Every paper, by date: page 151

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 151 of 200: 13 September 2023 to 2 September 2023.

Wednesday, 13 September 2023 (26 papers, 25 on this page)

[33601] doi:10.1016/j.isci.2023.107897 [paper]

CircSOBP suppresses the progression of glioma by disrupting glycolysis and promoting the MDA5-mediated immune response.

Journal: iScience

Status: code on request

[33602] doi:10.1016/j.isci.2023.107920 [paper, data]

Prenatal alcohol alters inflammatory signatures in enteric portal tissues following adult-onset cerebrovascular ischemic stroke.

Journal: iScience

Status: code on request, 1 dataset cited

[33603] doi:10.1016/j.omtm.2023.09.003 [paper, repository]

Optogenetic targeting of AII amacrine cells restores retinal computations performed by the inner retina.

Journal: Molecular therapy. Methods & clinical development

Authors' code: jagorn/MEA-Analysis (no license)

Status: code verified, 204 files readable, 1 match

[33604] doi:10.1038/s41377-023-01248-6 [paper, repository]

DEEP-squared: deep learning powered De-scattering with Excitation Patterning.

Journal: Light, science & applications

Authors' code: wadduwagelab/DEEP-squared (no license)

Status: code verified, 21 files readable, 8 matches

[33605] doi:10.1038/s41467-023-41323-5 [paper, repository]

Single neuron responses underlying face recognition in the human midfusiform face-selective cortex.

Journal: Nature communications

Authors' code: csn-le/wave_clus (no license)

Status: code verified, 59 files readable, 1 match

[33606] doi:10.1038/s41467-023-41334-2 [paper, repository]

Variation in spatial dependencies across the cortical mantle discriminates the functional behaviour of primary and association cortex.

Journal: Nature communications

Authors' code: ActiveNeuroImaging/BrainVariograms (MIT)

Status: code verified, 7 files readable, 3 matches

[33607] doi:10.1038/s41467-023-41407-2 [paper, data]

Human OPRM1 and murine Oprm1 promoter driven viral constructs for genetic access to μ-opioidergic cell types.

Journal: Nature communications

Status: data only, 2 datasets cited

[33608] doi:10.1038/s41586-023-06473-y [paper, repository]

Single-cell brain organoid screening identifies developmental defects in autism.

Journal: Nature

Authors' code: quadbiolab/Pando (MIT), quadbiolab/ASD_CHOOSE (no license)

Status: code verified, 35 files readable, 9 matches

[33609] doi:10.1038/s41586-023-06528-0 [paper, repository]

Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor.

Journal: Nature

Authors' code: prody/ProDy (MIT)

Status: code verified, 325 files readable, 1 match

[33610] doi:10.1038/s42003-023-05291-2 [paper, data]

Integration of landmark and saccade target signals in macaque frontal cortex visual responses.

Journal: Communications biology

Status: code on request, 1 dataset cited

[33611] doi:10.1098/rsif.2023.0279 [paper, repository]

Thermotaxis in an apolar, non-neuronal animal.

Journal: Journal of the Royal Society, Interface

Authors' code: prakashlab/Trichoplax_Thermotaxis (no license), doi:10.6084/m9.figshare.c.6806590 (no license)

Status: code verified, 2 files readable, 3 matches

[33612] doi:10.1111/gbb.12865 [paper, data]

A mild impairment in reversal learning in a bowl-digging substrate deterministic task but not other cognitive tests in the Dlg2+/- rat model of genetic risk for psychiatric disorder.

Journal: Genes, brain, and behavior

Status: data only, 1 dataset cited

[33613] doi:10.1126/sciadv.adi4147 [paper, data]

3D architecture and a bicellular mechanism of touch detection in mechanosensory corpuscle.

Journal: Science advances

Status: data only, 1 dataset cited

[33614] doi:10.1186/s13062-023-00413-6 [paper, data]

Preliminary insights into RNA in CSF of pediatric SMA patients after 6 months of nusinersen.

Journal: Biology direct

Status: data only, 1 dataset cited

[33615] doi:10.1186/s13287-023-03482-6 [paper, data]

Loss of Dip2b leads to abnormal neural differentiation from mESCs.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[33616] doi:10.1186/s13578-023-01116-1 [paper, data]

A distinct circular DNA profile intersects with proteome changes in the genotoxic stress-related hSOD1^G93A model of ALS.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

[33617] doi:10.1523/eneuro.0064-23.2023 [paper, repository]

Larger and Denser: An Optimal Design for Surface Grids of EMG Electrodes to Identify Greater and More Representative Samples of Motor Units.

Journal: eNeuro

Authors' code: figshare 22149287 (CC-BY-4.0)

Status: code verified

[33618] doi:10.1523/jneurosci.0816-23.2023 [paper, data]

Spontaneous α Brain Dynamics Track the Episodic "When".

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 2 datasets cited

[33619] doi:10.2147/jir.s422189 [paper]

Integrated Analysis of Immune Infiltration and Hub Pyroptosis-Related Genes for Multiple Sclerosis.

Journal: Journal of inflammation research

Status: data only

[33620] doi:10.3389/fnins.2023.1263693 [paper, repository]

Imaging and clinical predictors of acute constipation in patients with acute ischemic stroke.

Journal: Frontiers in neuroscience

Authors' code: atdemarco/svrlsmgui (GPL-3.0)

Status: code verified, 142 files readable, 4 matches

[33621] doi:10.3390/bioengineering10091080 [paper, repository]

A Rapid-Patterning 3D Vessel-on-Chip for Imaging and Quantitatively Analyzing Cell-Cell Junction Phenotypes.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: StrokaLab/JAnaP (no license)

Status: code verified, 58 files readable

[33622] doi:10.3390/biomedicines11092528 [paper, repository]

Volumetric Differences in Cerebellum and Brainstem in Patients with Migraine: A UK Biobank Study.

Journal: Biomedicines

Authors' code: OresteAffatato/Cerebellum_Brainstem_Migraine_Project (no license)

Status: code verified, 2 files readable, 4 matches

[33623] doi:10.3390/ijms241814024 [paper, data]

Adipocyte-Derived Small Extracellular Vesicles from Patients with Alzheimer Disease Carry miRNAs Predicted to Target the CREB Signaling Pathway in Neurons.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[33624] doi:10.3390/s23187860 [paper, data]

Ensemble Wavelet Decomposition-Based Detection of Mental States Using Electroencephalography Signals.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[33625] doi:10.7554/elife.85275 [paper, repository]

A hierarchical model for external electrical control of an insect, accounting for inter-individual variation of muscle force properties.

Journal: eLife

Authors' code: doi:10.5061/dryad.wpzgmsbsw (no license)

Status: code verified

Tuesday, 12 September 2023 (24 papers)

[33626] doi:10.1016/j.bpsgos.2023.08.018 [paper, repository]

Age-Related Alterations in Gray Matter Microstructure in Older People With Remitted Major Depression at Risk for Dementia.

Journal: Biological psychiatry global open science

Authors' code: arash-n/GBSS (CC-BY-NC-4.0)

Status: code verified, 11 files readable, 1 match

[33627] doi:10.1016/j.celrep.2023.113027 [paper, repository]

Endocannabinoid release at ventral hippocampal-amygdala synapses regulates stress-induced behavioral adaptation.

Journal: Cell reports

Authors' code: tjd2002/tjd-shared-code (no license)

Status: code verified, 118 files readable

[33628] doi:10.1016/j.isci.2023.107878 [paper]

The PrL^Glu→avBNST^GABA circuit rapidly modulates depression-like behaviors in male mice.

Journal: iScience

Status: code on request

[33629] doi:10.1016/j.nicl.2023.103509 [paper, data]

Quantitative T1 mapping detects blood-brain barrier breakdown in apparently non-enhancing multiple sclerosis lesions.

Journal: NeuroImage. Clinical

Status: data only, 2 datasets cited

[33630] doi:10.1038/s41467-023-40999-z [paper, repository]

Non-invasive assessment of normal and impaired iron homeostasis in the brain.

Journal: Nature communications

Authors' code: Zenodo 8186069 (other-open), shirfilo/r1_r2s_rel_toolbox (MIT)

Status: code verified, 20 files readable

[33631] doi:10.1038/s41467-023-41412-5 [paper, repository]

Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies.

Journal: Nature communications

Authors' code: francicco/-ComparativeGenomicsOfHeliconiini (no license), Zenodo 8220878 (other-open)

Status: code verified, 9 files readable, 2 matches

[33632] doi:10.1038/s41467-023-41455-8 [paper, repository]

Single nucleus transcriptomics of ventral midbrain identifies glial activation associated with chronic opioid use disorder.

Journal: Nature communications

Authors' code: piquelab/sc_brains (no license)

Status: code verified, 18 files readable, 12 matches

[33633] doi:10.1038/s41597-023-02524-1 [paper, repository]

Open access dataset integrating EEG and fNIRS during Stroop tasks.

Journal: Scientific data

Authors' code: Yaaaaaaaaabby/fNIRS-data-pre-processing-from-Zemeng-Chen (no license), gitee.com/chen-zemeng/f-nirs-data-pre-processing-from-zemeng-chen (no license)

Status: code verified, 1 file readable

[33634] doi:10.1111/cns.14431 [paper, data]

CD8⁺ T cell infiltration and proliferation in the brainstem during experimental cerebral malaria.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[33635] doi:10.1111/obr.13620 [paper, data]

Effects of bariatric surgery and dietary interventions for obesity on brain neurotransmitter systems and metabolism: A systematic review of positron emission tomography (PET) and single-photon emission computed tomography (SPECT) studies.

Journal: Obesity reviews : an official journal of the International Association for the Study of Obesity

Status: data only, 2 datasets cited

[33636] doi:10.1162/imag_a_00016 [paper, repository]

Cortical changes during the learning of sequences of simultaneous finger presses.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: benjamingarzon/SeqLearn (no license), benjamingarzon/LH-RSA (no license)

Status: code verified, 70 files readable, 14 matches

[33637] doi:10.1162/imag_a_00017 [paper, repository]

Characterisation of the neonatal brain using myelin-sensitive magnetisation transfer imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: git.ecdf.ed.ac.uk/jbrl/neonatal-mtsat (no license)

Status: code verified

[33638] doi:10.1186/s12880-023-01097-0 [paper, data]

A fast and accurate brain extraction method for CT head images.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[33639] doi:10.1186/s12967-023-04388-w [paper, data]

Exploration of the radiosensitivity-related prognostic risk signature in patients with glioma: evidence from microarray data.

Journal: Journal of translational medicine

Status: code on request, 3 datasets cited

[33640] doi:10.1186/s40168-023-01648-1 [paper]

Gut microbiota of old mice worsens neurological outcome after brain ischemia via increased valeric acid and IL-17 in the blood.

Journal: Microbiome

Status: data only

[33641] doi:10.1371/journal.pcbi.1011459 [paper, repository]

Beyond ℓ1 sparse coding in V1.

Journal: PLoS computational biology

Authors' code: rentzi/sparseRegularizers (MIT)

Status: code verified, 6 files readable, 1 match

[33642] doi:10.3389/fcell.2023.1271178 [paper, data]

ADAM11 a novel regulator of Wnt and BMP4 signaling in neural crest and cancer.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[33643] doi:10.3389/fncel.2023.1233730 [paper, data]

Synaptic input and temperature influence sensory coding in a mechanoreceptor.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[33644] doi:10.3389/fnins.2023.1231584 [paper]

Pharmacological rescue of mitochondrial and neuronal defects in <i>SPG7</i> hereditary spastic paraplegia patient neurons using high throughput assays.

Journal: Frontiers in neuroscience

Status: data only

[33645] doi:10.3390/cancers15184526 [paper, data]

Identifying New Contributors to Brain Metastasis in Lung Adenocarcinoma: A Transcriptomic Meta-Analysis.

Journal: Cancers

Status: data only, 1 dataset cited

[33646] doi:10.3390/cells12182254 [paper, data]

Transcriptomic Analysis in the Hippocampus and Retina of Tg2576 AD Mice Reveals Defective Mitochondrial Oxidative Phosphorylation and Recovery by Tau 12A12mAb Treatment.

Journal: Cells

Status: data only, 1 dataset cited

[33647] doi:10.3390/s23187816 [paper, data]

An Efficient Brain Tumor Segmentation Method Based on Adaptive Moving Self-Organizing Map and Fuzzy K-Mean Clustering.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[33648] doi:10.3390/s23187834 [paper, repository]

A Deep Learning-Based Automated Framework for Subpeak Designation on Intracranial Pressure Signals.

Journal: Sensors (Basel, Switzerland)

Authors' code: donatien-lege/P1_P2_detection_ratio (Apache-2.0)

Status: code verified, 22 files readable

[33649] doi:10.7554/elife.84602 [paper, repository]

Bayesian analysis of phase data in EEG and MEG.

Journal: eLife

Authors' code: conorhoughton/NeuralProcessingOfPhrases (no license)

Status: code verified, 125 files readable

Monday, 11 September 2023 (26 papers)

[33650] doi:10.1002/brb3.3250 [paper]

The involvement of language-associated networks, tracts, and cortical regions in frontotemporal dementia and amyotrophic lateral sclerosis: Structural and functional alterations.

Journal: Brain and behavior

Status: code on request

[33651] doi:10.1007/s00429-023-02702-2 [paper, repository]

Comprehensive voxel-wise, tract-based, and network lesion mapping reveals unique architectures of right and left visuospatial neglect.

Journal: Brain structure & function

Authors' code: OSF qwd8k (no license)

Status: code verified, 12 files readable

[33652] doi:10.1007/s10548-023-01003-5 [paper, data]

MICROSTATELAB: The EEGLAB Toolbox for Resting-State Microstate Analysis.

Journal: Brain topography

Status: data only, 1 dataset cited

[33653] doi:10.1007/s11571-023-10004-w [paper, repository]

EEG-based emotion recognition using a temporal-difference minimizing neural network.

Journal: Cognitive neurodynamics

Authors' code: jxygithub123/TDMNN (no license)

Status: code verified, 4 files readable

[33654] doi:10.1007/s12028-023-01816-z [paper, repository]

Multimodal Prediction of 3- and 12-Month Outcomes in ICU Patients with Acute Disorders of Consciousness.

Journal: Neurocritical care

Authors' code: fraimondo/connectme-followup (no license)

Status: code verified, 28 files readable, 4 matches

[33655] doi:10.1007/s12035-023-03636-w [paper, repository]

TGN-020 Alleviate Inflammation and Apoptosis After Cerebral Ischemia-Reperfusion Injury in Mice Through Glymphatic and ERK1/2 Signaling Pathway.

Journal: Molecular neurobiology

Authors' code: deweylab/RSEM (GPL-3.0)

Status: code verified, 387 files readable

[33656] doi:10.1016/j.brs.2023.09.009 [paper, data]

TMS over the pre-SMA enhances semantic cognition via remote network effects on task-based activity and connectivity.

Journal: Brain stimulation

Status: data only, 2 datasets cited

[33657] doi:10.1038/s41467-023-41261-2 [paper, repository]

The spatial and temporal structure of neural activity across the fly brain.

Journal: Nature communications

Authors' code: schafferEvan/VIP (no license), themattinthehatt/daart (GPL-3.0), schafferEvan/flygenvectors (no license), Zenodo 8277452 (other-open), Zenodo 8263548 (other-open), Zenodo 8263524 (other-open)

Status: code verified, 572 files readable, 8 matches

[33658] doi:10.1038/s41467-023-41406-3 [paper, repository]

Endogenous fluctuations in cortical state selectively enhance different modes of sensory processing in human temporal lobe.

Journal: Nature communications

Authors' code: Zenodo 8190383 (CC-BY-4.0)

Status: code verified, 4 files readable, 2 matches

[33659] doi:10.1038/s41597-023-02525-0 [paper, repository]

DISCOVER-EEG: an open, fully automated EEG pipeline for biomarker discovery in clinical neuroscience.

Journal: Scientific data

Authors' code: Zenodo 8207523 (CC-BY-4.0), Zenodo 17977342 (CC-BY-4.0), Zenodo 17977343 (CC-BY-4.0), crisglav/discover-eeg (CC-BY-4.0)

Status: code verified, 118 files readable, 31 matches

[33660] doi:10.1038/s41598-023-41153-x [paper, repository]

Sex and menstrual cycle influence human spatial navigation strategies and performance.

Journal: Scientific reports

Authors' code: OSF nakd5 (no license)

Status: empty repository

[33661] doi:10.1038/s41598-023-42354-0 [paper, repository]

Diagnostic accuracy of brain age prediction in a memory clinic population and comparison with clinically available volumetric measures.

Journal: Scientific reports

Authors' code: estenhl/pyment-public (CC-BY-NC-4.0)

Status: code verified, 68 files readable

[33662] doi:10.1038/s43587-023-00479-x [paper, data]

Transcriptional and epigenetic decoding of the microglial aging process.

Journal: Nature aging

Status: data only, 1 dataset cited

[33663] doi:10.1073/pnas.2305759120 [paper, data]

Sensory tuning in neuronal movement commands.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[33664] doi:10.1162/imag_a_00018 [paper, repository]

Overcoming harmonic hurdles: Genuine beta-band rhythms vs. contributions of alpha-band waveform shape.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nschawor/eeg-beta-harmonic (no license)

Status: code verified, 14 files readable, 2 matches

[33665] doi:10.1186/s12885-023-10896-1 [paper, data]

Integrated profiling identifies CACNG3 as a prognostic biomarker for patients with glioma.

Journal: BMC cancer

Status: data only, 1 dataset cited

[33666] doi:10.1186/s12974-023-02888-6 [paper, data]

Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[33667] doi:10.1186/s40478-023-01651-5 [paper, data]

Translocator protein (18kDA) (TSPO) marks mesenchymal glioblastoma cell populations characterized by elevated numbers of tumor-associated macrophages.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[33668] doi:10.1371/journal.pcbi.1011444 [paper, repository]

iHerd: an integrative hierarchical graph representation learning framework to quantify network changes and prioritize risk genes in disease.

Journal: PLoS computational biology

Authors' code: aicb-ZhangLabs/iHerd (GPL-3.0)

Status: code verified, 18 files readable, 3 matches

[33669] doi:10.1371/journal.pcbi.1011449 [paper, repository]

Classification of T lymphocyte motility behaviors using a machine learning approach.

Journal: PLoS computational biology

Authors' code: eliebouassi/classification-lymphocyte-behavior (no license)

Status: code verified, 3 files readable, 2 matches

[33670] doi:10.1371/journal.pcbi.1011473 [paper, repository]

Testing predictive coding theories of autism spectrum disorder using models of active inference.

Journal: PLoS computational biology

Authors' code: OSF 5k48n (no license)

Status: code verified, 6 files readable, 6 matches

[33671] doi:10.1523/eneuro.0514-22.2023 [paper, repository]

Automated Segmentation of the Mouse Body Language to Study Stimulus-Evoked Emotional Behaviors.

Journal: eNeuro

Authors' code: gchelini87/SEB3R (no license), gin.g-node.org/gchelini/seb3r_validation_data (CC0-1.0)

Status: code verified, 16 files readable, 3 matches

[33672] doi:10.26508/lsa.202302021 [paper, repository]

Nanoscaled RIM clustering at presynaptic active zones revealed by endogenous tagging.

Journal: Life science alliance

Authors' code: scikit-learn-contrib/hdbscan (BSD-3-Clause)

Status: code verified, 33 files readable, 1 match

[33673] doi:10.3390/bioengineering10091074 [paper, data]

REM Sleep Stage Identification with Raw Single-Channel EEG.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[33674] doi:10.3390/life13091893 [paper, data]

Improving Structural MRI Preprocessing with Hybrid Transformer GANs.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[33675] doi:10.7554/elife.85561 [paper, repository]

Tomosyn affects dense core vesicle composition but not exocytosis in mammalian neurons.

Journal: eLife

Authors' code: ftwkoopmans/msdap (GPL-3.0)

Status: code verified, 78 files readable, 4 matches

Sunday, 10 September 2023 (4 papers)

[33676] doi:10.1007/s00018-023-04945-y [paper, data]

Upregulation of HDAC9 in hippocampal neurons mediates depression-like behaviours by inhibiting ANXA2 degradation.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 6 datasets cited

[33677] doi:10.1111/ejn.16140 [paper, repository]

Neural dynamics underlying successful auditory short-term memory performance.

Journal: The European journal of neuroscience

Authors' code: OSF wafby (no license)

Status: code verified

[33678] doi:10.1111/psyp.14435 [paper]

Individual prediction tendencies do not generalize across modalities.

Journal: Psychophysiology

Status: code on request

[33679] doi:10.3390/ijms241813924 [paper, data]

In Silico Analysis Reveals the Modulation of Ion Transmembrane Transporters in the Cerebellum of Alzheimer's Disease Patients.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 9 September 2023 (21 papers)

[33680] doi:10.1002/hbm.26478 [paper, repository]

Both stronger and weaker cerebro-cerebellar functional connectivity patterns during processing of spoken sentences in autism spectrum disorder.

Journal: Human brain mapping

Authors' code: Kenet-lab (no license)

Status: code verified

[33681] doi:10.1002/hbm.26480 [paper, data]

Microstates of the cortical brain-heart axis.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[33682] doi:10.1002/hbm.26485 [paper, repository]

Compressed primary-to-transmodal gradient is accompanied with subcortical alterations and linked to neurotransmitters and cellular signatures in major depressive disorder.

Journal: Human brain mapping

Authors' code: chrisfilo/alleninf (BSD-3-Clause)

Status: code verified, 10 files readable

[33683] doi:10.1007/s11357-023-00916-0 [paper, data]

FABP7 drives an inflammatory response in human astrocytes and is upregulated in Alzheimer's disease.

Journal: GeroScience

Status: data only, 1 dataset cited

[33684] doi:10.1016/j.celrep.2023.113119 [paper, repository]

Neural decoding reveals specialized kinematic tuning after an abrupt cortical transition.

Journal: Cell reports

Authors' code: rglanz/Glanz_et_al_2023 (GPL-3.0), Zenodo 8238644 (other-open), KordingLab/Neural_Decoding (BSD-3-Clause), nmtimme/Neuroscience-Information-Theory-Toolbox (no license)

Status: code verified, 77 files readable, 1 match

[33685] doi:10.1016/j.isci.2023.107831 [paper, repository]

KMT2D suppresses Sonic hedgehog-driven medulloblastoma progression and metastasis.

Journal: iScience

Authors' code: macs3-project/MACS (BSD-3-Clause)

Status: code verified, 214 files readable, 1 match

[33686] doi:10.1016/j.isci.2023.107840 [paper, repository]

Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture.

Journal: iScience

Authors' code: jeffalstott/powerlaw (MIT), silvia1970/criticality (no license)

Status: code verified, 27 files readable, 2 matches

[33687] doi:10.1016/j.isci.2023.107857 [paper]

Single cell <i>in vivo</i> optogenetic stimulation by two-photon excitation fluorescence transfer.

Journal: iScience

Status: code on request

[33688] doi:10.1016/j.isci.2023.107858 [paper]

Tuberculostearic acid incorporated predictive model contributes to the clinical diagnosis of tuberculous meningitis.

Journal: iScience

Status: code on request

[33689] doi:10.1016/j.isci.2023.107865 [paper]

Immediate responses to ambient light <i>in vivo</i> reveal distinct subpopulations of suprachiasmatic VIP neurons.

Journal: iScience

Status: code on request

[33690] doi:10.1016/j.isci.2023.107887 [paper, repository]

Acquisition of neural fate by combination of BMP blockade and chromatin modification.

Journal: iScience

Authors' code: ddbj.nig.ac.jp/index-e.html (no license)

Status: code verified

[33691] doi:10.1016/j.molmet.2023.101803 [paper, repository]

Acute inhibition of hunger-sensing AgRP neurons promotes context-specific learning in mice.

Journal: Molecular metabolism

Authors' code: Andrews-Lab/Fiber_photometry_analysis (GPL-3.0)

Status: code verified, 21 files readable

[33692] doi:10.1016/j.neuroimage.2023.120373 [paper, repository]

Adaptive short-term plasticity in the typical reading network.

Journal: NeuroImage

Authors' code: OSF fpgcy (no license)

Status: code verified, 6 files readable, 4 matches

[33693] doi:10.1016/j.nicl.2023.103507 [paper]

Effects of de-facing software mri_reface on utility of imaging biomarkers used in Alzheimer's disease research.

Journal: NeuroImage. Clinical

Status: code on request

[33694] doi:10.1016/j.omtm.2023.09.002 [paper]

Oxidative stress induced by sustained supraphysiological intrastriatal GDNF delivery is prevented by dose regulation.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[33695] doi:10.1016/j.zemedi.2023.08.007 [paper, repository]

Assessment of resolution and noise in magnetic resonance images reconstructed by data driven approaches.

Journal: Zeitschrift fur medizinische Physik

Authors' code: expRad (no license)

Status: code verified

[33696] doi:10.1038/s42003-023-05305-z [paper]

Neural encoding of instantaneous kinematics of eye-head gaze shifts in monkey superior Colliculus.

Journal: Communications biology

Status: code on request

[33697] doi:10.1038/s42003-023-05309-9 [paper]

Cerebellar climbing fibers multiplex movement and reward signals during a voluntary movement task in mice.

Journal: Communications biology

Status: code on request

[33698] doi:10.1186/s40708-023-00204-9 [paper, data]

Common spatial pattern for classification of loving kindness meditation EEG for single and multiple sessions.

Journal: Brain informatics

Status: data only, 2 datasets cited

[33699] doi:10.18632/aging.205011 [paper, data]

Herpesvirus latent infection promotes stroke via activating the OTUD1/NF-κB signaling pathway.

Journal: Aging

Status: data only, 1 dataset cited

[33700] doi:10.3390/ijms241813893 [paper]

An Animal Model for Chronic Meningeal Inflammation and Inflammatory Demyelination of the Cerebral Cortex.

Journal: International journal of molecular sciences

Status: data only

Friday, 8 September 2023 (19 papers)

[33701] doi:10.1002/adma.202300305 [paper, data]

Microfibrous Scaffolds Guide Stem Cell Lumenogenesis and Brain Organoid Engineering.

Journal: Advanced materials (Deerfield Beach, Fla.)

Status: data only, 1 dataset cited

[33702] doi:10.1007/s10142-023-01228-4 [paper, repository]

From genetic correlations of Alzheimer's disease to classification with artificial neural network models.

Journal: Functional & integrative genomics

Authors' code: Nealelab/UK_Biobank_GWAS (no license)

Status: code verified, 52 files readable

[33703] doi:10.1016/j.celrep.2023.113088 [paper]

VIP interneurons regulate cortical size tuning and visual perception.

Journal: Cell reports

Status: code on request

[33704] doi:10.1016/j.cub.2023.08.037 [paper, repository]

Dimensionality reduction reveals separate translation and rotation populations in the zebrafish hindbrain.

Journal: Current biology : CB

Authors' code: doi:10.17632/c4wm27z8f6.1 (no license), jcbmarques/clusterdv (no license), jefferislab/MakeAverageBrain (no license)

Status: code verified, 141 files readable, 2 matches

[33705] doi:10.1038/s41392-023-01552-y [paper, data]

A metabolome atlas of mouse brain on the global metabolic signature dynamics following short-term fasting.

Journal: Signal transduction and targeted therapy

Status: data only, 2 datasets cited

[33706] doi:10.1038/s41467-023-41078-z [paper, repository]

Training-induced circuit-specific excitatory synaptogenesis in mice is required for effort control.

Journal: Nature communications

Authors' code: ErogluLab/CellCounts (no license), UlloaSeverinoLab (no license)

Status: code verified, 4 files readable

[33707] doi:10.1038/s41597-023-02507-2 [paper, repository]

Multi-omic atlas of the parahippocampal gyrus in Alzheimer's disease.

Journal: Scientific data

Authors' code: Zenodo 7818443 (other-open), clairecoleman1/phg_code_examples (no license)

Status: code verified, 2 files readable, 3 matches

[33708] doi:10.1038/s41598-023-42046-9 [paper]

Analysis of cnidarian Gcm suggests a neuronal origin of glial EAAT1 function.

Journal: Scientific reports

Status: code on request

[33709] doi:10.1093/braincomms/fcad242 [paper, repository]

Fast ripples reflect increased excitability that primes epileptiform spikes.

Journal: Brain communications

Authors' code: Zenodo 8125756 (CC-BY-4.0), shenweiss/FRexcitabilityprespike (no license)

Status: code verified, 9 files readable

[33710] doi:10.1186/s13075-023-03146-z [paper, data]

Novel CSF biomarkers for diagnosis and integrated analysis of neuropsychiatric systemic lupus erythematosus: based on antibody profiling.

Journal: Arthritis research & therapy

Status: data only, 1 dataset cited

[33711] doi:10.1186/s40708-023-00202-x [paper, repository]

Automatic identification of scientific publications describing digital reconstructions of neural morphology.

Journal: Brain informatics

Authors' code: Joindbre/TextRelevancy (AGPL-3.0)

Status: code verified, 15 files readable, 4 matches

[33712] doi:10.1371/journal.pcbi.1011427 [paper, repository]

A whole-task brain model of associative recognition that accounts for human behavior and neuroimaging data.

Journal: PLoS computational biology

Authors' code: Zenodo 7988965 (other-open), jelmerborst/ar_brainmodel (GPL-3.0)

Status: code verified, 48 files readable, 2 matches

[33713] doi:10.1371/journal.pcbi.1011452 [paper, data]

Computational modeling of multiscale collateral blood supply in a whole-brain-scale arterial network.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[33714] doi:10.1371/journal.pone.0276133 [paper, repository]

A novel framework for classification of two-class motor imagery EEG signals using logistic regression classification algorithm.

Journal: PloS one

Authors' code: supp:PMC10490872/pone.0276133.s001.rar (no license)

Status: code verified

[33715] doi:10.1371/journal.pone.0291068 [paper, data]

Clinical protocol: Feasibility of evaluating abemaciclib neuropharmacokinetics of diffuse midline glioma using intratumoral microdialysis.

Journal: PloS one

Status: data only, 1 dataset cited

[33716] doi:10.3389/fnins.2023.1249973 [paper, data]

Expression of the schizophrenia associated gene <i>FEZ1</i> in the early developing fetal human forebrain.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[33717] doi:10.3390/brainsci13091297 [paper, repository]

Unique Brain Network Identification Number for Parkinson's and Healthy Individuals Using Structural MRI.

Journal: Brain sciences

Authors' code: NeuralLabIITGuwahati/UBNIN (GPL-3.0)

Status: code verified, 2 files readable

[33718] doi:10.3390/ijms241813867 [paper, data]

Investigation into Molecular Brain Aging in Senescence-Accelerated Mouse (SAM) Model Employing Whole Transcriptomic Analysis in Search of Potential Molecular Targets for Therapeutic Interventions.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[33719] doi:10.7554/elife.88289 [paper, repository]

Retinal input integration in excitatory and inhibitory neurons in the mouse superior colliculus in vivo.

Journal: eLife

Authors' code: KremkowLab/tangential_recording (no license), KremkowLab/Gehr_et_al_2023_eLife (no license)

Status: code verified, 18 files readable, 8 matches

Thursday, 7 September 2023 (19 papers)

[33720] doi:10.1002/advs.202303884 [paper, data]

Uncovering the role of FOXA2 in the Development of Human Serotonin Neurons.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[33721] doi:10.1002/brb3.3198 [paper, data]

Enhanced rich club connectivity in mild or moderate depression after nonpharmacological treatment: A preliminary study.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[33722] doi:10.1007/s10237-023-01739-w [paper, repository]

Inverse identification of region-specific hyperelastic material parameters for human brain tissue.

Journal: Biomechanics and modeling in mechanobiology

Authors' code: Zenodo 8095559 (CC-BY-4.0)

Status: code verified, 1 file readable

[33723] doi:10.1007/s11517-023-02916-w [paper, data]

Automatic detection of ictal activity in EEG using synchronization and chaos-based attributes.

Journal: Medical & biological engineering & computing

Status: data only, 1 dataset cited

[33724] doi:10.1016/j.dib.2023.109540 [paper, repository]

MILimbEEG: A dataset of EEG signals related to upper and lower limb execution of motor and motor imagery tasks.

Journal: Data in brief

Authors' code: Human-Machine-Interface/OpenBCI_Data_Acquisition (no license), Human-Machine-Interface/OpenBCI_Classification_Example (no license)

Status: code verified, 2,029 files readable, 2 matches

[33725] doi:10.1016/j.isci.2023.107849 [paper, repository]

Investigations on Na+, K+-ATPase energy consumption in ion flow of hydrophilic pores by THz unipolar stimulation.

Journal: iScience

Authors' code: Zenodo 8252966 (CC-BY-4.0)

Status: code verified, 13 files readable, 9 matches

[33726] doi:10.1016/j.nbd.2023.106286 [paper, data]

Unbiased classification of the elderly human brain proteome resolves distinct clinical and pathophysiological subtypes of cognitive impairment.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[33727] doi:10.1038/s41467-023-40687-y [paper, repository]

Mining multi-center heterogeneous medical data with distributed synthetic learning.

Journal: Nature communications

Authors' code: tommy-qichang/DSL_All_Code (BSD-2-Clause), tommy-qichang/AsynDGAN (BSD-2-Clause), Zenodo 8111579 (other-open)

Status: code verified, 1,584 files readable, 12 matches

[33728] doi:10.1038/s41467-023-40968-6 [paper, repository]

Astrocyte reactivity and inflammation-induced depression-like behaviors are regulated by Orai1 calcium channels.

Journal: Nature communications

Authors' code: PrakriyaLab/Astrocyte2022 (no license), NUPulmonary/utils (no license), Zenodo 8173010 (other-open)

Status: code verified, 67 files readable, 7 matches

[33729] doi:10.1038/s42003-023-05287-y [paper, data]

Regulation of brain endothelial cell physiology by the TAM receptor tyrosine kinase Mer.

Journal: Communications biology

Status: data only, 1 dataset cited

[33730] doi:10.1111/acel.13977 [paper, data]

Iron overload induces cerebral endothelial senescence in aged mice and in primary culture in a sex-dependent manner.

Journal: Aging cell

Status: data only, 1 dataset cited

[33731] doi:10.1111/cns.14421 [paper, data]

Effect of topographic comparison of electroencephalographic microstates on the diagnosis and prognosis prediction of patients with prolonged disorders of consciousness.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[33732] doi:10.1126/science.adh3253 [paper, repository]

Lifelong restructuring of 3D genome architecture in cerebellar granule cells.

Journal: Science (New York, N.Y.)

Authors' code: tanlongzhi/dip-c (no license)

Status: code verified, 147 files readable

[33733] doi:10.1162/imag_a_00014 [paper, data]

Successful modulation of temporoparietal junction activity and stimulus-driven attention by fNIRS-based neurofeedback-A randomized controlled proof-of-concept study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[33734] doi:10.3389/fgene.2023.1233657 [paper, data]

MBMethPred: a computational framework for the accurate classification of childhood medulloblastoma subgroups using data integration and AI-based approaches.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[33735] doi:10.3389/fnins.2023.1221401 [paper, repository]

Harnessing acoustic speech parameters to decipher amyloid status in individuals with mild cognitive impairment.

Journal: Frontiers in neuroscience

Authors' code: FernandoGaGu/pywinEA2 (MIT)

Status: code verified, 22 files readable

[33736] doi:10.3389/fpsyt.2023.1232015 [paper, data]

Bidirectional connectivity alterations in schizophrenia: a multivariate, machine-learning approach.

Journal: Frontiers in psychiatry

Status: data only, 2 datasets cited

[33737] doi:10.3390/bioengineering10091054 [paper, repository]

Exploiting Information in Event-Related Brain Potentials from Average Temporal Waveform, Time-Frequency Representation, and Phase Dynamics.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: guangouyang/STF (no license)

Status: code verified, 2 files readable, 2 matches

[33738] doi:10.3390/cells12182229 [paper]

Electric Field Effects on Brain Activity: Implications for Epilepsy and Burst Suppression.

Journal: Cells

Status: code on request

Wednesday, 6 September 2023 (24 papers)

[33739] doi:10.1002/advs.202303711 [paper, data]

LRRK2 Gly2019Ser Mutation Promotes ER Stress via Interacting with THBS1/TGF-β1 in Parkinson's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[33740] doi:10.1002/hbm.26475 [paper, repository]

Depression recurrence is accompanied by longer periods in default mode and more frequent attentional and reward processing dynamic brain-states during resting-state activity.

Journal: Human brain mapping

Authors' code: sonsolesalonsomartinez/rrMDD (no license)

Status: code verified, 6 files readable, 3 matches

[33741] doi:10.1007/s00701-023-05782-5 [paper]

Methodological and ethical challenges in the use of focused ultrasound for blood-brain barrier disruption in neuro-oncology.

Journal: Acta neurochirurgica

Status: code on request

[33742] doi:10.1016/j.isci.2023.107842 [paper]

Impaired pre-synaptic plasticity and visual responses in auxilin-knockout mice.

Journal: iScience

Status: code on request

[33743] doi:10.1038/s41420-023-01634-4 [paper, data]

FNDC5 inhibits autophagy of bone marrow mesenchymal stem cells and promotes their survival after transplantation by downregulating Sp1.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[33744] doi:10.1038/s41467-023-41199-5 [paper, data]

Xanomeline displays concomitant orthosteric and allosteric binding modes at the M₄ mAChR.

Journal: Nature communications

Status: data only, 2 datasets cited

[33745] doi:10.1038/s41586-023-06502-w [paper, repository]

Specialized astrocytes mediate glutamatergic gliotransmission in the CNS.

Journal: Nature

Authors' code: LieberInstitute/10xPilot_snRNAseq-human (Artistic-2.0), Zenodo 7704838 (CC-BY-4.0)

Status: code verified, 120 files readable, 7 matches

[33746] doi:10.1038/s42003-023-05288-x [paper, data]

Reward expectation enhances action-related activity of nigral dopaminergic and two striatal output pathways.

Journal: Communications biology

Status: data only, 1 dataset cited

[33747] doi:10.1093/pnasnexus/pgad290 [paper, repository]

Artificial intelligence, explainability, and the scientific method: A proof-of-concept study on novel retinal biomarker discovery.

Journal: PNAS nexus

Authors' code: parsadlr/fundus-sex (no license)

Status: empty repository, 1 file readable

[33748] doi:10.1098/rsbl.2023.0287 [paper, repository]

Handedness and individual roll-angle specialism when plunge diving in the northern gannet.

Journal: Biology letters

Authors' code: doi:10.6084/m9.figshare.c.6806507 (no license)

Status: code found, still to be checked

[33749] doi:10.1098/rsif.2023.0258 [paper, repository]

Mathematical modelling with Bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering.

Journal: Journal of the Royal Society, Interface

Authors' code: doi:10.6084/m9.figshare.c.6805042 (no license)

Status: code found, still to be checked

[33750] doi:10.1098/rsif.2023.0265 [paper, repository]

Neuronal branching is increasingly asymmetric near synapses, potentially enabling plasticity while minimizing energy dissipation and conduction time.

Journal: Journal of the Royal Society, Interface

Authors' code: pahelidc/scalingtheoryneurons (no license), doi:10.6084/m9.figshare.c.6805045 (no license)

Status: code verified, 11 files readable, 1 match

[33751] doi:10.1126/sciadv.adg1261 [paper, repository]

Topological packing statistics of living and nonliving matter.

Journal: Science advances

Authors' code: Zenodo 7931085 (CC-BY-4.0), Dom-Skinner/TopologicalAnalysis (no license)

Status: code verified, 12 files readable, 1 match

[33752] doi:10.1126/sciadv.adi3088 [paper, data]

A critical role for CaMKII in behavioral timescale synaptic plasticity in hippocampal CA1 pyramidal neurons.

Journal: Science advances

Status: data only, 1 dataset cited

[33753] doi:10.1162/imag_a_00013 [paper, repository]

Initial experiences with Direct Imaging of Neuronal Activity (DIANA) in humans.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: shotahodono/diana_spgre_sim (no license), OSF x3yab (no license)

Status: code verified, 2 files readable

[33754] doi:10.1186/s40246-023-00530-3 [paper]

Generation and characterization of a zebrafish knockout model of abcb4, a homolog of the human multidrug efflux transporter P-glycoprotein.

Journal: Human genomics

Status: data only

[33755] doi:10.1371/journal.pcbi.1011457 [paper, repository]

Spike-timing dependent plasticity partially compensates for neural delays in a multi-layered network of motion-sensitive neurons.

Journal: PLoS computational biology

Authors' code: OSF fczky (no license)

Status: code verified, 15 files readable, 8 matches

[33756] doi:10.1371/journal.pone.0290013 [paper, data]

Identification of candidate genes for developmental colour agnosia in a single unique family.

Journal: PloS one

Status: data only, 2 datasets cited

[33757] doi:10.3389/frdem.2023.1198006 [paper, repository]

Beneficial effects of physical exercise and an orally active mGluR2/3 antagonist pro-drug on neurogenesis and behavior in an Alzheimer's amyloidosis model.

Journal: Frontiers in dementia

Authors' code: mesudebicak/alzheimersdiseaseresearch (no license)

Status: code verified, 1 file readable

[33758] doi:10.3390/biology12091215 [paper, repository]

Transcriptomic Analysis of Light-Induced Genes in <i>Nasonia vitripennis</i>: Possible Implications for Circadian Light Entrainment Pathways.

Journal: Biology

Authors' code: YFWang-YvH/Transcriptomic-analysis-of-light-induced-genes-in-Nasonia-vitripennis-implications-for-circadian (GPL-3.0)

Status: code verified, 8 files readable, 6 matches

[33759] doi:10.3390/cells12182221 [paper, data]

Canagliflozin, an Inhibitor of the Na⁺-Coupled D-Glucose Cotransporter, SGLT2, Inhibits Astrocyte Swelling and Brain Swelling in Cerebral Ischemia.

Journal: Cells

Status: data only, 1 dataset cited

[33760] doi:10.3390/s23187694 [paper, data]

Decoding Algorithm of Motor Imagery Electroencephalogram Signal Based on CLRNet Network Model.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[33761] doi:10.3758/s13414-023-02773-7 [paper, data]

Young adults and multisensory time perception: Visual and auditory pathways in comparison.

Journal: Attention, perception & psychophysics

Status: data only, 1 dataset cited

[33762] doi:10.7554/elife.82914 [paper, repository]

Task-dependent optimal representations for cerebellar learning.

Journal: eLife

Authors' code: marjoriexie/cerebellar-task-dependent (GPL-3.0)

Status: code verified, 8 files readable, 2 matches

Tuesday, 5 September 2023 (27 papers)

[33763] doi:10.1001/jamanetworkopen.2023.33846 [paper, repository]

Reattribution to Mind-Brain Processes and Recovery From Chronic Back Pain: A Secondary Analysis of a Randomized Clinical Trial.

Journal: JAMA network open

Authors' code: yonestar/Ashar_2023_CBP_reattribution (GPL-3.0)

Status: empty repository, 2 files readable

[33764] doi:10.1007/s00406-023-01683-x [paper, repository]

Linking connectivity of deep brain stimulation of nucleus accumbens area with clinical depression improvements: a retrospective longitudinal case series.

Journal: European archives of psychiatry and clinical neuroscience

Authors' code: gitlab.switch.ch/brain-stimulation-mapping/2025_dbsinmdd (GPL-3.0)

Status: code verified, 48 files readable, 5 matches

[33765] doi:10.1016/j.isci.2023.107833 [paper]

Bibliometric analysis of research on neurodegenerative diseases and single-cell RNA sequencing: Opportunities and challenges.

Journal: iScience

Status: code on request

[33766] doi:10.1016/j.stem.2023.08.009 [paper, data]

LIF signaling regulates outer radial glial to interneuron fate during human cortical development.

Journal: Cell stem cell

Status: data only, 1 dataset cited

[33767] doi:10.1016/j.xpro.2023.102543 [paper, repository]

Mapping neuronal ensembles and pattern-completion neurons through graphical models.

Journal: STAR protocols

Authors' code: darikoneil/PatMap (MIT), darikoneil/pat-map (MIT), Zenodo 8145204 (other-open)

Status: code verified, 846 files readable, 6 matches

[33768] doi:10.1016/j.ynirp.2023.100183 [paper, repository]

Overlap in the cortical representation of hand and forearm muscles as assessed by navigated TMS.

Journal: Neuroimage. Reports

Authors' code: marlow17/surfaceanalysis (GPL-3.0)

Status: code verified, 20 files readable, 1 match

[33769] doi:10.1038/s41467-023-41024-z [paper, data]

Locating causal hubs of memory consolidation in spontaneous brain network in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[33770] doi:10.1038/s41467-023-41125-9 [paper, repository]

Beta traveling waves in monkey frontal and parietal areas encode recent reward history.

Journal: Nature communications

Authors' code: erfanzabeh/WaveMonk (gnu)

Status: code verified, 53 files readable, 5 matches

[33771] doi:10.1038/s41467-023-41128-6 [paper, repository]

Pathological pallidal beta activity in Parkinson's disease is sustained during sleep and associated with sleep disturbance.

Journal: Nature communications

Authors' code: zixiao-yin/SleepBeta (no license), Zenodo 8180780 (other-open), figshare 23740410 (CC-BY-4.0)

Status: code verified, 27 files readable

[33772] doi:10.1038/s41597-023-02445-z [paper, repository]

A large EEG database with users' profile information for motor imagery brain-computer interface research.

Journal: Scientific data

Authors' code: openvibe.inria.fr/pub/src (no license), gitlab.inria.fr/openvibe/meta (AGPL-3.0)

Status: code verified, 1,696 files readable, 3 matches

[33773] doi:10.1038/s41598-023-41314-y [paper, data]

Hybrid CNN-LSTM model with efficient hyperparameter tuning for prediction of Parkinson's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[33774] doi:10.1038/s41598-023-41362-4 [paper]

OCT-based deep-learning models for the identification of retinal key signs.

Journal: Scientific reports

Status: code on request

[33775] doi:10.1038/s42003-023-05294-z [paper, data]

Activation of TrkB signaling mitigates cerebellar anomalies caused by Rbm4-Bdnf deficiency.

Journal: Communications biology

Status: data only, 1 dataset cited

[33776] doi:10.1073/pnas.2301030120 [paper]

Fatty acid elongation by ELOVL6 hampers remyelination by promoting inflammatory foam cell formation during demyelination.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[33777] doi:10.1073/pnas.2303332120 [paper, repository]

Analytic relationship of relative synchronizability to network structure and motifs.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jlizier/linsync (GPL-3.0)

Status: code verified, 40 files readable, 8 matches

[33778] doi:10.1073/pnas.2308762120 [paper, data]

Dynamic switching of neural oscillations in the prefrontal-amygdala circuit for naturalistic freeze-or-flight.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[33779] doi:10.1152/ajpgi.00141.2023 [paper, data]

K_V7 but not dual small and intermediate K_Ca channel openers inhibit the activation of colonic afferents by noxious stimuli.

Journal: American journal of physiology. Gastrointestinal and liver physiology

Status: data only, 1 dataset cited

[33780] doi:10.1186/s12874-023-02009-0 [paper, repository]

Disease progression model anchored around clinical diagnosis in longitudinal cohorts: example of Alzheimer's disease and related dementia.

Journal: BMC medical research methodology

Authors' code: jrmie/dpm_anchored (no license)

Status: code verified, 1 file readable

[33781] doi:10.1186/s12915-023-01678-z [paper, repository]

Increased paternal corticosterone exposure influences offspring behaviour and expression of urinary pheromones.

Journal: BMC biology

Authors' code: Zenodo 7956197 (other-open), coracollar/mup_methylation (no license)

Status: code verified, 6 files readable, 1 match

[33782] doi:10.1242/bio.060002 [paper, data]

Using CRISPR/Cas9 to identify genes required for mechanosensory neuron development and function.

Journal: Biology open

Status: data only, 2 datasets cited

[33783] doi:10.1371/journal.pcbi.1010697 [paper, repository]

The inhibitory control of traveling waves in cortical networks.

Journal: PLoS computational biology

Authors' code: Ermentrout/ploswaves (no license)

Status: code verified, 1 file readable

[33784] doi:10.1371/journal.pcbi.1011446 [paper, repository]

Controlling brain dynamics: Landscape and transition path for working memory.

Journal: PLoS computational biology

Authors' code: chunhelilab/Land_WorkingMemory (no license)

Status: code verified, 16 files readable, 1 match

[33785] doi:10.1523/eneuro.0050-23.2023 [paper, repository]

EEG Phase Can Be Predicted with Similar Accuracy across Cognitive States after Accounting for Power and Signal-to-Noise Ratio.

Journal: eNeuro

Authors' code: CogNeW/project_eeg_public_dataset (no license)

Status: code verified, 57 files readable, 12 matches

[33786] doi:10.1523/eneuro.0091-23.2023 [paper, data]

Human Brain Project Partnering Projects Meeting: Status Quo and Outlook.

Journal: eNeuro

Status: data only, 2 datasets cited

[33787] doi:10.3389/fphys.2023.1213352 [paper, repository]

Reproducibility of cerebral blood flow, oxygen metabolism, and lactate and N-acetyl-aspartate concentrations measured using magnetic resonance imaging and spectroscopy.

Journal: Frontiers in physiology

Authors' code: MarkVestergaard/PCMCalculator (MIT), MarkVestergaard/SBOCalculator (MIT)

Status: code verified, 6 files readable, 3 matches

[33788] doi:10.3390/cells12182213 [paper, data]

Differential Gene Expression in Activated Microglia Treated with Adenosine A&lt;sub&gt;2A&lt;/sub&gt; Receptor Antagonists Highlights Olfactory Receptor 56 and T-Cell Activation GTPase-Activating Protein 1 as Potential Biomarkers of the Polarization of Activated Microglia.

Journal: Cells

Status: data only, 1 dataset cited

[33789] doi:10.7554/elife.86116 [paper, repository]

Manganese-enhanced magnetic resonance imaging reveals light-induced brain asymmetry in embryo.

Journal: eLife

Authors' code: Zenodo 7589348 (cc-by-nc-sa-1.0)

Status: code verified

Monday, 4 September 2023 (23 papers)

[33790] doi:10.1016/j.cell.2023.08.010 [paper, repository]

Corticotropin-releasing hormone signaling from prefrontal cortex to lateral septum suppresses interaction with familiar mice.

Journal: Cell

Authors' code: ramonnogueira/decode_familiarity (no license)

Status: code verified, 1 file readable

[33791] doi:10.1038/s41467-023-40678-z [paper, data]

Dissociable roles of human frontal eye fields and early visual cortex in presaccadic attention.

Journal: Nature communications

Status: data only, 1 dataset cited

[33792] doi:10.1038/s41467-023-41026-x [paper, data]

Unraveling the mechanisms of deep-brain stimulation of the internal capsule in a mouse model.

Journal: Nature communications

Status: data only, 1 dataset cited

[33793] doi:10.1038/s41467-023-41130-y [paper, repository]

Dopamine regulates decision thresholds in human reinforcement learning in males.

Journal: Nature communications

Authors' code: OSF 8vzgh (no license)

Status: empty repository

[33794] doi:10.1038/s41539-023-00184-9 [paper, repository]

Shared and distinct neural correlates of first and second language morphological processing in bilingual brain.

Journal: NPJ science of learning

Authors' code: OSF 29e3j (no license)

Status: code verified, 1 file readable

[33795] doi:10.1038/s41559-023-02186-7 [paper, repository]

Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution.

Journal: Nature ecology & evolution

Authors' code: AllenInstitute/Great_Ape_MTG (BSD-2-Clause), hamsinisuresh/Primate-MTG-coexpression (no license)

Status: code verified, 41 files readable, 4 matches

[33796] doi:10.1038/s41587-023-01937-y [paper, repository]

Spatial multimodal analysis of transcriptomes and metabolomes in tissues.

Journal: Nature biotechnology

Authors' code: marcovito/sma (no license)

Status: code verified, 13 files readable, 6 matches

[33797] doi:10.1038/s41593-023-01418-0 [paper, repository]

The mesencephalic locomotor region recruits V2a reticulospinal neurons to drive forward locomotion in larval zebrafish.

Journal: Nature neuroscience

Authors' code: wyartlab/Carbo-Tano_Lapoix_2023 (MIT), mpascucci/pycroscopy3D (LGPL-2.1)

Status: code verified, 189 files readable, 16 matches

[33798] doi:10.1038/s41598-023-40582-y [paper, data]

Brainwave activities reflecting depressed mood: a pilot study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[33799] doi:10.1038/s41598-023-40851-w [paper, repository]

Event-related potentials indicate differential neural reactivity to species and valence information in vocal stimuli in sleeping dogs.

Journal: Scientific reports

Authors' code: drive.google.com/drive/folders (no license)

Status: code verified

[33800] doi:10.1038/s41598-023-41357-1 [paper, data]

Acceleration of inferred neural responses to oddball targets in an individual with bilateral amygdala lesion compared to healthy controls.

Journal: Scientific reports

Status: data only, 1 dataset cited

[33801] doi:10.1038/s41598-023-41576-6 [paper, data]

Meningioma brain tumor detection and classification using hybrid CNN method and RIDGELET transform.

Journal: Scientific reports

Status: data only, 2 datasets cited

[33802] doi:10.1038/s41598-023-41682-5 [paper, data]

EEG feature selection method based on maximum information coefficient and quantum particle swarm.

Journal: Scientific reports

Status: data only, 2 datasets cited

[33803] doi:10.1038/s42003-023-05280-5 [paper, data]

Temperature-dependent modulation of odor-dependent behavior in three drosophilid fly species of differing thermal preference.

Journal: Communications biology

Status: data only, 1 dataset cited

[33804] doi:10.1093/braincomms/fcad238 [paper, data]

Optimal subthalamic stimulation sites and related networks for freezing of gait in Parkinson's disease.

Journal: Brain communications

Status: data only, 1 dataset cited

[33805] doi:10.1111/cns.14449 [paper, data]

Binding of RAGE and RIPK1 induces cognitive deficits in chronic hyperglycemia-derived neuroinflammation.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[33806] doi:10.1186/s13073-023-01224-0 [paper, data]

Revealing the developmental origin and lineage predilection of neural progenitors within human bone marrow via single-cell analysis: implications for regenerative medicine.

Journal: Genome medicine

Status: data only, 1 dataset cited

[33807] doi:10.1186/s40478-023-01637-3 [paper, repository]

Abnormal accumulation of extracellular vesicles in hippocampal dystrophic axons and regulation by the primary cilia in Alzheimer's disease.

Journal: Acta neuropathologica communications

Authors' code: indrops/indrops (no license)

Status: code verified, 7 files readable

[33808] doi:10.3390/cancers15174422 [paper, data]

Novel Function of Cancer Stem Cell Marker ALDH1A3 in Glioblastoma: Pro-Angiogenesis through Paracrine PAI-1 and IL-8.

Journal: Cancers

Status: data only, 10 datasets cited

[33809] doi:10.3390/pharmaceutics15092280 [paper, data]

Co-Dispersion Delivery Systems with Solubilizing Carriers Improving the Solubility and Permeability of Cannabinoids (Cannabidiol, Cannabidiolic Acid, and Cannabichromene) from &lt;i&gt;Cannabis sativa&lt;/i&gt; (Henola Variety) Inflorescences.

Journal: Pharmaceutics

Status: data only, 2 datasets cited

[33810] doi:10.7150/thno.86831 [paper, data]

Targeting redox imbalance in neurodegeneration: characterizing the role of GLP-1 receptor agonists.

Journal: Theranostics

Status: data only, 3 datasets cited

[33811] doi:10.7554/elife.85893 [paper, repository]

Id2 GABAergic interneurons comprise a neglected fourth major group of cortical inhibitory cells.

Journal: eLife

Authors' code: brendonw1/KilosortWrapper (no license)

Status: code verified, 22 files readable, 5 matches

[33812] doi:10.7554/elife.87306 [paper]

Self-formation of concentric zones of telencephalic and ocular tissues and directional retinal ganglion cell axons.

Journal: eLife

Status: data only

Sunday, 3 September 2023 (4 papers)

[33813] doi:10.1007/s00429-023-02699-8 [paper, data]

The prefrontal cortex of the bottlenose dolphin (Tursiops truncatus Montagu, 1821): a tractography study and comparison with the human.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[33814] doi:10.1016/j.dcn.2023.101293 [paper, repository]

Lateralization of the cerebral network of inhibition in children before and after cognitive training.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 8t9nx (no license)

Status: code verified, 1 file readable, 3 matches

[33815] doi:10.1016/j.dcn.2023.101294 [paper, data]

Associations between alcohol use and sex-specific maturation of subcortical gray matter morphometry from adolescence to adulthood: Replication across two longitudinal samples.

Journal: Developmental cognitive neuroscience

Status: data only, 2 datasets cited

[33816] doi:10.1016/j.xhgg.2023.100236 [paper]

Heterozygous nonsense variants in the ferritin heavy-chain gene FTH1 cause a neuroferritinopathy.

Journal: HGG advances

Status: code on request

Saturday, 2 September 2023 (10 papers, 8 on this page)

[33817] doi:10.1007/s11481-023-10081-y [paper, data]

Curcumin-activated Olfactory Ensheathing Cells Improve Functional Recovery After Spinal Cord Injury by Modulating Microglia Polarization Through APOE/TREM2/NF-κB Signaling Pathway.

Journal: Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology

Status: data only, 1 dataset cited

[33818] doi:10.1016/j.ibneur.2023.08.2191 [paper, data]

Taurine as a potential therapeutic agent interacting with multiple signaling pathways implicated in autism spectrum disorder (ASD): An in-silico analysis.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[33819] doi:10.1016/j.isci.2023.107821 [paper]

Ultrasensitive discrimination of volatile organic compounds using a microfluidic silicon SERS artificial intelligence chip.

Journal: iScience

Status: code on request

[33820] doi:10.1016/j.tranon.2023.101768 [paper]

Overexpression of CD2/CD27 could inhibit the activation of nitrogen metabolism pathways and suppress M2 polarization of macrophages, thereby preventing brain metastasis of breast cancer.

Journal: Translational oncology

Status: data only

[33821] doi:10.1038/s41398-023-02587-z [paper, repository]

Brain mediators of biased social learning of self-perception in social anxiety disorder.

Journal: Translational psychiatry

Authors' code: canlab (no license), canlab/MediationToolbox (no license)

Status: code verified, 202 files readable, 1 match

[33822] doi:10.1038/s41467-023-40803-y [paper, data]

Ascl1 and Ngn2 convert mouse embryonic stem cells to neurons via functionally distinct paths.

Journal: Nature communications

Status: code on request, 1 dataset cited

[33823] doi:10.1038/s41467-023-41114-y [paper, data]

Sulindac selectively induces autophagic apoptosis of GABAergic neurons and alters motor behaviour in zebrafish.

Journal: Nature communications

Status: data only, 1 dataset cited

[33824] doi:10.1038/s41598-023-41359-z [paper]

Detecting schizophrenia with 3D structural brain MRI using deep learning.

Journal: Scientific reports

Status: code on request

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