapeutic vulnerabilities halting glioblastoma progression

Journal: bioRxiv (preprint)

Authors' code: Zenodo 12910565 (CC-BY-4.0), Zenodo 14968415 (CC-BY-4.0), Zenodo 12910566 (CC-BY-4.0)

Status: code verified, 11 files readable

[33536] doi:10.1111/cns.14469 [paper]

Breakdown of oscillatory effective networks in disorders of consciousness.

Journal: CNS neuroscience & therapeutics

Status: code on request

Saturday, 16 September 2023 (7 papers)

[33537] doi:10.1016/j.isci.2023.107955 [paper]

Drosophila Mpv17 forms an ion channel and regulates energy metabolism.

Journal: iScience

Status: code on request

[33538] doi:10.1016/j.mcpdig.2023.07.007 [paper]

RApid Throughput Screening for Asymptomatic COVID-19 Infection With an Electrocardiogram: A Prospective Observational Study.

Journal: Mayo Clinic proceedings. Digital health

Status: code on request

[33539] doi:10.1038/s41467-023-41502-4 [paper, data]

Loss of microglial MCT4 leads to defective synaptic pruning and anxiety-like behavior in mice.

Journal: Nature communications

Status: data only, 2 datasets cited

[33540] doi:10.1038/s41598-023-42574-4 [paper, data]

Ferroptosis-related factors in the substantia nigra are associated with Parkinson's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[33541] doi:10.1038/s41698-023-00448-y [paper]

First-in-human prospective trial of sonobiopsy in high-grade glioma patients using neuronavigation-guided focused ultrasound.

Journal: NPJ precision oncology

Status: code on request

[33542] doi:10.1038/s42003-023-05337-5 [paper, repository]

Light modulates task-dependent thalamo-cortical connectivity during an auditory attentional task.

Journal: Communications biology

Authors' code: gitlab.uliege.be/cyclotronresearchcentre/public/fasst/dcm_light_pulvinar_ips_oddball (no license)

Status: code verified, 7 files readable

[33543] doi:10.1186/s13293-023-00545-4 [paper, data]

Systematic characterization of a non-transgenic Aβ_1-42 amyloidosis model: synaptic plasticity and memory deficits in female and male mice.

Journal: Biology of sex differences

Status: data only, 2 datasets cited

Friday, 15 September 2023 (27 papers)

[33544] doi:10.1007/s00125-023-06010-6 [paper, repository]

ADGRL1 is a glucose receptor involved in mediating energy and glucose homeostasis.

Journal: Diabetologia

Authors' code: percolator/percolator (Apache-2.0)

Status: code verified, 148 files readable

[33545] doi:10.1007/s00406-023-01692-w [paper, data]

Theta burst stimulation add on to dialectical behavioral therapy in borderline-personality-disorder: methods and design of a randomized, single-blind, placebo-controlled pilot trial.

Journal: European archives of psychiatry and clinical neuroscience

Status: data only, 1 dataset cited

[33546] doi:10.1016/j.apsb.2023.09.005 [paper, data]

ACAT1 deficiency in myeloid cells promotes glioblastoma progression by enhancing the accumulation of myeloid-derived suppressor cells.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 1 dataset cited

[33547] doi:10.1016/j.bbi.2023.09.011 [paper, data]

P2X&lt;sub&gt;7&lt;/sub&gt;R influences tau aggregate burden in human tauopathies and shows distinct signalling in microglia and astrocytes.

Journal: Brain, behavior, and immunity

Status: data only, 1 dataset cited

[33548] doi:10.1016/j.dcn.2023.101301 [paper, repository]

An intracellular isotropic diffusion signal is positively associated with pubertal development in white matter.

Journal: Developmental cognitive neuroscience

Authors' code: 3tissue.github.io/doc (no license), mrtrix.org (no license)

Status: code verified

[33549] doi:10.1016/j.heliyon.2023.e20218 [paper, data]

Pathogenic variants of human GABRA1 gene associated with epilepsy: A computational approach.

Journal: Heliyon

Status: data only, 1 dataset cited

[33550] doi:10.1016/j.isci.2023.107921 [paper]

An early glycolysis burst in microglia regulates mitochondrial dysfunction in oligodendrocytes under neuroinflammation.

Journal: iScience

Status: code on request

[33551] doi:10.1016/j.xgen.2023.100404 [paper, repository]

Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants.

Journal: Cell genomics

Authors' code: rcavalcante/annotatr (no license), Simon-Coetzee/motifBreakR (no license), FunctionLab/sei-framework (BSD-3-Clause), chr1swallace/coloc (no license), kiminsigne-ucla/bc_map (no license), thewonlab/schizophrenia-MPRA (no license)

Status: code verified, 112 files readable, 10 matches

[33552] doi:10.1021/acschemneuro.3c00390 [paper, data]

Photoactivated Protein Degrader for Optical Control of Synaptic Function.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[33553] doi:10.1038/s41380-023-02252-3 [paper]

Shared and distinct structural brain networks related to childhood maltreatment and social support: connectome-based predictive modeling.

Journal: Molecular psychiatry

Status: code on request

[33554] doi:10.1038/s41467-023-40686-z [paper]

A bio-inspired visuotactile neuron for multisensory integration.

Journal: Nature communications

Status: code on request

[33555] doi:10.1038/s41467-023-41033-y [paper, repository]

Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation.

Journal: Nature communications

Authors' code: jvierstra/motif-clustering (no license), hoholee/C9_ALS_FTD_single_nuclei_transcriptome_epigenome (MIT), Zenodo 8188162 (MIT)

Status: code verified, 397 files readable, 40 matches

[33556] doi:10.1038/s41467-023-41343-1 [paper, repository]

Machine learning coarse-grained potentials of protein thermodynamics.

Journal: Nature communications

Authors' code: Zenodo 8155342 (other-open), torchmd (no license), torchmd/torchmd (MIT), torchmd/torchmd-net (MIT), torchmd/torchmd(10.5281 (no license), torchmd/torchmd-net(10.5281 (no license), Zenodo 8155343 (other-open), Zenodo 8155115 (MIT), Zenodo 8155330 (MIT)

Status: code verified, 258 files readable, 9 matches

[33557] doi:10.1038/s41598-023-41636-x [paper, repository]

Sign language experience has little effect on face and biomotion perception in bimodal bilinguals.

Journal: Scientific reports

Authors' code: OSF nkvhy (no license), OSF nm8j5 (no license)

Status: code verified, 14 files readable, 5 matches

[33558] doi:10.1038/s43856-023-00350-5 [paper, repository]

Mediation of the association between disadvantaged neighborhoods and cortical microstructure by body mass index.

Journal: Communications medicine

Authors' code: rotman-baycrest.on.ca/pls (no license)

Status: code verified

[33559] doi:10.1126/sciadv.adi0197 [paper, repository]

DARESOME enables concurrent profiling of multiple DNA modifications with restriction enzymes in single cells and cell-free DNA.

Journal: Science advances

Authors' code: supp:PMC10881072/sciadv.adi0197_code_s1.zip (no license)

Status: empty repository

[33560] doi:10.1371/journal.pcbi.1011460 [paper, repository]

Incorporating physics to overcome data scarcity in predictive modeling of protein function: A case study of BK channels.

Journal: PLoS computational biology

Authors' code: enordquist/bkpred (MIT)

Status: code verified, 5 files readable, 1 match

[33561] doi:10.1523/eneuro.0051-23.2023 [paper, repository]

Saccade-Responsive Visual Cortical Neurons Do Not Exhibit Distinct Visual Response Properties.

Journal: eNeuro

Authors' code: AllenInstitute/visual-coding-saccades (MIT)

Status: code verified, 34 files readable, 9 matches

[33562] doi:10.1523/jneurosci.0090-23.2023 [paper, repository]

Electrophysiological Signatures of Visual Recognition Memory across All Layers of Mouse V1.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: jeffgavornik/VEPStimulusSuite (no license)

Status: code verified, 425 files readable

[33563] doi:10.1523/jneurosci.0579-23.2023 [paper, repository]

Dissociable Effects of Alzheimer's Disease-Related Cognitive Dysfunction and Aging on Functional Brain Network Segregation.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: ziweizhang2405/python_statsmodel_brain_network (no license), wiglab/system-segregation-and-graph-tools (MIT)

Status: code verified, 21 files readable, 8 matches

[33564] doi:10.32604/or.2023.030425 [paper, data]

CHRM3 is a novel prognostic factor of poor prognosis and promotes glioblastoma progression via activation of oncogenic invasive growth factors.

Journal: Oncology research

Status: data only, 1 dataset cited

[33565] doi:10.3389/fgene.2023.1231486 [paper, data]

A new perspective on Alzheimer's disease: microRNAs and circular RNAs.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[33566] doi:10.3389/fnins.2023.1180066 [paper, data]

"What" and "when" predictions modulate auditory processing in a mutually congruent manner.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[33567] doi:10.3390/brainsci13091329 [paper, repository]

Efficient Brain Age Prediction from 3D MRI Volumes Using 2D Projections.

Journal: Brain sciences

Authors' code: emojjon/brain-projection-age (no license)

Status: code verified, 8 files readable, 1 match

[33568] doi:10.3390/healthcare11182551 [paper, data]

Improving Alzheimer's Disease Classification in Brain MRI Images Using a Neural Network Model Enhanced with PCA and SWLDA.

Journal: Healthcare (Basel, Switzerland)

Status: data only, 2 datasets cited

[33569] doi:10.3390/s23187908 [paper, repository]

Enhancing Cross-Subject Motor Imagery Classification in EEG-Based Brain-Computer Interfaces by Using Multi-Branch CNN.

Journal: Sensors (Basel, Switzerland)

Authors' code: radia-rayan-chowdhury/EEGNet-Fusion-V2 (MIT)

Status: code verified, 32 files readable, 8 matches

[33570] doi:10.7554/elife.86340 [paper, repository]

Dynamic organization of cerebellar climbing fiber response and synchrony in multiple functional components reduces dimensions for reinforcement learning.

Journal: eLife

Authors' code: hoang-atr/go_nogo (no license), hoang-atr/HA_time (GPL-3.0)

Status: code verified, 91 files readable, 4 matches

Thursday, 14 September 2023 (29 papers)

[33571] doi:10.1016/j.crmeth.2023.100590 [paper]

Generation of a tyrosine hydroxylase-2A-Cre knockin non-human primate model by homology-directed-repair-biased CRISPR genome editing.

Journal: Cell reports methods

Status: code on request

[33572] doi:10.1016/j.isci.2023.107913 [paper, data]

mNSCs overexpressing <i>Rimkla</i> transplantation facilitates cognitive recovery in a mouse model of traumatic brain injury.

Journal: iScience

Status: code on request, 1 dataset cited

[33573] doi:10.1016/j.isci.2023.107918 [paper, repository]

Feeding neurons integrate metabolic and reproductive states in mice.

Journal: iScience

Authors' code: Leandromvelez/sex-specific-endocrine-signals (no license), jevanveen/ratplots (no license)

Status: code verified, 7 files readable, 2 matches

[33574] doi:10.1016/j.jbc.2023.105252 [paper, data]

Anti-tau antibodies targeting a conformation-dependent epitope selectively bind seeds.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[33575] doi:10.1016/j.xjmad.2023.100025 [paper, repository]

Characterizing positive and negative valence systems function in adolescent depression: An RDoC-informed approach integrating multiple neural measures.

Journal: Journal of mood and anxiety disorders

Authors' code: kodiologist/survivor (gnu), OSF 8m6te (no license)

Status: code verified, 2 files readable

[33576] doi:10.1038/s41398-023-02563-7 [paper, repository]

Bidirectional genetic overlap between autism spectrum disorder and cognitive traits.

Journal: Translational psychiatry

Authors' code: precimed (no license), bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

[33577] doi:10.1038/s41467-023-41380-w [paper, data]

Neurofunctional underpinnings of individual differences in visual episodic memory performance.

Journal: Nature communications

Status: data only, 3 datasets cited

[33578] doi:10.1038/s41559-023-02170-1 [paper, repository]

A lamprey neural cell type atlas illuminates the origins of the vertebrate brain.

Journal: Nature ecology & evolution

Authors' code: Zenodo 5903844 (CC-BY-4.0), Zenodo 8113793 (other-open), f-lamanna/lampreybrainatlas (MIT)

Status: code verified, 64 files readable

[33579] doi:10.1038/s41597-023-02533-0 [paper, repository]

A scATAC-seq atlas of chromatin accessibility in axolotl brain regions.

Journal: Scientific data

Authors' code: shiquan/PISA (MIT), figshare 22548400 (CC-BY-4.0)

Status: code verified, 250 files readable, 16 matches

[33580] doi:10.1038/s41598-023-41221-2 [paper, data]

A principled representation of elongated structures using heatmaps.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[33581] doi:10.1038/s41598-023-42194-y [paper, repository]

On fast simulation of dynamical system with neural vector enhanced numerical solver.

Journal: Scientific reports

Authors' code: dedekinds/NeurVec (MIT)

Status: code verified, 26 files readable

[33582] doi:10.1038/s41598-023-42506-2 [paper, repository]

Genetic atlas of hygro-and thermosensory cells in the vinegar fly Drosophila melanogaster.

Journal: Scientific reports

Authors' code: hygrosensation/D.melanogaster (no license)

Status: code verified, 3 files readable

[33583] doi:10.1038/s42003-023-05323-x [paper, repository]

Neural and behavioral signatures of the multidimensionality of manipulable object processing.

Journal: Communications biology

Authors' code: OSF jzuf3 (no license)

Status: empty repository

[33584] doi:10.1083/jcb.202303138 [paper, repository]

δ-Catenin controls astrocyte morphogenesis via layer-specific astrocyte-neuron cadherin interactions.

Journal: The Journal of cell biology

Authors' code: Eroglu-Lab/Sholl_Macro (MIT), Eroglu-Lab/In-vivo-Sholl-Analysis (MIT), eroglu-lab/syn_bot (MIT), Eroglu-Lab/RNA-FISH-analysis-pipeline (no license)

Status: code verified, 26 files readable, 3 matches

[33585] doi:10.1093/braincomms/fcad245 [paper]

Aging and Alzheimer's disease have dissociable effects on local and regional medial temporal lobe connectivity.

Journal: Brain communications

Status: code on request

[33586] doi:10.1111/tops.12688 [paper, repository]

A Multivariate Method for Dynamic System Analysis: Multivariate Detrended Fluctuation Analysis Using Generalized Variance.

Journal: Topics in cognitive science

Authors' code: cran.r-project.org/package=mvdfa (no license)

Status: code verified

[33587] doi:10.1126/science.abp9556 [paper, data]

MEG3 activates necroptosis in human neuron xenografts modeling Alzheimer's disease.

Journal: Science (New York, N.Y.)

Status: data only, 1 dataset cited

[33588] doi:10.1186/s13041-023-01055-5 [paper, data]

Changes in oligodendroglial subpopulations in Parkinson's disease.

Journal: Molecular brain

Status: data only, 12 datasets cited

[33589] doi:10.1371/journal.pone.0291558 [paper, data]

Contribution and functional connectivity between cerebrum and cerebellum on sub-lexical and lexical-semantic processing of verbs.

Journal: PloS one

Status: data only, 1 dataset cited

[33590] doi:10.3389/fnhum.2023.1235192 [paper, repository]

An F-ratio-based method for estimating the number of active sources in MEG.

Journal: Frontiers in human neuroscience

Authors' code: Amita-Giri/FRatio-based-Method-for-Source-Enumeration (no license)

Status: code verified, 30 files readable, 1 match

[33591] doi:10.3389/fninf.2023.1250260 [paper, repository]

PyDapsys: an open-source library for accessing electrophysiology data recorded with DAPSYS.

Journal: Frontiers in neuroinformatics

Authors' code: WerWolv/ImHex (GPL-2.0), Zenodo 7970520 (BSD-3-Clause), digital-c-fiber/pydapsys (BSD-3-Clause)

Status: code verified, 421 files readable, 1 match

[33592] doi:10.3389/fnins.2023.1260655 [paper]

Mastication stimuli regulate the heartbeat rate through rhythmic regulation by the hypothalamic-autonomic system; molecular and telemetric studies in weaning-stage rats.

Journal: Frontiers in neuroscience

Status: data only

[33593] doi:10.3390/brainsci13091320 [paper, data]

Brain Tumor Classification from MRI Using Image Enhancement and Convolutional Neural Network Techniques.

Journal: Brain sciences

Status: data only, 4 datasets cited

[33594] doi:10.3390/cells12182277 [paper, data]

Free Bilirubin Induces Neuro-Inflammation in an Induced Pluripotent Stem Cell-Derived Cortical Organoid Model of Crigler-Najjar Syndrome.

Journal: Cells

Status: data only, 1 dataset cited

[33595] doi:10.3390/diagnostics13182947 [paper, repository]

DSMRI: Domain Shift Analyzer for Multi-Center MRI Datasets.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: rkushol/DSMRI (MIT)

Status: code verified, 9 files readable, 8 matches

[33596] doi:10.3390/diagnostics13182948 [paper, data]

Hybrid Techniques of Facial Feature Image Analysis for Early Detection of Autism Spectrum Disorder Based on Combined CNN Features.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[33597] doi:10.3390/e25091333 [paper, repository]

A Novel Strategy for Extracting Richer Semantic Information Based on Fault Detection in Power Transmission Lines.

Journal: Entropy (Basel, Switzerland)

Authors' code: zhangzhengde0225/FINet (no license)

Status: code verified, 28 files readable, 2 matches

[33598] doi:10.3390/ijms241814107 [paper, data]

miR-29a Is Downregulated in Progenies Derived from Chronically Stressed Males.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[33599] doi:10.9758/cpn.23.1079 [paper, data]

The Association between Default-mode Network Functional Connectivity and Childhood Trauma on the Symptom Load in Male Adults with Methamphetamine Use Disorder.

Journal: Clinical psychopharmacology and neuroscience : the official scientific journal of the Korean College of Neuropsychopharmacology

Status: data only, 1 dataset cited

Wednesday, 13 September 2023 (26 papers, 1 on this page)

[33600] doi:10.1016/j.ebiom.2023.104784 [paper, repository]

Long-COVID cognitive impairments and reproductive hormone deficits in men may stem from GnRH neuronal death.

Journal: EBioMedicine

Authors' code: sreekala03/Gonado_Covid (no license)

Status: code verified, 2 files readable, 2 matches

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