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Intravital Multimodal Imaging of Human Cortical Organoid Transplantation in a Mouse Model of Chronic Stroke.

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Paper

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The authors' code

Markdown · 8 lines · 336 B · no license

  1. # MIPOT
  2. Resources for this paper https://www.biorxiv.org/content/10.1101/2025.07.05.663297v1
  3. Please find the design files for the MRI-compatible headbar and also the code for analysis of cell tracking
  4. <img width="527" height="376" alt="image" src="https://github.com/user-attachments/assets/20c66891-a6eb-492d-970d-b0d16091d58b" />

README.md at commit f3cf8e3, no license · at the source

Overview

Authors: Jinghui Wang1, Guanda Qiao1, Honglin Tan1, Colleen Russel1, Baixuan Yang1, Mengyang Jacky Li2, Kexin Wang3,4, Jiadi Xu4,5, Chengyan Chu1, Miroslaw Janowski1, Tian‐Ming Fu2,6, Piotr Walczak1, Yajie Liang1
ORCID iDs: Yajie Liang
  1. Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, MD, USA
  2. Department of Electrical and Computer Engineering, Princeton University, Princeton, NJ, USA
  3. Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA
  4. F.M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Research Institute, Baltimore, MD, USA
  5. Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA
  6. Omenn Darling Bioengineering Institute, Princeton University, Princeton, NJ, USA
Institutions: University of Maryland, Baltimore (United States); Princeton University (United States); Kennedy Krieger Institute (United States); Johns Hopkins University (United States); Johns Hopkins Medicine (United States)
Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany), volume 13, issue 52, article e15913
Dates: received 19 August 2025; accepted 15 June 2026; published online 14 July 2026; in print September 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1002/advs.202515913 · PMID 42447126 · PMCID PMC13367743 · OpenAlex W7168284528
Open access: gold, a free copy (OpenAlex)
Status: empty repository
Categories: structural MRI / diffusion (modality), histology / microscopy (modality), optical imaging (calcium, voltage, 2-photon) (modality), human (organism), mouse (organism), stroke (population)
Methods: Statistics, Connectivity, fMRI & imaging, Single-unit activity, calcium imaging
Keywords: brain organoids, MRI, multimodal intravital imaging, stroke, two‐photon microscopy
MeSH: Intravital Microscopy*, Multimodal Imaging*, Organoids*, Stroke*, Animals, Disease Models, Animal, Humans, Induced Pluripotent Stem Cells, Magnetic Resonance Imaging, Mice (* major topic)
Topic: Pluripotent Stem Cells Research (Molecular Biology, Biochemistry, Genetics and Molecular Biology), according to OpenAlex
Funding: NIDA NIH HHS (R01 DA056739, R01DA056739); NIH HHS (R03NS123733, R01DA056739, R03NS128459, R21AG074978, S10 OD030430, 1R21EB035681); NIA NIH HHS (R21 AG077631, R21 AG074978); Maryland Stem Cell Research Fund for the postdoc fellowship (2024-MSCRFF-6328); NINDS NIH HHS (R03 NS123733, R03 NS128459); Maryland Stem Cell Research Fund (2022-MSCRFL-5893, 2022-MSCRFD-5886); NIBIB NIH HHS (R21 EB035681)
Citations: not cited yet (Europe PMC); 69 references in the paper
Research resources: Human induced pluripotent stem cells RRID:CVCL_B5P3

Abstract

Chronic stroke poses enduring neurological deficits, while experimental strategies based on human induced pluripotent stem cell‐derived cortical organoids (COs) remain limited by the lack of tools for longitudinal in vivo graft monitoring. Here, we introduce the Multimodal Imaging Platform for Organoid Tracking (MIPOT), integrating MRI, bioluminescence imaging, surgical microscopy, and intravital two‐photon fluorescence microscopy to monitor CO transplantation in chronic stroke lesions in mice. MIPOT enabled confirmation of initial graft placement within cleaned infarct cavities, longitudinal assessment of viability‐associated bioluminescence signals, and high‐resolution visualization of graft‐derived cells and short‐term cellular dynamics. Bioluminescence imaging revealed a progressive decline in graft‐associated signals that stabilized at approximately 25% by two weeks, while endpoint histology confirmed limited persistence of human graft‐derived cells at later time points. Together, MIPOT provides a multimodal framework for monitoring organoid transplantation in the injured brain and supports future optimization of graft survival, maturation, and host–graft integration.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repository

Its files are read in the Code ↔ Paper reader above.

liangy10/MIPOT

License: none: the authors keep all their rights
State: the link answers, verified on 27 September 2026
Evidence: files inventoried
Commit: f3cf8e3742a3cb57765f3b667b08b5fc63935147, 28 May 2026
Size: 6 files, 0 scripts
Software Heritage: not archived
Found in: the text, “Two‐Photon Imaging and Analysis”
Holds: README
Not found: license file, CITATION.cff, environment file, tests, continuous integration, documentation
Availability: 1 check, the latest on 27 September 2026: the link answers
  • 27 September 2026: the link answers
1 file

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

What the map holds:

  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 0 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

No dataset and no data link were found in the paper.

Data Availability Statement

Design files for the removable 3D‐printed head‐fixation system and data analysis are available at https://github.com/liangy10/MIPOT. All data are available from the Lead Contact, Yajie Liang (), upon request.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

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Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 13 authors, 5 keywords, 10 MeSH terms, 7 funders, 68 references, 1 RRID.

Cite

This paper

Wang, J., Qiao, G., Tan, H., Russel, C., Yang, B., Li, M. J., Wang, K., Xu, J., Chu, C., Janowski, M., Fu, T., Walczak, P., & Liang, Y. (2026). Intravital Multimodal Imaging of Human Cortical Organoid Transplantation in a Mouse Model of Chronic Stroke. Advanced science (Weinheim, Baden-Wurttemberg, Germany), 13(52), e15913. https://doi.org/10.1002/advs.202515913

BibTeX

@article{wang2026intravital,
author = {Wang, Jinghui and Qiao, Guanda and Tan, Honglin and Russel, Colleen and Yang, Baixuan and Li, Mengyang Jacky and Wang, Kexin and Xu, Jiadi and Chu, Chengyan and Janowski, Miroslaw and Fu, Tian‐Ming and Walczak, Piotr and Liang, Yajie},
title = {{Intravital Multimodal Imaging of Human Cortical Organoid Transplantation in a Mouse Model of Chronic Stroke}},
journal = {Advanced science (Weinheim, Baden-Wurttemberg, Germany)},
year = {2026},
month = jul,
volume = {13},
number = {52},
pages = {e15913},
publisher = {Wiley},
issn = {2198-3844},
doi = {10.1002/advs.202515913},
url = {https://doi.org/10.1002/advs.202515913},
pmid = {42447126},
pmcid = {PMC13367743}
}

RIS

TY - JOUR
AU - Wang, Jinghui
AU - Qiao, Guanda
AU - Tan, Honglin
AU - Russel, Colleen
AU - Yang, Baixuan
AU - Li, Mengyang Jacky
AU - Wang, Kexin
AU - Xu, Jiadi
AU - Chu, Chengyan
AU - Janowski, Miroslaw
AU - Fu, Tian‐Ming
AU - Walczak, Piotr
AU - Liang, Yajie
TI - Intravital Multimodal Imaging of Human Cortical Organoid Transplantation in a Mouse Model of Chronic Stroke
T2 - Advanced science (Weinheim, Baden-Wurttemberg, Germany)
J2 - Adv Sci (Weinh)
PY - 2026
DA - 2026/07/14
VL - 13
IS - 52
SP - e15913
SN - 2198-3844
PB - Wiley
DO - 10.1002/advs.202515913
UR - https://doi.org/10.1002/advs.202515913
LA - en
ER -

CSL-JSON

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